"""Validate the produced Parquet tables against the canonical schemas.""" from __future__ import annotations import pyarrow as pa import pyarrow.compute as pc import pyarrow.parquet as pq from common import ensure_dirs, get_logger, load_config, p, utc_now, write_json from schema import ( AUTHORS_DIM, CITATION_EDGES, COUNTRY_COLLABORATION, COUNTRY_YEAR_COUNTS, INSTITUTIONS_DIM, INSTITUTION_ACTIVITY, SOURCES_DIM, TOPIC_GROWTH, TOPIC_YEAR_COUNTS, TOPICS_DIM, WORK_AUTHORS, WORK_INSTITUTIONS, WORK_TOPICS, WORKS_FULL, ) # rel -> (schema, required non-null columns, primary-key column or None) EXPECTED = { "data/works.parquet": (WORKS_FULL, ["work_id", "title", "publication_year"], "work_id"), "data/work_authors.parquet": (WORK_AUTHORS, ["work_id"], None), "data/work_institutions.parquet": (WORK_INSTITUTIONS, ["work_id", "institution_id"], None), "data/work_topics.parquet": (WORK_TOPICS, ["work_id", "topic_id"], None), "data/authors.parquet": (AUTHORS_DIM, ["author_id"], "author_id"), "data/institutions.parquet": (INSTITUTIONS_DIM, ["institution_id"], "institution_id"), "data/topics.parquet": (TOPICS_DIM, ["topic_id"], "topic_id"), "data/sources.parquet": (SOURCES_DIM, ["source_id"], "source_id"), "data/citation_edges.parquet": (CITATION_EDGES, ["citing_work_id", "cited_work_id"], None), "analytics/topic_year_counts.parquet": (TOPIC_YEAR_COUNTS, ["topic_id", "publication_year"], None), "analytics/topic_growth.parquet": (TOPIC_GROWTH, ["topic_id"], "topic_id"), "analytics/country_year_counts.parquet": (COUNTRY_YEAR_COUNTS, ["country_code", "publication_year"], None), "analytics/country_collaboration.parquet": (COUNTRY_COLLABORATION, ["country_a", "country_b"], None), "analytics/institution_activity.parquet": (INSTITUTION_ACTIVITY, ["institution_id", "publication_year"], None), } def run(cfg: dict | None = None) -> dict: cfg = cfg or load_config() ensure_dirs(cfg) logger = get_logger("diversa.validate", p(cfg, "logs") / "pipeline.log") root = p(cfg, "data").parent results = {"checked_at": utc_now(), "tables": {}, "errors": [], "warnings": []} for rel, (schema, required, pk) in EXPECTED.items(): path = root / rel entry = {"path": rel} if not path.exists(): entry["status"] = "missing" results["errors"].append(f"{rel} missing") results["tables"][rel] = entry continue pf = pq.ParquetFile(path) arrow = pf.schema_arrow names = arrow.names missing_cols = [c for c in schema.names if c not in names] extra_cols = [c for c in names if c not in schema.names] type_mismatch = [] for f in schema: if f.name in names: actual = arrow.field(f.name).type if actual != f.type and str(actual).replace("element", "item") != str(f.type): type_mismatch.append(f"{f.name}: {actual} != {f.type}") entry.update({"rows": pf.metadata.num_rows, "columns": len(names), "missing_columns": missing_cols, "extra_columns": extra_cols, "type_mismatch": type_mismatch}) if missing_cols: results["errors"].append(f"{rel} missing columns {missing_cols}") if type_mismatch: results["errors"].append(f"{rel} type mismatch {type_mismatch}") if extra_cols: results["warnings"].append(f"{rel} extra columns {extra_cols}") cols = [c for c in required if c in names] if cols: tbl = pq.read_table(path, columns=cols) for c in cols: nn = tbl.column(c).null_count if nn: results["errors"].append(f"{rel}:{c} has {nn} nulls") list_cols = [f.name for f in schema if pa.types.is_list(f.type) and f.name in names] for c in list_cols: flat = pc.list_flatten(pq.read_table(path, columns=[c]).column(c)) if flat.null_count: results["errors"].append( f"{rel}:{c} has {flat.null_count} null elements inside lists") if pk and pk in names: vals = pq.read_table(path, columns=[pk]).column(pk).to_pylist() dup = len(vals) - len(set(vals)) entry["duplicate_pk"] = dup if dup: results["errors"].append(f"{rel} has {dup} duplicate {pk}") entry["status"] = "ok" if not missing_cols and not type_mismatch else "schema_error" results["tables"][rel] = entry logger.info("validated %-45s rows=%-9s status=%s", rel, f"{entry.get('rows', 0):,}", entry["status"]) results["status"] = "pass" if not results["errors"] else "fail" write_json(p(cfg, "metadata") / "validation_report.json", results) logger.info("validation %s (%d errors, %d warnings)", results["status"], len(results["errors"]), len(results["warnings"])) return results if __name__ == "__main__": run()