"""``explicit-data`` — ingest, decontamination, rendering, and group assembly. Implemented subcommands: freeze-eval Freeze the evaluation registry write-once before any training ingest (``docs/02`` §3). Refuses to overwrite a frozen registry. ingest Normalize one training source to ``normalized//``. Hard-refuses MathVista (training-prohibited) and skips BBox DocVQA when its dual approval gate is not cleared. fingerprint Compute exact/pHash/MinHash fingerprints into a SQLite index (``docs/02`` §5.1). Operates on normalized items.jsonl files or, for eval, the registry's companion items file. decontaminate Match train fingerprints against the eval index and automatically reject exact and near duplicates. scan-plotqa-prefix Verify and summarize the pinned PlotQA source prefixes. build-certified-release Build the fixed C1 five-state train/evaluation release. replay-certificates Independently replay every persisted view certificate. The remaining subcommands are documented but not yet implemented: they exit 2 (never a silent success, per the runbook). """ from __future__ import annotations import argparse import json import sys from collections.abc import Callable, Mapping from pathlib import Path from typing import Any from .. import contamination, ingest from ..atomic_io import read_jsonl from ..config import ( ConfigError, ExperimentConfig, ResourcesManifest, load_config_pair, load_resources, ) from ..ingest import base as ingest_base from ..ingest.base import IngestError from ..logging_setup import get_logger from ..paths import data_root, repo_root from ..resources import load_approval from ._stub import dispatch _PROG = "explicit-data" logger = get_logger("data") _SUBCOMMANDS = { "freeze-eval": "Freeze the evaluation registry before any training ingest (P2).", "ingest": "Normalize a source dataset to the common item schema (P2).", "fingerprint": "Compute exact/pHash/MinHash fingerprints into SQLite (P3).", "decontaminate": "Reject/near-duplicate match train vs eval (P3).", "scan-plotqa-prefix": "Compile and count executable D15 PlotQA prefix rows.", "build-certified-release": "Build the fixed PlotQA C1 train/eval release.", "replay-certificates": "Replay every persisted certificate in one split.", "build-evi-core-release": "Build PlotQA+GQA+CLEVR EVI core v2.", "replay-evi-core-release": "Replay every certificate in EVI core v2.", "validate-evi-core-release": "Schema/admission-check EVI core v2.", "validate-full": "Teacher/verifier blind validation of FULL problems (P4/P7).", "propose-dependencies": "Teacher dependency/region proposal (P5).", "localize": "OCR/SAM/CV region localization (P5).", "render": "Deterministic intervention rendering (P6).", "blind-relabel": "Teacher/verifier blind re-solve of transformed views (P7).", "reconcile": "Reconcile solver labels into states (P7).", "build-groups": "Assemble intervention groups (P7).", "validate-groups": "Validate groups against schema + invariants (P7).", "manifest": "Build a dataset manifest (P7).", "sample-candidates": "Sample dry-run candidates (P6).", "build-pilot": "Build the accepted 2K pilot (P6).", "produce-silver": "Produce silver train at scale (P7).", } def _add_config_args(parser: argparse.ArgumentParser) -> None: parser.add_argument( "--resources", type=Path, default=repo_root() / "configs" / "resources.yaml", ) parser.add_argument( "--experiment", type=Path, default=repo_root() / "configs" / "experiment.yaml", ) def _utc_now() -> str: from datetime import UTC, datetime return datetime.now(tz=UTC).strftime("%Y-%m-%dT%H:%M:%SZ") class _Handled(Exception): """Internal control-flow signal that a nonzero exit has already been printed.""" def __init__(self, code: int) -> None: super().__init__() self.code = code def _load_pair( args: argparse.Namespace, ) -> tuple[ResourcesManifest, ExperimentConfig]: try: return load_config_pair(args.resources, args.experiment) except (ConfigError, FileNotFoundError) as exc: print(f"{_PROG}: config load failed: {exc}", file=sys.stderr) raise _Handled(1) from exc # --- freeze-eval ----------------------------------------------------------- def cmd_freeze_eval(argv: list[str]) -> int: parser = argparse.ArgumentParser(prog=f"{_PROG} freeze-eval") _add_config_args(parser) parser.add_argument( "--rows-dir", type=Path, required=True, help="directory holding ..jsonl native-row files.", ) parser.add_argument( "--image-root", type=Path, default=None, help="root directory for native image refs (visual eval sources).", ) parser.add_argument( "--output", type=Path, default=None, help="registry output (default /registry/evaluation_items.v1.jsonl).", ) parser.add_argument( "--force", action="store_true", help="overwrite an existing frozen registry." ) parser.add_argument( "--resume", action="store_true", help="verify an existing registry matches the computed freeze (idempotent).", ) args = parser.parse_args(argv) try: resources, experiment = _load_pair(args) except _Handled as exc: return exc.code plan = ingest.eval_freeze_plan(experiment) resolved_plan = [ ingest.EvalSourceSpec( name=spec.name, config=spec.config, split=spec.split if spec.from_gold else ingest.default_split_for(spec.name, resources), from_gold=spec.from_gold, ) for spec in plan ] output = args.output or (data_root() / "registry" / "evaluation_items.v1.jsonl") try: frozen = ingest.freeze_eval( resolved_plan, resources, rows_dir=args.rows_dir, image_root=args.image_root, output_path=output, force=args.force, resume=args.resume, ) except ingest.RegistryFrozenError as exc: print(f"{_PROG} freeze-eval: {exc}", file=sys.stderr) return 1 except ingest.IngestError as exc: print(f"{_PROG} freeze-eval: {exc}", file=sys.stderr) return 1 print( json.dumps( { "registry_path": str(frozen.path), "registry_sha256": frozen.sha256, "row_count": frozen.row_count, "sources": [s.name for s in resolved_plan], }, sort_keys=True, ) ) return 0 # --- ingest ---------------------------------------------------------------- def cmd_ingest(argv: list[str]) -> int: parser = argparse.ArgumentParser(prog=f"{_PROG} ingest") src_group = parser.add_mutually_exclusive_group(required=True) src_group.add_argument( "--source", help="structured source name (plotqa/geometry3k); reads from raw/.", ) src_group.add_argument("--resource", help="HF dataset resource logical name.") parser.add_argument("--split", required=True, help="source split to ingest.") parser.add_argument( "--rows", type=Path, default=None, help="native-row JSONL file for this source/split (HF --resource path).", ) parser.add_argument( "--image-root", type=Path, default=None, help="root directory for native image refs (HF --resource path).", ) parser.add_argument( "--raw-dir", type=Path, default=None, help="materialized raw dir for a structured --source (default /raw/).", ) parser.add_argument( "--config", default="default", help="source config name (MMMU: subject).", ) parser.add_argument("--approval", type=Path, default=None, help="resource_approval.json path.") parser.add_argument( "--resources", type=Path, default=repo_root() / "configs" / "resources.yaml", ) parser.add_argument( "--eval-registry", type=Path, default=None, help="frozen evaluation registry path (required for train ingest).", ) parser.add_argument( "--no-require-eval-registry", action="store_true", help="allow train ingest before the eval registry is frozen (testing only).", ) parser.add_argument( "--output", type=Path, default=None, help="output dir (default /normalized//).", ) parser.add_argument( "--config-sha256", default="", help="canonical config hash to record in the ingest manifest.", ) args = parser.parse_args(argv) try: resources = load_resources(args.resources) except (ConfigError, FileNotFoundError) as exc: print(f"{_PROG} ingest: resources load failed: {exc}", file=sys.stderr) return 1 # Structured-source path (PlotQA/Geometry3K C1): reads from a materialized # raw dir; --rows/--image-root do not apply. if args.source is not None: return _ingest_structured(args, resources) return _ingest_dataset(args, resources) def _ingest_structured(args: argparse.Namespace, resources: Any) -> int: name = args.source assert name is not None if name not in resources.structured_sources: print(f"{_PROG} ingest: unknown structured source {name!r}", file=sys.stderr) return 1 cfg = resources.structured_sources[name] revision = cfg.get("revision", "") raw_dir = args.raw_dir or (data_root() / "raw" / name) output = args.output or (data_root() / "normalized" / name / args.split) expected_sha256 = cfg.get("expected_sha256") or None try: result = ingest.ingest_structured_source( name, args.split, raw_dir, output, revision=revision, source_config=cfg, expected_sha256=expected_sha256, eval_registry_path=args.eval_registry, require_eval_registry=not args.no_require_eval_registry, config_sha256=args.config_sha256, created_at=_utc_now(), ) except ingest.IngestError as exc: print(f"{_PROG} ingest: {exc}", file=sys.stderr) return 1 print( json.dumps( { "source": result.source, "split": result.split, "written": result.written, "dropped": result.dropped, "output": str(result.output_path), }, sort_keys=True, ) ) return 0 def _ingest_dataset(args: argparse.Namespace, resources: Any) -> int: if args.resource not in resources.datasets: print(f"{_PROG} ingest: unknown resource {args.resource!r}", file=sys.stderr) return 1 revision = resources.datasets[args.resource].revision approval = load_approval(args.approval) if args.rows is None or not args.rows.exists(): print(f"{_PROG} ingest: rows file not found: {args.rows}", file=sys.stderr) return 1 rows = ingest.read_native_rows(args.rows) resolver = ingest_base.DirectoryImageResolver(args.image_root) if args.image_root else None if resolver is None and args.resource != "bbox_docvqa_train": print( f"{_PROG} ingest: --image-root is required for source {args.resource!r}", file=sys.stderr, ) return 1 output = args.output or (data_root() / "normalized" / args.resource / args.split) try: result = ingest.ingest_source( args.resource, args.split, rows, resolver, # type: ignore[arg-type] output, revision=revision, config=args.config, approval=approval, eval_registry_path=args.eval_registry, require_eval_registry=not args.no_require_eval_registry, config_sha256=args.config_sha256, created_at=_utc_now(), ) except ingest.IngestError as exc: print(f"{_PROG} ingest: {exc}", file=sys.stderr) return 1 print( json.dumps( { "source": result.source, "split": result.split, "written": result.written, "dropped": result.dropped, "output": str(result.output_path), }, sort_keys=True, ) ) return 0 # --- fingerprint ----------------------------------------------------------- def _collect_input_files(args: argparse.Namespace) -> list[Path]: if args.input is not None: path = Path(args.input) if path.is_dir(): return sorted(path.rglob("items.jsonl")) # A single items.jsonl (or a registry path whose companion is read later). return [path] if path.is_file() else [] return sorted(Path(args.input_root).rglob("items.jsonl")) def _is_registry_row(row: Mapping[str, Any]) -> bool: """A frozen registry row carries ``native_id`` but no ``question`` text.""" return "question" not in row and "native_id" in row def _pick_image_base(file_path: Path, rows: list[dict[str, Any]]) -> Path | None: """Auto-detect the image root for a file's rows, or None if text-only.""" for row in rows: paths = row.get("image_paths") or [] if paths: first = paths[0] for candidate in (file_path.parent, file_path.parent / "eval_images"): if (candidate / first).exists(): return candidate raise IngestError(f"cannot resolve image {first!r} for {file_path}; pass --image-base") return None def _make_resolver(base_dir: Path) -> Callable[[str], Path]: def resolve(ref: str) -> Path: path = base_dir / ref if not path.exists(): raise IngestError(f"image not found: {path}") return path return resolve def cmd_fingerprint(argv: list[str]) -> int: parser = argparse.ArgumentParser(prog=f"{_PROG} fingerprint") group = parser.add_mutually_exclusive_group(required=True) group.add_argument("--input", type=Path, help="items.jsonl file or directory.") group.add_argument("--input-root", type=Path, help="root to glob items.jsonl under.") parser.add_argument( "--image-base", type=Path, default=None, help="image root (auto-detected if omitted)." ) parser.add_argument("--db", type=Path, required=True, help="SQLite index output.") args = parser.parse_args(argv) files = _collect_input_files(args) if not files: print(f"{_PROG} fingerprint: no items.jsonl found", file=sys.stderr) return 1 fingerprints: list[contamination.Fingerprints] = [] sources: set[str] = set() for file_path in files: rows = [dict(r) for r in read_jsonl(file_path)] # A frozen registry has no text/pixels; use its companion items file when present. if rows and _is_registry_row(rows[0]): companion = file_path.with_name(file_path.stem + ".items.jsonl") if companion.exists(): rows = [dict(r) for r in read_jsonl(companion)] file_path = companion else: print( f"{_PROG} fingerprint: {file_path} is a registry without a companion " "items file; text/pHash fingerprints unavailable", file=sys.stderr, ) base_dir = ( args.image_base if args.image_base is not None else _pick_image_base(file_path, rows) ) resolve_image = _make_resolver(base_dir) if base_dir is not None else None try: for row in rows: fp = contamination.fingerprint_row(row, resolve_image=resolve_image) fingerprints.append(fp) sources.add(fp.source) except IngestError as exc: print(f"{_PROG} fingerprint: {exc}", file=sys.stderr) return 1 count = contamination.index.write_fingerprints(args.db, fingerprints) print( json.dumps( {"db": str(args.db), "row_count": count, "sources": sorted(sources)}, sort_keys=True ) ) return 0 # --- decontaminate --------------------------------------------------------- def cmd_decontaminate(argv: list[str]) -> int: parser = argparse.ArgumentParser(prog=f"{_PROG} decontaminate") parser.add_argument("--train-db", type=Path, required=True) parser.add_argument("--eval-db", type=Path, required=True) parser.add_argument("--output", type=Path, required=True, help="train allowlist JSONL.") parser.add_argument( "--near-duplicate-rejects", "--review-queue", dest="near_duplicate_rejects", type=Path, required=True, help="immutable auto-rejected near-duplicate JSONL (legacy alias: --review-queue).", ) args = parser.parse_args(argv) for label, path in (("train-db", args.train_db), ("eval-db", args.eval_db)): if not path.exists(): print(f"{_PROG} decontaminate: {label} not found: {path}", file=sys.stderr) return 1 summary = contamination.match.decontaminate_dbs( str(args.train_db), str(args.eval_db), allowlist_path=str(args.output), review_path=str(args.near_duplicate_rejects), ) # The full rejected list is available in the summary; print counts only. printable = {k: v for k, v in summary.items() if k != "rejected"} print(json.dumps(printable, sort_keys=True)) return 0 # --- fixed PlotQA C1 release ---------------------------------------------- def cmd_scan_plotqa_prefix(argv: list[str]) -> int: from ..datasets.plotqa_prefix import collect_plotqa_candidates parser = argparse.ArgumentParser(prog=f"{_PROG} scan-plotqa-prefix") parser.add_argument("--annotations", type=Path, required=True) parser.add_argument("--qa", type=Path, required=True) args = parser.parse_args(argv) try: result = collect_plotqa_candidates(args.annotations, args.qa) except (OSError, ValueError) as exc: print(f"{_PROG} scan-plotqa-prefix: {exc}", file=sys.stderr) return 1 print( json.dumps( { "accepted_candidates": len(result.candidates), "complete_annotation_items": result.complete_annotation_items, "complete_qa_items": result.complete_qa_items, "d15_items": result.d15_items, "rejection_counts": result.rejection_counts, }, sort_keys=True, ) ) return 0 def cmd_build_certified_release(argv: list[str]) -> int: from ..datasets.release import ( ReleaseError, build_plotqa_release, load_release_config, ) parser = argparse.ArgumentParser(prog=f"{_PROG} build-certified-release") parser.add_argument("--annotations", type=Path, required=True) parser.add_argument("--qa", type=Path, required=True) parser.add_argument("--output", type=Path, required=True) parser.add_argument( "--release-config", type=Path, default=repo_root() / "configs" / "release.plotqa-prefix.json", ) parser.add_argument( "--code-commit", required=True, help="clean 40-hex commit containing the exact generator implementation.", ) parser.add_argument( "--workers", type=int, default=8, help="Ordered generation worker processes (default: 8; output bytes are invariant).", ) args = parser.parse_args(argv) try: config = load_release_config(args.release_config) summary = build_plotqa_release( annotations_prefix=args.annotations, qa_prefix=args.qa, output_dir=args.output, pipeline_code_commit=args.code_commit, config=config, workers=args.workers, ) except (OSError, ValueError, ReleaseError) as exc: print(f"{_PROG} build-certified-release: {exc}", file=sys.stderr) return 1 print(json.dumps(summary.__dict__, sort_keys=True)) return 0 def cmd_replay_certificates(argv: list[str]) -> int: from ..certificates.replay import replay_dataset parser = argparse.ArgumentParser(prog=f"{_PROG} replay-certificates") parser.add_argument("--dataset", type=Path, required=True) parser.add_argument("--report", type=Path, default=None) parser.add_argument( "--workers", type=int, default=8, help="Ordered certificate-replay worker processes (default: 8).", ) args = parser.parse_args(argv) try: results = replay_dataset(args.dataset, workers=args.workers) except (OSError, ValueError) as exc: print(f"{_PROG} replay-certificates: {exc}", file=sys.stderr) return 1 failures = [ {"view_dir": row.view_dir, "errors": list(row.errors)} for row in results if not row.ok ] report = { "dataset": str(args.dataset), "view_count": len(results), "passed": len(results) - len(failures), "failed": len(failures), "failures": failures, } if args.report is not None: from ..atomic_io import atomic_write_json atomic_write_json(args.report, report) print(json.dumps({key: value for key, value in report.items() if key != "failures"})) return 1 if failures else 0 # --- multi-domain EVI core release ---------------------------------------- def cmd_build_evi_core_release(argv: list[str]) -> int: from ..datasets.evi_core_release import ( EviCoreReleaseError, build_evi_core_release, load_evi_core_release_config, ) parser = argparse.ArgumentParser(prog=f"{_PROG} build-evi-core-release") parser.add_argument("--plotqa-release", type=Path, required=True) parser.add_argument("--gqa-train-questions", type=Path, required=True) parser.add_argument("--gqa-train-scene-graphs", type=Path, required=True) parser.add_argument("--gqa-val-questions", type=Path, required=True) parser.add_argument("--gqa-val-scene-graphs", type=Path, required=True) parser.add_argument("--gqa-image-cache", type=Path, required=True) parser.add_argument("--clevr-train-questions", type=Path, required=True) parser.add_argument("--clevr-train-scenes", type=Path, required=True) parser.add_argument("--clevr-val-questions", type=Path, required=True) parser.add_argument("--clevr-val-scenes", type=Path, required=True) parser.add_argument("--clevr-blender-executable", type=Path, required=True) parser.add_argument("--clevr-dataset-gen-root", type=Path, required=True) parser.add_argument("--clevr-blender-runtime-library-dir", type=Path, default=None) parser.add_argument("--output", type=Path, required=True) parser.add_argument( "--release-config", type=Path, default=repo_root() / "configs" / "release.evi-core-v2.json", ) parser.add_argument("--code-commit", required=True) parser.add_argument("--workers", type=int, default=8) parser.add_argument("--download-workers", type=int, default=24) args = parser.parse_args(argv) try: summary = build_evi_core_release( plotqa_release=args.plotqa_release, gqa_train_questions=args.gqa_train_questions, gqa_train_scene_graphs=args.gqa_train_scene_graphs, gqa_val_questions=args.gqa_val_questions, gqa_val_scene_graphs=args.gqa_val_scene_graphs, gqa_image_cache=args.gqa_image_cache, clevr_train_questions=args.clevr_train_questions, clevr_train_scenes=args.clevr_train_scenes, clevr_val_questions=args.clevr_val_questions, clevr_val_scenes=args.clevr_val_scenes, clevr_blender_executable=args.clevr_blender_executable, clevr_dataset_gen_root=args.clevr_dataset_gen_root, clevr_blender_runtime_library_dir=args.clevr_blender_runtime_library_dir, output_dir=args.output, pipeline_code_commit=args.code_commit, config=load_evi_core_release_config(args.release_config), workers=args.workers, download_workers=args.download_workers, ) except (OSError, ValueError, EviCoreReleaseError) as exc: print(f"{_PROG} build-evi-core-release: {exc}", file=sys.stderr) return 1 print(json.dumps(summary.__dict__, sort_keys=True)) return 0 def cmd_replay_evi_core_release(argv: list[str]) -> int: from ..datasets.evi_core_release import replay_evi_core_release parser = argparse.ArgumentParser(prog=f"{_PROG} replay-evi-core-release") parser.add_argument("--release", type=Path, required=True) parser.add_argument("--workers", type=int, default=8) parser.add_argument("--report", type=Path, default=None) args = parser.parse_args(argv) try: results = replay_evi_core_release(args.release, workers=args.workers) except (OSError, ValueError) as exc: print(f"{_PROG} replay-evi-core-release: {exc}", file=sys.stderr) return 1 failures = [ {"view_dir": row.view_dir, "errors": list(row.errors)} for row in results if not row.ok ] report = { "release": str(args.release), "view_count": len(results), "passed": len(results) - len(failures), "failed": len(failures), "failures": failures, } if args.report is not None: from ..atomic_io import atomic_write_json atomic_write_json(args.report, report) print(json.dumps({key: value for key, value in report.items() if key != "failures"})) return 1 if failures else 0 def cmd_validate_evi_core_release(argv: list[str]) -> int: from ..datasets.evi_core_release import ( EviCoreReleaseError, validate_evi_core_release, ) parser = argparse.ArgumentParser(prog=f"{_PROG} validate-evi-core-release") parser.add_argument("--release", type=Path, required=True) args = parser.parse_args(argv) try: counts = validate_evi_core_release(args.release) except (EviCoreReleaseError, OSError, ValueError) as exc: print(f"{_PROG} validate-evi-core-release: {exc}", file=sys.stderr) return 1 print( json.dumps( { "release": str(args.release), "group_counts": counts, "validation_mode": "structural_no_content_hash_replay", }, sort_keys=True, ) ) return 0 _IMPLEMENTATIONS = { "freeze-eval": cmd_freeze_eval, "ingest": cmd_ingest, "fingerprint": cmd_fingerprint, "decontaminate": cmd_decontaminate, "scan-plotqa-prefix": cmd_scan_plotqa_prefix, "build-certified-release": cmd_build_certified_release, "replay-certificates": cmd_replay_certificates, "build-evi-core-release": cmd_build_evi_core_release, "replay-evi-core-release": cmd_replay_evi_core_release, "validate-evi-core-release": cmd_validate_evi_core_release, } def main(argv: list[str] | None = None) -> int: if argv is None: argv = sys.argv[1:] return dispatch(_PROG, argv, _SUBCOMMANDS, _IMPLEMENTATIONS) if __name__ == "__main__": raise SystemExit(main())