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3490 472 +IMG109 G NORM +IMG110 G CIRC B 4233 4023 382 +IMG111 G SPIC M 924 3514 358 +IMG112 G SPIC M 879 3412 320 +IMG113 G NORM +IMG114 G CALC M 4364 3374 349 +IMG114 G CALC M 4216 1843 289 +IMG114 G CALC M 3572 3031 400 +IMG115 G NORM +IMG116 G CALC M 3629 2872 317 +IMG116 G CALC M 4217 4444 395 +IMG116 G CALC M 3429 4200 367 +IMG116 G CIRC M 4284 1336 490 +IMG117 F CIRC N 2779 2613 195 +IMG118 F CIRC N 3092 4331 180 +IMG119 G NORM +IMG120 G NORM +IMG121 G NORM +IMG122 G NORM +IMG123 G NORM +IMG124 G NORM +IMG125 G CALC B 1354 946 44 +IMG125 G CALC B 1623 1134 59 +IMG125 G ASYM N 1473 1097 285 +IMG126 G ASYM N 3044 1791 482 +IMG127 G MISC N 770 1925 343 +IMG128 G NORM +IMG129 G MISC N 770 3066 328 +IMG130 G NORM +IMG131 G CIRC B 172 3022 142 +IMG132 G CIRC B 3477 1665 139 +IMG133 G ASYM N 804 1978 341 +IMG134 G CIRC B 1614 1307 138 +IMG135 G MISC N 1710 2575 223 +IMG136 G CIRC B 1149 1017 647 +IMG137 G NORM +IMG138 G CIRC B 2039 2955 1169 +IMG139 G CALC B 1029 3586 103 +IMG139 G CALC B 1580 2499 552 +IMG140 G CALC B 2058 2601 108 +IMG140 G SPIC M 2858 2769 590 +IMG141 G CALC B 886 3930 99 +IMG141 G CALC B 1636 3713 312 +IMG142 G CALC B 987 1832 95 +IMG142 G MISC M 1467 1973 269 +IMG143 G CALC B 705 2604 133 +IMG143 G CIRC B 920 2979 99 +IMG144 G CIRC B 3060 1537 426 +IMG144 G CIRC B 2964 2576 356 +IMG145 G CALC B 923 3451 151 +IMG146 G CIRC B 1433 1405 180 +IMG146 G CIRC B 1393 1651 197 +IMG147 G CALC B 899 2008 48 +IMG148 G CIRC B 1662 680 158 +IMG149 G CALC B 872 3229 38 +IMG150 G CIRC B 4411 2710 304 +IMG151 G NORM +IMG152 G NORM +IMG153 G NORM +IMG154 G NORM +IMG155 G NORM +IMG156 G CIRC B 2787 2665 230 +IMG157 G NORM +IMG158 G CIRC B 3678 2996 436 +IMG159 G ARCH M 3737 3269 386 +IMG159 G CALC B 2795 3236 113 +IMG160 F NORM +IMG161 G ARCH M 3950 2751 357 +IMG161 G CALC B 3099 2300 92 +IMG162 F NORM +IMG163 G NORM +IMG164 G CIRC B 2949 3054 194 +IMG165 G NORM +IMG166 F CIRC B 3602 1806 80 +IMG167 G NORM +IMG168 G NORM +IMG169 G NORM +IMG170 G NORM +IMG171 F 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2865 168 +IMG206 F CALC B 3537 4828 33 +IMG207 G NORM +IMG208 G NORM +IMG209 G NORM +IMG210 G NORM +IMG211 G NORM +IMG212 G NORM +IMG213 G NORM +IMG214 G NORM +IMG215 G NORM +IMG216 G NORM +IMG217 G NORM +IMG218 G NORM +IMG219 G CIRC B 337 3144 151 +IMG220 G SPIC M 3813 1671 304 +IMG221 G NORM +IMG222 G SPIC M 2989 2406 324 +IMG222 G CIRC N 4313 395 852 +IMG223 G NORM +IMG224 G NORM +IMG225 G NORM +IMG226 G NORM +IMG227 G NORM +IMG228 G NORM +IMG229 G NORM +IMG230 G NORM +IMG231 G NORM +IMG232 G CIRC M 4428 1151 483 +IMG233 G CIRC B 1223 2914 87 +IMG233 G CIRC B 1363 3028 85 +IMG234 G CIRC M 3774 2557 477 +IMG234 G CIRC N 4612 1506 277 +IMG235 G NORM +IMG236 G NORM +IMG237 G CIRC B 495 2194 68 +IMG238 G NORM +IMG239 G NORM +IMG240 G NORM +IMG241 G NORM +IMG242 G NORM +IMG243 G NORM +IMG244 G NORM +IMG245 G NORM +IMG246 G NORM +IMG247 G NORM +IMG248 G NORM +IMG249 G NORM +IMG250 G NORM +IMG251 G CIRC B 579 1804 142 +IMG252 G CIRC B 4323 3054 192 +IMG252 G CIRC B 2961 3432 60 +IMG253 G 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1327 2299 553 +IMG407 G CIRC B 3474 1743 206 +IMG407 G CIRC B 4313 1747 256 +IMG407 G CIRC B 4697 3826 145 +IMG408 G CIRC B 1581 3123 272 +IMG408 G CIRC B 350 3144 199 +IMG408 G CIRC B 523 2873 130 +IMG409 G CIRC B 1795 3781 233 +IMG409 G CIRC B 365 4315 225 +IMG409 G CIRC B 527 4152 115 +IMG409 G CIRC B 773 4194 85 +IMG410 G CIRC B 2687 2994 218 +IMG410 G CIRC B 3200 2413 209 +IMG410 G CIRC B 4409 2445 162 +IMG410 G CIRC B 4655 2858 269 +IMG411 G MISC M 801 3374 476 +IMG411 G CIRC M 1465 3170 273 +IMG412 G MISC M 488 4089 428 +IMG412 G MISC M 1260 3648 179 +IMG412 G MISC M 1197 4082 287 +IMG413 G SPIC M 4269 3557 556 +IMG413 G CIRC M 3857 3184 319 +IMG414 G SPIC M 4414 3117 715 +IMG414 G CIRC M 3801 3033 306 +IMG415 G CIRC B 3584 2763 159 +IMG415 G CIRC B 3849 4356 155 +IMG416 G CIRC B 3205 3273 170 +IMG416 G CIRC B 4324 4440 150 +IMG417 G SPIC M 806 3256 330 +IMG417 G MISC M 988 2855 267 +IMG418 F SPIC M 342 3620 386 +IMG419 G CIRC B 792 4453 307 +IMG419 G CIRC B 1177 3286 331 +IMG419 G CALC M 816 3857 497 +IMG420 G CIRC B 3661 3877 194 +IMG421 G MISC B 497 3854 388 +IMG421 G CALC M 960 3548 499 +IMG422 G CIRC B 3246 3504 200 +IMG423 F CIRC B 3845 4409 309 +IMG424 F CIRC B 4281 4072 340 +IMG425 G CIRC B 596 1944 341 +IMG426 G CIRC B 1577 2362 282 +IMG427 G MISC M 322 4285 420 +IMG428 G MISC M 477 3501 471 +IMG429 G CALC M 953 2778 253 +IMG429 G CALC M 911 2377 200 +IMG430 G CALC M 1015 2813 364 +IMG431 D CIRC B 398 3658 470 +IMG432 D CIRC B 4320 3282 223 +IMG433 D CIRC B 311 3334 349 +IMG433 D CIRC B 604 2831 260 +IMG434 D CIRC B 3981 3358 160 +IMG435 G ARCH M 1020 2268 150 +IMG436 G ARCH M 1224 3948 162 +IMG436 G SPIC M 84 872 310 +IMG437 F CIRC B 242 1885 162 +IMG438 F CIRC B 2873 2410 708 +IMG439 F CIRC B 1322 1837 133 +IMG440 F CIRC B 3563 3390 860 +IMG441 G CIRC B 604 3032 252 +IMG441 G CIRC B 646 2551 274 +IMG442 G CIRC B 295 3934 258 +IMG442 G CIRC B 448 3534 267 +IMG443 G MISC M 479 2724 812 +IMG444 G MISC M 1109 3226 676 +IMG445 G SPIC M 4547 1082 279 +IMG445 G CIRC B 3395 3413 140 +IMG446 G SPIC M 4282 2909 445 +IMG446 G CIRC B 3695 4292 113 +IMG446 G CIRC B 3766 2198 180 +IMG447 G MISC N 1438 3304 355 +IMG448 F SPIC M 3547 3202 110 +IMG449 F SPIC M 3624 2396 112 +IMG450 F SPIC M 1324 2604 224 +IMG451 F SPIC M 943 2168 201 +IMG452 F SPIC M 28 3503 20 +IMG453 F SPIC M 108 3409 105 +IMG454 F SPIC M 1251 2618 - +IMG455 F SPIC M 140 2364 208 +IMG456 G SPIC M 424 2602 360 +IMG457 - CIRC M 688 2662 1096 +IMG458 - CIRC M 608 2958 1001 +IMG459 G CIRC B 888 3282 245 +IMG460 G CIRC B 372 3114 250 +IMG461 G NORM +IMG462 G NORM +IMG463 G NORM +IMG464 G NORM +IMG465 G CIRC B 714 3420 336 +IMG466 G CIRC B 736 2454 368 +IMG467 G CIRC B 1523 3270 342 +IMG468 G CIRC B 620 2060 388 +IMG469 G CIRC B 873 3796 320 +IMG469 G CIRC B 933 2976 100 +IMG469 G CALC M 441 3332 104 +IMG470 G CIRC B 966 3472 262 +IMG470 G CIRC B 462 3259 96 +IMG470 G CIRC B 771 3898 66 +IMG470 G CALC M 282 2704 93 +IMG471 G SPIC M 516 3416 232 +IMG472 G SPIC M 520 4156 252 +IMG473 G MISC M 2843 3186 330 +IMG474 G MISC M 2265 2442 408 +IMG475 G MISC M 2003 3744 192 +IMG475 G CIRC B 831 2716 156 +IMG476 G MISC M 1802 3052 173 +IMG477 G CIRC B 732 2616 222 +IMG478 G CIRC B 714 1542 216 +IMG478 G CIRC B 348 2886 99 +IMG479 G SPIC M 3956 2098 198 +IMG480 G SPIC M 4334 2408 424 +IMG481 G CIRC B 4120 3744 204 +IMG482 G CIRC B 4061 2514 300 +IMG483 G SPIC M 1182 2889 252 +IMG484 G SPIC M 1070 3540 476 +IMG485 F SPIC M 3511 3212 316 +IMG486 G SPIC M 748 3616 184 +IMG487 G SPIC M 913 3318 224 +IMG488 G SPIC M 910 2760 621 +IMG489 G SPIC M 1277 2603 245 +IMG490 G SPIC M 121 2170 259 +IMG491 G SPIC M 907 2346 295 +IMG492 G MISC M 1141 2929 578 +IMG493 G MISC M 1292 3093 610 +IMG494 G CIRC B 3691 3185 36 +IMG495 G CIRC B 3409 4268 340 +IMG496 G MISC M 4232 2028 290 +IMG497 G CALC B 3411 3283 124 +IMG497 G CIRC B 3744 2321 159 +IMG498 G CALC B 3211 3613 167 +IMG498 G CIRC B 3548 2932 177 +IMG499 G CIRC B 3333 2874 294 +IMG500 G CIRC B 3279 3913 235 +IMG501 G MISC M 4495 2323 810 +IMG502 G MISC M 4153 3265 1545 +IMG503 G NORM +IMG504 G NORM +IMG505 G NORM +IMG506 F NORM +IMG507 F NORM +IMG508 F NORM +IMG509 F NORM +IMG510 G NORM diff --git a/third_dataset/dmid-breast-cancer-mammography-dataset/data/TIFF Images/TIFF Images/separate_benign_and_malignant_data.py b/third_dataset/dmid-breast-cancer-mammography-dataset/data/TIFF Images/TIFF Images/separate_benign_and_malignant_data.py new file mode 100644 index 0000000000000000000000000000000000000000..c4b8324a7a271182f807f5e4d12f7c7785a83516 --- /dev/null +++ b/third_dataset/dmid-breast-cancer-mammography-dataset/data/TIFF Images/TIFF Images/separate_benign_and_malignant_data.py @@ -0,0 +1,66 @@ +# place this script in the same hierarchy as "MIASimages" directory + +import os +import sys +from PIL import Image +import shutil + +# path to all images +#all_dataset_path = "D:/PhD and Research/Research_Related/PhD PDPU/DC/DC 5/Implementation/LatestProcessesMIAS/Enhanced/" + +#all_dataset_path = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Enhanced/" +all_dataset_path ="D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Artefactsremoved/" + +# path to save benign images +#cleaned_dataset_path_b = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Enhanced/Benign/" +cleaned_dataset_path_b = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Artefactsremoved/Benign/" + +# path to save malignant images +#cleaned_dataset_path_m = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Enhanced/Malignant/" +cleaned_dataset_path_m = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Artefactsremoved/Malignant/" +# path to save normal images +#cleaned_dataset_path_n = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Enhanced/Normal/" +cleaned_dataset_path_n = "D:/Drive D/PhD/DC/Dataset/Dataset to be published/RajivImages_Final/New folder/parita/Final Dataset/Artefactsremoved/Normal/" + +# open 'annotation.txt' +# annotation.txt is created using the information about the +# images from the MIAS database +print('Processing...') +with open('Info.txt', 'r') as file: +# line = file.readlines() + for line in file: + if 'B' in line: + # source file from "MIASimages" directory + #src = all_dataset_path + str(line.split(' ')[0]) + '.png' + src = all_dataset_path + str(line.replace('\t',' ').split(' ')[0]) + '.png' + + + # destination file for benign images + dst = cleaned_dataset_path_b + str(line.replace('\t',' ').split(' ')[0]) + '_benign.png' + + # copy benign images to 'dataset/benign/' + shutil.copy2(src, dst) + + + if 'NOR' in line: + # source file from "all_mias" directory + src2 = all_dataset_path + str(line.replace('\t',' ').split(' ')[0]) + '.png' + + # destination file for malignant images + dst2 = cleaned_dataset_path_n + str(line.replace('\t',' ').split(' ')[0]) + '.png' + + # copy normal images to 'dataset/normal/' + shutil.copy2(src2, dst2) + + if 'M' in line: + # source file from "all_mias" directory + src1 = all_dataset_path + str(line.replace('\t',' ').split(' ')[0]) + '.png' + + # destination file for malignant images + dst1 = cleaned_dataset_path_m + str(line.replace('\t',' ').split(' ')[0]) + '_malignant.png' + + # copy malignant images to 'dataset/malignant/' + shutil.copy2(src1, dst1) + + +print('Finished processing!')