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held-out specimen. They are stored in heldout/images + heldout/labels, physically separate from imagesTr/labelsTr, so nnU-Net's own planning/preprocessing/cross-validation never sees them. Report results with that scope, not as cross-specimen generalization." + }, + "n_train_cases": 773, + "n_holdout_cases": 193 +} \ No newline at end of file diff --git a/training_dataset/CS17-6521/Dataset517_AtlasCS17ManualStructures/split_manifest.json b/training_dataset/CS17-6521/Dataset517_AtlasCS17ManualStructures/split_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..cd4f5b2686caf7f8678c8485946d832b2bc79235 --- /dev/null +++ b/training_dataset/CS17-6521/Dataset517_AtlasCS17ManualStructures/split_manifest.json @@ -0,0 +1,978 @@ +{ + "seed": 42, + "holdout_fraction": 0.2, + "n_total": 966, + "n_train": 773, + "n_holdout": 193, + "train_cases": [ + "CS17_6521_00066", + "CS17_6521_00067", + "CS17_6521_00068", + "CS17_6521_00069", + "CS17_6521_00070", + "CS17_6521_00071", + "CS17_6521_00072", + "CS17_6521_00073", + "CS17_6521_00074", + "CS17_6521_00075", + "CS17_6521_00076", + "CS17_6521_00077", + "CS17_6521_00078", + "CS17_6521_00079", + 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"CS17_6521_00892", + "CS17_6521_00893", + "CS17_6521_00894", + "CS17_6521_00895", + "CS17_6521_00897", + "CS17_6521_00900", + "CS17_6521_00904", + "CS17_6521_00905", + "CS17_6521_00906", + "CS17_6521_00907", + "CS17_6521_00910", + "CS17_6521_00911", + "CS17_6521_00912", + "CS17_6521_00913", + "CS17_6521_00915", + "CS17_6521_00916", + "CS17_6521_00917", + "CS17_6521_00919", + "CS17_6521_00920", + "CS17_6521_00922", + "CS17_6521_00923", + "CS17_6521_00924", + "CS17_6521_00925", + "CS17_6521_00926", + "CS17_6521_00928", + "CS17_6521_00929", + "CS17_6521_00931", + "CS17_6521_00932", + "CS17_6521_00934", + "CS17_6521_00935", + "CS17_6521_00937", + "CS17_6521_00939", + "CS17_6521_00940", + "CS17_6521_00941", + "CS17_6521_00943", + "CS17_6521_00944", + "CS17_6521_00945", + "CS17_6521_00946", + "CS17_6521_00947", + "CS17_6521_00949", + "CS17_6521_00951", + "CS17_6521_00952", + "CS17_6521_00953", + "CS17_6521_00954", + "CS17_6521_00955", + "CS17_6521_00956", + "CS17_6521_00960", + "CS17_6521_00961", + "CS17_6521_00962", + "CS17_6521_00963", + "CS17_6521_00964", + "CS17_6521_00966", + "CS17_6521_00967", + "CS17_6521_00968", + "CS17_6521_00970", + "CS17_6521_00972", + "CS17_6521_00973", + "CS17_6521_00976", + "CS17_6521_00977", + "CS17_6521_00978", + "CS17_6521_00980", + "CS17_6521_00982", + "CS17_6521_00983", + "CS17_6521_00984", + "CS17_6521_00986", + "CS17_6521_00988", + "CS17_6521_00989", + "CS17_6521_00990", + "CS17_6521_00991", + "CS17_6521_00992", + "CS17_6521_00994", + "CS17_6521_00995", + "CS17_6521_00996", + "CS17_6521_00997", + "CS17_6521_00998", + "CS17_6521_00999", + "CS17_6521_01000", + "CS17_6521_01001", + "CS17_6521_01002", + "CS17_6521_01003", + "CS17_6521_01004", + "CS17_6521_01005", + "CS17_6521_01006", + "CS17_6521_01007", + "CS17_6521_01008", + "CS17_6521_01009", + "CS17_6521_01010", + "CS17_6521_01011", + "CS17_6521_01012", + "CS17_6521_01013", + "CS17_6521_01014", + "CS17_6521_01015", + "CS17_6521_01016", + "CS17_6521_01019", + "CS17_6521_01020", + "CS17_6521_01021", + "CS17_6521_01022", + "CS17_6521_01024", + "CS17_6521_01028", + "CS17_6521_01030", + "CS17_6521_01031" + ], + "holdout_cases": [ + "CS17_6521_00089", + "CS17_6521_00096", + "CS17_6521_00099", + "CS17_6521_00105", + "CS17_6521_00110", + "CS17_6521_00115", + "CS17_6521_00125", + "CS17_6521_00126", + "CS17_6521_00129", + "CS17_6521_00131", + "CS17_6521_00132", + "CS17_6521_00133", + "CS17_6521_00136", + "CS17_6521_00138", + "CS17_6521_00142", + "CS17_6521_00144", + "CS17_6521_00152", + "CS17_6521_00154", + "CS17_6521_00162", + "CS17_6521_00173", + "CS17_6521_00176", + "CS17_6521_00186", + "CS17_6521_00202", + "CS17_6521_00203", + "CS17_6521_00205", + "CS17_6521_00207", + "CS17_6521_00224", + "CS17_6521_00231", + "CS17_6521_00234", + "CS17_6521_00240", + "CS17_6521_00250", + "CS17_6521_00264", + "CS17_6521_00265", + "CS17_6521_00275", + "CS17_6521_00276", + "CS17_6521_00279", + "CS17_6521_00281", + "CS17_6521_00297", + "CS17_6521_00310", + "CS17_6521_00313", + "CS17_6521_00316", + "CS17_6521_00325", + "CS17_6521_00326", + "CS17_6521_00327", + "CS17_6521_00331", + "CS17_6521_00332", + "CS17_6521_00341", + "CS17_6521_00343", + "CS17_6521_00346", + "CS17_6521_00347", + "CS17_6521_00352", + "CS17_6521_00356", + "CS17_6521_00360", + "CS17_6521_00362", + "CS17_6521_00368", + "CS17_6521_00371", + "CS17_6521_00372", + "CS17_6521_00375", + "CS17_6521_00377", + "CS17_6521_00380", + "CS17_6521_00384", + "CS17_6521_00387", + "CS17_6521_00389", + "CS17_6521_00393", + "CS17_6521_00394", + "CS17_6521_00398", + "CS17_6521_00410", + "CS17_6521_00418", + "CS17_6521_00421", + "CS17_6521_00425", + "CS17_6521_00427", + "CS17_6521_00431", + "CS17_6521_00437", + "CS17_6521_00460", + "CS17_6521_00464", + "CS17_6521_00474", + "CS17_6521_00490", + "CS17_6521_00491", + "CS17_6521_00494", + "CS17_6521_00499", + "CS17_6521_00515", + "CS17_6521_00522", + "CS17_6521_00528", + "CS17_6521_00533", + "CS17_6521_00543", + "CS17_6521_00547", + "CS17_6521_00551", + "CS17_6521_00559", + "CS17_6521_00560", + "CS17_6521_00567", + "CS17_6521_00582", + "CS17_6521_00585", + "CS17_6521_00588", + "CS17_6521_00595", + "CS17_6521_00598", + "CS17_6521_00600", + "CS17_6521_00601", + "CS17_6521_00602", + "CS17_6521_00605", + "CS17_6521_00607", + "CS17_6521_00613", + "CS17_6521_00617", + "CS17_6521_00620", + "CS17_6521_00623", + "CS17_6521_00638", + "CS17_6521_00641", + "CS17_6521_00642", + "CS17_6521_00644", + "CS17_6521_00646", + "CS17_6521_00647", + "CS17_6521_00649", + "CS17_6521_00653", + "CS17_6521_00668", + "CS17_6521_00669", + "CS17_6521_00671", + "CS17_6521_00687", + "CS17_6521_00688", + "CS17_6521_00694", + "CS17_6521_00695", + "CS17_6521_00696", + "CS17_6521_00697", + "CS17_6521_00716", + "CS17_6521_00721", + "CS17_6521_00722", + "CS17_6521_00731", + "CS17_6521_00732", + "CS17_6521_00739", + "CS17_6521_00743", + "CS17_6521_00745", + "CS17_6521_00758", + "CS17_6521_00763", + "CS17_6521_00769", + "CS17_6521_00773", + "CS17_6521_00774", + "CS17_6521_00777", + "CS17_6521_00781", + "CS17_6521_00788", + "CS17_6521_00802", + "CS17_6521_00811", + "CS17_6521_00812", + "CS17_6521_00822", + "CS17_6521_00826", + "CS17_6521_00828", + "CS17_6521_00833", + "CS17_6521_00839", + "CS17_6521_00849", + "CS17_6521_00853", + "CS17_6521_00858", + "CS17_6521_00863", + "CS17_6521_00864", + "CS17_6521_00866", + "CS17_6521_00869", + "CS17_6521_00873", + "CS17_6521_00886", + "CS17_6521_00896", + "CS17_6521_00898", + "CS17_6521_00899", + "CS17_6521_00901", + "CS17_6521_00902", + "CS17_6521_00903", + "CS17_6521_00908", + "CS17_6521_00909", + "CS17_6521_00914", + "CS17_6521_00918", + "CS17_6521_00921", + "CS17_6521_00927", + "CS17_6521_00930", + "CS17_6521_00933", + "CS17_6521_00936", + "CS17_6521_00938", + "CS17_6521_00942", + "CS17_6521_00948", + "CS17_6521_00950", + "CS17_6521_00957", + "CS17_6521_00958", + "CS17_6521_00959", + "CS17_6521_00965", + "CS17_6521_00969", + "CS17_6521_00971", + "CS17_6521_00974", + "CS17_6521_00975", + "CS17_6521_00979", + "CS17_6521_00981", + "CS17_6521_00985", + "CS17_6521_00987", + "CS17_6521_00993", + "CS17_6521_01017", + "CS17_6521_01018", + "CS17_6521_01023", + "CS17_6521_01025", + "CS17_6521_01026", + "CS17_6521_01027", + "CS17_6521_01029" + ], + "note": "Held-out cases are held-out SLICES from this one specimen (CS17-6521), not a held-out specimen. They are stored in heldout/images + heldout/labels, physically separate from imagesTr/labelsTr, so nnU-Net's own planning/preprocessing/cross-validation never sees them. Report results with that scope, not as cross-specimen generalization." +} \ No newline at end of file