diff --git a/verify_logs/scikit-learn__scikit-learn-10297_log.txt b/verify_logs/scikit-learn__scikit-learn-10297_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9ba223238fd2472af140cbf8ca4d66bb0208196 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-10297_log.txt @@ -0,0 +1,568 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/linear_model/ridge.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 2315c56f749fb1f60ddad42130e59e2e957c9a75 +Author: SWE-bench +Date: Wed Sep 10 15:19:14 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff b90661d6a46aa3619d3eec94d5281f5888add501 +diff --git a/sklearn/linear_model/ridge.py b/sklearn/linear_model/ridge.py +index 911c74ae3..6469cdbcf 100644 +--- a/sklearn/linear_model/ridge.py ++++ b/sklearn/linear_model/ridge.py +@@ -1301,6 +1301,12 @@ class RidgeClassifierCV(LinearClassifierMixin, _BaseRidgeCV): + weights inversely proportional to class frequencies in the input data + as ``n_samples / (n_classes * np.bincount(y))`` + ++ store_cv_values : boolean, default=False ++ Flag indicating if the cross-validation values corresponding to ++ each alpha should be stored in the `cv_values_` attribute (see ++ below). This flag is only compatible with `cv=None` (i.e. using ++ Generalized Cross-Validation). ++ + Attributes + ---------- + cv_values_ : array, shape = [n_samples, n_alphas] or \ +@@ -1333,10 +1339,11 @@ class RidgeClassifierCV(LinearClassifierMixin, _BaseRidgeCV): + advantage of the multi-variate response support in Ridge. + """ + def __init__(self, alphas=(0.1, 1.0, 10.0), fit_intercept=True, +- normalize=False, scoring=None, cv=None, class_weight=None): ++ normalize=False, scoring=None, cv=None, class_weight=None, ++ store_cv_values=False): + super(RidgeClassifierCV, self).__init__( + alphas=alphas, fit_intercept=fit_intercept, normalize=normalize, +- scoring=scoring, cv=cv) ++ scoring=scoring, cv=cv, store_cv_values=store_cv_values) + self.class_weight = class_weight + + def fit(self, X, y, sample_weight=None): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file '/tmp/pip-pip-egg-info-sg06m3rt/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.20.dev0 + Uninstalling scikit-learn-0.20.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.20.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpn7dzkchd/tmp + creating /tmp/tmpn7dzkchd/tmp/tmpn7dzkchd + compile options: '-c' + gcc: /tmp/tmpn7dzkchd/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpn7dzkchd/tmp/tmpn7dzkchd/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpn7dzkchd/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.20.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. + Warning: Subpackage 'sklearn.metrics/cluster' configuration returned as 'sklearn.metrics.cluster' +Successfully installed scikit-learn-0.20.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge +PASSED sklearn/linear_model/tests/test_ridge.py::test_primal_dual_relationship +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_singular +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_regression_sample_weights +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_sample_weights +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_shapes +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_intercept +PASSED sklearn/linear_model/tests/test_ridge.py::test_toy_ridge_object +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_vs_lstsq +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_individual_penalties +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_cv_sparse_svd +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_sparse_svd +PASSED sklearn/linear_model/tests/test_ridge.py::test_class_weights +PASSED sklearn/linear_model/tests/test_ridge.py::test_class_weight_vs_sample_weight +PASSED sklearn/linear_model/tests/test_ridge.py::test_class_weights_cv +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridgecv_store_cv_values +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_classifier_cv_store_cv_values +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridgecv_sample_weight +PASSED sklearn/linear_model/tests/test_ridge.py::test_raises_value_error_if_sample_weights_greater_than_1d +PASSED sklearn/linear_model/tests/test_ridge.py::test_sparse_design_with_sample_weights +PASSED sklearn/linear_model/tests/test_ridge.py::test_raises_value_error_if_solver_not_supported +PASSED sklearn/linear_model/tests/test_ridge.py::test_sparse_cg_max_iter +PASSED sklearn/linear_model/tests/test_ridge.py::test_n_iter +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_fit_intercept_sparse +PASSED sklearn/linear_model/tests/test_ridge.py::test_errors_and_values_helper +PASSED sklearn/linear_model/tests/test_ridge.py::test_errors_and_values_svd_helper +PASSED sklearn/linear_model/tests/test_ridge.py::test_ridge_classifier_no_support_multilabel +PASSED sklearn/linear_model/tests/test_ridge.py::test_dtype_match +PASSED sklearn/linear_model/tests/test_ridge.py::test_dtype_match_cholesky +XFAIL sklearn/linear_model/tests/test_ridge.py::test_dense_sparse + reason: [NOTRUN] yield tests were removed in pytest 4.0 - test_dense_sparse will be ignored +================== 29 passed, 1 xfailed, 22 warnings in 0.87s ================== ++ : '>>>>> End Test Output' ++ git checkout b90661d6a46aa3619d3eec94d5281f5888add501 sklearn/linear_model/tests/test_ridge.py +Updated 1 path from d803dea57 diff --git a/verify_logs/scikit-learn__scikit-learn-10844_log.txt b/verify_logs/scikit-learn__scikit-learn-10844_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6093c5712556302ec034206765521f3b87dfedac --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-10844_log.txt @@ -0,0 +1,535 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/metrics/cluster/supervised.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 77d7c28024307c6f4f0e0db9fb1e1ea1080fd3ac +Author: SWE-bench +Date: Wed Sep 10 15:19:13 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 97523985b39ecde369d83352d7c3baf403b60a22 +diff --git a/sklearn/metrics/cluster/supervised.py b/sklearn/metrics/cluster/supervised.py +index a987778ae..9bcca75a2 100644 +--- a/sklearn/metrics/cluster/supervised.py ++++ b/sklearn/metrics/cluster/supervised.py +@@ -856,7 +856,7 @@ def fowlkes_mallows_score(labels_true, labels_pred, sparse=False): + tk = np.dot(c.data, c.data) - n_samples + pk = np.sum(np.asarray(c.sum(axis=0)).ravel() ** 2) - n_samples + qk = np.sum(np.asarray(c.sum(axis=1)).ravel() ** 2) - n_samples +- return tk / np.sqrt(pk * qk) if tk != 0. else 0. ++ return np.sqrt(tk / pk) * np.sqrt(tk / qk) if tk != 0. else 0. + + + def entropy(labels): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file '/tmp/pip-pip-egg-info-qi_cul_d/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.20.dev0 + Uninstalling scikit-learn-0.20.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.20.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp3ksh6hdv/tmp + creating /tmp/tmp3ksh6hdv/tmp/tmp3ksh6hdv + compile options: '-c' + gcc: /tmp/tmp3ksh6hdv/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp3ksh6hdv/tmp/tmp3ksh6hdv/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp3ksh6hdv/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.20.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.20.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_error_messages_on_wrong_input +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_perfect_matches +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_homogeneous_but_not_complete_labeling +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_complete_but_not_homogeneous_labeling +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_not_complete_and_not_homogeneous_labeling +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_non_consicutive_labels +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_adjustment_for_chance +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_adjusted_mutual_info_score +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_expected_mutual_info_overflow +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_int_overflow_mutual_info_fowlkes_mallows_score +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_entropy +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_contingency_matrix +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_contingency_matrix_sparse +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_exactly_zero_info_score +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_v_measure_and_mutual_information +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_fowlkes_mallows_score +PASSED sklearn/metrics/cluster/tests/test_supervised.py::test_fowlkes_mallows_score_properties +======================== 17 passed, 4 warnings in 0.38s ======================== ++ : '>>>>> End Test Output' ++ git checkout 97523985b39ecde369d83352d7c3baf403b60a22 sklearn/metrics/cluster/tests/test_supervised.py +Updated 1 path from 7d8afc003 diff --git a/verify_logs/scikit-learn__scikit-learn-10908_log.txt b/verify_logs/scikit-learn__scikit-learn-10908_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..c7423f883eda8562bbc279616c97ff4ed3d90d1b --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-10908_log.txt @@ -0,0 +1,570 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/feature_extraction/text.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 98e7eddc7fa955f128bdfe653c7a14abdd223022 +Author: SWE-bench +Date: Wed Sep 10 15:21:53 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 67d06b18c68ee4452768f8a1e868565dd4354abf +diff --git a/sklearn/feature_extraction/text.py b/sklearn/feature_extraction/text.py +index 9b1ebd632..d282cb414 100644 +--- a/sklearn/feature_extraction/text.py ++++ b/sklearn/feature_extraction/text.py +@@ -993,6 +993,8 @@ class CountVectorizer(BaseEstimator, VectorizerMixin): + + def get_feature_names(self): + """Array mapping from feature integer indices to feature name""" ++ if not hasattr(self, 'vocabulary_'): ++ self._validate_vocabulary() + self._check_vocabulary() + + return [t for t, i in sorted(six.iteritems(self.vocabulary_), ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file '/tmp/pip-pip-egg-info-wuvj6hwo/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.20.dev0 + Uninstalling scikit-learn-0.20.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.20.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp76lxw6rr/tmp + creating /tmp/tmp76lxw6rr/tmp/tmp76lxw6rr + compile options: '-c' + gcc: /tmp/tmp76lxw6rr/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp76lxw6rr/tmp/tmp76lxw6rr/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp76lxw6rr/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.20.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.20.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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sklearn/feature_extraction/tests/test_text.py::test_hashing_vectorizer +PASSED sklearn/feature_extraction/tests/test_text.py::test_feature_names +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_max_features +PASSED sklearn/feature_extraction/tests/test_text.py::test_count_vectorizer_max_features +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_max_df +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_min_df +PASSED sklearn/feature_extraction/tests/test_text.py::test_count_binary_occurrences +PASSED sklearn/feature_extraction/tests/test_text.py::test_hashed_binary_occurrences +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_inverse_transform +PASSED sklearn/feature_extraction/tests/test_text.py::test_count_vectorizer_pipeline_grid_selection +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_pipeline_grid_selection +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_pipeline_cross_validation +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_unicode +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_vectorizer_with_fixed_vocabulary +PASSED sklearn/feature_extraction/tests/test_text.py::test_pickling_vectorizer +PASSED sklearn/feature_extraction/tests/test_text.py::test_countvectorizer_vocab_sets_when_pickling +PASSED sklearn/feature_extraction/tests/test_text.py::test_countvectorizer_vocab_dicts_when_pickling +PASSED sklearn/feature_extraction/tests/test_text.py::test_stop_words_removal +PASSED sklearn/feature_extraction/tests/test_text.py::test_pickling_transformer +PASSED sklearn/feature_extraction/tests/test_text.py::test_non_unique_vocab +PASSED sklearn/feature_extraction/tests/test_text.py::test_hashingvectorizer_nan_in_docs +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidfvectorizer_binary +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidfvectorizer_export_idf +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_vocab_clone +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_string_object_as_input +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec0] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec1] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec2] +======================== 48 passed, 4 warnings in 1.58s ======================== ++ : '>>>>> End Test Output' ++ git checkout 67d06b18c68ee4452768f8a1e868565dd4354abf sklearn/feature_extraction/tests/test_text.py +Updated 1 path from d7e9da7c1 diff --git a/verify_logs/scikit-learn__scikit-learn-11310_log.txt b/verify_logs/scikit-learn__scikit-learn-11310_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..107d8af2136c55c46c4aaaddd1c8d084a8c8adb6 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-11310_log.txt @@ -0,0 +1,692 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/model_selection/_search.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 04abc320ae56adef118d50cb64893580c2b29305 +Author: SWE-bench +Date: Wed Sep 10 15:20:13 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 553b5fb8f84ba05c8397f26dd079deece2b05029 +diff --git a/sklearn/model_selection/_search.py b/sklearn/model_selection/_search.py +index 99d6096af..a55baff17 100644 +--- a/sklearn/model_selection/_search.py ++++ b/sklearn/model_selection/_search.py +@@ -17,6 +17,7 @@ from collections import Mapping, namedtuple, defaultdict, Sequence, Iterable + from functools import partial, reduce + from itertools import product + import operator ++import time + import warnings + + import numpy as np +@@ -766,11 +767,12 @@ class BaseSearchCV(six.with_metaclass(ABCMeta, BaseEstimator, + if self.refit: + self.best_estimator_ = clone(base_estimator).set_params( + **self.best_params_) ++ start = time.time() + if y is not None: + self.best_estimator_.fit(X, y, **fit_params) + else: + self.best_estimator_.fit(X, **fit_params) +- ++ self.refit_time_ = time.time() - start + # Store the only scorer not as a dict for single metric evaluation + self.scorer_ = scorers if self.multimetric_ else scorers['score'] + +@@ -1066,6 +1068,10 @@ class GridSearchCV(BaseSearchCV): + For multi-metric evaluation, this is present only if ``refit`` is + specified. + ++ refit_time_ : float ++ Time to refit the best estimator on the entire dataset, ++ in seconds. Not available if ``refit=False``. ++ + scorer_ : function or a dict + Scorer function used on the held out data to choose the best + parameters for the model. +@@ -1377,6 +1383,9 @@ class RandomizedSearchCV(BaseSearchCV): + For multi-metric evaluation, this is not available if ``refit`` is + ``False``. See ``refit`` parameter for more information. + ++ refit_time_ : float ++ Time to refit the best estimator on the entire dataset, ++ in seconds. Not available if ``refit=False``. + scorer_ : function or a dict + Scorer function used on the held out data to choose the best + parameters for the model. ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file '/tmp/pip-pip-egg-info-pb8djbgt/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.20.dev0 + Uninstalling scikit-learn-0.20.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.20.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp1qxf7jfl/tmp + creating /tmp/tmp1qxf7jfl/tmp/tmp1qxf7jfl + compile options: '-c' + gcc: /tmp/tmp1qxf7jfl/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp1qxf7jfl/tmp/tmp1qxf7jfl/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp1qxf7jfl/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.20.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.20.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 50%] +........................... [100%] + +=================================== FAILURES =================================== +_ test_validate_parameter_grid_input[0-TypeError-Parameter grid is not a dict or a list (0)] _ + +input = 0, error_type = +error_message = 'Parameter grid is not a dict or a list (0)' + + @pytest.mark.parametrize( + "input, error_type, error_message", + [(0, TypeError, 'Parameter grid is not a dict or a list (0)'), + ([{'foo': [0]}, 0], TypeError, 'Parameter grid is not a dict (0)'), + ({'foo': 0}, TypeError, "Parameter grid value is not iterable " + "(key='foo', value=0)")] + ) + def test_validate_parameter_grid_input(input, error_type, error_message): +> with pytest.raises(error_type, message=error_message): +E TypeError: Unexpected keyword arguments passed to pytest.raises: message +E Use context-manager form instead? + +sklearn/model_selection/tests/test_search.py:139: TypeError +_ test_validate_parameter_grid_input[input1-TypeError-Parameter grid is not a dict (0)] _ + +input = [{'foo': [0]}, 0], error_type = +error_message = 'Parameter grid is not a dict (0)' + + @pytest.mark.parametrize( + "input, error_type, error_message", + [(0, TypeError, 'Parameter grid is not a dict or a list (0)'), + ([{'foo': [0]}, 0], TypeError, 'Parameter grid is not a dict (0)'), + ({'foo': 0}, TypeError, "Parameter grid value is not iterable " + "(key='foo', value=0)")] + ) + def test_validate_parameter_grid_input(input, error_type, error_message): +> with pytest.raises(error_type, message=error_message): +E TypeError: Unexpected keyword arguments passed to pytest.raises: message +E Use context-manager form instead? + +sklearn/model_selection/tests/test_search.py:139: TypeError +_ test_validate_parameter_grid_input[input2-TypeError-Parameter grid value is not iterable (key='foo', value=0)] _ + +input = {'foo': 0}, error_type = +error_message = "Parameter grid value is not iterable (key='foo', value=0)" + + @pytest.mark.parametrize( + "input, error_type, error_message", + [(0, TypeError, 'Parameter grid is not a dict or a list (0)'), + ([{'foo': [0]}, 0], TypeError, 'Parameter grid is not a dict (0)'), + ({'foo': 0}, TypeError, "Parameter grid value is not iterable " + "(key='foo', value=0)")] + ) + def test_validate_parameter_grid_input(input, error_type, error_message): +> with pytest.raises(error_type, message=error_message): +E TypeError: Unexpected keyword arguments passed to pytest.raises: message +E Use context-manager form instead? + +sklearn/model_selection/tests/test_search.py:139: TypeError +==================================== PASSES ==================================== +_______________________________ test_grid_search _______________________________ +----------------------------- Captured stderr call ----------------------------- +[Parallel(n_jobs=1)]: Done 1 out of 1 | elapsed: 0.0s remaining: 0.0s +[Parallel(n_jobs=1)]: Done 2 out of 2 | elapsed: 0.0s remaining: 0.0s +[Parallel(n_jobs=1)]: Done 9 out of 9 | elapsed: 0.0s finished +_________________ test_transform_inverse_transform_round_trip __________________ +----------------------------- Captured stdout call ----------------------------- +Fitting 3 folds for each of 3 candidates, totalling 9 fits +[CV] foo_param=1 ..................................................... +[CV] ........................... foo_param=1, score=0.0, total= 0.0s +[CV] foo_param=1 ..................................................... +[CV] ........................... foo_param=1, score=0.0, total= 0.0s +[CV] foo_param=1 ..................................................... +[CV] ........................... foo_param=1, score=0.0, total= 0.0s +[CV] foo_param=2 ..................................................... +[CV] ........................... foo_param=2, score=1.0, total= 0.0s +[CV] foo_param=2 ..................................................... +[CV] ........................... foo_param=2, score=1.0, total= 0.0s +[CV] foo_param=2 ..................................................... +[CV] ........................... foo_param=2, score=1.0, total= 0.0s +[CV] foo_param=3 ..................................................... +[CV] ........................... foo_param=3, score=1.0, total= 0.0s +[CV] foo_param=3 ..................................................... +[CV] ........................... foo_param=3, score=1.0, total= 0.0s +[CV] foo_param=3 ..................................................... +[CV] ........................... foo_param=3, score=1.0, total= 0.0s +----------------------------- Captured stderr call ----------------------------- +[Parallel(n_jobs=1)]: Done 1 out of 1 | elapsed: 0.0s remaining: 0.0s +[Parallel(n_jobs=1)]: Done 2 out of 2 | elapsed: 0.0s remaining: 0.0s +[Parallel(n_jobs=1)]: Done 9 out of 9 | elapsed: 0.0s finished +=========================== short test summary info ============================ +PASSED sklearn/model_selection/tests/test_search.py::test_parameter_grid +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_with_fit_params +PASSED sklearn/model_selection/tests/test_search.py::test_random_search_with_fit_params +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_fit_params_deprecation +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_fit_params_two_places +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_no_score +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_score_method +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_groups +PASSED sklearn/model_selection/tests/test_search.py::test_return_train_score_warn +PASSED sklearn/model_selection/tests/test_search.py::test_classes__property +PASSED sklearn/model_selection/tests/test_search.py::test_trivial_cv_results_attr +PASSED sklearn/model_selection/tests/test_search.py::test_no_refit +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_error +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_one_grid_point +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_when_param_grid_includes_range +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_bad_param_grid +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_sparse +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_sparse_scoring +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_precomputed_kernel +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_precomputed_kernel_error_nonsquare +PASSED sklearn/model_selection/tests/test_search.py::test_refit +PASSED sklearn/model_selection/tests/test_search.py::test_gridsearch_nd +PASSED sklearn/model_selection/tests/test_search.py::test_X_as_list +PASSED sklearn/model_selection/tests/test_search.py::test_y_as_list +PASSED sklearn/model_selection/tests/test_search.py::test_pandas_input +PASSED sklearn/model_selection/tests/test_search.py::test_unsupervised_grid_search +PASSED sklearn/model_selection/tests/test_search.py::test_gridsearch_no_predict +PASSED sklearn/model_selection/tests/test_search.py::test_param_sampler +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_cv_results +PASSED sklearn/model_selection/tests/test_search.py::test_random_search_cv_results +PASSED sklearn/model_selection/tests/test_search.py::test_search_iid_param +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_cv_results_multimetric +PASSED sklearn/model_selection/tests/test_search.py::test_random_search_cv_results_multimetric +PASSED sklearn/model_selection/tests/test_search.py::test_search_cv_results_rank_tie_breaking +PASSED sklearn/model_selection/tests/test_search.py::test_search_cv_results_none_param +PASSED sklearn/model_selection/tests/test_search.py::test_search_cv_timing +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_correct_score_results +PASSED sklearn/model_selection/tests/test_search.py::test_fit_grid_point +PASSED sklearn/model_selection/tests/test_search.py::test_pickle +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_with_multioutput_data +PASSED sklearn/model_selection/tests/test_search.py::test_predict_proba_disabled +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_allows_nans +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_failing_classifier +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_failing_classifier_raise +PASSED sklearn/model_selection/tests/test_search.py::test_parameters_sampler_replacement +PASSED sklearn/model_selection/tests/test_search.py::test_stochastic_gradient_loss_param +PASSED sklearn/model_selection/tests/test_search.py::test_search_train_scores_set_to_false +PASSED sklearn/model_selection/tests/test_search.py::test_grid_search_cv_splits_consistency +PASSED sklearn/model_selection/tests/test_search.py::test_transform_inverse_transform_round_trip +PASSED sklearn/model_selection/tests/test_search.py::test_deprecated_grid_search_iid +FAILED sklearn/model_selection/tests/test_search.py::test_validate_parameter_grid_input[0-TypeError-Parameter grid is not a dict or a list (0)] +FAILED sklearn/model_selection/tests/test_search.py::test_validate_parameter_grid_input[input1-TypeError-Parameter grid is not a dict (0)] +FAILED sklearn/model_selection/tests/test_search.py::test_validate_parameter_grid_input[input2-TypeError-Parameter grid value is not iterable (key='foo', value=0)] +================== 3 failed, 51 passed, 158 warnings in 2.90s ================== ++ : '>>>>> End Test Output' ++ git checkout 553b5fb8f84ba05c8397f26dd079deece2b05029 sklearn/model_selection/tests/test_search.py +Updated 1 path from 805b9bb52 diff --git a/verify_logs/scikit-learn__scikit-learn-11578_log.txt b/verify_logs/scikit-learn__scikit-learn-11578_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..8b68ab42cd4eff1ec6499eb3f9da439e5edc5789 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-11578_log.txt @@ -0,0 +1,614 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/linear_model/logistic.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 551e6f60f3ada6901f7f473a35404c1fe7eda874 +Author: SWE-bench +Date: Wed Sep 10 15:21:26 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff dd69361a0d9c6ccde0d2353b00b86e0e7541a3e3 +diff --git a/sklearn/linear_model/logistic.py b/sklearn/linear_model/logistic.py +index e4ea696ce..faefd80a0 100644 +--- a/sklearn/linear_model/logistic.py ++++ b/sklearn/linear_model/logistic.py +@@ -922,7 +922,7 @@ def _log_reg_scoring_path(X, y, train, test, pos_class=None, Cs=10, + check_input=False, max_squared_sum=max_squared_sum, + sample_weight=sample_weight) + +- log_reg = LogisticRegression(fit_intercept=fit_intercept) ++ log_reg = LogisticRegression(fit_intercept=fit_intercept, multi_class=multi_class) + + # The score method of Logistic Regression has a classes_ attribute. + if multi_class == 'ovr': ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file '/tmp/pip-pip-egg-info-n_g2vsr9/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.20.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.20.dev0 + Uninstalling scikit-learn-0.20.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.20.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpa93_cblm/tmp + creating /tmp/tmpa93_cblm/tmp/tmpa93_cblm + compile options: '-c' + gcc: /tmp/tmpa93_cblm/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpa93_cblm/tmp/tmpa93_cblm/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpa93_cblm/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._optics_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + adding license file 'AUTHORS.rst' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.20.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.20.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 29%] +.................................................................. [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_2_classes +PASSED sklearn/linear_model/tests/test_logistic.py::test_error +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_mock_scorer +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_score_does_not_warn_by_default +PASSED sklearn/linear_model/tests/test_logistic.py::test_lr_liblinear_warning +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_3_classes +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_iris +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_check_solver_option[LogisticRegression] +PASSED sklearn/linear_model/tests/test_logistic.py::test_check_solver_option[LogisticRegressionCV] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_binary[lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_binary[newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_binary[sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_binary[saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_binary_probabilities +PASSED sklearn/linear_model/tests/test_logistic.py::test_sparsify +PASSED sklearn/linear_model/tests/test_logistic.py::test_inconsistent_input +PASSED sklearn/linear_model/tests/test_logistic.py::test_write_parameters +PASSED sklearn/linear_model/tests/test_logistic.py::test_nan +PASSED sklearn/linear_model/tests/test_logistic.py::test_consistency_path +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_path_convergence_fail +PASSED sklearn/linear_model/tests/test_logistic.py::test_liblinear_dual_random_state +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_loss_and_grad +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_grad_hess +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_multinomial_score[accuracy-multiclass_agg_list0] +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_multinomial_score[precision-multiclass_agg_list1] +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_multinomial_score[f1-multiclass_agg_list2] +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_multinomial_score[neg_log_loss-multiclass_agg_list3] +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_multinomial_score[recall-multiclass_agg_list4] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_logistic_regression_string_inputs +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_sparse +PASSED sklearn/linear_model/tests/test_logistic.py::test_intercept_logistic_helper +PASSED sklearn/linear_model/tests/test_logistic.py::test_ovr_multinomial_iris +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_solvers +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_solvers_multiclass +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regressioncv_class_weights +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_sample_weights +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_class_weights +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_regression_multinomial +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_grad_hess +PASSED sklearn/linear_model/tests/test_logistic.py::test_liblinear_decision_function_zero +PASSED sklearn/linear_model/tests/test_logistic.py::test_liblinear_logregcv_sparse +PASSED sklearn/linear_model/tests/test_logistic.py::test_saga_sparse +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_intercept_scaling +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_intercept_scaling_zero +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_l1 +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_l1_sparse_data +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_cv_penalty +PASSED sklearn/linear_model/tests/test_logistic.py::test_logreg_predict_proba_multinomial +PASSED sklearn/linear_model/tests/test_logistic.py::test_max_iter +PASSED sklearn/linear_model/tests/test_logistic.py::test_n_iter[newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_n_iter[liblinear] +PASSED sklearn/linear_model/tests/test_logistic.py::test_n_iter[sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_n_iter[saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_n_iter[lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-True-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-True-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-True-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-True-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-False-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-False-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-False-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-True-False-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-True-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-True-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-True-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-True-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-False-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-False-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-False-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[ovr-False-False-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-True-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-True-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-True-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-True-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-False-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-False-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-False-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-True-False-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-True-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-True-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-True-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-True-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-False-newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-False-sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-False-saga] +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start[multinomial-False-False-lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_saga_vs_liblinear +PASSED sklearn/linear_model/tests/test_logistic.py::test_dtype_match +PASSED sklearn/linear_model/tests/test_logistic.py::test_warm_start_converge_LR +======================= 94 passed, 26 warnings in 3.15s ======================== ++ : '>>>>> End Test Output' ++ git checkout dd69361a0d9c6ccde0d2353b00b86e0e7541a3e3 sklearn/linear_model/tests/test_logistic.py +Updated 1 path from 980a2ac1c diff --git a/verify_logs/scikit-learn__scikit-learn-12585_log.txt b/verify_logs/scikit-learn__scikit-learn-12585_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..b25792d9743ee56cb1032708f725f5b53009a7b4 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-12585_log.txt @@ -0,0 +1,541 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/base.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 14087fb890ccdad4172daac710ec9134685a8e79 +Author: SWE-bench +Date: Wed Sep 10 15:20:52 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff bfc4a566423e036fbdc9fb02765fd893e4860c85 +diff --git a/sklearn/base.py b/sklearn/base.py +index 56ffb18bf..70c9837f6 100644 +--- a/sklearn/base.py ++++ b/sklearn/base.py +@@ -56,6 +56,9 @@ def clone(estimator, safe=True): + "it does not seem to be a scikit-learn estimator " + "as it does not implement a 'get_params' methods." + % (repr(estimator), type(estimator))) ++ elif isinstance(estimator, type): ++ # Estimator class (not instance) - always return a deep copy ++ return copy.deepcopy(estimator) + klass = estimator.__class__ + new_object_params = estimator.get_params(deep=False) + for name, param in six.iteritems(new_object_params): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-81yn98os/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.8.2 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.13.3 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpeeq9ckew/tmp + creating /tmp/tmpeeq9ckew/tmp/tmpeeq9ckew + compile options: '-c' + gcc: /tmp/tmpeeq9ckew/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpeeq9ckew/tmp/tmpeeq9ckew/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpeeq9ckew/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/tests/test_base.py::test_clone +PASSED sklearn/tests/test_base.py::test_clone_2 +PASSED sklearn/tests/test_base.py::test_clone_buggy +PASSED sklearn/tests/test_base.py::test_clone_empty_array +PASSED sklearn/tests/test_base.py::test_clone_nan +PASSED sklearn/tests/test_base.py::test_clone_sparse_matrices +PASSED sklearn/tests/test_base.py::test_clone_estimator_types +PASSED sklearn/tests/test_base.py::test_repr +PASSED sklearn/tests/test_base.py::test_str +PASSED sklearn/tests/test_base.py::test_get_params +PASSED sklearn/tests/test_base.py::test_is_classifier +PASSED sklearn/tests/test_base.py::test_set_params +PASSED sklearn/tests/test_base.py::test_set_params_passes_all_parameters +PASSED sklearn/tests/test_base.py::test_set_params_updates_valid_params +PASSED sklearn/tests/test_base.py::test_score_sample_weight +PASSED sklearn/tests/test_base.py::test_clone_pandas_dataframe +PASSED sklearn/tests/test_base.py::test_pickle_version_warning_is_not_raised_with_matching_version +PASSED sklearn/tests/test_base.py::test_pickle_version_warning_is_issued_upon_different_version +PASSED sklearn/tests/test_base.py::test_pickle_version_warning_is_issued_when_no_version_info_in_pickle +PASSED sklearn/tests/test_base.py::test_pickle_version_no_warning_is_issued_with_non_sklearn_estimator +PASSED sklearn/tests/test_base.py::test_pickling_when_getstate_is_overwritten_by_mixin +PASSED sklearn/tests/test_base.py::test_pickling_when_getstate_is_overwritten_by_mixin_outside_of_sklearn +PASSED sklearn/tests/test_base.py::test_pickling_works_when_getstate_is_overwritten_in_the_child_class +======================== 23 passed, 1 warning in 0.40s ========================= ++ : '>>>>> End Test Output' ++ git checkout bfc4a566423e036fbdc9fb02765fd893e4860c85 sklearn/tests/test_base.py +Updated 1 path from cd8e75ade diff --git a/verify_logs/scikit-learn__scikit-learn-12682_log.txt b/verify_logs/scikit-learn__scikit-learn-12682_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..571253bd472f47c595b66a3c34694883d2e611ea --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-12682_log.txt @@ -0,0 +1,722 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/decomposition/dict_learning.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit e8ae2d7e06a562ea2569fb6085e08fd7f039a2e4 +Author: SWE-bench +Date: Wed Sep 10 15:22:56 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff d360ffa7c5896a91ae498b3fb9cf464464ce8f34 +diff --git a/sklearn/decomposition/dict_learning.py b/sklearn/decomposition/dict_learning.py +index a318c957f..c422b43fc 100644 +--- a/sklearn/decomposition/dict_learning.py ++++ b/sklearn/decomposition/dict_learning.py +@@ -865,7 +865,8 @@ class SparseCodingMixin(TransformerMixin): + transform_algorithm='omp', + transform_n_nonzero_coefs=None, + transform_alpha=None, split_sign=False, +- n_jobs=None, positive_code=False): ++ n_jobs=None, positive_code=False, ++ transform_max_iter=1000): + self.n_components = n_components + self.transform_algorithm = transform_algorithm + self.transform_n_nonzero_coefs = transform_n_nonzero_coefs +@@ -873,6 +874,7 @@ class SparseCodingMixin(TransformerMixin): + self.split_sign = split_sign + self.n_jobs = n_jobs + self.positive_code = positive_code ++ self.transform_max_iter = transform_max_iter + + def transform(self, X): + """Encode the data as a sparse combination of the dictionary atoms. +@@ -900,7 +902,7 @@ class SparseCodingMixin(TransformerMixin): + X, self.components_, algorithm=self.transform_algorithm, + n_nonzero_coefs=self.transform_n_nonzero_coefs, + alpha=self.transform_alpha, n_jobs=self.n_jobs, +- positive=self.positive_code) ++ positive=self.positive_code, max_iter=self.transform_max_iter) + + if self.split_sign: + # feature vector is split into a positive and negative side +@@ -969,6 +971,9 @@ class SparseCoder(BaseEstimator, SparseCodingMixin): + ``-1`` means using all processors. See :term:`Glossary ` + for more details. + ++ transform_max_iter : int, 1000 by default ++ Maximum number of iterations to perform if `transform_algorithm='lasso_cd'`. ++ + positive_code : bool + Whether to enforce positivity when finding the code. + +@@ -991,12 +996,13 @@ class SparseCoder(BaseEstimator, SparseCodingMixin): + + def __init__(self, dictionary, transform_algorithm='omp', + transform_n_nonzero_coefs=None, transform_alpha=None, +- split_sign=False, n_jobs=None, positive_code=False): ++ split_sign=False, n_jobs=None, positive_code=False, ++ transform_max_iter=1000): + self._set_sparse_coding_params(dictionary.shape[0], + transform_algorithm, + transform_n_nonzero_coefs, + transform_alpha, split_sign, n_jobs, +- positive_code) ++ positive_code, transform_max_iter) + self.components_ = dictionary + + def fit(self, X, y=None): +@@ -1122,6 +1128,9 @@ class DictionaryLearning(BaseEstimator, SparseCodingMixin): + + .. versionadded:: 0.20 + ++ transform_max_iter : int, 1000 by default ++ Maximum number of iterations to perform if `transform_algorithm='lasso_cd'`. ++ + Attributes + ---------- + components_ : array, [n_components, n_features] +@@ -1152,12 +1161,13 @@ class DictionaryLearning(BaseEstimator, SparseCodingMixin): + transform_n_nonzero_coefs=None, transform_alpha=None, + n_jobs=None, code_init=None, dict_init=None, verbose=False, + split_sign=False, random_state=None, +- positive_code=False, positive_dict=False): ++ positive_code=False, positive_dict=False, ++ transform_max_iter=1000): + + self._set_sparse_coding_params(n_components, transform_algorithm, + transform_n_nonzero_coefs, + transform_alpha, split_sign, n_jobs, +- positive_code) ++ positive_code, transform_max_iter) + self.alpha = alpha + self.max_iter = max_iter + self.tol = tol +@@ -1167,6 +1177,7 @@ class DictionaryLearning(BaseEstimator, SparseCodingMixin): + self.verbose = verbose + self.random_state = random_state + self.positive_dict = positive_dict ++ self.transform_max_iter = transform_max_iter + + def fit(self, X, y=None): + """Fit the model from data in X. +@@ -1305,6 +1316,9 @@ class MiniBatchDictionaryLearning(BaseEstimator, SparseCodingMixin): + + .. versionadded:: 0.20 + ++ transform_max_iter : int, 1000 by default ++ Maximum number of iterations to perform if `transform_algorithm='lasso_cd'`. ++ + Attributes + ---------- + components_ : array, [n_components, n_features] +@@ -1341,12 +1355,13 @@ class MiniBatchDictionaryLearning(BaseEstimator, SparseCodingMixin): + shuffle=True, dict_init=None, transform_algorithm='omp', + transform_n_nonzero_coefs=None, transform_alpha=None, + verbose=False, split_sign=False, random_state=None, +- positive_code=False, positive_dict=False): ++ positive_code=False, positive_dict=False, ++ transform_max_iter=1000): + + self._set_sparse_coding_params(n_components, transform_algorithm, + transform_n_nonzero_coefs, + transform_alpha, split_sign, n_jobs, +- positive_code) ++ positive_code, transform_max_iter) + self.alpha = alpha + self.n_iter = n_iter + self.fit_algorithm = fit_algorithm +@@ -1357,6 +1372,7 @@ class MiniBatchDictionaryLearning(BaseEstimator, SparseCodingMixin): + self.split_sign = split_sign + self.random_state = random_state + self.positive_dict = positive_dict ++ self.transform_max_iter = transform_max_iter + + def fit(self, X, y=None): + """Fit the model from data in X. ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-4hrdefep/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpmptmf4qe/tmp + creating /tmp/tmpmptmf4qe/tmp/tmpmptmf4qe + compile options: '-c' + gcc: /tmp/tmpmptmf4qe/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpmptmf4qe/tmp/tmpmptmf4qe/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpmptmf4qe/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 32%] +............................................. [100%] + +==================================== PASSES ==================================== +_______________________ test_sparse_coder_parallel_mmap ________________________ +----------------------------- Captured stderr call ----------------------------- +/testbed/sklearn/linear_model/coordinate_descent.py:471: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 0.0010663035091693634, tolerance: 0.00032172415994741156 + tol, rng, random, positive) +/testbed/sklearn/linear_model/coordinate_descent.py:471: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 0.0017665644216255342, tolerance: 0.0011344886235220746 + tol, rng, random, positive) +/testbed/sklearn/linear_model/coordinate_descent.py:471: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 0.0015386782886265223, tolerance: 0.0011979540114794543 + tol, rng, random, positive) +/testbed/sklearn/linear_model/coordinate_descent.py:471: ConvergenceWarning: Objective did not converge. You might want to increase the number of iterations. Duality gap: 0.0026450823191233493, tolerance: 0.001245843877618889 + tol, rng, random, positive) +=========================== short test summary info ============================ +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_shapes_omp +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_shapes +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_overcomplete +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_max_iter +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_lars_positive_parameter +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-False-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-False-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-False-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-True-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-True-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[False-True-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-False-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-False-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-False-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-True-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-True-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_positivity[True-True-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_lars_dict_positivity[False] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_lars_dict_positivity[True] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_lars_code_positivity +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_reconstruction +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_reconstruction_parallel +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_lassocd_readonly_data +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_nonzero_coefs +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_unknown_fit_algorithm +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_split +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_shapes +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_lars_positive_parameter +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-False-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-False-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-False-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-True-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-True-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[False-True-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-False-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-False-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-False-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-True-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-True-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_positivity[True-True-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_lars[False] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_minibatch_dictionary_learning_lars[True] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_positivity[False-False] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_positivity[False-True] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_positivity[True-False] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_positivity[True-True] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_verbosity +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_estimator_shapes +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_overcomplete +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_initialization +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_readonly_initialization +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_dict_learning_online_partial_fit +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_shapes +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[False-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[False-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[False-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[True-lasso_lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[True-lasso_cd] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_positivity[True-threshold] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_unavailable_positivity[lars] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_unavailable_positivity[omp] +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_input +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_error +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_encode_error_default_sparsity +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_unknown_method +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_coder_estimator +PASSED sklearn/decomposition/tests/test_dict_learning.py::test_sparse_coder_parallel_mmap +======================== 67 passed, 1 warning in 8.75s ========================= ++ : '>>>>> End Test Output' ++ git checkout d360ffa7c5896a91ae498b3fb9cf464464ce8f34 sklearn/decomposition/tests/test_dict_learning.py +Updated 1 path from 5e31a6fca diff --git a/verify_logs/scikit-learn__scikit-learn-12973_log.txt b/verify_logs/scikit-learn__scikit-learn-12973_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6809012b8f0e7b545efc300b1b636200d297113c --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-12973_log.txt @@ -0,0 +1,632 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/linear_model/least_angle.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 6f74d269c541a604a44805905a0b4a9b04f5d8c4 +Author: SWE-bench +Date: Wed Sep 10 15:21:23 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff a7b8b9e9e16d4e15fabda5ae615086c2e1c47d8a +diff --git a/sklearn/linear_model/least_angle.py b/sklearn/linear_model/least_angle.py +index 03b34a0dc..684d639c7 100644 +--- a/sklearn/linear_model/least_angle.py ++++ b/sklearn/linear_model/least_angle.py +@@ -529,7 +529,6 @@ class Lars(LinearModel, RegressorMixin): + + copy_X : boolean, optional, default True + If ``True``, X will be copied; else, it may be overwritten. +- + fit_path : boolean + If True the full path is stored in the ``coef_path_`` attribute. + If you compute the solution for a large problem or many targets, +@@ -759,7 +758,7 @@ class LassoLars(Lars): + the tolerance of the optimization. + + copy_X : boolean, optional, default True +- If True, X will be copied; else, it may be overwritten. ++ If ``True``, X will be copied; else, it may be overwritten. + + fit_path : boolean + If ``True`` the full path is stored in the ``coef_path_`` attribute. +@@ -1256,7 +1255,7 @@ class LassoLarsCV(LarsCV): + systems. + + copy_X : boolean, optional, default True +- If True, X will be copied; else, it may be overwritten. ++ If ``True``, X will be copied; else, it may be overwritten. + + positive : boolean (default=False) + Restrict coefficients to be >= 0. Be aware that you might want to +@@ -1401,7 +1400,7 @@ class LassoLarsIC(LassoLars): + the tolerance of the optimization. + + copy_X : boolean, optional, default True +- If True, X will be copied; else, it may be overwritten. ++ If ``True``, X will be copied; else, it may be overwritten. + + positive : boolean (default=False) + Restrict coefficients to be >= 0. Be aware that you might want to +@@ -1479,7 +1478,7 @@ class LassoLarsIC(LassoLars): + self.eps = eps + self.fit_path = True + +- def fit(self, X, y, copy_X=True): ++ def fit(self, X, y, copy_X=None): + """Fit the model using X, y as training data. + + Parameters +@@ -1490,7 +1489,8 @@ class LassoLarsIC(LassoLars): + y : array-like, shape (n_samples,) + target values. Will be cast to X's dtype if necessary + +- copy_X : boolean, optional, default True ++ copy_X : boolean, optional, default None ++ If ``None``, then ``self.copy_X`` is used. + If ``True``, X will be copied; else, it may be overwritten. + + Returns +@@ -1499,6 +1499,8 @@ class LassoLarsIC(LassoLars): + returns an instance of self. + """ + X, y = check_X_y(X, y, y_numeric=True) ++ if copy_X is None: ++ copy_X = self.copy_X + + X, y, Xmean, ymean, Xstd = LinearModel._preprocess_data( + X, y, self.fit_intercept, self.normalize, self.copy_X) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-3uinn6gr/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp8wsf_fyl/tmp + creating /tmp/tmp8wsf_fyl/tmp/tmp8wsf_fyl + compile options: '-c' + gcc: /tmp/tmp8wsf_fyl/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp8wsf_fyl/tmp/tmp8wsf_fyl/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp8wsf_fyl/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[ 73%] +........F [100%] + +=================================== FAILURES =================================== +__________________ test_lasso_lars_fit_copyX_behaviour[False] __________________ + +copy_X = False + + @pytest.mark.parametrize('copy_X', [True, False]) + def test_lasso_lars_fit_copyX_behaviour(copy_X): + """ + Test that user input to .fit for copy_X overrides default __init__ value + + """ + lasso_lars = LassoLarsIC(precompute=False) + rng = np.random.RandomState(0) + X = rng.normal(0, 1, (100, 5)) + X_copy = X.copy() + y = X[:, 2] + lasso_lars.fit(X, y, copy_X=copy_X) +> assert copy_X == np.array_equal(X, X_copy) +E assert False == True +E + where True = (array([[ 1.76405235, 0.40015721, 0.97873798, 2.2408932 , 1.86755799],\n [-0.97727788, 0.95008842, -0.1513572...336, 1.10028434, 1.29802197, 2.69622405],\n [-0.07392467, -0.65855297, -0.51423397, -1.01804188, -0.07785476]]), array([[ 1.76405235, 0.40015721, 0.97873798, 2.2408932 , 1.86755799],\n [-0.97727788, 0.95008842, -0.1513572...336, 1.10028434, 1.29802197, 2.69622405],\n [-0.07392467, -0.65855297, -0.51423397, -1.01804188, -0.07785476]])) +E + where = np.array_equal + +sklearn/linear_model/tests/test_least_angle.py:719: AssertionError +==================================== PASSES ==================================== +_________________________ test_no_path_all_precomputed _________________________ +----------------------------- Captured stdout call ----------------------------- +--- +=========================== short test summary info ============================ +PASSED sklearn/linear_model/tests/test_least_angle.py::test_simple +PASSED sklearn/linear_model/tests/test_least_angle.py::test_simple_precomputed +PASSED sklearn/linear_model/tests/test_least_angle.py::test_all_precomputed +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_lstsq +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_gives_lstsq_solution +PASSED sklearn/linear_model/tests/test_least_angle.py::test_collinearity +PASSED sklearn/linear_model/tests/test_least_angle.py::test_no_path +PASSED sklearn/linear_model/tests/test_least_angle.py::test_no_path_precomputed +PASSED sklearn/linear_model/tests/test_least_angle.py::test_no_path_all_precomputed +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_precompute[Lars] +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_precompute[LarsCV] +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_precompute[LassoLarsIC] +PASSED sklearn/linear_model/tests/test_least_angle.py::test_singular_matrix +PASSED sklearn/linear_model/tests/test_least_angle.py::test_rank_deficient_design +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_lasso_cd +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_lasso_cd_early_stopping +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_path_length +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_lasso_cd_ill_conditioned +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_lasso_cd_ill_conditioned2 +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_add_features +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_n_nonzero_coefs +PASSED sklearn/linear_model/tests/test_least_angle.py::test_multitarget +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_cv +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_cv_max_iter +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_ic +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_path_readonly_data +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lars_path_positive_constraint +PASSED sklearn/linear_model/tests/test_least_angle.py::test_estimatorclasses_positive_constraint +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_lasso_cd_positive +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_vs_R_implementation +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_copyX_behaviour[True] +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_copyX_behaviour[False] +PASSED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_fit_copyX_behaviour[True] +FAILED sklearn/linear_model/tests/test_least_angle.py::test_lasso_lars_fit_copyX_behaviour[False] +=================== 1 failed, 33 passed, 4 warnings in 0.68s =================== ++ : '>>>>> End Test Output' ++ git checkout a7b8b9e9e16d4e15fabda5ae615086c2e1c47d8a sklearn/linear_model/tests/test_least_angle.py +Updated 1 path from 2ef086310 diff --git a/verify_logs/scikit-learn__scikit-learn-13124_log.txt b/verify_logs/scikit-learn__scikit-learn-13124_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..1d571972106096b48786d8c60ffd00183b865a2d --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13124_log.txt @@ -0,0 +1,617 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/model_selection/_split.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 1a6f6462713e4c2a689aa75c6277ee2608f5182c +Author: SWE-bench +Date: Wed Sep 10 15:26:59 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 9f0b959a8c9195d1b6e203f08b698e052b426ca9 +diff --git a/sklearn/model_selection/_split.py b/sklearn/model_selection/_split.py +index 24394f869..f273bc1ea 100644 +--- a/sklearn/model_selection/_split.py ++++ b/sklearn/model_selection/_split.py +@@ -620,7 +620,7 @@ class StratifiedKFold(_BaseKFold): + super().__init__(n_splits, shuffle, random_state) + + def _make_test_folds(self, X, y=None): +- rng = self.random_state ++ rng = check_random_state(self.random_state) + y = np.asarray(y) + type_of_target_y = type_of_target(y) + allowed_target_types = ('binary', 'multiclass') +@@ -653,7 +653,7 @@ class StratifiedKFold(_BaseKFold): + # So we pass np.zeroes(max(c, n_splits)) as data to the KFold + per_cls_cvs = [ + KFold(self.n_splits, shuffle=self.shuffle, +- random_state=rng).split(np.zeros(max(count, self.n_splits))) ++ random_state=rng.randint(0, 2**32)).split(np.zeros(max(count, self.n_splits))) + for count in y_counts] + + test_folds = np.zeros(n_samples, dtype=np.int) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-eh8rsge2/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp5ei_e_kw/tmp + creating /tmp/tmp5ei_e_kw/tmp/tmp5ei_e_kw + compile options: '-c' + gcc: /tmp/tmp5ei_e_kw/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp5ei_e_kw/tmp/tmp5ei_e_kw/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp5ei_e_kw/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[ 45%] +..F.............................. [100%] + +=================================== FAILURES =================================== +______________ test_repeated_stratified_kfold_determinstic_split _______________ + + def test_repeated_stratified_kfold_determinstic_split(): + X = [[1, 2], [3, 4], [5, 6], [7, 8], [9, 10]] + y = [1, 1, 1, 0, 0] + random_state = 1944695409 + rskf = RepeatedStratifiedKFold( + n_splits=2, + n_repeats=2, + random_state=random_state) + + # split should produce same and deterministic splits on + # each call + for _ in range(3): + splits = rskf.split(X, y) + train, test = next(splits) +> assert_array_equal(train, [1, 4]) +E AssertionError: +E Arrays are not equal +E +E Mismatched elements: 2 / 2 (100%) +E Max absolute difference: 1 +E Max relative difference: 1. +E x: array([0, 3]) +E y: array([1, 4]) + +sklearn/model_selection/tests/test_split.py:988: AssertionError +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/model_selection/tests/test_split.py::test_cross_validator_with_default_params +PASSED sklearn/model_selection/tests/test_split.py::test_2d_y +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_valueerrors +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_indices +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_no_shuffle +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_no_shuffle +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_balance +PASSED sklearn/model_selection/tests/test_split.py::test_stratifiedkfold_balance +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_kfold_stratifiedkfold_reproducibility +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_stratifiedkfold +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_can_detect_dependent_samples_on_digits +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_init +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_respects_test_size +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_iter +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_even +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_overlap_train_test_bug +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_multilabel +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_multilabel_many_labels +PASSED sklearn/model_selection/tests/test_split.py::test_predefinedsplit_with_kfold_split +PASSED sklearn/model_selection/tests/test_split.py::test_group_shuffle_split +PASSED sklearn/model_selection/tests/test_split.py::test_leave_one_p_group_out +PASSED sklearn/model_selection/tests/test_split.py::test_leave_group_out_changing_groups +PASSED sklearn/model_selection/tests/test_split.py::test_leave_one_p_group_out_error_on_fewer_number_of_groups +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_cv_value_errors +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_kfold_determinstic_split +PASSED sklearn/model_selection/tests/test_split.py::test_get_n_splits_for_repeated_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_get_n_splits_for_repeated_stratified_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_errors +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[1.2-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[1.0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[-0.2-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-1.2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-1.0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-0.0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8--0.2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[-10-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[11-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8--10] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8-0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8-11] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_reproducible +PASSED sklearn/model_selection/tests/test_split.py::test_stratifiedshufflesplit_list_input +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_allow_nans +PASSED sklearn/model_selection/tests/test_split.py::test_check_cv +PASSED sklearn/model_selection/tests/test_split.py::test_cv_iterable_wrapper +PASSED sklearn/model_selection/tests/test_split.py::test_group_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_time_series_cv +PASSED sklearn/model_selection/tests/test_split.py::test_time_series_max_train_size +PASSED sklearn/model_selection/tests/test_split.py::test_nested_cv +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_default_warning +PASSED sklearn/model_selection/tests/test_split.py::test_nsplit_default_warn +PASSED sklearn/model_selection/tests/test_split.py::test_check_cv_default_warn +PASSED sklearn/model_selection/tests/test_split.py::test_build_repr +FAILED sklearn/model_selection/tests/test_split.py::test_repeated_stratified_kfold_determinstic_split +================== 1 failed, 60 passed, 674 warnings in 1.25s ================== ++ : '>>>>> End Test Output' ++ git checkout 9f0b959a8c9195d1b6e203f08b698e052b426ca9 sklearn/model_selection/tests/test_split.py +Updated 1 path from 72e1da048 diff --git a/verify_logs/scikit-learn__scikit-learn-13135_log.txt b/verify_logs/scikit-learn__scikit-learn-13135_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..9e71bb7c42ecd6b56cff31207fca3334712e374b --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13135_log.txt @@ -0,0 +1,553 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/preprocessing/_discretization.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 5a92743b10a7bb1558564451981f7cfd01105a3b +Author: SWE-bench +Date: Wed Sep 10 15:26:56 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff a061ada48efccf0845acae17009553e01764452b +diff --git a/sklearn/preprocessing/_discretization.py b/sklearn/preprocessing/_discretization.py +index dd969c12b..bda198a75 100644 +--- a/sklearn/preprocessing/_discretization.py ++++ b/sklearn/preprocessing/_discretization.py +@@ -172,6 +172,8 @@ class KBinsDiscretizer(BaseEstimator, TransformerMixin): + # 1D k-means procedure + km = KMeans(n_clusters=n_bins[jj], init=init, n_init=1) + centers = km.fit(column[:, None]).cluster_centers_[:, 0] ++ # Sort centers so bin edges are monotonically increasing ++ centers = np.sort(centers) + bin_edges[jj] = (centers[1:] + centers[:-1]) * 0.5 + bin_edges[jj] = np.r_[col_min, bin_edges[jj], col_max] + ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-7gqwzwgv/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpw7sngvfd/tmp + creating /tmp/tmpw7sngvfd/tmp/tmpw7sngvfd + compile options: '-c' + gcc: /tmp/tmpw7sngvfd/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpw7sngvfd/tmp/tmpw7sngvfd/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpw7sngvfd/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 61%] +............. [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform[uniform-expected0] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform[kmeans-expected1] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform[quantile-expected2] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_valid_n_bins +PASSED sklearn/preprocessing/tests/test_discretization.py::test_invalid_n_bins +PASSED sklearn/preprocessing/tests/test_discretization.py::test_invalid_n_bins_array +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform_n_bins_array[uniform-expected0] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform_n_bins_array[kmeans-expected1] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_fit_transform_n_bins_array[quantile-expected2] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_invalid_n_features +PASSED sklearn/preprocessing/tests/test_discretization.py::test_same_min_max[uniform] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_same_min_max[kmeans] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_same_min_max[quantile] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_transform_1d_behavior +PASSED sklearn/preprocessing/tests/test_discretization.py::test_numeric_stability +PASSED sklearn/preprocessing/tests/test_discretization.py::test_invalid_encode_option +PASSED sklearn/preprocessing/tests/test_discretization.py::test_encode_options +PASSED sklearn/preprocessing/tests/test_discretization.py::test_invalid_strategy_option +PASSED sklearn/preprocessing/tests/test_discretization.py::test_nonuniform_strategies[uniform-expected_2bins0-expected_3bins0-expected_5bins0] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_nonuniform_strategies[kmeans-expected_2bins1-expected_3bins1-expected_5bins1] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_nonuniform_strategies[quantile-expected_2bins2-expected_3bins2-expected_5bins2] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[ordinal-uniform] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[ordinal-kmeans] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[ordinal-quantile] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-uniform] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-kmeans] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-quantile] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-dense-uniform] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-dense-kmeans] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_inverse_transform[onehot-dense-quantile] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_transform_outside_fit_range[uniform] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_transform_outside_fit_range[kmeans] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_transform_outside_fit_range[quantile] +PASSED sklearn/preprocessing/tests/test_discretization.py::test_overwrite +============================== 34 passed in 0.53s ============================== ++ : '>>>>> End Test Output' ++ git checkout a061ada48efccf0845acae17009553e01764452b sklearn/preprocessing/tests/test_discretization.py +Updated 1 path from 3d54b70bd diff --git a/verify_logs/scikit-learn__scikit-learn-13142_log.txt b/verify_logs/scikit-learn__scikit-learn-13142_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..583abd2acd3372388b336a8e466e2996ef94d817 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13142_log.txt @@ -0,0 +1,593 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/mixture/base.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit a8bcce47501d2f2f3cbd929c05d8ef1f8bce14e2 +Author: SWE-bench +Date: Wed Sep 10 15:28:07 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 1c8668b0a021832386470ddf740d834e02c66f69 +diff --git a/sklearn/mixture/base.py b/sklearn/mixture/base.py +index bd34333c0..8920bef18 100644 +--- a/sklearn/mixture/base.py ++++ b/sklearn/mixture/base.py +@@ -257,11 +257,6 @@ class BaseMixture(DensityMixin, BaseEstimator, metaclass=ABCMeta): + best_params = self._get_parameters() + best_n_iter = n_iter + +- # Always do a final e-step to guarantee that the labels returned by +- # fit_predict(X) are always consistent with fit(X).predict(X) +- # for any value of max_iter and tol (and any random_state). +- _, log_resp = self._e_step(X) +- + if not self.converged_: + warnings.warn('Initialization %d did not converge. ' + 'Try different init parameters, ' +@@ -273,6 +268,11 @@ class BaseMixture(DensityMixin, BaseEstimator, metaclass=ABCMeta): + self.n_iter_ = best_n_iter + self.lower_bound_ = max_lower_bound + ++ # Always do a final e-step to guarantee that the labels returned by ++ # fit_predict(X) are always consistent with fit(X).predict(X) ++ # for any value of max_iter and tol (and any random_state). ++ _, log_resp = self._e_step(X) ++ + return log_resp.argmax(axis=1) + + def _e_step(self, X): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-fqhngx7w/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpoinsam09/tmp + creating /tmp/tmpoinsam09/tmp/tmpoinsam09 + compile options: '-c' + gcc: /tmp/tmpoinsam09/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpoinsam09/tmp/tmpoinsam09/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpoinsam09/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn._isotonic" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'. + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz#sha256=f49cd134c61cf2fd75e0ce2676db03e4054504a5a4986d00f8299ae632dc4605 (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout 1c8668b0a021832386470ddf740d834e02c66f69 sklearn/mixture/tests/test_bayesian_mixture.py sklearn/mixture/tests/test_gaussian_mixture.py +Updated 0 paths from 96511ff23 ++ git apply -v - +Checking patch sklearn/mixture/tests/test_bayesian_mixture.py... +Checking patch sklearn/mixture/tests/test_gaussian_mixture.py... +Applied patch sklearn/mixture/tests/test_bayesian_mixture.py cleanly. +Applied patch sklearn/mixture/tests/test_gaussian_mixture.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/mixture/tests/test_bayesian_mixture.py sklearn/mixture/tests/test_gaussian_mixture.py +============================= test session starts ============================== +platform linux -- Python 3.6.13, pytest-6.2.4, py-1.11.0, pluggy-0.13.1 +rootdir: /testbed, configfile: setup.cfg +collected 56 items + +sklearn/mixture/tests/test_bayesian_mixture.py ................... [ 33%] +sklearn/mixture/tests/test_gaussian_mixture.py ......................... [ 78%] +............ [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_log_dirichlet_norm +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_log_wishart_norm +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_covariance_type +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_weight_concentration_prior_type +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_weights_prior_initialisation +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_mean_prior_initialisation +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_precisions_prior_initialisation +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_check_is_fitted +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_weights +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_monotonic_likelihood +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_compare_covar_type +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_check_covariance_precision +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_invariant_translation +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_fit_predict[0-2-1e-07] +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_fit_predict[1-2-0.1] +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_fit_predict[3-300-1e-07] +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_fit_predict[4-300-0.1] +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_fit_predict_n_init +PASSED sklearn/mixture/tests/test_bayesian_mixture.py::test_bayesian_mixture_predict_predict_proba +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_attributes +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_check_X +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_check_weights +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_check_means +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_check_precisions +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_suffstat_sk_full +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_suffstat_sk_tied +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_suffstat_sk_diag +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_suffstat_sk_spherical +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_compute_log_det_cholesky +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_log_probabilities +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_estimate_log_prob_resp +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_predict_predict_proba +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_predict[0-2-1e-07] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_predict[1-2-0.1] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_predict[3-300-1e-07] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_predict[4-300-0.1] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_predict_n_init +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_best_params +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_fit_convergence_warning +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_multiple_init +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_n_parameters +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_bic_1d_1component +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_aic_bic +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_gaussian_mixture_verbose +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_warm_start[0] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_warm_start[1] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_warm_start[2] +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_convergence_detected_with_warm_start +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_score +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_score_samples +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_monotonic_likelihood +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_regularisation +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_property +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_sample +PASSED sklearn/mixture/tests/test_gaussian_mixture.py::test_init +======================== 56 passed, 9 warnings in 5.29s ======================== ++ : '>>>>> End Test Output' ++ git checkout 1c8668b0a021832386470ddf740d834e02c66f69 sklearn/mixture/tests/test_bayesian_mixture.py sklearn/mixture/tests/test_gaussian_mixture.py +Updated 2 paths from 96511ff23 diff --git a/verify_logs/scikit-learn__scikit-learn-13328_log.txt b/verify_logs/scikit-learn__scikit-learn-13328_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..4f7a953fdd08dd266a6fdcdc3bf743c84854822e --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13328_log.txt @@ -0,0 +1,535 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/linear_model/huber.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 06bc86b3b01b03664bda1b6478154200368a8aee +Author: SWE-bench +Date: Wed Sep 10 15:30:35 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 37b0e66c871e8fb032a9c7086b2a1d5419838154 +diff --git a/sklearn/linear_model/huber.py b/sklearn/linear_model/huber.py +index 65c686400..167666082 100644 +--- a/sklearn/linear_model/huber.py ++++ b/sklearn/linear_model/huber.py +@@ -8,6 +8,7 @@ from scipy import optimize + from ..base import BaseEstimator, RegressorMixin + from .base import LinearModel + from ..utils import check_X_y ++from ..utils.validation import FLOAT_DTYPES + from ..utils import check_consistent_length + from ..utils import axis0_safe_slice + from ..utils.extmath import safe_sparse_dot +@@ -251,7 +252,7 @@ class HuberRegressor(LinearModel, RegressorMixin, BaseEstimator): + self : object + """ + X, y = check_X_y( +- X, y, copy=False, accept_sparse=['csr'], y_numeric=True) ++ X, y, dtype=FLOAT_DTYPES, copy=False, accept_sparse=['csr'], y_numeric=True) + if sample_weight is not None: + sample_weight = np.array(sample_weight) + check_consistent_length(y, sample_weight) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-_rvuisif/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp814p1rct/tmp + creating /tmp/tmp814p1rct/tmp/tmp814p1rct + compile options: '-c' + gcc: /tmp/tmp814p1rct/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp814p1rct/tmp/tmp814p1rct/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp814p1rct/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz#sha256=f49cd134c61cf2fd75e0ce2676db03e4054504a5a4986d00f8299ae632dc4605 (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout 37b0e66c871e8fb032a9c7086b2a1d5419838154 sklearn/linear_model/tests/test_huber.py +Updated 0 paths from db78dd3cf ++ git apply -v - +Checking patch sklearn/linear_model/tests/test_huber.py... +Applied patch sklearn/linear_model/tests/test_huber.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/linear_model/tests/test_huber.py +============================= test session starts ============================== +platform linux -- Python 3.6.13, pytest-6.2.4, py-1.11.0, pluggy-0.13.1 +rootdir: /testbed, configfile: setup.cfg +collected 10 items + +sklearn/linear_model/tests/test_huber.py .......... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_equals_lr_for_high_epsilon +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_max_iter +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_gradient +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_sample_weights +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_sparse +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_scaling_invariant +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_and_sgd_same_results +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_warm_start +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_better_r2_score +PASSED sklearn/linear_model/tests/test_huber.py::test_huber_bool +============================== 10 passed in 0.54s ============================== ++ : '>>>>> End Test Output' ++ git checkout 37b0e66c871e8fb032a9c7086b2a1d5419838154 sklearn/linear_model/tests/test_huber.py +Updated 1 path from db78dd3cf diff --git a/verify_logs/scikit-learn__scikit-learn-13439_log.txt b/verify_logs/scikit-learn__scikit-learn-13439_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..afd5f3eae68d809d218355f07eef478e5db7302e --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13439_log.txt @@ -0,0 +1,573 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/pipeline.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 0ef41b20034ba45fc7d10b52f3186184d1b3a057 +Author: SWE-bench +Date: Wed Sep 10 15:30:43 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff a62775e99f2a5ea3d51db7160fad783f6cd8a4c5 +diff --git a/sklearn/pipeline.py b/sklearn/pipeline.py +index 7eaf9a46f..b840fb4b6 100644 +--- a/sklearn/pipeline.py ++++ b/sklearn/pipeline.py +@@ -219,6 +219,11 @@ class Pipeline(_BaseComposition): + return self.named_steps[ind] + return est + ++ ++ def __len__(self): ++ """Return the number of steps in the pipeline.""" ++ return len(self.steps) ++ + @property + def _estimator_type(self): + return self.steps[-1][1]._estimator_type ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-e4ywtnd0/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp9g3taz_d/tmp + creating /tmp/tmp9g3taz_d/tmp/tmp9g3taz_d + compile options: '-c' + gcc: /tmp/tmp9g3taz_d/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp9g3taz_d/tmp/tmp9g3taz_d/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp9g3taz_d/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[100%] + +==================================== PASSES ==================================== +_____________________________ test_pipeline_memory _____________________________ +----------------------------- Captured stdout call ----------------------------- +________________________________________________________________________________ +[Memory] Calling sklearn.pipeline._fit_transform_one... +_fit_transform_one(, array([[5.1, ..., 0.2], + ..., + [5.9, ..., 1.8]]), array([0, ..., 2]), None) +________________________________________________fit_transform_one - 0.0s, 0.0min +[Memory]0.0s, 0.0min : Loading _fit_transform_one from /tmp/tmpuvtn7xfi/joblib/sklearn/pipeline/_fit_transform_one/f021198b76a1401a026f06f47f4d8142 +___________________________________fit_transform_one cache loaded - 0.0s, 0.0min +[Memory]0.0s, 0.0min : Loading _fit_transform_one from /tmp/tmpuvtn7xfi/joblib/sklearn/pipeline/_fit_transform_one/f021198b76a1401a026f06f47f4d8142 +___________________________________fit_transform_one cache loaded - 0.0s, 0.0min +=========================== short test summary info ============================ +PASSED sklearn/tests/test_pipeline.py::test_pipeline_init +PASSED sklearn/tests/test_pipeline.py::test_pipeline_init_tuple +PASSED sklearn/tests/test_pipeline.py::test_pipeline_methods_anova +PASSED sklearn/tests/test_pipeline.py::test_pipeline_fit_params +PASSED sklearn/tests/test_pipeline.py::test_pipeline_sample_weight_supported +PASSED sklearn/tests/test_pipeline.py::test_pipeline_sample_weight_unsupported +PASSED sklearn/tests/test_pipeline.py::test_pipeline_raise_set_params_error +PASSED sklearn/tests/test_pipeline.py::test_pipeline_methods_pca_svm +PASSED sklearn/tests/test_pipeline.py::test_pipeline_methods_preprocessing_svm +PASSED sklearn/tests/test_pipeline.py::test_fit_predict_on_pipeline +PASSED sklearn/tests/test_pipeline.py::test_fit_predict_on_pipeline_without_fit_predict +PASSED sklearn/tests/test_pipeline.py::test_fit_predict_with_intermediate_fit_params +PASSED sklearn/tests/test_pipeline.py::test_predict_with_predict_params +PASSED sklearn/tests/test_pipeline.py::test_feature_union +PASSED sklearn/tests/test_pipeline.py::test_make_union +PASSED sklearn/tests/test_pipeline.py::test_make_union_kwargs +PASSED sklearn/tests/test_pipeline.py::test_pipeline_transform +PASSED sklearn/tests/test_pipeline.py::test_pipeline_fit_transform +PASSED sklearn/tests/test_pipeline.py::test_pipeline_slice +PASSED sklearn/tests/test_pipeline.py::test_pipeline_index +PASSED sklearn/tests/test_pipeline.py::test_set_pipeline_steps +PASSED sklearn/tests/test_pipeline.py::test_pipeline_named_steps +PASSED sklearn/tests/test_pipeline.py::test_pipeline_correctly_adjusts_steps[None] +PASSED sklearn/tests/test_pipeline.py::test_pipeline_correctly_adjusts_steps[passthrough] +PASSED sklearn/tests/test_pipeline.py::test_set_pipeline_step_passthrough[None] +PASSED sklearn/tests/test_pipeline.py::test_set_pipeline_step_passthrough[passthrough] +PASSED sklearn/tests/test_pipeline.py::test_pipeline_ducktyping +PASSED sklearn/tests/test_pipeline.py::test_make_pipeline +PASSED sklearn/tests/test_pipeline.py::test_feature_union_weights +PASSED sklearn/tests/test_pipeline.py::test_feature_union_parallel +PASSED sklearn/tests/test_pipeline.py::test_feature_union_feature_names +PASSED sklearn/tests/test_pipeline.py::test_classes_property +PASSED sklearn/tests/test_pipeline.py::test_set_feature_union_steps +PASSED sklearn/tests/test_pipeline.py::test_set_feature_union_step_drop[drop] +PASSED sklearn/tests/test_pipeline.py::test_set_feature_union_step_drop[None] +PASSED sklearn/tests/test_pipeline.py::test_step_name_validation +PASSED sklearn/tests/test_pipeline.py::test_set_params_nested_pipeline +PASSED sklearn/tests/test_pipeline.py::test_pipeline_wrong_memory +PASSED sklearn/tests/test_pipeline.py::test_pipeline_with_cache_attribute +PASSED sklearn/tests/test_pipeline.py::test_pipeline_memory +PASSED sklearn/tests/test_pipeline.py::test_make_pipeline_memory +======================== 41 passed, 2 warnings in 1.91s ======================== ++ : '>>>>> End Test Output' ++ git checkout a62775e99f2a5ea3d51db7160fad783f6cd8a4c5 sklearn/tests/test_pipeline.py +Updated 1 path from 0b34bd89f diff --git a/verify_logs/scikit-learn__scikit-learn-13496_log.txt b/verify_logs/scikit-learn__scikit-learn-13496_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..bf31da900fa1107e3f2e5a615dff9d8e63e74bac --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13496_log.txt @@ -0,0 +1,560 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/ensemble/iforest.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit cddafd895f2a5e42e865f711d0c729cb6a66c7cf +Author: SWE-bench +Date: Wed Sep 10 15:32:24 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 3aefc834dce72e850bff48689bea3c7dff5f3fad +diff --git a/sklearn/ensemble/iforest.py b/sklearn/ensemble/iforest.py +index 8a1bd3625..f42c80532 100644 +--- a/sklearn/ensemble/iforest.py ++++ b/sklearn/ensemble/iforest.py +@@ -120,6 +120,11 @@ class IsolationForest(BaseBagging, OutlierMixin): + verbose : int, optional (default=0) + Controls the verbosity of the tree building process. + ++ warm_start : bool, optional (default=False) ++ When set to ``True``, reuse the solution of the previous call to fit ++ and add more estimators to the ensemble, otherwise, just fit a whole ++ new forest. See :term:`the Glossary `. ++ + + Attributes + ---------- +@@ -173,7 +178,8 @@ class IsolationForest(BaseBagging, OutlierMixin): + n_jobs=None, + behaviour='old', + random_state=None, +- verbose=0): ++ verbose=0, ++ warm_start=False): + super().__init__( + base_estimator=ExtraTreeRegressor( + max_features=1, +@@ -187,7 +193,8 @@ class IsolationForest(BaseBagging, OutlierMixin): + max_features=max_features, + n_jobs=n_jobs, + random_state=random_state, +- verbose=verbose) ++ verbose=verbose, ++ warm_start=warm_start) + + self.behaviour = behaviour + self.contamination = contamination ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-_qojvhr9/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.21.dev0) (1.5.2) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.21.dev0 + Uninstalling scikit-learn-0.21.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.21.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpialpioy7/tmp + creating /tmp/tmpialpioy7/tmp/tmpialpioy7 + compile options: '-c' + gcc: /tmp/tmpialpioy7/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpialpioy7/tmp/tmpialpioy7/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpialpioy7/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.21.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.21.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_sparse +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_error +PASSED sklearn/ensemble/tests/test_iforest.py::test_recalculate_max_depth +PASSED sklearn/ensemble/tests/test_iforest.py::test_max_samples_attribute +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_parallel_regression +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_performance +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_works[0.25] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_works[auto] +PASSED sklearn/ensemble/tests/test_iforest.py::test_max_samples_consistency +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_subsampled_features +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_average_path_length +PASSED sklearn/ensemble/tests/test_iforest.py::test_score_samples +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_warm_start +PASSED sklearn/ensemble/tests/test_iforest.py::test_deprecation +PASSED sklearn/ensemble/tests/test_iforest.py::test_behaviour_param +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works1[0.25-3] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works1[auto-2] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works2[0.25-3] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works2[auto-2] +============================== 20 passed in 2.26s ============================== ++ : '>>>>> End Test Output' ++ git checkout 3aefc834dce72e850bff48689bea3c7dff5f3fad sklearn/ensemble/tests/test_iforest.py +Updated 1 path from e85645a93 diff --git a/verify_logs/scikit-learn__scikit-learn-13779_log.txt b/verify_logs/scikit-learn__scikit-learn-13779_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..f4461d5d2bf63d2664ca5cfe6ea13382d208ee81 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-13779_log.txt @@ -0,0 +1,552 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/ensemble/voting.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 489fdee77a4f74f72a739360e76e6a92bafa7e4c +Author: SWE-bench +Date: Wed Sep 10 15:32:10 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff b34751b7ed02b2cfcc36037fb729d4360480a299 +diff --git a/sklearn/ensemble/voting.py b/sklearn/ensemble/voting.py +index 7afa7180c..d8e14b152 100644 +--- a/sklearn/ensemble/voting.py ++++ b/sklearn/ensemble/voting.py +@@ -78,6 +78,8 @@ class _BaseVoting(_BaseComposition, TransformerMixin): + + if sample_weight is not None: + for name, step in self.estimators: ++ if step is None: ++ continue + if not has_fit_parameter(step, 'sample_weight'): + raise ValueError('Underlying estimator \'%s\' does not' + ' support sample weights.' % name) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-uzzbeqlv/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpi0dw8vb5/tmp + creating /tmp/tmpi0dw8vb5/tmp/tmpi0dw8vb5 + compile options: '-c' + gcc: /tmp/tmpi0dw8vb5/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpi0dw8vb5/tmp/tmpi0dw8vb5/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpi0dw8vb5/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/63/71/5686e51f06fa59da55f7e81c3101844e57434a30f4a0d7456674d1459841/pip-22.0.1.tar.gz#sha256=7fd7a92f2fb1d2ac2ae8c72fb10b1e640560a0361ed4427453509e2bcc18605b (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/83/b5/df8640236faa5a3cb80bfafd68e9fb4b22578208b8398c032ccff803f9e0/pip-22.0.2-py3-none-any.whl#sha256=682eabc4716bfce606aca8dab488e9c7b58b0737e9001004eb858cdafcd8dbdd (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/d9/c1/146b24a7648fdf3f8b4dc6521ab0b26ac151ef903bac0b63a4e1450cb4d1/pip-22.0.2.tar.gz#sha256=27b4b70c34ec35f77947f777070d8331adbb1e444842e98e7150c288dc0caea4 (from https://pypi.org/simple/pip/) 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/ensemble/tests/test_voting.py::test_estimator_init +PASSED sklearn/ensemble/tests/test_voting.py::test_predictproba_hardvoting +PASSED sklearn/ensemble/tests/test_voting.py::test_notfitted +PASSED sklearn/ensemble/tests/test_voting.py::test_majority_label_iris +PASSED sklearn/ensemble/tests/test_voting.py::test_tie_situation +PASSED sklearn/ensemble/tests/test_voting.py::test_weights_iris +PASSED sklearn/ensemble/tests/test_voting.py::test_weights_regressor +PASSED sklearn/ensemble/tests/test_voting.py::test_predict_on_toy_problem +PASSED sklearn/ensemble/tests/test_voting.py::test_predict_proba_on_toy_problem +PASSED sklearn/ensemble/tests/test_voting.py::test_multilabel +PASSED sklearn/ensemble/tests/test_voting.py::test_gridsearch +PASSED sklearn/ensemble/tests/test_voting.py::test_parallel_fit +PASSED sklearn/ensemble/tests/test_voting.py::test_sample_weight +PASSED sklearn/ensemble/tests/test_voting.py::test_sample_weight_kwargs +PASSED sklearn/ensemble/tests/test_voting.py::test_set_params +PASSED sklearn/ensemble/tests/test_voting.py::test_set_estimator_none +PASSED sklearn/ensemble/tests/test_voting.py::test_estimator_weights_format +PASSED sklearn/ensemble/tests/test_voting.py::test_transform +PASSED sklearn/ensemble/tests/test_voting.py::test_none_estimator_with_weights[X0-y0-voter0] +PASSED sklearn/ensemble/tests/test_voting.py::test_none_estimator_with_weights[X1-y1-voter1] +======================== 20 passed, 1 warning in 1.25s ========================= ++ : '>>>>> End Test Output' ++ git checkout b34751b7ed02b2cfcc36037fb729d4360480a299 sklearn/ensemble/tests/test_voting.py +Updated 1 path from 7b9b2f347 diff --git a/verify_logs/scikit-learn__scikit-learn-14053_log.txt b/verify_logs/scikit-learn__scikit-learn-14053_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6ec9936a757bd97cce0715da05ff5641b699042f --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14053_log.txt @@ -0,0 +1,584 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/tree/export.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit ba3887d1529d3b1a0734d6bb13fea54e96060ccd +Author: SWE-bench +Date: Wed Sep 10 15:33:22 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 6ab8c86c383dd847a1be7103ad115f174fe23ffd +diff --git a/sklearn/tree/export.py b/sklearn/tree/export.py +index 1fe11e596..877cf0c7a 100644 +--- a/sklearn/tree/export.py ++++ b/sklearn/tree/export.py +@@ -890,9 +890,9 @@ def export_text(decision_tree, feature_names=None, max_depth=10, + value_fmt = "{}{} value: {}\n" + + if feature_names: +- feature_names_ = [feature_names[i] for i in tree_.feature] ++ feature_names_ = [feature_names[i] if i != _tree.TREE_UNDEFINED else "" for i in tree_.feature] + else: +- feature_names_ = ["feature_{}".format(i) for i in tree_.feature] ++ feature_names_ = ["feature_{}".format(i) if i != _tree.TREE_UNDEFINED else "" for i in tree_.feature] + + export_text.report = "" + ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-ihjphdjj/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmp9_wsbnme/tmp + creating /tmp/tmp9_wsbnme/tmp/tmp9_wsbnme + compile options: '-c' + gcc: /tmp/tmp9_wsbnme/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmp9_wsbnme/tmp/tmp9_wsbnme/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmp9_wsbnme/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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test_plot_tree_entropy ___________________ + + @pytest.fixture(scope='function') + def pyplot(): + """Setup and teardown fixture for matplotlib. + + This fixture checks if we can import matplotlib. If not, the tests will be + skipped. Otherwise, we setup matplotlib backend and close the figures + after running the functions. + + Returns + ------- + pyplot : module + The ``matplotlib.pyplot`` module. + """ + matplotlib = pytest.importorskip('matplotlib') +> matplotlib.use('agg', warn=False, force=True) +E TypeError: use() got an unexpected keyword argument 'warn' + +sklearn/conftest.py:18: TypeError +____________________ ERROR at setup of test_plot_tree_gini _____________________ + + @pytest.fixture(scope='function') + def pyplot(): + """Setup and teardown fixture for matplotlib. + + This fixture checks if we can import matplotlib. If not, the tests will be + skipped. Otherwise, we setup matplotlib backend and close the figures + after running the functions. + + Returns + ------- + pyplot : module + The ``matplotlib.pyplot`` module. + """ + matplotlib = pytest.importorskip('matplotlib') +> matplotlib.use('agg', warn=False, force=True) +E TypeError: use() got an unexpected keyword argument 'warn' + +sklearn/conftest.py:18: TypeError +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/tree/tests/test_export.py::test_graphviz_toy +PASSED sklearn/tree/tests/test_export.py::test_graphviz_errors +PASSED sklearn/tree/tests/test_export.py::test_friedman_mse_in_graphviz +PASSED sklearn/tree/tests/test_export.py::test_precision +PASSED sklearn/tree/tests/test_export.py::test_export_text_errors +PASSED sklearn/tree/tests/test_export.py::test_export_text +ERROR sklearn/tree/tests/test_export.py::test_plot_tree_entropy - TypeError: ... +ERROR sklearn/tree/tests/test_export.py::test_plot_tree_gini - TypeError: use... +==================== 6 passed, 1 warning, 2 errors in 0.57s ==================== ++ : '>>>>> End Test Output' ++ git checkout 6ab8c86c383dd847a1be7103ad115f174fe23ffd sklearn/tree/tests/test_export.py +Updated 1 path from c154d0ae8 diff --git a/verify_logs/scikit-learn__scikit-learn-14087_log.txt b/verify_logs/scikit-learn__scikit-learn-14087_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..52445065f284c76b9299514bc668dd525fc8f767 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14087_log.txt @@ -0,0 +1,749 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/linear_model/logistic.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit c51cc10f24be3cb51c47284169c6a67d0571a834 +Author: SWE-bench +Date: Wed Sep 10 15:37:08 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff a5743ed36fbd3fbc8e351bdab16561fbfca7dfa1 +diff --git a/sklearn/linear_model/logistic.py b/sklearn/linear_model/logistic.py +index 1999f1dae..dc342e822 100644 +--- a/sklearn/linear_model/logistic.py ++++ b/sklearn/linear_model/logistic.py +@@ -2170,7 +2170,7 @@ class LogisticRegressionCV(LogisticRegression, BaseEstimator, + # Take the best scores across every fold and the average of + # all coefficients corresponding to the best scores. + best_indices = np.argmax(scores, axis=1) +- if self.multi_class == 'ovr': ++ if multi_class == "ovr": + w = np.mean([coefs_paths[i, best_indices[i], :] + for i in range(len(folds))], axis=0) + else: +@@ -2181,7 +2181,8 @@ class LogisticRegressionCV(LogisticRegression, BaseEstimator, + self.C_.append(np.mean(self.Cs_[best_indices_C])) + + best_indices_l1 = best_indices // len(self.Cs_) +- self.l1_ratio_.append(np.mean(l1_ratios_[best_indices_l1])) ++ l1_ratio = l1_ratios_[0] if l1_ratios_[0] is None else np.mean(np.asarray(l1_ratios_)[best_indices_l1]) ++ self.l1_ratio_.append(l1_ratio) + + if multi_class == 'multinomial': + self.C_ = np.tile(self.C_, n_classes) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-pwpl2kol/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpi6vcw30x/tmp + creating /tmp/tmpi6vcw30x/tmp/tmpi6vcw30x + compile options: '-c' + gcc: /tmp/tmpi6vcw30x/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpi6vcw30x/tmp/tmpi6vcw30x/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpi6vcw30x/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 16%] +........................................................................ [ 57%] +........................................................................ [ 98%] +... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_2_classes +PASSED sklearn/linear_model/tests/test_logistic.py::test_error +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_mock_scorer +PASSED sklearn/linear_model/tests/test_logistic.py::test_logistic_cv_score_does_not_warn_by_default +PASSED sklearn/linear_model/tests/test_logistic.py::test_lr_liblinear_warning +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_3_classes +PASSED sklearn/linear_model/tests/test_logistic.py::test_predict_iris +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_multinomial_validation[sag] +PASSED 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sklearn/linear_model/tests/test_logistic.py::test_penalty_none[lbfgs] +PASSED sklearn/linear_model/tests/test_logistic.py::test_penalty_none[newton-cg] +PASSED sklearn/linear_model/tests/test_logistic.py::test_penalty_none[sag] +PASSED sklearn/linear_model/tests/test_logistic.py::test_penalty_none[saga] +====================== 175 passed, 446 warnings in 8.51s ======================= + This problem is unconstrained. +RUNNING THE L-BFGS-B CODE + + * * * + +Machine precision = 2.220D-16 + N = 3 M = 10 + +At X0 0 variables are exactly at the bounds + +At iterate 0 f= 1.38629D+02 |proj g|= 6.27865D+01 + + * * * + +Tit = total number of iterations +Tnf = total number of function evaluations +Tnint = total number of segments explored during Cauchy searches +Skip = number of BFGS updates skipped +Nact = number of active bounds at final generalized Cauchy point +Projg = norm of the final projected gradient +F = final function value + + * * * + + N Tit Tnf Tnint Skip Nact Projg F + 3 1 2 1 0 0 2.422D+01 9.713D+01 + F = 97.133816163368238 + +STOP: TOTAL NO. of ITERATIONS REACHED LIMIT ++ : '>>>>> End Test Output' ++ git checkout a5743ed36fbd3fbc8e351bdab16561fbfca7dfa1 sklearn/linear_model/tests/test_logistic.py +Updated 1 path from 7d7295340 diff --git a/verify_logs/scikit-learn__scikit-learn-14141_log.txt b/verify_logs/scikit-learn__scikit-learn-14141_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..9cafa3908e29df114f36db90c85c391a8477aac5 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14141_log.txt @@ -0,0 +1,534 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/utils/_show_versions.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 32cc3ffaf27772d4bdbccb7373ff36ad81e6550a +Author: SWE-bench +Date: Wed Sep 10 15:36:49 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 3d997697fdd166eff428ea9fd35734b6a8ba113e +diff --git a/sklearn/utils/_show_versions.py b/sklearn/utils/_show_versions.py +index e5d3141bf..ecba9ec68 100644 +--- a/sklearn/utils/_show_versions.py ++++ b/sklearn/utils/_show_versions.py +@@ -48,6 +48,7 @@ def _get_deps_info(): + "Cython", + "pandas", + "matplotlib", ++ "joblib", + ] + + def get_version(module): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-av30znzb/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + blas_opt_info: + blas_mkl_info: + customize UnixCCompiler + libraries mkl_rt not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + blis_info: + libraries blis not found in ['/opt/miniconda3/envs/testbed/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] + NOT AVAILABLE + + openblas_info: + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + creating /tmp/tmpo9pd9r4u/tmp + creating /tmp/tmpo9pd9r4u/tmp/tmpo9pd9r4u + compile options: '-c' + gcc: /tmp/tmpo9pd9r4u/source.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ /tmp/tmpo9pd9r4u/tmp/tmpo9pd9r4u/source.o -L/opt/miniconda3/envs/testbed/lib -lopenblas -o /tmp/tmpo9pd9r4u/a.out + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + FOUND: + libraries = ['openblas', 'openblas'] + library_dirs = ['/opt/miniconda3/envs/testbed/lib'] + language = c + define_macros = [('HAVE_CBLAS', None)] + + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/utils/tests/test_show_versions.py::test_get_sys_info +PASSED sklearn/utils/tests/test_show_versions.py::test_get_deps_info +PASSED sklearn/utils/tests/test_show_versions.py::test_show_versions_with_blas +============================== 3 passed in 0.43s =============================== ++ : '>>>>> End Test Output' ++ git checkout 3d997697fdd166eff428ea9fd35734b6a8ba113e sklearn/utils/tests/test_show_versions.py +Updated 1 path from 74477c071 diff --git a/verify_logs/scikit-learn__scikit-learn-14496_log.txt b/verify_logs/scikit-learn__scikit-learn-14496_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..2e27f41a5aca9b762f497fc8b6e9ac2f5e0734a2 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14496_log.txt @@ -0,0 +1,564 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/cluster/optics_.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 37aecc533478b18eee7bdff78ed7e009e976d117 +Author: SWE-bench +Date: Wed Sep 10 15:38:51 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff d49a6f13af2f22228d430ac64ac2b518937800d0 +diff --git a/sklearn/cluster/optics_.py b/sklearn/cluster/optics_.py +index 4f7eb11ab..a5eb73403 100755 +--- a/sklearn/cluster/optics_.py ++++ b/sklearn/cluster/optics_.py +@@ -437,7 +437,9 @@ if metric=’precomputed’. + n_samples = X.shape[0] + _validate_size(min_samples, n_samples, 'min_samples') + if min_samples <= 1: +- min_samples = max(2, min_samples * n_samples) ++ min_samples = int(round(max(2, min_samples * n_samples))) ++ else: ++ min_samples = int(min_samples) + + # Start all points as 'unprocessed' ## + reachability_ = np.empty(n_samples) +@@ -619,12 +621,16 @@ def cluster_optics_xi(reachability, predecessor, ordering, min_samples, + n_samples = len(reachability) + _validate_size(min_samples, n_samples, 'min_samples') + if min_samples <= 1: +- min_samples = max(2, min_samples * n_samples) ++ min_samples = int(round(max(2, min_samples * n_samples))) ++ else: ++ min_samples = int(min_samples) + if min_cluster_size is None: + min_cluster_size = min_samples + _validate_size(min_cluster_size, n_samples, 'min_cluster_size') + if min_cluster_size <= 1: +- min_cluster_size = max(2, min_cluster_size * n_samples) ++ min_cluster_size = int(round(max(2, min_cluster_size * n_samples))) ++ else: ++ min_cluster_size = int(min_cluster_size) + + clusters = _xi_cluster(reachability[ordering], predecessor[ordering], + ordering, xi, ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-bm6q5bnl/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.lgamma" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 87%] +..... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/cluster/tests/test_optics.py::test_extend_downward[r_plot0-3] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_downward[r_plot1-0] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_downward[r_plot2-4] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_downward[r_plot3-4] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_upward[r_plot0-6] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_upward[r_plot1-0] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_upward[r_plot2-0] +PASSED sklearn/cluster/tests/test_optics.py::test_extend_upward[r_plot3-2] +PASSED sklearn/cluster/tests/test_optics.py::test_the_extract_xi_labels[ordering0-clusters0-expected0] +PASSED sklearn/cluster/tests/test_optics.py::test_the_extract_xi_labels[ordering1-clusters1-expected1] +PASSED sklearn/cluster/tests/test_optics.py::test_the_extract_xi_labels[ordering2-clusters2-expected2] +PASSED sklearn/cluster/tests/test_optics.py::test_the_extract_xi_labels[ordering3-clusters3-expected3] +PASSED sklearn/cluster/tests/test_optics.py::test_extract_xi +PASSED sklearn/cluster/tests/test_optics.py::test_cluster_hierarchy_ +PASSED sklearn/cluster/tests/test_optics.py::test_correct_number_of_clusters +PASSED sklearn/cluster/tests/test_optics.py::test_minimum_number_of_sample_check +PASSED sklearn/cluster/tests/test_optics.py::test_bad_extract +PASSED sklearn/cluster/tests/test_optics.py::test_bad_reachability +PASSED sklearn/cluster/tests/test_optics.py::test_close_extract +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[3-0.1] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[3-0.3] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[3-0.5] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[10-0.1] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[10-0.3] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[10-0.5] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[20-0.1] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[20-0.3] +PASSED sklearn/cluster/tests/test_optics.py::test_dbscan_optics_parity[20-0.5] +PASSED sklearn/cluster/tests/test_optics.py::test_min_samples_edge_case +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size[2] +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size_invalid[0] +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size_invalid[-1] +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size_invalid[1.1] +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size_invalid[2.2] +PASSED sklearn/cluster/tests/test_optics.py::test_min_cluster_size_invalid2 +PASSED sklearn/cluster/tests/test_optics.py::test_processing_order +PASSED sklearn/cluster/tests/test_optics.py::test_compare_to_ELKI +PASSED sklearn/cluster/tests/test_optics.py::test_wrong_cluster_method +PASSED sklearn/cluster/tests/test_optics.py::test_extract_dbscan +PASSED sklearn/cluster/tests/test_optics.py::test_precomputed_dists +======================== 40 passed, 1 warning in 2.06s ========================= ++ : '>>>>> End Test Output' ++ git checkout d49a6f13af2f22228d430ac64ac2b518937800d0 sklearn/cluster/tests/test_optics.py +Updated 1 path from a03b3bd56 diff --git a/verify_logs/scikit-learn__scikit-learn-14629_log.txt b/verify_logs/scikit-learn__scikit-learn-14629_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..86bad51176279a8492ceb02dfbb089fcb2b41b8c --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14629_log.txt @@ -0,0 +1,550 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/multioutput.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 672f06155849f50c2c2f9f65fa590738a299725a +Author: SWE-bench +Date: Wed Sep 10 15:41:19 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 4aded39b5663d943f6a4809abacfa9cae3d7fb6a +diff --git a/sklearn/multioutput.py b/sklearn/multioutput.py +index 463b72d40..ed4a1513c 100644 +--- a/sklearn/multioutput.py ++++ b/sklearn/multioutput.py +@@ -325,6 +325,30 @@ class MultiOutputClassifier(MultiOutputEstimator, ClassifierMixin): + def __init__(self, estimator, n_jobs=None): + super().__init__(estimator, n_jobs) + ++ def fit(self, X, Y, sample_weight=None): ++ """Fit the model to data matrix X and targets Y. ++ ++ Parameters ++ ---------- ++ X : {array-like, sparse matrix}, shape (n_samples, n_features) ++ The input data. ++ ++ Y : array-like, shape (n_samples, n_outputs) ++ The target values. ++ ++ sample_weight : array-like, shape (n_samples,) or None, optional (default=None) ++ Sample weights. ++ ++ Returns ++ ------- ++ self : object ++ Returns self. ++ """ ++ super().fit(X, Y, sample_weight=sample_weight) ++ self.classes_ = [estimator.classes_ ++ for estimator in self.estimators_] ++ return self ++ + def predict_proba(self, X): + """Probability estimates. + Returns prediction probabilities for each class of each output. ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-4j41nx0v/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/tests/test_multioutput.py::test_multi_target_regression +PASSED sklearn/tests/test_multioutput.py::test_multi_target_regression_partial_fit +PASSED sklearn/tests/test_multioutput.py::test_multi_target_regression_one_target +PASSED sklearn/tests/test_multioutput.py::test_multi_target_sparse_regression +PASSED sklearn/tests/test_multioutput.py::test_multi_target_sample_weights_api +PASSED sklearn/tests/test_multioutput.py::test_multi_target_sample_weight_partial_fit +PASSED sklearn/tests/test_multioutput.py::test_multi_target_sample_weights +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification_partial_fit_parallelism +PASSED sklearn/tests/test_multioutput.py::test_multi_output_predict_proba +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification_partial_fit +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification_partial_fit_no_first_classes_exception +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification +PASSED sklearn/tests/test_multioutput.py::test_multiclass_multioutput_estimator +PASSED sklearn/tests/test_multioutput.py::test_multiclass_multioutput_estimator_predict_proba +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification_sample_weights +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classification_partial_fit_sample_weights +PASSED sklearn/tests/test_multioutput.py::test_multi_output_exceptions +PASSED sklearn/tests/test_multioutput.py::test_classifier_chain_fit_and_predict_with_linear_svc +PASSED sklearn/tests/test_multioutput.py::test_classifier_chain_fit_and_predict_with_sparse_data +PASSED sklearn/tests/test_multioutput.py::test_classifier_chain_vs_independent_models +PASSED sklearn/tests/test_multioutput.py::test_base_chain_fit_and_predict +PASSED sklearn/tests/test_multioutput.py::test_base_chain_fit_and_predict_with_sparse_data_and_cv +PASSED sklearn/tests/test_multioutput.py::test_base_chain_random_order +PASSED sklearn/tests/test_multioutput.py::test_base_chain_crossval_fit_and_predict +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classes_[estimator0] +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classes_[estimator1] +PASSED sklearn/tests/test_multioutput.py::test_multi_output_classes_[estimator2] +======================= 27 passed, 61 warnings in 6.07s ======================== ++ : '>>>>> End Test Output' ++ git checkout 4aded39b5663d943f6a4809abacfa9cae3d7fb6a sklearn/tests/test_multioutput.py +Updated 1 path from 69762d3f5 diff --git a/verify_logs/scikit-learn__scikit-learn-14710_log.txt b/verify_logs/scikit-learn__scikit-learn-14710_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..9484b375593b7d19c67d2665efcce26b83fc0aeb --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14710_log.txt @@ -0,0 +1,1537 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 7cdd5c599b25a551659e65739ad7135743a7009d +Author: SWE-bench +Date: Wed Sep 10 15:40:47 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 4b6273b87442a4437d8b3873ea3022ae163f4fdf +diff --git a/sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py b/sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py +index ad6a5a8ca..3170e4000 100644 +--- a/sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py ++++ b/sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py +@@ -426,11 +426,15 @@ class BaseHistGradientBoosting(BaseEstimator, ABC): + + Scores are computed on validation data or on training data. + """ ++ if hasattr(self, 'classes_'): ++ y_small_train = self.classes_[y_small_train.astype(int)] + self.train_score_.append( + self.scorer_(self, X_binned_small_train, y_small_train) + ) + + if self._use_validation_data: ++ if hasattr(self, 'classes_'): ++ y_val = self.classes_[y_val.astype(int)] + self.validation_score_.append( + self.scorer_(self, X_binned_val, y_val) + ) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-2eh619zp/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.common" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 1%] +........................................................................ [ 91%] +....... [100%] + +==================================== PASSES ==================================== +______ test_early_stopping_regression[neg_mean_squared_error-0.1-5-1e-07] ______ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 13.397 s +Binning 0.000 GB of validation data: 12.902 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 7 leaves, max depth = 3, train score: -14933.30065, val score: -9147.45505, in 0.002s +[2/200] 1 tree, 7 leaves, max depth = 3, train score: -12696.31486, val score: -10179.76766, in 0.002s +[3/200] 1 tree, 7 leaves, max depth = 3, train score: -10858.64123, val score: -9837.00593, in 0.002s +[4/200] 1 tree, 7 leaves, max depth = 4, train score: -9368.81837, val score: -10419.26747, in 0.003s +[5/200] 1 tree, 7 leaves, max depth = 3, train score: -8084.07195, val score: -11229.12184, in 0.091s +Fit 5 trees in 26.400 s, (35 total leaves) +Time spent computing histograms: 0.095s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +______ test_early_stopping_regression[neg_mean_squared_error-None-5-0.1] _______ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.002 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 8 leaves, max depth = 4, train score: -14225.47693, in 0.001s +[2/200] 1 tree, 8 leaves, max depth = 4, train score: -12176.96503, in 0.001s +[3/200] 1 tree, 8 leaves, max depth = 4, train score: -10249.37480, in 0.001s +[4/200] 1 tree, 8 leaves, max depth = 4, train score: -8688.02670, in 0.091s +[5/200] 1 tree, 8 leaves, max depth = 4, train score: -7478.47398, in 0.003s +[6/200] 1 tree, 7 leaves, max depth = 4, train score: -6428.70959, in 0.003s +[7/200] 1 tree, 7 leaves, max depth = 5, train score: -5483.47343, in 0.002s +[8/200] 1 tree, 8 leaves, max depth = 4, train score: -4676.16481, in 0.001s +[9/200] 1 tree, 7 leaves, max depth = 5, train score: -4027.81069, in 0.001s +[10/200] 1 tree, 8 leaves, max depth = 6, train score: -3479.43963, in 0.001s +[11/200] 1 tree, 8 leaves, max depth = 5, train score: -3033.81730, in 0.001s +[12/200] 1 tree, 8 leaves, max depth = 7, train score: -2650.46139, in 0.089s +[13/200] 1 tree, 8 leaves, max depth = 5, train score: -2311.20825, in 0.001s +[14/200] 1 tree, 8 leaves, max depth = 4, train score: -1991.69147, in 0.003s +[15/200] 1 tree, 7 leaves, max depth = 5, train score: -1744.11691, in 0.003s +[16/200] 1 tree, 8 leaves, max depth = 5, train score: -1538.03353, in 0.003s +[17/200] 1 tree, 8 leaves, max depth = 4, train score: -1333.36533, in 0.001s +[18/200] 1 tree, 7 leaves, max depth = 5, train score: -1176.11817, in 0.001s +[19/200] 1 tree, 8 leaves, max depth = 5, train score: -1044.90030, in 0.001s +[20/200] 1 tree, 9 leaves, max depth = 5, train score: -911.89338, in 0.091s +[21/200] 1 tree, 9 leaves, max depth = 6, train score: -800.92275, in 0.001s +[22/200] 1 tree, 8 leaves, max depth = 5, train score: -716.89535, in 0.001s +[23/200] 1 tree, 7 leaves, max depth = 6, train score: -654.42760, in 0.001s +[24/200] 1 tree, 9 leaves, max depth = 6, train score: -579.73365, in 0.096s +[25/200] 1 tree, 8 leaves, max depth = 5, train score: -515.78194, in 0.002s +[26/200] 1 tree, 8 leaves, max depth = 5, train score: -459.32122, in 0.001s +[27/200] 1 tree, 8 leaves, max depth = 5, train score: -409.24650, in 0.001s +[28/200] 1 tree, 9 leaves, max depth = 6, train score: -367.47790, in 0.001s +[29/200] 1 tree, 8 leaves, max depth = 5, train score: -335.66521, in 0.001s +[30/200] 1 tree, 9 leaves, max depth = 5, train score: -297.76401, in 0.001s +[31/200] 1 tree, 8 leaves, max depth = 6, train score: -272.96701, in 0.001s +[32/200] 1 tree, 9 leaves, max depth = 6, train score: -248.19832, in 0.001s +[33/200] 1 tree, 9 leaves, max depth = 7, train score: -225.81113, in 0.091s +[34/200] 1 tree, 8 leaves, max depth = 5, train score: -205.90128, in 0.001s +[35/200] 1 tree, 8 leaves, max depth = 5, train score: -189.92080, in 0.001s +[36/200] 1 tree, 8 leaves, max depth = 7, train score: -176.85519, in 0.001s +[37/200] 1 tree, 9 leaves, max depth = 6, train score: -163.84071, in 0.001s +[38/200] 1 tree, 8 leaves, max depth = 7, train score: -150.32988, in 0.001s +[39/200] 1 tree, 8 leaves, max depth = 5, train score: -139.70658, in 0.001s +[40/200] 1 tree, 7 leaves, max depth = 4, train score: -129.94358, in 0.002s +[41/200] 1 tree, 8 leaves, max depth = 6, train score: -121.59335, in 0.091s +[42/200] 1 tree, 8 leaves, max depth = 6, train score: -111.89196, in 0.002s +[43/200] 1 tree, 8 leaves, max depth = 7, train score: -104.45571, in 0.001s +[44/200] 1 tree, 9 leaves, max depth = 6, train score: -97.88336, in 0.001s +[45/200] 1 tree, 8 leaves, max depth = 7, train score: -90.87299, in 0.001s +[46/200] 1 tree, 7 leaves, max depth = 6, train score: -85.43359, in 0.001s +[47/200] 1 tree, 8 leaves, max depth = 6, train score: -80.05618, in 0.001s +[48/200] 1 tree, 8 leaves, max depth = 7, train score: -74.68913, in 0.001s +[49/200] 1 tree, 8 leaves, max depth = 7, train score: -70.65725, in 0.001s +[50/200] 1 tree, 9 leaves, max depth = 7, train score: -65.66765, in 0.092s +[51/200] 1 tree, 9 leaves, max depth = 7, train score: -59.75878, in 0.001s +[52/200] 1 tree, 9 leaves, max depth = 7, train score: -56.10258, in 0.001s +[53/200] 1 tree, 7 leaves, max depth = 5, train score: -51.34178, in 0.001s +[54/200] 1 tree, 9 leaves, max depth = 8, train score: -47.82090, in 0.001s +[55/200] 1 tree, 9 leaves, max depth = 6, train score: -42.45177, in 0.001s +[56/200] 1 tree, 9 leaves, max depth = 7, train score: -39.48291, in 0.001s +[57/200] 1 tree, 8 leaves, max depth = 6, train score: -36.44386, in 0.001s +[58/200] 1 tree, 8 leaves, max depth = 6, train score: -34.28559, in 0.108s +[59/200] 1 tree, 8 leaves, max depth = 7, train score: -31.95874, in 0.082s +[60/200] 1 tree, 9 leaves, max depth = 6, train score: -29.25862, in 0.001s +[61/200] 1 tree, 9 leaves, max depth = 7, train score: -27.72101, in 0.001s +[62/200] 1 tree, 8 leaves, max depth = 7, train score: -26.30325, in 0.001s +[63/200] 1 tree, 9 leaves, max depth = 7, train score: -24.65700, in 0.001s +[64/200] 1 tree, 8 leaves, max depth = 7, train score: -23.47527, in 0.001s +[65/200] 1 tree, 8 leaves, max depth = 7, train score: -22.14954, in 0.001s +[66/200] 1 tree, 8 leaves, max depth = 7, train score: -21.11851, in 0.001s +[67/200] 1 tree, 9 leaves, max depth = 7, train score: -19.91447, in 0.001s +[68/200] 1 tree, 8 leaves, max depth = 7, train score: -18.78488, in 0.089s +[69/200] 1 tree, 9 leaves, max depth = 8, train score: -17.74892, in 0.001s +[70/200] 1 tree, 7 leaves, max depth = 6, train score: -17.00395, in 0.002s +[71/200] 1 tree, 9 leaves, max depth = 8, train score: -16.01575, in 0.005s +[72/200] 1 tree, 8 leaves, max depth = 6, train score: -15.10901, in 0.004s +[73/200] 1 tree, 8 leaves, max depth = 6, train score: -14.44367, in 0.089s +[74/200] 1 tree, 9 leaves, max depth = 7, train score: -13.62321, in 0.001s +[75/200] 1 tree, 8 leaves, max depth = 7, train score: -12.96723, in 0.001s +[76/200] 1 tree, 8 leaves, max depth = 6, train score: -12.43202, in 0.001s +[77/200] 1 tree, 9 leaves, max depth = 7, train score: -11.79314, in 0.001s +[78/200] 1 tree, 8 leaves, max depth = 6, train score: -11.23240, in 0.001s +[79/200] 1 tree, 10 leaves, max depth = 8, train score: -10.68134, in 0.002s +[80/200] 1 tree, 9 leaves, max depth = 7, train score: -10.15603, in 0.091s +[81/200] 1 tree, 9 leaves, max depth = 7, train score: -9.64009, in 0.001s +[82/200] 1 tree, 8 leaves, max depth = 6, train score: -9.21361, in 0.001s +[83/200] 1 tree, 9 leaves, max depth = 7, train score: -8.73431, in 0.001s +[84/200] 1 tree, 8 leaves, max depth = 7, train score: -8.33448, in 0.001s +[85/200] 1 tree, 9 leaves, max depth = 6, train score: -7.99919, in 0.001s +[86/200] 1 tree, 8 leaves, max depth = 7, train score: -7.62291, in 0.002s +[87/200] 1 tree, 9 leaves, max depth = 7, train score: -7.26931, in 0.001s +[88/200] 1 tree, 9 leaves, max depth = 7, train score: -6.92953, in 0.092s +[89/200] 1 tree, 9 leaves, max depth = 6, train score: -6.55974, in 0.001s +[90/200] 1 tree, 9 leaves, max depth = 8, train score: -6.26552, in 0.001s +[91/200] 1 tree, 9 leaves, max depth = 7, train score: -6.02406, in 0.001s +[92/200] 1 tree, 8 leaves, max depth = 7, train score: -5.76306, in 0.001s +[93/200] 1 tree, 8 leaves, max depth = 6, train score: -5.53783, in 0.001s +[94/200] 1 tree, 8 leaves, max depth = 7, train score: -5.29419, in 0.001s +[95/200] 1 tree, 9 leaves, max depth = 7, train score: -5.05433, in 0.092s +[96/200] 1 tree, 9 leaves, max depth = 7, train score: -4.82937, in 0.004s +[97/200] 1 tree, 9 leaves, max depth = 7, train score: -4.62345, in 0.002s +[98/200] 1 tree, 8 leaves, max depth = 7, train score: -4.43211, in 0.001s +[99/200] 1 tree, 9 leaves, max depth = 7, train score: -4.23661, in 0.001s +[100/200] 1 tree, 9 leaves, max depth = 6, train score: -4.03495, in 0.091s +[101/200] 1 tree, 8 leaves, max depth = 6, train score: -3.87910, in 0.001s +[102/200] 1 tree, 9 leaves, max depth = 7, train score: -3.71716, in 0.001s +[103/200] 1 tree, 9 leaves, max depth = 7, train score: -3.55866, in 0.001s +[104/200] 1 tree, 8 leaves, max depth = 7, train score: -3.40824, in 0.004s +[105/200] 1 tree, 8 leaves, max depth = 6, train score: -3.26870, in 0.090s +[106/200] 1 tree, 8 leaves, max depth = 7, train score: -3.13239, in 0.001s +[107/200] 1 tree, 9 leaves, max depth = 8, train score: -3.00236, in 0.002s +[108/200] 1 tree, 8 leaves, max depth = 7, train score: -2.88012, in 0.001s +[109/200] 1 tree, 8 leaves, max depth = 5, train score: -2.77238, in 0.001s +[110/200] 1 tree, 9 leaves, max depth = 7, train score: -2.65749, in 0.002s +[111/200] 1 tree, 9 leaves, max depth = 7, train score: -2.54903, in 0.002s +[112/200] 1 tree, 8 leaves, max depth = 6, train score: -2.45330, in 0.092s +[113/200] 1 tree, 9 leaves, max depth = 8, train score: -2.35016, in 0.002s +[114/200] 1 tree, 8 leaves, max depth = 7, train score: -2.25157, in 0.001s +[115/200] 1 tree, 8 leaves, max depth = 7, train score: -2.16238, in 0.001s +[116/200] 1 tree, 9 leaves, max depth = 7, train score: -2.07315, in 0.002s +[117/200] 1 tree, 8 leaves, max depth = 7, train score: -1.99111, in 0.002s +[118/200] 1 tree, 9 leaves, max depth = 7, train score: -1.91103, in 0.090s +[119/200] 1 tree, 9 leaves, max depth = 7, train score: -1.83423, in 0.003s +[120/200] 1 tree, 8 leaves, max depth = 6, train score: -1.75617, in 0.004s +[121/200] 1 tree, 8 leaves, max depth = 5, train score: -1.69233, in 0.001s +[122/200] 1 tree, 8 leaves, max depth = 6, train score: -1.62507, in 0.002s +[123/200] 1 tree, 8 leaves, max depth = 7, train score: -1.56136, in 0.002s +[124/200] 1 tree, 8 leaves, max depth = 5, train score: -1.50232, in 0.090s +[125/200] 1 tree, 9 leaves, max depth = 8, train score: -1.44286, in 0.002s +[126/200] 1 tree, 9 leaves, max depth = 8, train score: -1.38574, in 0.002s +[127/200] 1 tree, 8 leaves, max depth = 7, train score: -1.33112, in 0.002s +[128/200] 1 tree, 8 leaves, max depth = 7, train score: -1.27793, in 0.004s +[129/200] 1 tree, 8 leaves, max depth = 6, train score: -1.22784, in 0.002s +[130/200] 1 tree, 8 leaves, max depth = 7, train score: -1.17825, in 0.092s +[131/200] 1 tree, 9 leaves, max depth = 7, train score: -1.13201, in 0.002s +[132/200] 1 tree, 10 leaves, max depth = 8, train score: -1.08851, in 0.002s +[133/200] 1 tree, 9 leaves, max depth = 8, train score: -1.04661, in 0.002s +[134/200] 1 tree, 7 leaves, max depth = 5, train score: -1.00801, in 0.002s +[135/200] 1 tree, 9 leaves, max depth = 7, train score: -0.96822, in 0.091s +[136/200] 1 tree, 8 leaves, max depth = 7, train score: -0.93049, in 0.004s +[137/200] 1 tree, 8 leaves, max depth = 6, train score: -0.89478, in 0.002s +[138/200] 1 tree, 9 leaves, max depth = 7, train score: -0.85961, in 0.002s +[139/200] 1 tree, 8 leaves, max depth = 6, train score: -0.82579, in 0.092s +[140/200] 1 tree, 8 leaves, max depth = 6, train score: -0.79411, in 0.002s +[141/200] 1 tree, 7 leaves, max depth = 6, train score: -0.76506, in 0.002s +[142/200] 1 tree, 8 leaves, max depth = 7, train score: -0.73536, in 0.002s +[143/200] 1 tree, 9 leaves, max depth = 7, train score: -0.70690, in 0.002s +[144/200] 1 tree, 8 leaves, max depth = 7, train score: -0.68008, in 0.003s +[145/200] 1 tree, 8 leaves, max depth = 5, train score: -0.65577, in 0.095s +[146/200] 1 tree, 9 leaves, max depth = 7, train score: -0.63126, in 0.002s +[147/200] 1 tree, 8 leaves, max depth = 6, train score: -0.60730, in 0.002s +[148/200] 1 tree, 9 leaves, max depth = 5, train score: -0.58326, in 0.002s +[149/200] 1 tree, 7 leaves, max depth = 5, train score: -0.56165, in 0.090s +[150/200] 1 tree, 9 leaves, max depth = 6, train score: -0.53979, in 0.002s +[151/200] 1 tree, 9 leaves, max depth = 8, train score: -0.51940, in 0.002s +[152/200] 1 tree, 9 leaves, max depth = 7, train score: -0.49971, in 0.002s +[153/200] 1 tree, 9 leaves, max depth = 7, train score: -0.48096, in 0.096s +[154/200] 1 tree, 9 leaves, max depth = 6, train score: -0.46280, in 0.002s +Fit 154 trees in 2.500 s, (1283 total leaves) +Time spent computing histograms: 0.974s +Time spent finding best splits: 0.097s +Time spent applying splits: 0.222s +Time spent predicting: 0.095s +_______________ test_early_stopping_regression[None-0.1-5-1e-07] _______________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.095 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 7 leaves, max depth = 3, train score: 0.15607, val score: -0.11700, in 0.001s +[2/200] 1 tree, 7 leaves, max depth = 3, train score: 0.28249, val score: -0.24305, in 0.001s +[3/200] 1 tree, 7 leaves, max depth = 3, train score: 0.38634, val score: -0.20120, in 0.001s +[4/200] 1 tree, 7 leaves, max depth = 4, train score: 0.47054, val score: -0.27230, in 0.001s +[5/200] 1 tree, 7 leaves, max depth = 3, train score: 0.54314, val score: -0.37119, in 0.001s +Fit 5 trees in 0.101 s, (35 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +_______________ test_early_stopping_regression[None-None-5-0.1] ________________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.002 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 8 leaves, max depth = 4, train score: 0.15089, in 0.089s +[2/200] 1 tree, 8 leaves, max depth = 4, train score: 0.27316, in 0.001s +[3/200] 1 tree, 8 leaves, max depth = 4, train score: 0.38822, in 0.001s +[4/200] 1 tree, 8 leaves, max depth = 4, train score: 0.48142, in 0.001s +[5/200] 1 tree, 8 leaves, max depth = 4, train score: 0.55361, in 0.001s +[6/200] 1 tree, 7 leaves, max depth = 4, train score: 0.61627, in 0.001s +[7/200] 1 tree, 7 leaves, max depth = 5, train score: 0.67269, in 0.001s +[8/200] 1 tree, 8 leaves, max depth = 4, train score: 0.72088, in 0.001s +[9/200] 1 tree, 7 leaves, max depth = 5, train score: 0.75958, in 0.001s +[10/200] 1 tree, 8 leaves, max depth = 6, train score: 0.79231, in 0.001s +[11/200] 1 tree, 8 leaves, max depth = 5, train score: 0.81891, in 0.002s +[12/200] 1 tree, 8 leaves, max depth = 7, train score: 0.84180, in 0.091s +[13/200] 1 tree, 8 leaves, max depth = 5, train score: 0.86205, in 0.001s +[14/200] 1 tree, 8 leaves, max depth = 4, train score: 0.88112, in 0.001s +[15/200] 1 tree, 7 leaves, max depth = 5, train score: 0.89589, in 0.001s +[16/200] 1 tree, 8 leaves, max depth = 5, train score: 0.90820, in 0.001s +Fit 16 trees in 0.197 s, (124 total leaves) +Time spent computing histograms: 0.183s +Time spent finding best splits: 0.001s +Time spent applying splits: 0.002s +Time spent predicting: 0.000s +_______________ test_early_stopping_regression[loss-0.1-5-1e-07] _______________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.002 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 7 leaves, max depth = 3, train loss: 7466.65033, val loss: 4573.72752, in 0.001s +[2/200] 1 tree, 7 leaves, max depth = 3, train loss: 6348.15743, val loss: 5089.88383, in 0.000s +[3/200] 1 tree, 7 leaves, max depth = 3, train loss: 5429.32062, val loss: 4918.50296, in 0.089s +[4/200] 1 tree, 7 leaves, max depth = 4, train loss: 4684.40919, val loss: 5209.63373, in 0.001s +[5/200] 1 tree, 7 leaves, max depth = 3, train loss: 4042.03598, val loss: 5614.56092, in 0.001s +Fit 5 trees in 0.094 s, (35 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +_______________ test_early_stopping_regression[loss-None-5-0.1] ________________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.002 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 8 leaves, max depth = 4, train loss: 7112.73847, in 0.003s +[2/200] 1 tree, 8 leaves, max depth = 4, train loss: 6088.48251, in 0.001s +[3/200] 1 tree, 8 leaves, max depth = 4, train loss: 5124.68740, in 0.001s +[4/200] 1 tree, 8 leaves, max depth = 4, train loss: 4344.01335, in 0.001s +[5/200] 1 tree, 8 leaves, max depth = 4, train loss: 3739.23699, in 0.001s +[6/200] 1 tree, 7 leaves, max depth = 4, train loss: 3214.35480, in 0.089s +[7/200] 1 tree, 7 leaves, max depth = 5, train loss: 2741.73671, in 0.001s +[8/200] 1 tree, 8 leaves, max depth = 4, train loss: 2338.08241, in 0.001s +[9/200] 1 tree, 7 leaves, max depth = 5, train loss: 2013.90534, in 0.001s +[10/200] 1 tree, 8 leaves, max depth = 6, train loss: 1739.71981, in 0.003s +[11/200] 1 tree, 8 leaves, max depth = 5, train loss: 1516.90865, in 0.002s +[12/200] 1 tree, 8 leaves, max depth = 7, train loss: 1325.23069, in 0.001s +[13/200] 1 tree, 8 leaves, max depth = 5, train loss: 1155.60412, in 0.001s +[14/200] 1 tree, 8 leaves, max depth = 4, train loss: 995.84574, in 0.001s +[15/200] 1 tree, 7 leaves, max depth = 5, train loss: 872.05846, in 0.000s +[16/200] 1 tree, 8 leaves, max depth = 5, train loss: 769.01676, in 0.001s +[17/200] 1 tree, 8 leaves, max depth = 4, train loss: 666.68267, in 0.001s +[18/200] 1 tree, 7 leaves, max depth = 5, train loss: 588.05909, in 0.000s +[19/200] 1 tree, 8 leaves, max depth = 5, train loss: 522.45015, in 0.089s +[20/200] 1 tree, 9 leaves, max depth = 5, train loss: 455.94669, in 0.003s +[21/200] 1 tree, 9 leaves, max depth = 6, train loss: 400.46137, in 0.001s +[22/200] 1 tree, 8 leaves, max depth = 5, train loss: 358.44767, in 0.001s +[23/200] 1 tree, 7 leaves, max depth = 6, train loss: 327.21380, in 0.001s +[24/200] 1 tree, 9 leaves, max depth = 6, train loss: 289.86683, in 0.001s +[25/200] 1 tree, 8 leaves, max depth = 5, train loss: 257.89097, in 0.001s +[26/200] 1 tree, 8 leaves, max depth = 5, train loss: 229.66061, in 0.001s +[27/200] 1 tree, 8 leaves, max depth = 5, train loss: 204.62325, in 0.001s +[28/200] 1 tree, 9 leaves, max depth = 6, train loss: 183.73895, in 0.003s +[29/200] 1 tree, 8 leaves, max depth = 5, train loss: 167.83260, in 0.190s +[30/200] 1 tree, 9 leaves, max depth = 5, train loss: 148.88201, in 0.001s +[31/200] 1 tree, 8 leaves, max depth = 6, train loss: 136.48351, in 0.001s +[32/200] 1 tree, 9 leaves, max depth = 6, train loss: 124.09916, in 0.001s +[33/200] 1 tree, 9 leaves, max depth = 7, train loss: 112.90556, in 0.001s +[34/200] 1 tree, 8 leaves, max depth = 5, train loss: 102.95064, in 0.001s +[35/200] 1 tree, 8 leaves, max depth = 5, train loss: 94.96040, in 0.001s +[36/200] 1 tree, 8 leaves, max depth = 7, train loss: 88.42759, in 0.001s +[37/200] 1 tree, 9 leaves, max depth = 6, train loss: 81.92035, in 0.003s +[38/200] 1 tree, 8 leaves, max depth = 7, train loss: 75.16494, in 0.001s +[39/200] 1 tree, 8 leaves, max depth = 5, train loss: 69.85329, in 0.001s +[40/200] 1 tree, 7 leaves, max depth = 4, train loss: 64.97179, in 0.000s +[41/200] 1 tree, 8 leaves, max depth = 6, train loss: 60.79667, in 0.001s +[42/200] 1 tree, 8 leaves, max depth = 6, train loss: 55.94598, in 0.092s +[43/200] 1 tree, 8 leaves, max depth = 7, train loss: 52.22785, in 0.001s +[44/200] 1 tree, 9 leaves, max depth = 6, train loss: 48.94168, in 0.001s +[45/200] 1 tree, 8 leaves, max depth = 7, train loss: 45.43650, in 0.003s +[46/200] 1 tree, 7 leaves, max depth = 6, train loss: 42.71680, in 0.002s +[47/200] 1 tree, 8 leaves, max depth = 6, train loss: 40.02809, in 0.001s +[48/200] 1 tree, 8 leaves, max depth = 7, train loss: 37.34457, in 0.001s +[49/200] 1 tree, 8 leaves, max depth = 7, train loss: 35.32862, in 0.001s +[50/200] 1 tree, 9 leaves, max depth = 7, train loss: 32.83382, in 0.093s +[51/200] 1 tree, 9 leaves, max depth = 7, train loss: 29.87939, in 0.001s +[52/200] 1 tree, 9 leaves, max depth = 7, train loss: 28.05129, in 0.001s +[53/200] 1 tree, 7 leaves, max depth = 5, train loss: 25.67089, in 0.001s +[54/200] 1 tree, 9 leaves, max depth = 8, train loss: 23.91045, in 0.003s +[55/200] 1 tree, 9 leaves, max depth = 6, train loss: 21.22589, in 0.001s +[56/200] 1 tree, 9 leaves, max depth = 7, train loss: 19.74145, in 0.001s +[57/200] 1 tree, 8 leaves, max depth = 6, train loss: 18.22193, in 0.001s +[58/200] 1 tree, 8 leaves, max depth = 6, train loss: 17.14279, in 0.089s +[59/200] 1 tree, 8 leaves, max depth = 7, train loss: 15.97937, in 0.001s +[60/200] 1 tree, 9 leaves, max depth = 6, train loss: 14.62931, in 0.001s +[61/200] 1 tree, 9 leaves, max depth = 7, train loss: 13.86051, in 0.002s +[62/200] 1 tree, 8 leaves, max depth = 7, train loss: 13.15163, in 0.003s +[63/200] 1 tree, 9 leaves, max depth = 7, train loss: 12.32850, in 0.001s +[64/200] 1 tree, 8 leaves, max depth = 7, train loss: 11.73763, in 0.001s +[65/200] 1 tree, 8 leaves, max depth = 7, train loss: 11.07477, in 0.001s +[66/200] 1 tree, 8 leaves, max depth = 7, train loss: 10.55925, in 0.001s +[67/200] 1 tree, 9 leaves, max depth = 7, train loss: 9.95723, in 0.001s +[68/200] 1 tree, 8 leaves, max depth = 7, train loss: 9.39244, in 0.001s +[69/200] 1 tree, 9 leaves, max depth = 8, train loss: 8.87446, in 0.091s +[70/200] 1 tree, 7 leaves, max depth = 6, train loss: 8.50197, in 0.003s +[71/200] 1 tree, 9 leaves, max depth = 8, train loss: 8.00788, in 0.001s +[72/200] 1 tree, 8 leaves, max depth = 6, train loss: 7.55450, in 0.001s +[73/200] 1 tree, 8 leaves, max depth = 6, train loss: 7.22184, in 0.001s +[74/200] 1 tree, 9 leaves, max depth = 7, train loss: 6.81160, in 0.001s +[75/200] 1 tree, 8 leaves, max depth = 7, train loss: 6.48362, in 0.001s +[76/200] 1 tree, 8 leaves, max depth = 6, train loss: 6.21601, in 0.001s +[77/200] 1 tree, 9 leaves, max depth = 7, train loss: 5.89657, in 0.001s +[78/200] 1 tree, 8 leaves, max depth = 6, train loss: 5.61620, in 0.003s +[79/200] 1 tree, 10 leaves, max depth = 8, train loss: 5.34067, in 0.001s +[80/200] 1 tree, 9 leaves, max depth = 7, train loss: 5.07802, in 0.090s +[81/200] 1 tree, 9 leaves, max depth = 7, train loss: 4.82004, in 0.001s +[82/200] 1 tree, 8 leaves, max depth = 6, train loss: 4.60681, in 0.001s +[83/200] 1 tree, 9 leaves, max depth = 7, train loss: 4.36715, in 0.001s +[84/200] 1 tree, 8 leaves, max depth = 7, train loss: 4.16724, in 0.001s +[85/200] 1 tree, 9 leaves, max depth = 6, train loss: 3.99960, in 0.001s +[86/200] 1 tree, 8 leaves, max depth = 7, train loss: 3.81145, in 0.001s +[87/200] 1 tree, 9 leaves, max depth = 7, train loss: 3.63466, in 0.001s +[88/200] 1 tree, 9 leaves, max depth = 7, train loss: 3.46476, in 0.001s +[89/200] 1 tree, 9 leaves, max depth = 6, train loss: 3.27987, in 0.001s +[90/200] 1 tree, 9 leaves, max depth = 8, train loss: 3.13276, in 0.089s +[91/200] 1 tree, 9 leaves, max depth = 7, train loss: 3.01203, in 0.001s +[92/200] 1 tree, 8 leaves, max depth = 7, train loss: 2.88153, in 0.001s +[93/200] 1 tree, 8 leaves, max depth = 6, train loss: 2.76891, in 0.001s +[94/200] 1 tree, 8 leaves, max depth = 7, train loss: 2.64709, in 0.001s +[95/200] 1 tree, 9 leaves, max depth = 7, train loss: 2.52717, in 0.001s +[96/200] 1 tree, 9 leaves, max depth = 7, train loss: 2.41469, in 0.002s +[97/200] 1 tree, 9 leaves, max depth = 7, train loss: 2.31173, in 0.001s +[98/200] 1 tree, 8 leaves, max depth = 7, train loss: 2.21605, in 0.001s +[99/200] 1 tree, 9 leaves, max depth = 7, train loss: 2.11831, in 0.001s +[100/200] 1 tree, 9 leaves, max depth = 6, train loss: 2.01748, in 0.001s +[101/200] 1 tree, 8 leaves, max depth = 6, train loss: 1.93955, in 0.001s +[102/200] 1 tree, 9 leaves, max depth = 7, train loss: 1.85858, in 0.001s +[103/200] 1 tree, 9 leaves, max depth = 7, train loss: 1.77933, in 0.001s +[104/200] 1 tree, 8 leaves, max depth = 7, train loss: 1.70412, in 0.089s +[105/200] 1 tree, 8 leaves, max depth = 6, train loss: 1.63435, in 0.001s +[106/200] 1 tree, 8 leaves, max depth = 7, train loss: 1.56619, in 0.001s +[107/200] 1 tree, 9 leaves, max depth = 8, train loss: 1.50118, in 0.001s +[108/200] 1 tree, 8 leaves, max depth = 7, train loss: 1.44006, in 0.001s +[109/200] 1 tree, 8 leaves, max depth = 5, train loss: 1.38619, in 0.001s +[110/200] 1 tree, 9 leaves, max depth = 7, train loss: 1.32874, in 0.001s +[111/200] 1 tree, 9 leaves, max depth = 7, train loss: 1.27452, in 0.001s +[112/200] 1 tree, 8 leaves, max depth = 6, train loss: 1.22665, in 0.001s +[113/200] 1 tree, 9 leaves, max depth = 8, train loss: 1.17508, in 0.001s +[114/200] 1 tree, 8 leaves, max depth = 7, train loss: 1.12579, in 0.001s +[115/200] 1 tree, 8 leaves, max depth = 7, train loss: 1.08119, in 0.001s +[116/200] 1 tree, 9 leaves, max depth = 7, train loss: 1.03657, in 0.001s +[117/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.99556, in 0.001s +[118/200] 1 tree, 9 leaves, max depth = 7, train loss: 0.95551, in 0.001s +[119/200] 1 tree, 9 leaves, max depth = 7, train loss: 0.91712, in 0.001s +[120/200] 1 tree, 8 leaves, max depth = 6, train loss: 0.87809, in 0.001s +[121/200] 1 tree, 8 leaves, max depth = 5, train loss: 0.84616, in 0.089s +[122/200] 1 tree, 8 leaves, max depth = 6, train loss: 0.81253, in 0.001s +[123/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.78068, in 0.001s +[124/200] 1 tree, 8 leaves, max depth = 5, train loss: 0.75116, in 0.001s +[125/200] 1 tree, 9 leaves, max depth = 8, train loss: 0.72143, in 0.001s +[126/200] 1 tree, 9 leaves, max depth = 8, train loss: 0.69287, in 0.001s +[127/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.66556, in 0.001s +[128/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.63896, in 0.001s +[129/200] 1 tree, 8 leaves, max depth = 6, train loss: 0.61392, in 0.001s +[130/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.58913, in 0.001s +[131/200] 1 tree, 9 leaves, max depth = 7, train loss: 0.56601, in 0.001s +[132/200] 1 tree, 10 leaves, max depth = 8, train loss: 0.54426, in 0.001s +[133/200] 1 tree, 9 leaves, max depth = 8, train loss: 0.52331, in 0.001s +[134/200] 1 tree, 7 leaves, max depth = 5, train loss: 0.50401, in 0.001s +[135/200] 1 tree, 9 leaves, max depth = 7, train loss: 0.48411, in 0.001s +[136/200] 1 tree, 8 leaves, max depth = 7, train loss: 0.46525, in 0.001s +[137/200] 1 tree, 8 leaves, max depth = 6, train loss: 0.44739, in 0.001s +Fit 137 trees in 1.208 s, (1140 total leaves) +Time spent computing histograms: 0.604s +Time spent finding best splits: 0.099s +Time spent applying splits: 0.196s +Time spent predicting: 0.006s +_____________ test_early_stopping_regression[None-None-None-None] ______________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.002 s +Fitting gradient boosted rounds: +[1/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[2/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[3/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[4/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[5/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[6/200] 1 tree, 7 leaves, max depth = 4, in 0.093s +[7/200] 1 tree, 7 leaves, max depth = 5, in 0.001s +[8/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[9/200] 1 tree, 7 leaves, max depth = 5, in 0.000s +[10/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[11/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[12/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[13/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[14/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[15/200] 1 tree, 7 leaves, max depth = 5, in 0.001s +[16/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[17/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[18/200] 1 tree, 7 leaves, max depth = 5, in 0.093s +[19/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[20/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[21/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[22/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[23/200] 1 tree, 7 leaves, max depth = 6, in 0.001s +[24/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[25/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[26/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[27/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[28/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[29/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[30/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[31/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[32/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[33/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[34/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[35/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[36/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[37/200] 1 tree, 9 leaves, max depth = 6, in 0.090s +[38/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[39/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[40/200] 1 tree, 7 leaves, max depth = 4, in 0.000s +[41/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[42/200] 1 tree, 8 leaves, max depth = 6, in 0.003s +[43/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[44/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[45/200] 1 tree, 8 leaves, max depth = 7, in 0.093s +[46/200] 1 tree, 7 leaves, max depth = 6, in 0.001s +[47/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[48/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[49/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[50/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[51/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[52/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[53/200] 1 tree, 7 leaves, max depth = 5, in 0.000s +[54/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[55/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[56/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[57/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[58/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[59/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[60/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[61/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[62/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[63/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[64/200] 1 tree, 8 leaves, max depth = 7, in 0.089s +[65/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[66/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[67/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[68/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[69/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[70/200] 1 tree, 7 leaves, max depth = 6, in 0.001s +[71/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[72/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[73/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[74/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[75/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[76/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[77/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[78/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[79/200] 1 tree, 10 leaves, max depth = 8, in 0.001s +[80/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[81/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[82/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[83/200] 1 tree, 9 leaves, max depth = 7, in 0.089s +[84/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[85/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[86/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[87/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[88/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[89/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[90/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[91/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[92/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[93/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[94/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[95/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[96/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[97/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[98/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[99/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[100/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[101/200] 1 tree, 8 leaves, max depth = 6, in 0.089s +[102/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[103/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[104/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[105/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[106/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[107/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[108/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[109/200] 1 tree, 8 leaves, max depth = 5, in 0.000s +[110/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[111/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[112/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[113/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[114/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[115/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[116/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[117/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[118/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[119/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[120/200] 1 tree, 8 leaves, max depth = 6, in 0.089s +[121/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[122/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[123/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[124/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[125/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[126/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[127/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[128/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[129/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[130/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[131/200] 1 tree, 9 leaves, max depth = 7, in 0.003s +[132/200] 1 tree, 10 leaves, max depth = 8, in 0.001s +[133/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[134/200] 1 tree, 7 leaves, max depth = 5, in 0.089s +[135/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[136/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[137/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[138/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[139/200] 1 tree, 8 leaves, max depth = 6, in 0.003s +[140/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[141/200] 1 tree, 7 leaves, max depth = 6, in 0.001s +[142/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[143/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[144/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[145/200] 1 tree, 8 leaves, max depth = 5, in 0.091s +[146/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[147/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[148/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[149/200] 1 tree, 7 leaves, max depth = 5, in 0.000s +[150/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[151/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[152/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[153/200] 1 tree, 9 leaves, max depth = 7, in 0.001s +[154/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[155/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[156/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[157/200] 1 tree, 9 leaves, max depth = 8, in 0.001s +[158/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[159/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[160/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[161/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[162/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[163/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[164/200] 1 tree, 9 leaves, max depth = 7, in 0.089s +[165/200] 1 tree, 8 leaves, max depth = 7, in 0.001s +[166/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[167/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[168/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[169/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[170/200] 1 tree, 8 leaves, max depth = 4, in 0.001s +[171/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[172/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[173/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[174/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[175/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[176/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[177/200] 1 tree, 7 leaves, max depth = 5, in 0.000s +[178/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[179/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[180/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[181/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[182/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[183/200] 1 tree, 8 leaves, max depth = 7, in 0.091s +[184/200] 1 tree, 7 leaves, max depth = 5, in 0.001s +[185/200] 1 tree, 9 leaves, max depth = 5, in 0.001s +[186/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[187/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[188/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[189/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[190/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[191/200] 1 tree, 9 leaves, max depth = 6, in 0.001s +[192/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[193/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +[194/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[195/200] 1 tree, 9 leaves, max depth = 5, in 0.002s +[196/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[197/200] 1 tree, 8 leaves, max depth = 5, in 0.089s +[198/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[199/200] 1 tree, 8 leaves, max depth = 5, in 0.001s +[200/200] 1 tree, 8 leaves, max depth = 6, in 0.001s +Fit 200 trees in 1.301 s, (1663 total leaves) +Time spent computing histograms: 0.586s +Time spent finding best splits: 0.009s +Time spent applying splits: 0.297s +Time spent predicting: 0.098s +________ test_early_stopping_classification[accuracy-0.1-5-1e-07-data0] ________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.001 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[2/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[3/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[4/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.001s +[5/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[6/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +Fit 6 trees in 0.004 s, (18 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +________ test_early_stopping_classification[accuracy-0.1-5-1e-07-data1] ________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train score: 1.00000, val score: 1.00000, in 0.089s +[2/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[3/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[4/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[5/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[6/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +Fit 18 trees in 0.096 s, (74 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +________ test_early_stopping_classification[accuracy-None-5-0.1-data0] _________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.001 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96667, in 0.000s +[2/50] 1 tree, 5 leaves, max depth = 3, train score: 0.96667, in 0.000s +[3/50] 1 tree, 5 leaves, max depth = 3, train score: 0.96667, in 0.000s +[4/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +[5/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +[6/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +Fit 6 trees in 0.003 s, (25 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +________ test_early_stopping_classification[accuracy-None-5-0.1-data1] _________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train score: 0.96667, in 0.089s +[2/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +[3/50] 3 trees, 14 leaves (4 on avg), max depth = 3, train score: 1.00000, in 0.001s +[4/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +[5/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +[6/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +Fit 18 trees in 0.094 s, (83 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.089s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[None-0.1-5-1e-07-data0] __________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[2/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[3/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[4/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[5/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.000s +[6/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96296, val score: 1.00000, in 0.001s +Fit 6 trees in 0.004 s, (18 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[None-0.1-5-1e-07-data1] __________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train score: 1.00000, val score: 1.00000, in 0.089s +[2/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[3/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[4/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[5/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +[6/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train score: 1.00000, val score: 1.00000, in 0.001s +Fit 18 trees in 0.095 s, (74 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[None-None-5-0.1-data0] ___________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train score: 0.96667, in 0.000s +[2/50] 1 tree, 5 leaves, max depth = 3, train score: 0.96667, in 0.000s +[3/50] 1 tree, 5 leaves, max depth = 3, train score: 0.96667, in 0.000s +[4/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +[5/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +[6/50] 1 tree, 4 leaves, max depth = 3, train score: 0.96667, in 0.000s +Fit 6 trees in 0.003 s, (25 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.000s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[None-None-5-0.1-data1] ___________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train score: 0.96667, in 0.001s +[2/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.089s +[3/50] 3 trees, 14 leaves (4 on avg), max depth = 3, train score: 1.00000, in 0.001s +[4/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +[5/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +[6/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train score: 1.00000, in 0.001s +Fit 18 trees in 0.094 s, (83 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[loss-0.1-5-1e-07-data0] __________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.60873, val loss: 0.60857, in 0.000s +[2/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.53978, val loss: 0.52797, in 0.000s +[3/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.48224, val loss: 0.47117, in 0.000s +[4/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.43351, val loss: 0.42283, in 0.000s +[5/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.39175, val loss: 0.37226, in 0.000s +[6/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.35583, val loss: 0.33742, in 0.000s +[7/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.32455, val loss: 0.29887, in 0.000s +[8/50] 1 tree, 4 leaves, max depth = 2, train loss: 0.29723, val loss: 0.26529, in 0.000s +[9/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.27320, val loss: 0.23590, in 0.000s +[10/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.25191, val loss: 0.22397, in 0.000s +[11/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.23298, val loss: 0.19983, in 0.000s +[12/50] 1 tree, 4 leaves, max depth = 2, train loss: 0.21610, val loss: 0.18537, in 0.000s +[13/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.20088, val loss: 0.16576, in 0.000s +[14/50] 1 tree, 4 leaves, max depth = 2, train loss: 0.18723, val loss: 0.15504, in 0.000s +[15/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.17483, val loss: 0.15129, in 0.000s +[16/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.16363, val loss: 0.13574, in 0.000s +[17/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.15335, val loss: 0.12864, in 0.000s +[18/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.14390, val loss: 0.12043, in 0.000s +[19/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.13529, val loss: 0.10824, in 0.000s +[20/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.12236, val loss: 0.11017, in 0.000s +[21/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.11078, val loss: 0.12778, in 0.000s +[22/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.10049, val loss: 0.11531, in 0.000s +[23/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.09123, val loss: 0.12352, in 0.000s +[24/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.08331, val loss: 0.11163, in 0.000s +Fit 24 trees in 0.006 s, (84 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[loss-0.1-5-1e-07-data1] __________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.087 s +Binning 0.000 GB of validation data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train loss: 0.86684, val loss: 0.88207, in 0.001s +[2/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.70290, val loss: 0.72087, in 0.001s +[3/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.57985, val loss: 0.59839, in 0.001s +[4/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.48409, val loss: 0.50236, in 0.001s +[5/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.40798, val loss: 0.42555, in 0.001s +[6/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.34656, val loss: 0.36307, in 0.001s +[7/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.29620, val loss: 0.31012, in 0.001s +[8/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.25455, val loss: 0.26822, in 0.001s +[9/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.21989, val loss: 0.23211, in 0.001s +[10/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.19067, val loss: 0.20302, in 0.001s +[11/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.16613, val loss: 0.17829, in 0.001s +[12/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.14515, val loss: 0.15687, in 0.001s +[13/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.12733, val loss: 0.13898, in 0.001s +[14/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.11197, val loss: 0.12335, in 0.001s +[15/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.09591, val loss: 0.11953, in 0.001s +[16/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.08190, val loss: 0.10992, in 0.001s +[17/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.07049, val loss: 0.10897, in 0.001s +[18/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.06211, val loss: 0.09210, in 0.089s +[19/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.05343, val loss: 0.09664, in 0.001s +[20/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.04610, val loss: 0.09373, in 0.001s +[21/50] 3 trees, 13 leaves (4 on avg), max depth = 4, train loss: 0.04035, val loss: 0.08539, in 0.001s +[22/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.03494, val loss: 0.08207, in 0.001s +[23/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.02985, val loss: 0.09083, in 0.001s +[24/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.02581, val loss: 0.09533, in 0.001s +[25/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.02265, val loss: 0.09196, in 0.001s +[26/50] 3 trees, 13 leaves (4 on avg), max depth = 4, train loss: 0.01946, val loss: 0.09869, in 0.001s +[27/50] 3 trees, 13 leaves (4 on avg), max depth = 3, train loss: 0.01687, val loss: 0.10491, in 0.001s +Fit 81 trees in 0.194 s, (347 total leaves) +Time spent computing histograms: 0.002s +Time spent finding best splits: 0.001s +Time spent applying splits: 0.004s +Time spent predicting: 0.001s +__________ test_early_stopping_classification[loss-None-5-0.1-data0] ___________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, train loss: 0.60827, in 0.000s +[2/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.53845, in 0.000s +[3/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.48010, in 0.000s +[4/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.43070, in 0.000s +[5/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.38844, in 0.000s +[6/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.35196, in 0.000s +[7/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.32025, in 0.091s +[8/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.29255, in 0.000s +[9/50] 1 tree, 5 leaves, max depth = 3, train loss: 0.26812, in 0.000s +[10/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.24655, in 0.000s +[11/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.22738, in 0.000s +[12/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.21019, in 0.000s +[13/50] 1 tree, 4 leaves, max depth = 3, train loss: 0.19474, in 0.000s +Fit 13 trees in 0.094 s, (54 total leaves) +Time spent computing histograms: 0.000s +Time spent finding best splits: 0.000s +Time spent applying splits: 0.001s +Time spent predicting: 0.000s +__________ test_early_stopping_classification[loss-None-5-0.1-data1] ___________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, train loss: 0.86534, in 0.001s +[2/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.69970, in 0.001s +[3/50] 3 trees, 14 leaves (4 on avg), max depth = 3, train loss: 0.57532, in 0.001s +[4/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.47824, in 0.001s +[5/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.40121, in 0.001s +[6/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.33889, in 0.001s +[7/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.28811, in 0.001s +[8/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.24613, in 0.001s +[9/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.21127, in 0.001s +[10/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.18188, in 0.001s +[11/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.15714, in 0.001s +[12/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.13606, in 0.001s +[13/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.11815, in 0.089s +[14/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.10278, in 0.001s +[15/50] 3 trees, 15 leaves (5 on avg), max depth = 3, train loss: 0.08963, in 0.001s +Fit 45 trees in 0.099 s, (218 total leaves) +Time spent computing histograms: 0.001s +Time spent finding best splits: 0.001s +Time spent applying splits: 0.090s +Time spent predicting: 0.000s +________ test_early_stopping_classification[None-None-None-None-data0] _________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.000 s +Fitting gradient boosted rounds: +[1/50] 1 tree, 3 leaves, max depth = 2, in 0.000s +[2/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[3/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[4/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[5/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[6/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[7/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[8/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[9/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[10/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[11/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[12/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[13/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[14/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[15/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[16/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[17/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[18/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[19/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[20/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[21/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[22/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[23/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[24/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[25/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[26/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[27/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[28/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[29/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[30/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[31/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[32/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[33/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[34/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[35/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[36/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[37/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[38/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[39/50] 1 tree, 5 leaves, max depth = 3, in 0.088s +[40/50] 1 tree, 5 leaves, max depth = 3, in 0.001s +[41/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[42/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[43/50] 1 tree, 4 leaves, max depth = 3, in 0.000s +[44/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[45/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[46/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[47/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[48/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[49/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +[50/50] 1 tree, 5 leaves, max depth = 3, in 0.000s +Fit 50 trees in 0.100 s, (231 total leaves) +Time spent computing histograms: 0.002s +Time spent finding best splits: 0.001s +Time spent applying splits: 0.003s +Time spent predicting: 0.000s +________ test_early_stopping_classification[None-None-None-None-data1] _________ +----------------------------- Captured stdout call ----------------------------- +Binning 0.000 GB of training data: 0.001 s +Fitting gradient boosted rounds: +[1/50] 3 trees, 9 leaves (3 on avg), max depth = 2, in 0.000s +[2/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[3/50] 3 trees, 14 leaves (4 on avg), max depth = 3, in 0.001s +[4/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[5/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[6/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[7/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[8/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[9/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[10/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[11/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.090s +[12/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[13/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[14/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[15/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[16/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[17/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[18/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[19/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[20/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[21/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[22/50] 3 trees, 16 leaves (5 on avg), max depth = 4, in 0.093s +[23/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[24/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[25/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[26/50] 3 trees, 16 leaves (5 on avg), max depth = 4, in 0.001s +[27/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[28/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[29/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[30/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[31/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[32/50] 3 trees, 16 leaves (5 on avg), max depth = 4, in 0.001s +[33/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[34/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[35/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[36/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[37/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[38/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[39/50] 3 trees, 16 leaves (5 on avg), max depth = 4, in 0.001s +[40/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.089s +[41/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[42/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[43/50] 3 trees, 14 leaves (4 on avg), max depth = 3, in 0.001s +[44/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[45/50] 3 trees, 14 leaves (4 on avg), max depth = 3, in 0.001s +[46/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[47/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[48/50] 3 trees, 14 leaves (4 on avg), max depth = 3, in 0.001s +[49/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +[50/50] 3 trees, 15 leaves (5 on avg), max depth = 3, in 0.001s +Fit 150 trees in 0.302 s, (744 total leaves) +Time spent computing histograms: 0.005s +Time spent finding best splits: 0.002s +Time spent applying splits: 0.098s +Time spent predicting: 0.002s +=========================== short test summary info ============================ +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params0-Loss blah is not supported for-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params0-Loss blah is not supported for-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params1-learning_rate=0 must be strictly positive-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params1-learning_rate=0 must be strictly positive-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params2-learning_rate=-1 must be strictly positive-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params2-learning_rate=-1 must be strictly positive-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params3-max_iter=0 must not be smaller than 1-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params3-max_iter=0 must not be smaller than 1-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params4-max_leaf_nodes=0 should not be smaller than 2-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params4-max_leaf_nodes=0 should not be smaller than 2-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params5-max_leaf_nodes=1 should not be smaller than 2-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params5-max_leaf_nodes=1 should not be smaller than 2-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params6-max_depth=0 should not be smaller than 2-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params6-max_depth=0 should not be smaller than 2-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params7-max_depth=1 should not be smaller than 2-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params7-max_depth=1 should not be smaller than 2-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params8-min_samples_leaf=0 should not be smaller-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params8-min_samples_leaf=0 should not be smaller-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params9-l2_regularization=-1 must be positive-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params9-l2_regularization=-1 must be positive-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params10-max_bins=1 should be no smaller than 2 and no larger-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params10-max_bins=1 should be no smaller than 2 and no larger-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params11-max_bins=256 should be no smaller than 2 and no-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params11-max_bins=256 should be no smaller than 2 and no-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params12-n_iter_no_change=-1 must be positive-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params12-n_iter_no_change=-1 must be positive-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params13-validation_fraction=-1 must be strictly-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params13-validation_fraction=-1 must be strictly-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params14-validation_fraction=0 must be strictly-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params14-validation_fraction=0 must be strictly-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params15-tol=-1 must not be smaller than 0-HistGradientBoostingClassifier-X0-y0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_init_parameters_validation[params15-tol=-1 must not be smaller than 0-HistGradientBoostingRegressor-X1-y1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_invalid_classification_loss +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[neg_mean_squared_error-0.1-5-1e-07] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[neg_mean_squared_error-None-5-0.1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[None-0.1-5-1e-07] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[None-None-5-0.1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[loss-0.1-5-1e-07] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[loss-None-5-0.1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_regression[None-None-None-None] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[accuracy-0.1-5-1e-07-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[accuracy-0.1-5-1e-07-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[accuracy-None-5-0.1-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[accuracy-None-5-0.1-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-0.1-5-1e-07-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-0.1-5-1e-07-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-None-5-0.1-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-None-5-0.1-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[loss-0.1-5-1e-07-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[loss-0.1-5-1e-07-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[loss-None-5-0.1-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[loss-None-5-0.1-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-None-None-None-data0] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_early_stopping_classification[None-None-None-None-data1] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores0-1-0.001-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores1-5-0.001-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores2-5-0.001-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores3-5-0.001-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores4-5-0.0-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores5-5-0.999-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores6-5-4.99999-False] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores7-5-0.0-True] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores8-5-0.001-True] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_should_stop[scores9-5-5-True] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_binning_train_validation_are_separated +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_trivial +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.1-0.97-0.89-classification] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.1-0.97-0.89-regression] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.2-0.93-0.81-classification] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.2-0.93-0.81-regression] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.5-0.79-0.52-classification] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_resilience[0.5-0.79-0.52-regression] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_zero_division_hessians[binary_crossentropy] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_zero_division_hessians[categorical_crossentropy] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_small_trainset +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_missing_values_minmax_imputation +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_infinite_values +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_infinite_values_missing_values +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_string_target_early_stopping[None] +PASSED sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py::test_string_target_early_stopping[loss] +================== 80 passed, 1 warning in 105.24s (0:01:45) =================== ++ : '>>>>> End Test Output' ++ git checkout 4b6273b87442a4437d8b3873ea3022ae163f4fdf sklearn/ensemble/_hist_gradient_boosting/tests/test_gradient_boosting.py +Updated 1 path from cbf59bc25 diff --git a/verify_logs/scikit-learn__scikit-learn-14894_log.txt b/verify_logs/scikit-learn__scikit-learn-14894_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..a6f35545d51080a2f234a618f4599464bdd5c035 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14894_log.txt @@ -0,0 +1,604 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/svm/base.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 394018239076a12a7ec168d58a353c88aeaf746e +Author: SWE-bench +Date: Wed Sep 10 15:43:06 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff fdbaa58acbead5a254f2e6d597dc1ab3b947f4c6 +diff --git a/sklearn/svm/base.py b/sklearn/svm/base.py +index 64cebe837..05027ee04 100644 +--- a/sklearn/svm/base.py ++++ b/sklearn/svm/base.py +@@ -286,9 +286,14 @@ class BaseLibSVM(BaseEstimator, metaclass=ABCMeta): + n_class = 1 + n_SV = self.support_vectors_.shape[0] + +- dual_coef_indices = np.tile(np.arange(n_SV), n_class) +- dual_coef_indptr = np.arange(0, dual_coef_indices.size + 1, +- dual_coef_indices.size / n_class) ++ if n_SV == 0: ++ # Handle the case when there are no support vectors. ++ dual_coef_indices = np.array([], dtype=np.intp) ++ dual_coef_indptr = np.zeros(n_class + 1, dtype=np.intp) ++ else: ++ dual_coef_indices = np.tile(np.arange(n_SV), n_class) ++ dual_coef_indptr = np.arange(0, dual_coef_indices.size + 1, ++ dual_coef_indices.size / n_class) + self.dual_coef_ = sp.csr_matrix( + (dual_coef_data, dual_coef_indices, dual_coef_indptr), + (n_class, n_SV)) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-ltcx3dgt/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.common" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 48%] +............................................ [100%] + +==================================== PASSES ==================================== +____ test_negative_sample_weights_mask_all_samples[weights-are-zero-NuSVC] _____ +----------------------------- Captured stderr call ----------------------------- +warning: class label 0 specified in weight is not found +warning: class label 1 specified in weight is not found +____________________________ test_linearsvc_verbose ____________________________ +----------------------------- Captured stdout call ----------------------------- +[LibLinear] +=========================== short test summary info ============================ +PASSED sklearn/svm/tests/test_svm.py::test_libsvm_parameters +PASSED sklearn/svm/tests/test_svm.py::test_libsvm_iris +PASSED sklearn/svm/tests/test_svm.py::test_precomputed +PASSED sklearn/svm/tests/test_svm.py::test_svr +PASSED sklearn/svm/tests/test_svm.py::test_linearsvr +PASSED sklearn/svm/tests/test_svm.py::test_linearsvr_fit_sampleweight +PASSED sklearn/svm/tests/test_svm.py::test_svr_errors +PASSED sklearn/svm/tests/test_svm.py::test_oneclass +PASSED sklearn/svm/tests/test_svm.py::test_oneclass_decision_function +PASSED sklearn/svm/tests/test_svm.py::test_oneclass_score_samples +PASSED sklearn/svm/tests/test_svm.py::test_tweak_params +PASSED sklearn/svm/tests/test_svm.py::test_probability +PASSED sklearn/svm/tests/test_svm.py::test_decision_function +PASSED sklearn/svm/tests/test_svm.py::test_decision_function_shape +PASSED sklearn/svm/tests/test_svm.py::test_svr_predict +PASSED sklearn/svm/tests/test_svm.py::test_weight +PASSED sklearn/svm/tests/test_svm.py::test_svm_classifier_sided_sample_weight[estimator0] +PASSED sklearn/svm/tests/test_svm.py::test_svm_classifier_sided_sample_weight[estimator1] +PASSED sklearn/svm/tests/test_svm.py::test_svm_regressor_sided_sample_weight[estimator0] +PASSED sklearn/svm/tests/test_svm.py::test_svm_regressor_sided_sample_weight[estimator1] +PASSED sklearn/svm/tests/test_svm.py::test_svm_equivalence_sample_weight_C +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-zero-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-zero-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-zero-SVR] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-zero-NuSVR] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-zero-OneClassSVM] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-negative-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-negative-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-negative-SVR] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-negative-NuSVR] +PASSED sklearn/svm/tests/test_svm.py::test_negative_sample_weights_mask_all_samples[weights-are-negative-OneClassSVM] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_just_one_label[mask-label-1-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_just_one_label[mask-label-1-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_just_one_label[mask-label-2-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_just_one_label[mask-label-2-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_two_labels[partial-mask-label-1-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_two_labels[partial-mask-label-1-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_two_labels[partial-mask-label-2-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weights_svc_leave_two_labels[partial-mask-label-2-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-1-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-1-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-1-NuSVR] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-2-SVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-2-NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_negative_weight_equal_coeffs[partial-mask-label-2-NuSVR] +PASSED sklearn/svm/tests/test_svm.py::test_auto_weight +PASSED sklearn/svm/tests/test_svm.py::test_bad_input +PASSED sklearn/svm/tests/test_svm.py::test_svm_gamma_error[SVC-data0] +PASSED sklearn/svm/tests/test_svm.py::test_svm_gamma_error[NuSVC-data1] +PASSED sklearn/svm/tests/test_svm.py::test_svm_gamma_error[SVR-data2] +PASSED sklearn/svm/tests/test_svm.py::test_svm_gamma_error[NuSVR-data3] +PASSED sklearn/svm/tests/test_svm.py::test_svm_gamma_error[OneClassSVM-data4] +PASSED sklearn/svm/tests/test_svm.py::test_unicode_kernel +PASSED sklearn/svm/tests/test_svm.py::test_sparse_precomputed +PASSED sklearn/svm/tests/test_svm.py::test_sparse_fit_support_vectors_empty +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc_parameters +PASSED sklearn/svm/tests/test_svm.py::test_linearsvx_loss_penalty_deprecations +PASSED sklearn/svm/tests/test_svm.py::test_linear_svx_uppercase_loss_penality_raises_error +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc_crammer_singer +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc_fit_sampleweight +PASSED sklearn/svm/tests/test_svm.py::test_crammer_singer_binary +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc_iris +PASSED sklearn/svm/tests/test_svm.py::test_dense_liblinear_intercept_handling +PASSED sklearn/svm/tests/test_svm.py::test_liblinear_set_coef +PASSED sklearn/svm/tests/test_svm.py::test_immutable_coef_property +PASSED sklearn/svm/tests/test_svm.py::test_linearsvc_verbose +PASSED sklearn/svm/tests/test_svm.py::test_svc_clone_with_callable_kernel +PASSED sklearn/svm/tests/test_svm.py::test_svc_bad_kernel +PASSED sklearn/svm/tests/test_svm.py::test_timeout +PASSED sklearn/svm/tests/test_svm.py::test_unfitted +PASSED sklearn/svm/tests/test_svm.py::test_consistent_proba +PASSED sklearn/svm/tests/test_svm.py::test_linear_svm_convergence_warnings +PASSED sklearn/svm/tests/test_svm.py::test_svr_coef_sign +PASSED sklearn/svm/tests/test_svm.py::test_linear_svc_intercept_scaling +PASSED sklearn/svm/tests/test_svm.py::test_lsvc_intercept_scaling_zero +PASSED sklearn/svm/tests/test_svm.py::test_hasattr_predict_proba +PASSED sklearn/svm/tests/test_svm.py::test_decision_function_shape_two_class +PASSED sklearn/svm/tests/test_svm.py::test_ovr_decision_function +PASSED sklearn/svm/tests/test_svm.py::test_svc_invalid_break_ties_param[SVC] +PASSED sklearn/svm/tests/test_svm.py::test_svc_invalid_break_ties_param[NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_svc_ovr_tie_breaking[SVC] +PASSED sklearn/svm/tests/test_svm.py::test_svc_ovr_tie_breaking[NuSVC] +PASSED sklearn/svm/tests/test_svm.py::test_gamma_auto +PASSED sklearn/svm/tests/test_svm.py::test_gamma_scale +PASSED sklearn/svm/tests/test_svm.py::test_n_support_oneclass_svr +======================= 86 passed, 13 warnings in 2.59s ======================== ++ : '>>>>> End Test Output' ++ git checkout fdbaa58acbead5a254f2e6d597dc1ab3b947f4c6 sklearn/svm/tests/test_svm.py +Updated 1 path from be8c6bbbb diff --git a/verify_logs/scikit-learn__scikit-learn-14983_log.txt b/verify_logs/scikit-learn__scikit-learn-14983_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..e8e9ad19d263503b5d2e591b0b0096c4e1a9d136 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-14983_log.txt @@ -0,0 +1,635 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/model_selection/_split.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit a60ff6c067ade8b02e18181c14fd5f3d06cb0168 +Author: SWE-bench +Date: Wed Sep 10 15:42:57 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 06632c0d185128a53c57ccc73b25b6408e90bb89 +diff --git a/sklearn/model_selection/_split.py b/sklearn/model_selection/_split.py +index c49a3ce6a..d7546b20d 100644 +--- a/sklearn/model_selection/_split.py ++++ b/sklearn/model_selection/_split.py +@@ -1163,6 +1163,33 @@ class _RepeatedSplits(metaclass=ABCMeta): + **self.cvargs) + return cv.get_n_splits(X, y, groups) * self.n_repeats + ++ def __repr__(self): ++ # XXX This is similar to _build_repr but handles cvargs ++ cls = self.__class__ ++ init = getattr(cls.__init__, 'deprecated_original', cls.__init__) ++ init_signature = signature(init) ++ args = sorted([p.name for p in init_signature.parameters.values() ++ if p.name != 'self' and p.kind != p.VAR_KEYWORD]) ++ class_name = self.__class__.__name__ ++ params = dict() ++ for key in args: ++ warnings.simplefilter("always", DeprecationWarning) ++ try: ++ with warnings.catch_warnings(record=True) as w: ++ # Try to get the value from the instance first ++ if hasattr(self, key): ++ value = getattr(self, key) ++ else: ++ # If the attribute does not exist, try to get from cvargs ++ value = self.cvargs.get(key, None) ++ if len(w) and w[0].category == DeprecationWarning: ++ continue ++ finally: ++ warnings.filters.pop(0) ++ params[key] = value ++ ++ return '%s(%s)' % (class_name, _pprint(params, offset=len(class_name))) ++ + + class RepeatedKFold(_RepeatedSplits): + """Repeated K-Fold cross validator. ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-a6eleu_d/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.common" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 26%] +........................................................................ [ 93%] +....... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/model_selection/tests/test_split.py::test_cross_validator_with_default_params +PASSED sklearn/model_selection/tests/test_split.py::test_2d_y +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_valueerrors +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_indices +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_no_shuffle +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_no_shuffle +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[4-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[4-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[5-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[5-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[6-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[6-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[7-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[7-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[8-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[8-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[9-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[9-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[10-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_ratios[10-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[4-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[4-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[6-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[6-True] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[7-False] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_kfold_label_invariance[7-True] +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_balance +PASSED sklearn/model_selection/tests/test_split.py::test_stratifiedkfold_balance +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_kfold_stratifiedkfold_reproducibility +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_stratifiedkfold +PASSED sklearn/model_selection/tests/test_split.py::test_kfold_can_detect_dependent_samples_on_digits +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[None-9-1-ShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[None-9-1-StratifiedShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[8-8-2-ShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[8-8-2-StratifiedShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[0.8-8-2-ShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_default_test_size[0.8-8-2-StratifiedShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_group_shuffle_split_default_test_size[None-8-2] +PASSED sklearn/model_selection/tests/test_split.py::test_group_shuffle_split_default_test_size[7-7-3] +PASSED sklearn/model_selection/tests/test_split.py::test_group_shuffle_split_default_test_size[0.7-7-3] +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_init +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_respects_test_size +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_iter +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_even +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_overlap_train_test_bug +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_multilabel +PASSED sklearn/model_selection/tests/test_split.py::test_stratified_shuffle_split_multilabel_many_labels +PASSED sklearn/model_selection/tests/test_split.py::test_predefinedsplit_with_kfold_split +PASSED sklearn/model_selection/tests/test_split.py::test_group_shuffle_split +PASSED sklearn/model_selection/tests/test_split.py::test_leave_one_p_group_out +PASSED sklearn/model_selection/tests/test_split.py::test_leave_group_out_changing_groups +PASSED sklearn/model_selection/tests/test_split.py::test_leave_one_p_group_out_error_on_fewer_number_of_groups +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_cv_value_errors +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_cv_repr[RepeatedKFold] +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_cv_repr[RepeatedStratifiedKFold] +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_kfold_determinstic_split +PASSED sklearn/model_selection/tests/test_split.py::test_get_n_splits_for_repeated_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_get_n_splits_for_repeated_stratified_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_repeated_stratified_kfold_determinstic_split +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_errors +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[1.2-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[1.0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[-0.2-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-1.2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-1.0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8-0.0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes1[0.8--0.2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[-10-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[11-0.8] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8--10] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8-0] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_invalid_sizes2[0.8-11] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_default_test_size[None-7-3] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_default_test_size[8-8-2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_default_test_size[0.8-8-2] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_pandas +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_sparse +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_mock_pandas +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_list_input +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[2.0-None] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[1.0-None] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[0.1-0.95] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[None-train_size3] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[11-None] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[10-None] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_errors[8-3] +PASSED sklearn/model_selection/tests/test_split.py::test_shufflesplit_reproducible +PASSED sklearn/model_selection/tests/test_split.py::test_stratifiedshufflesplit_list_input +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_allow_nans +PASSED sklearn/model_selection/tests/test_split.py::test_check_cv +PASSED sklearn/model_selection/tests/test_split.py::test_cv_iterable_wrapper +PASSED sklearn/model_selection/tests/test_split.py::test_group_kfold +PASSED sklearn/model_selection/tests/test_split.py::test_time_series_cv +PASSED sklearn/model_selection/tests/test_split.py::test_time_series_max_train_size +PASSED sklearn/model_selection/tests/test_split.py::test_nested_cv +PASSED sklearn/model_selection/tests/test_split.py::test_build_repr +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_empty_trainset[ShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_empty_trainset[GroupShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_shuffle_split_empty_trainset[StratifiedShuffleSplit] +PASSED sklearn/model_selection/tests/test_split.py::test_train_test_split_empty_trainset +PASSED sklearn/model_selection/tests/test_split.py::test_leave_one_out_empty_trainset +PASSED sklearn/model_selection/tests/test_split.py::test_leave_p_out_empty_trainset +====================== 107 passed, 122 warnings in 1.12s ======================= ++ : '>>>>> End Test Output' ++ git checkout 06632c0d185128a53c57ccc73b25b6408e90bb89 sklearn/model_selection/tests/test_split.py +Updated 1 path from 64a00e918 diff --git a/verify_logs/scikit-learn__scikit-learn-15100_log.txt b/verify_logs/scikit-learn__scikit-learn-15100_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..e0a168698630fa4f61160ff58ab1c7ba0fdf4e43 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-15100_log.txt @@ -0,0 +1,621 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/feature_extraction/text.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 50141f50d7ab7918549788f0f9834825fcc2d014 +Author: SWE-bench +Date: Wed Sep 10 15:43:34 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff af8a6e592a1a15d92d77011856d5aa0ec4db4c6c +diff --git a/sklearn/feature_extraction/text.py b/sklearn/feature_extraction/text.py +index bb5a9d646..11236d958 100644 +--- a/sklearn/feature_extraction/text.py ++++ b/sklearn/feature_extraction/text.py +@@ -130,10 +130,7 @@ def strip_accents_unicode(s): + ASCII equivalent. + """ + normalized = unicodedata.normalize('NFKD', s) +- if normalized == s: +- return s +- else: +- return ''.join([c for c in normalized if not unicodedata.combining(c)]) ++ return ''.join([c for c in normalized if not unicodedata.combining(c)]) + + + def strip_accents_ascii(s): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-pvaplr4g/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.common" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/9f/8b/a094f5da22d7abf5098205367b3296dd15b914f4232af5ca39ba6214d08c/pip-22.0-py3-none-any.whl#sha256=6cb1ea2bd7fda0668e26ae8c3e45188f301a7ef17ff22efe1f70f3643e56a822 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/4a/ca/e72b3b399d7a8cb34311aa8f52924108591c013b09f0268820afb4cd96fb/pip-22.0.tar.gz#sha256=d3fa5c3e42b33de52bddce89de40268c9a263cd6ef7c94c40774808dafb32c82 (from https://pypi.org/simple/pip/) (requires-python:>=3.7) + Link requires a different Python (3.6.13 not in: '>=3.7'): https://files.pythonhosted.org/packages/89/a1/2f4e58eda11e591fbfa518233378835679fc5ab766b690b3df85215014d5/pip-22.0.1-py3-none-any.whl#sha256=30739ac5fb973cfa4399b0afff0523d4fe6bed2f7a5229333f64d9c2ce0d1933 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[ 23%] +......................................x.........x..x..............x..... [ 88%] +............. 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sklearn/feature_extraction/tests/test_text.py::test_tfidfvectorizer_export_idf +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_vocab_clone +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_string_object_as_input[CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_string_object_as_input[TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_string_object_as_input[HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_transformer_type[float32] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_transformer_type[float64] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_transformer_sparse +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_vectorizer_type[int32-float64-True] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_vectorizer_type[int64-float64-True] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_vectorizer_type[float32-float32-False] +PASSED sklearn/feature_extraction/tests/test_text.py::test_tfidf_vectorizer_type[float64-float64-False] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec1] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec2] +PASSED sklearn/feature_extraction/tests/test_text.py::test_vectorizer_stop_words_inconsistent +PASSED sklearn/feature_extraction/tests/test_text.py::test_countvectorizer_sort_features_64bit_sparse_indices +PASSED sklearn/feature_extraction/tests/test_text.py::test_stop_word_validation_custom_preprocessor[CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_stop_word_validation_custom_preprocessor[TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_stop_word_validation_custom_preprocessor[HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[filename-FileNotFoundError--CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[filename-FileNotFoundError--TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[file-AttributeError-'str' object has no attribute 'read'-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[file-AttributeError-'str' object has no attribute 'read'-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-0-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-0-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-0-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-1-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-1-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[file-1-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-0-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-0-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-0-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-1-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-1-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_change_behavior[filename-1-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_reraise_error[CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_reraise_error[TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[stop_words0-None-None-ngram_range0-None-char-'stop_words'-'analyzer'-!= 'word'-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[stop_words0-None-None-ngram_range0-None-char-'stop_words'-'analyzer'-!= 'word'-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[stop_words0-None-None-ngram_range0-None-char-'stop_words'-'analyzer'-!= 'word'-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range1-None-char-'tokenizer'-'analyzer'-!= 'word'-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range1-None-char-'tokenizer'-'analyzer'-!= 'word'-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range1-None-char-'tokenizer'-'analyzer'-!= 'word'-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range2-\\w+-word-'token_pattern'-'tokenizer'-is not None-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range2-\\w+-word-'token_pattern'-'tokenizer'-is not None-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None--None-ngram_range2-\\w+-word-'token_pattern'-'tokenizer'-is not None-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None--ngram_range3-\\w+--'preprocessor'-'analyzer'-is callable-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None--ngram_range3-\\w+--'preprocessor'-'analyzer'-is callable-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None--ngram_range3-\\w+--'preprocessor'-'analyzer'-is callable-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range4-None--'ngram_range'-'analyzer'-is callable-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range4-None--'ngram_range'-'analyzer'-is callable-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range4-None--'ngram_range'-'analyzer'-is callable-TfidfVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range5-\\w+-char-'token_pattern'-'analyzer'-!= 'word'-CountVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range5-\\w+-char-'token_pattern'-'analyzer'-!= 'word'-HashingVectorizer] +PASSED sklearn/feature_extraction/tests/test_text.py::test_unused_parameters_warn[None-None-None-ngram_range5-\\w+-char-'token_pattern'-'analyzer'-!= 'word'-TfidfVectorizer] +XFAIL sklearn/feature_extraction/tests/test_text.py::test_vectorizers_invalid_ngram_range[vec0] + reason: HashingVectorizer is not supported on PyPy +XFAIL sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[filename-FileNotFoundError--HashingVectorizer] + reason: HashingVectorizer is not supported on PyPy +XFAIL sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_error[file-AttributeError-'str' object has no attribute 'read'-HashingVectorizer] + reason: HashingVectorizer is not supported on PyPy +XFAIL sklearn/feature_extraction/tests/test_text.py::test_callable_analyzer_reraise_error[HashingVectorizer] + reason: HashingVectorizer is not supported on PyPy +================== 107 passed, 4 xfailed, 5 warnings in 1.65s ================== ++ : '>>>>> End Test Output' ++ git checkout af8a6e592a1a15d92d77011856d5aa0ec4db4c6c sklearn/feature_extraction/tests/test_text.py +Updated 1 path from 401f293ad diff --git a/verify_logs/scikit-learn__scikit-learn-25102_log.txt b/verify_logs/scikit-learn__scikit-learn-25102_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..b0b31a9e54d8627e2a667f9388e1b8115537acd5 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-25102_log.txt @@ -0,0 +1,1152 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +nothing to commit, working tree clean ++ git show +commit deb7ba995e8c86567ee030f23e7ec30ac6703dfa +Author: SWE-bench +Date: Wed Sep 10 15:49:49 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff f9a1cf072da9d7375d6c2163f68a6038b13b310f ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-gst26z8m/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.3.2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Using newest NumPy C API for extension sklearn.__check_build._check_build + Using newest NumPy C API for extension sklearn._isotonic + Using newest NumPy C API for extension sklearn._loss._loss + Using newest NumPy C API for extension sklearn.cluster._dbscan_inner + Using newest NumPy C API for extension sklearn.cluster._hierarchical_fast + Using newest NumPy C API for extension sklearn.cluster._k_means_common + Using newest NumPy C API for extension sklearn.cluster._k_means_lloyd + Using newest NumPy C API for extension sklearn.cluster._k_means_elkan + Using newest NumPy C API for extension sklearn.cluster._k_means_minibatch + Using newest NumPy C API for extension sklearn.datasets._svmlight_format_fast + Using newest NumPy C API for extension sklearn.decomposition._online_lda_fast + Using newest NumPy C API for extension sklearn.decomposition._cdnmf_fast + Using newest NumPy C API for extension sklearn.ensemble._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.histogram + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.splitting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._binning + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._predictor + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._bitset + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.common + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.utils + Using newest NumPy C API for extension sklearn.feature_extraction._hashing_fast + Using old NumPy C API (version 1.7) for extension sklearn.linear_model._cd_fast + Using newest NumPy C API for extension sklearn.linear_model._sgd_fast + Using newest NumPy C API for extension sklearn.linear_model._sag_fast + Using newest NumPy C API for extension sklearn.manifold._utils + Using newest NumPy C API for extension sklearn.manifold._barnes_hut_tsne + Using newest NumPy C API for extension sklearn.metrics._pairwise_fast + Using old NumPy C API (version 1.7) for extension sklearn.metrics._dist_metrics + Using newest NumPy C API for extension sklearn.metrics.cluster._expected_mutual_info_fast + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._datasets_pair + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._middle_term_computer + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._base + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._argkmin + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._radius_neighbors + Using newest NumPy C API for extension sklearn.preprocessing._csr_polynomial_expansion + Using newest NumPy C API for extension sklearn.neighbors._ball_tree + Using newest NumPy C API for extension sklearn.neighbors._kd_tree + Using newest NumPy C API for extension sklearn.neighbors._partition_nodes + Using newest NumPy C API for extension sklearn.neighbors._quad_tree + Using newest NumPy C API for extension sklearn.svm._newrand + Using newest NumPy C API for extension sklearn.svm._libsvm + Using newest NumPy C API for extension sklearn.svm._liblinear + Using newest NumPy C API for extension sklearn.svm._libsvm_sparse + Using newest NumPy C API for extension sklearn.tree._tree + Using newest NumPy C API for extension sklearn.tree._splitter + Using old NumPy C API (version 1.7) for extension sklearn.tree._criterion + Using newest NumPy C API for extension sklearn.tree._utils + Using old NumPy C API (version 1.7) for extension sklearn.utils.sparsefuncs_fast + Using newest NumPy C API for extension sklearn.utils._cython_blas + Using old NumPy C API (version 1.7) for extension sklearn.utils.arrayfuncs + Using newest NumPy C API for extension sklearn.utils.murmurhash + Using newest NumPy C API for extension sklearn.utils._fast_dict + Using newest NumPy C API for extension sklearn.utils._openmp_helpers + Using newest NumPy C API for extension sklearn.utils._seq_dataset + Using newest NumPy C API for extension sklearn.utils._weight_vector + Using newest NumPy C API for extension sklearn.utils._random + Using newest NumPy C API for extension sklearn.utils._logistic_sigmoid + Using newest NumPy C API for extension sklearn.utils._readonly_array_wrapper + Using newest NumPy C API for extension sklearn.utils._typedefs + Using newest NumPy C API for extension sklearn.utils._heap + Using newest NumPy C API for extension sklearn.utils._sorting + Using newest NumPy C API for extension sklearn.utils._vector_sentinel + Using newest NumPy C API for extension sklearn.utils._isfinite + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout f9a1cf072da9d7375d6c2163f68a6038b13b310f sklearn/feature_selection/tests/test_base.py sklearn/feature_selection/tests/test_feature_select.py +Updated 0 paths from 6fbeab64d ++ git apply -v - +Checking patch sklearn/feature_selection/tests/test_base.py... +Checking patch sklearn/feature_selection/tests/test_feature_select.py... +Applied patch sklearn/feature_selection/tests/test_base.py cleanly. +Applied patch sklearn/feature_selection/tests/test_feature_select.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/feature_selection/tests/test_base.py sklearn/feature_selection/tests/test_feature_select.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 61 items + +sklearn/feature_selection/tests/test_base.py .....F [ 9%] +sklearn/feature_selection/tests/test_feature_select.py ................. [ 37%] +.....................................F [100%] + +=================================== FAILURES =================================== +____________________________ test_output_dataframe _____________________________ + + def test_output_dataframe(): + """Check output dtypes for dataframes is consistent with the input dtypes.""" + pd = pytest.importorskip("pandas") + + X = pd.DataFrame( + { + "a": pd.Series([1.0, 2.4, 4.5], dtype=np.float32), + "b": pd.Series(["a", "b", "a"], dtype="category"), + "c": pd.Series(["j", "b", "b"], dtype="category"), + "d": pd.Series([3.0, 2.4, 1.2], dtype=np.float64), + } + ) + + for step in [2, 3]: + sel = StepSelector(step=step).set_output(transform="pandas") + sel.fit(X) + + output = sel.transform(X) + for name, dtype in output.dtypes.items(): +> assert dtype == X.dtypes[name] +E AssertionError: assert dtype('O') == dtype('float32') + +sklearn/feature_selection/tests/test_base.py:140: AssertionError +_________________________ test_dataframe_output_dtypes _________________________ + + def test_dataframe_output_dtypes(): + """Check that the output datafarme dtypes are the same as the input. + + Non-regression test for gh-24860. + """ + pd = pytest.importorskip("pandas") + + X, y = load_iris(return_X_y=True, as_frame=True) + X = X.astype( + { + "petal length (cm)": np.float32, + "petal width (cm)": np.float64, + } + ) + X["petal_width_binned"] = pd.cut(X["petal width (cm)"], bins=10) + + column_order = X.columns + + def selector(X, y): + ranking = { + "sepal length (cm)": 1, + "sepal width (cm)": 2, + "petal length (cm)": 3, + "petal width (cm)": 4, + "petal_width_binned": 5, + } + return np.asarray([ranking[name] for name in column_order]) + + univariate_filter = SelectKBest(selector, k=3).set_output(transform="pandas") + output = univariate_filter.fit_transform(X, y) + + assert_array_equal( + output.columns, ["petal length (cm)", "petal width (cm)", "petal_width_binned"] + ) + for name, dtype in output.dtypes.items(): +> assert dtype == X.dtypes[name] +E AssertionError: assert dtype('O') == dtype('float32') + +sklearn/feature_selection/tests/test_feature_select.py:984: AssertionError +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/feature_selection/tests/test_base.py::test_transform_dense +PASSED sklearn/feature_selection/tests/test_base.py::test_transform_sparse +PASSED sklearn/feature_selection/tests/test_base.py::test_inverse_transform_dense +PASSED sklearn/feature_selection/tests/test_base.py::test_inverse_transform_sparse +PASSED sklearn/feature_selection/tests/test_base.py::test_get_support +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_oneway_vs_scipy_stats +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_oneway_ints +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_classif +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression[True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression[False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_input_dtype +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_center +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression_force_finite[X0-y0-expected_corr_coef0-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression_force_finite[X1-y1-expected_corr_coef1-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression_force_finite[X2-y2-expected_corr_coef2-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_r_regression_force_finite[X3-y3-expected_corr_coef3-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X0-y0-expected_f_statistic0-expected_p_values0-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X1-y1-expected_f_statistic1-expected_p_values1-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X2-y2-expected_f_statistic2-expected_p_values2-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X3-y3-expected_f_statistic3-expected_p_values3-True] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X4-y4-expected_f_statistic4-expected_p_values4-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X5-y5-expected_f_statistic5-expected_p_values5-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X6-y6-expected_f_statistic6-expected_p_values6-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_regression_corner_case[X7-y7-expected_f_statistic7-expected_p_values7-False] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_classif_multi_class +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_percentile_classif +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_percentile_classif_sparse +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_kbest_classif +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_kbest_all +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_kbest_zero[float32] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_kbest_zero[float64] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_heuristics_classif +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_percentile_regression +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_percentile_regression_full +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_kbest_regression +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_heuristics_regression +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_boundary_case_ch2 +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[1-0.001] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[1-0.01] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[1-0.1] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[5-0.001] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[5-0.01] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[5-0.1] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[10-0.001] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[10-0.01] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fdr_regression[10-0.1] +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_select_fwe_regression +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_selectkbest_tiebreaking +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_selectpercentile_tiebreaking +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_tied_pvalues +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_scorefunc_multilabel +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_tied_scores +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_nans +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_invalid_k +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_f_classif_constant_feature +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_no_feature_selected +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_mutual_info_classif +PASSED sklearn/feature_selection/tests/test_feature_select.py::test_mutual_info_regression +FAILED sklearn/feature_selection/tests/test_base.py::test_output_dataframe - AssertionError: assert dtype('O') == dtype('float32') +FAILED sklearn/feature_selection/tests/test_feature_select.py::test_dataframe_output_dtypes - AssertionError: assert dtype('O') == dtype('float32') +================== 2 failed, 59 passed, 56 warnings in 1.96s =================== ++ : '>>>>> End Test Output' ++ git checkout f9a1cf072da9d7375d6c2163f68a6038b13b310f sklearn/feature_selection/tests/test_base.py sklearn/feature_selection/tests/test_feature_select.py +Updated 2 paths from 6fbeab64d diff --git a/verify_logs/scikit-learn__scikit-learn-25232_log.txt b/verify_logs/scikit-learn__scikit-learn-25232_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..af1988d33a90961399a11ad441597f6bb380b366 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-25232_log.txt @@ -0,0 +1,1490 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/impute/_iterative.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 6be06ceafec1b2c914bb796dc256451fb0114815 +Author: SWE-bench +Date: Wed Sep 10 15:50:07 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff f7eea978097085a6781a0e92fc14ba7712a52d75 +diff --git a/sklearn/impute/_iterative.py b/sklearn/impute/_iterative.py +index 1d918bc0c..02f1d45f0 100644 +--- a/sklearn/impute/_iterative.py ++++ b/sklearn/impute/_iterative.py +@@ -117,6 +117,13 @@ class IterativeImputer(_BaseImputer): + Which strategy to use to initialize the missing values. Same as the + `strategy` parameter in :class:`~sklearn.impute.SimpleImputer`. + ++ fill_value : str or numerical value, default=None ++ When `initial_strategy` == "constant", `fill_value` is used to ++ replace all occurrences of missing values. For string or object ++ data types, `fill_value` must be a string. ++ If `None`, `fill_value` will be 0 when imputing numerical ++ data and "missing_value" for strings or object data types. ++ + imputation_order : {'ascending', 'descending', 'roman', 'arabic', \ + 'random'}, default='ascending' + The order in which the features will be imputed. Possible values: +@@ -289,6 +296,7 @@ class IterativeImputer(_BaseImputer): + "max_value": [None, Interval(Real, None, None, closed="both"), "array-like"], + "verbose": ["verbose"], + "random_state": ["random_state"], ++ "fill_value": "no_validation", # any object is valid + } + + def __init__( +@@ -301,6 +309,7 @@ class IterativeImputer(_BaseImputer): + tol=1e-3, + n_nearest_features=None, + initial_strategy="mean", ++ fill_value=None, + imputation_order="ascending", + skip_complete=False, + min_value=-np.inf, +@@ -322,6 +331,7 @@ class IterativeImputer(_BaseImputer): + self.tol = tol + self.n_nearest_features = n_nearest_features + self.initial_strategy = initial_strategy ++ self.fill_value = fill_value + self.imputation_order = imputation_order + self.skip_complete = skip_complete + self.min_value = min_value +@@ -613,6 +623,7 @@ class IterativeImputer(_BaseImputer): + self.initial_imputer_ = SimpleImputer( + missing_values=self.missing_values, + strategy=self.initial_strategy, ++ fill_value=self.fill_value, + keep_empty_features=self.keep_empty_features, + ) + X_filled = self.initial_imputer_.fit_transform(X) ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-x97onkx9/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.3.2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Using newest NumPy C API for extension sklearn.__check_build._check_build + Using newest NumPy C API for extension sklearn._isotonic + Using newest NumPy C API for extension sklearn._loss._loss + Using newest NumPy C API for extension sklearn.cluster._dbscan_inner + Using newest NumPy C API for extension sklearn.cluster._hierarchical_fast + Using newest NumPy C API for extension sklearn.cluster._k_means_common + Using newest NumPy C API for extension sklearn.cluster._k_means_lloyd + Using newest NumPy C API for extension sklearn.cluster._k_means_elkan + Using newest NumPy C API for extension sklearn.cluster._k_means_minibatch + Using newest NumPy C API for extension sklearn.datasets._svmlight_format_fast + Using old NumPy C API (version 1.7) for extension sklearn.decomposition._online_lda_fast + Using newest NumPy C API for extension sklearn.decomposition._cdnmf_fast + Using newest NumPy C API for extension sklearn.ensemble._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.histogram + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.splitting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._binning + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._predictor + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._bitset + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.common + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.utils + Using newest NumPy C API for extension sklearn.feature_extraction._hashing_fast + Using old NumPy C API (version 1.7) for extension sklearn.linear_model._cd_fast + Using newest NumPy C API for extension sklearn.linear_model._sgd_fast + Using newest NumPy C API for extension sklearn.linear_model._sag_fast + Using newest NumPy C API for extension sklearn.manifold._utils + Using newest NumPy C API for extension sklearn.manifold._barnes_hut_tsne + Using newest NumPy C API for extension sklearn.metrics._pairwise_fast + Using old NumPy C API (version 1.7) for extension sklearn.metrics._dist_metrics + Using newest NumPy C API for extension sklearn.metrics.cluster._expected_mutual_info_fast + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._datasets_pair + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._middle_term_computer + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._base + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._argkmin + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._radius_neighbors + Using old NumPy C API (version 1.7) for extension sklearn.preprocessing._csr_polynomial_expansion + Using newest NumPy C API for extension sklearn.neighbors._ball_tree + Using newest NumPy C API for extension sklearn.neighbors._kd_tree + Using newest NumPy C API for extension sklearn.neighbors._partition_nodes + Using newest NumPy C API for extension sklearn.neighbors._quad_tree + Using newest NumPy C API for extension sklearn.svm._newrand + Using newest NumPy C API for extension sklearn.svm._libsvm + Using newest NumPy C API for extension sklearn.svm._liblinear + Using old NumPy C API (version 1.7) for extension sklearn.svm._libsvm_sparse + Using old NumPy C API (version 1.7) for extension sklearn.tree._tree + Using newest NumPy C API for extension sklearn.tree._splitter + Using old NumPy C API (version 1.7) for extension sklearn.tree._criterion + Using newest NumPy C API for extension sklearn.tree._utils + Using old NumPy C API (version 1.7) for extension sklearn.utils.sparsefuncs_fast + Using newest NumPy C API for extension sklearn.utils._cython_blas + Using old NumPy C API (version 1.7) for extension sklearn.utils.arrayfuncs + Using newest NumPy C API for extension sklearn.utils.murmurhash + Using newest NumPy C API for extension sklearn.utils._fast_dict + Using newest NumPy C API for extension sklearn.utils._openmp_helpers + Using old NumPy C API (version 1.7) for extension sklearn.utils._seq_dataset + Using newest NumPy C API for extension sklearn.utils._weight_vector + Using newest NumPy C API for extension sklearn.utils._random + Using newest NumPy C API for extension sklearn.utils._logistic_sigmoid + Using newest NumPy C API for extension sklearn.utils._readonly_array_wrapper + Using newest NumPy C API for extension sklearn.utils._typedefs + Using newest NumPy C API for extension sklearn.utils._heap + Using newest NumPy C API for extension sklearn.utils._sorting + Using newest NumPy C API for extension sklearn.utils._vector_sentinel + Using newest NumPy C API for extension sklearn.utils._isfinite + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout f7eea978097085a6781a0e92fc14ba7712a52d75 sklearn/impute/tests/test_impute.py +Updated 0 paths from ebc92b606 ++ git apply -v - +Checking patch sklearn/impute/tests/test_impute.py... +Applied patch sklearn/impute/tests/test_impute.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/impute/tests/test_impute.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 217 items + +sklearn/impute/tests/test_impute.py .................................... [ 16%] +........................................................................ [ 49%] +........................................................................ [ 82%] +..................................... [100%] + +==================================== PASSES ==================================== +________________________ test_iterative_imputer_verbose ________________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 3) +[IterativeImputer] Change: 0.0019045209842708521, scaled tolerance: 0.00031622776601683794 +[IterativeImputer] Completing matrix with shape (100, 3) +[IterativeImputer] Completing matrix with shape (100, 3) +[IterativeImputer] Ending imputation round 1/1, elapsed time 0.00 +[IterativeImputer] Change: 0.0019045209842708521, scaled tolerance: 0.00031622776601683794 +[IterativeImputer] Completing matrix with shape (100, 3) +[IterativeImputer] Ending imputation round 1/1, elapsed time 0.00 +_______________ test_iterative_imputer_imputation_order[random] ________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +[IterativeImputer] Change: 2.1096828352335883, scaled tolerance: 0.001 +[IterativeImputer] Change: 2.227479112093088, scaled tolerance: 0.001 +________________ test_iterative_imputer_imputation_order[roman] ________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +[IterativeImputer] Change: 1.297374529698154, scaled tolerance: 0.001 +[IterativeImputer] Change: 0.8768415439909947, scaled tolerance: 0.001 +______________ test_iterative_imputer_imputation_order[ascending] ______________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +[IterativeImputer] Change: 2.2716110035022576, scaled tolerance: 0.001 +[IterativeImputer] Change: 1.2111132215283686, scaled tolerance: 0.001 +_____________ test_iterative_imputer_imputation_order[descending] ______________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +[IterativeImputer] Change: 2.0982658010381017, scaled tolerance: 0.001 +[IterativeImputer] Change: 2.6016513726080555, scaled tolerance: 0.001 +_______________ test_iterative_imputer_imputation_order[arabic] ________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +[IterativeImputer] Change: 1.4233955065382586, scaled tolerance: 0.001 +[IterativeImputer] Change: 1.314934149016349, scaled tolerance: 0.001 +____________________ test_iterative_imputer_clip_truncnorm _____________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (100, 10) +_______________________ test_iterative_imputer_rank_one ________________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (50, 50) +[IterativeImputer] Change: 5.630772844327311, scaled tolerance: 0.0009558763168822983 +[IterativeImputer] Change: 0.5316223476607369, scaled tolerance: 0.0009558763168822983 +[IterativeImputer] Change: 0.21568701467800055, scaled tolerance: 0.0009558763168822983 +[IterativeImputer] Change: 0.0738967853705116, scaled tolerance: 0.0009558763168822983 +[IterativeImputer] Change: 0.03276510268178359, scaled tolerance: 0.0009558763168822983 +_________________ test_iterative_imputer_transform_recovery[3] _________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (35, 70) +[IterativeImputer] Change: 19.78548640664092, scaled tolerance: 0.0022548050002662956 +[IterativeImputer] Change: 3.0469125292673764, scaled tolerance: 0.0022548050002662956 +[IterativeImputer] Change: 0.7911326572977742, scaled tolerance: 0.0022548050002662956 +[IterativeImputer] Change: 0.48185025870427045, scaled tolerance: 0.0022548050002662956 +[IterativeImputer] Change: 0.3530165225815814, scaled tolerance: 0.0022548050002662956 +[IterativeImputer] Completing matrix with shape (35, 70) +_________________ test_iterative_imputer_transform_recovery[5] _________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (35, 70) +[IterativeImputer] Change: 26.537736608659593, scaled tolerance: 0.0031998765600586504 +[IterativeImputer] Change: 4.084770825390869, scaled tolerance: 0.0031998765600586504 +[IterativeImputer] Change: 1.8098277160626333, scaled tolerance: 0.0031998765600586504 +[IterativeImputer] Change: 0.817924171298955, scaled tolerance: 0.0031998765600586504 +[IterativeImputer] Change: 0.3618280751160369, scaled tolerance: 0.0031998765600586504 +[IterativeImputer] Completing matrix with shape (35, 70) +____________________ test_iterative_imputer_additive_matrix ____________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (50, 10) +[IterativeImputer] Change: 19.86932209644357, scaled tolerance: 0.00637455640135348 +[IterativeImputer] Change: 1.402233518593352, scaled tolerance: 0.00637455640135348 +[IterativeImputer] Change: 0.02522860674217542, scaled tolerance: 0.00637455640135348 +[IterativeImputer] Change: 0.001333957840289779, scaled tolerance: 0.00637455640135348 +[IterativeImputer] Early stopping criterion reached. +[IterativeImputer] Completing matrix with shape (50, 10) +____________________ test_iterative_imputer_early_stopping _____________________ +----------------------------- Captured stdout call ----------------------------- +[IterativeImputer] Completing matrix with shape (50, 5) +[IterativeImputer] Change: 0.8615247280962689, scaled tolerance: 0.009672407669077543 +[IterativeImputer] Change: 0.06978402421047825, scaled tolerance: 0.009672407669077543 +[IterativeImputer] Change: 0.008883224246485164, scaled tolerance: 0.009672407669077543 +[IterativeImputer] Early stopping criterion reached. +[IterativeImputer] Completing matrix with shape (50, 5) +[IterativeImputer] Change: 0.8615247280962689, scaled tolerance: 0.0009672407669077543 +[IterativeImputer] Change: 0.06978402421047825, scaled tolerance: 0.0009672407669077543 +[IterativeImputer] Change: 0.008883224246485164, scaled tolerance: 0.0009672407669077543 +[IterativeImputer] Completing matrix with shape (50, 5) +[IterativeImputer] Change: 0.8615247280962689, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.06978402421047825, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.008883224246485164, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0025289128595119108, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0015438325631412508, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0027774415421166904, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0029303525352813026, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0026572522420765243, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0023876297964581933, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0021585368282186074, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0019623775526326215, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.059638811425981604, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0032655245382657017, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0006706876797126574, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0007562027947765441, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0007567834243369688, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0007297761421930365, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0006937950618152999, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0006561410002325352, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0006196532926180456, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0005855242571175569, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0005542640628919716, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0005260364544920418, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0005007944906058048, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0004783553270880092, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00045845567785312777, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00044079264353285436, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0004250556748296025, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00041094554845533607, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003981893540262252, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00038654567612022434, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00037581097882954245, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00036581929006469435, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00035644286841222256, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003476058293063952, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003470335969707021, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00034618556072471204, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00034508975938858655, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003437722559951964, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003422559190795066, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003405644783888266, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003387167276419391, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003367307828917171, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003346229432409295, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00033241114095357294, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003301022200603715, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00032771267365324167, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.000325253498670762, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00032273503003343515, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00032016658612699783, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00031755668990237143, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003149131834035805, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00031224312119607425, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00030955294689719373, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00030684850402568076, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0003041350689166715, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00030141743647300184, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00029869988071814027, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002959862450112316, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00029327995790378453, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00029058406346622184, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002879012491835489, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00028523386914414833, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002825839874639087, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002799533726695405, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00027734354281566675, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002747557805708768, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00027219115428725113, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00026965053731379043, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00026713462643746314, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00026464395883073547, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002621789286714124, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002597398009319893, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00025732673049862903, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002549397671864524, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00025257887399992435, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.000250243936687055, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00024793477423613874, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00024565114804534285, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00024339277092595354, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00024115931488918538, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002389504185207128, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00023676569302722925, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00023460472867619514, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00023246709923875272, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00023035236755488894, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00022826008855485191, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00022618981383475123, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00022414109444581984, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00022211348309258971, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00022010653744833353, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00021811982146164796, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00021615290737395446, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00021420537705940657, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002122768227801504, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002103668489397241, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00020847507210413826, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00020660112183674972, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.0002047446410199348, scaled tolerance: 0.0 +[IterativeImputer] Change: 0.00020305496136294524, scaled tolerance: 0.0 +=========================== short test summary info ============================ +PASSED sklearn/impute/tests/test_impute.py::test_imputation_shape[mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_shape[median] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_shape[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_shape[constant] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning[mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning[median] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning_feature_names[mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning_feature_names[median] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_deletion_warning_feature_names[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_error_sparse_0[mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_error_sparse_0[median] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_error_sparse_0[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_error_sparse_0[constant] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_mean_median +PASSED sklearn/impute/tests/test_impute.py::test_imputation_median_special_cases +PASSED sklearn/impute/tests/test_impute.py::test_imputation_mean_median_error_invalid_type[None-mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_mean_median_error_invalid_type[None-median] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_mean_median_error_invalid_type[object-mean] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_mean_median_error_invalid_type[object-median] +PASSED 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sklearn/impute/tests/test_impute.py::test_iterative_imputer_missing_at_transform[median] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_missing_at_transform[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_transform_stochasticity +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_no_missing +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_rank_one +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_transform_recovery[3] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_transform_recovery[5] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_additive_matrix +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_early_stopping +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_catch_warning +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like[scalars] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like[None-default] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like[inf] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like[lists] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like[lists-with-inf] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_catch_min_max_error[100-0-min_value >= max_value.] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_catch_min_max_error[inf--inf-min_value >= max_value.] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_catch_min_max_error[min_value2-max_value2-_value' should be of shape] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like_imputation[None-vs-inf] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_min_max_array_like_imputation[Scalar-vs-vector] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_skip_non_missing[True] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_skip_non_missing[False] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[None-None] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[None-1] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[None-rs_imputer2] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[1-None] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[1-1] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[1-rs_imputer2] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[rs_estimator2-None] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_dont_set_random_state[rs_estimator2-1] 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sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0--1-int32-csc_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0-nan-float64-csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0--1-int32-csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0-nan-float64-coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0--1-int32-coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0-nan-float64-lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0--1-int32-lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0-nan-float64-bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[missing-only-3-features_indices0--1-int32-bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-array] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-0-int32-array] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-array] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-csc_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-csc_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1-nan-float64-bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_new[all-3-features_indices1--1-int32-bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_raise_on_sparse_with_missing_0[csc_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_raise_on_sparse_with_missing_0[csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_raise_on_sparse_with_missing_0[coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_raise_on_sparse_with_missing_0[lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_raise_on_sparse_with_missing_0[bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-array-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-array-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-array-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[0-array-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[0-array-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[0-array-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csc_matrix-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csc_matrix-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csc_matrix-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csr_matrix-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csr_matrix-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-csr_matrix-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-coo_matrix-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-coo_matrix-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-coo_matrix-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-lil_matrix-True] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-lil_matrix-False] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_sparse_param[nan-lil_matrix-auto] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_string +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_with_imputer[X0-a-X_trans_exp0] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_with_imputer[X1-nan-X_trans_exp1] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_with_imputer[X2-nan-X_trans_exp2] +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_with_imputer[X3-None-X_trans_exp3] +PASSED sklearn/impute/tests/test_impute.py::test_inconsistent_dtype_X_missing_values[NaN-nan-Input X contains 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sklearn/impute/tests/test_impute.py::test_simple_imputation_add_indicator_sparse_matrix[csr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_add_indicator_sparse_matrix[coo_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_add_indicator_sparse_matrix[lil_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_add_indicator_sparse_matrix[bsr_matrix] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_string_list[most_frequent-b] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_string_list[constant-missing_value] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_order[ascending-idx_order0] +PASSED sklearn/impute/tests/test_impute.py::test_imputation_order[descending-idx_order1] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_inverse_transform[-1] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_inverse_transform[nan] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_inverse_transform_exceptions[-1] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputation_inverse_transform_exceptions[nan] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[extra_value-array0-object-extra_value-2] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[most_frequent_value-array1-object-extra_value-1] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[a-array2-object-a-2] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[min_value-array3-object-z-2] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[10-array4-int-10-2] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[1-array5-int-10-1] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[10-array6-int-10-2] +PASSED sklearn/impute/tests/test_impute.py::test_most_frequent[1-array7-int-10-2] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_keep_empty_features[mean] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_keep_empty_features[median] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_keep_empty_features[most_frequent] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_keep_empty_features[constant] +PASSED sklearn/impute/tests/test_impute.py::test_iterative_imputer_constant_fill_value +PASSED sklearn/impute/tests/test_impute.py::test_knn_imputer_keep_empty_features[True] +PASSED sklearn/impute/tests/test_impute.py::test_knn_imputer_keep_empty_features[False] +PASSED sklearn/impute/tests/test_impute.py::test_simple_impute_pd_na +PASSED sklearn/impute/tests/test_impute.py::test_missing_indicator_feature_names_out +PASSED sklearn/impute/tests/test_impute.py::test_imputer_lists_fit_transform +PASSED sklearn/impute/tests/test_impute.py::test_imputer_transform_preserves_numeric_dtype[float32] +PASSED sklearn/impute/tests/test_impute.py::test_imputer_transform_preserves_numeric_dtype[float64] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_constant_keep_empty_features[True-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_constant_keep_empty_features[True-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_constant_keep_empty_features[False-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_constant_keep_empty_features[False-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-mean-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-mean-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-median-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-median-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-most_frequent-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[True-most_frequent-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-mean-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-mean-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-median-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-median-sparse] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-most_frequent-array] +PASSED sklearn/impute/tests/test_impute.py::test_simple_imputer_keep_empty_features[False-most_frequent-sparse] +================ 217 passed, 211 warnings in 129.12s (0:02:09) ================= ++ : '>>>>> End Test Output' ++ git checkout f7eea978097085a6781a0e92fc14ba7712a52d75 sklearn/impute/tests/test_impute.py +Updated 1 path from ebc92b606 diff --git a/verify_logs/scikit-learn__scikit-learn-25747_log.txt b/verify_logs/scikit-learn__scikit-learn-25747_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..62dd5a480ae8fe919ccfd8b52e19459ae62ce191 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-25747_log.txt @@ -0,0 +1,1074 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/utils/_set_output.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 4c2732371d666f5f78c2a1264630450a19a55c8d +Author: SWE-bench +Date: Wed Sep 10 15:51:56 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 2c867b8f822eb7a684f0d5c4359e4426e1c9cfe0 +diff --git a/sklearn/utils/_set_output.py b/sklearn/utils/_set_output.py +index 335773c6a..1321293ac 100644 +--- a/sklearn/utils/_set_output.py ++++ b/sklearn/utils/_set_output.py +@@ -56,9 +56,25 @@ def _wrap_in_pandas_container( + if columns is not None: + data_to_wrap.columns = columns + if index is not None: +- data_to_wrap.index = index ++ # Only set the index if the length matches. If the length doesn't ++ # match, the transformer has changed the index, and we should keep ++ # the transformer's index. ++ if len(data_to_wrap.index) == len(index): ++ data_to_wrap.index = index + return data_to_wrap + ++ if isinstance(data_to_wrap, pd.Series): ++ # For Series, we need to convert to DataFrame while preserving ++ # the Series index if it differs from the input index. ++ if index is not None and len(data_to_wrap.index) == len(index): ++ # Index lengths match, use the input index ++ return pd.DataFrame(data_to_wrap, index=index, columns=columns) ++ else: ++ # Index lengths don't match, preserve the Series index ++ if columns is None: ++ columns = [data_to_wrap.name] if data_to_wrap.name is not None else ["value"] ++ return pd.DataFrame(data_to_wrap, columns=columns) ++ + return pd.DataFrame(data_to_wrap, index=index, columns=columns) + + ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-0hscffmc/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.19.2) +Requirement already satisfied: scipy>=1.3.2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.5.2) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Using newest NumPy C API for extension sklearn.__check_build._check_build + Using newest NumPy C API for extension sklearn._isotonic + Using newest NumPy C API for extension sklearn._loss._loss + Using newest NumPy C API for extension sklearn.cluster._dbscan_inner + Using newest NumPy C API for extension sklearn.cluster._hierarchical_fast + Using newest NumPy C API for extension sklearn.cluster._k_means_common + Using newest NumPy C API for extension sklearn.cluster._k_means_lloyd + Using newest NumPy C API for extension sklearn.cluster._k_means_elkan + Using newest NumPy C API for extension sklearn.cluster._k_means_minibatch + Using newest NumPy C API for extension sklearn.datasets._svmlight_format_fast + Using newest NumPy C API for extension sklearn.decomposition._online_lda_fast + Using newest NumPy C API for extension sklearn.decomposition._cdnmf_fast + Using newest NumPy C API for extension sklearn.ensemble._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._gradient_boosting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.histogram + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.splitting + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._binning + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._predictor + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting._bitset + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.common + Using newest NumPy C API for extension sklearn.ensemble._hist_gradient_boosting.utils + Using newest NumPy C API for extension sklearn.feature_extraction._hashing_fast + Using old NumPy C API (version 1.7) for extension sklearn.linear_model._cd_fast + Using newest NumPy C API for extension sklearn.linear_model._sgd_fast + Using newest NumPy C API for extension sklearn.linear_model._sag_fast + Using newest NumPy C API for extension sklearn.manifold._utils + Using newest NumPy C API for extension sklearn.manifold._barnes_hut_tsne + Using newest NumPy C API for extension sklearn.metrics._pairwise_fast + Using newest NumPy C API for extension sklearn.metrics._dist_metrics + Using newest NumPy C API for extension sklearn.metrics.cluster._expected_mutual_info_fast + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._datasets_pair + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._middle_term_computer + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._base + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._argkmin + Using newest NumPy C API for extension sklearn.metrics._pairwise_distances_reduction._radius_neighbors + Using newest NumPy C API for extension sklearn.preprocessing._csr_polynomial_expansion + Using newest NumPy C API for extension sklearn.neighbors._ball_tree + Using newest NumPy C API for extension sklearn.neighbors._kd_tree + Using newest NumPy C API for extension sklearn.neighbors._partition_nodes + Using newest NumPy C API for extension sklearn.neighbors._quad_tree + Using newest NumPy C API for extension sklearn.svm._newrand + Using newest NumPy C API for extension sklearn.svm._libsvm + Using newest NumPy C API for extension sklearn.svm._liblinear + Using newest NumPy C API for extension sklearn.svm._libsvm_sparse + Using newest NumPy C API for extension sklearn.tree._tree + Using newest NumPy C API for extension sklearn.tree._splitter + Using newest NumPy C API for extension sklearn.tree._criterion + Using newest NumPy C API for extension sklearn.tree._utils + Using old NumPy C API (version 1.7) for extension sklearn.utils.sparsefuncs_fast + Using newest NumPy C API for extension sklearn.utils._cython_blas + Using newest NumPy C API for extension sklearn.utils.arrayfuncs + Using newest NumPy C API for extension sklearn.utils.murmurhash + Using newest NumPy C API for extension sklearn.utils._fast_dict + Using newest NumPy C API for extension sklearn.utils._openmp_helpers + Using newest NumPy C API for extension sklearn.utils._seq_dataset + Using newest NumPy C API for extension sklearn.utils._weight_vector + Using newest NumPy C API for extension sklearn.utils._random + Using newest NumPy C API for extension sklearn.utils._logistic_sigmoid + Using newest NumPy C API for extension sklearn.utils._typedefs + Using newest NumPy C API for extension sklearn.utils._heap + Using newest NumPy C API for extension sklearn.utils._sorting + Using newest NumPy C API for extension sklearn.utils._vector_sentinel + Using newest NumPy C API for extension sklearn.utils._isfinite + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.20 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout 2c867b8f822eb7a684f0d5c4359e4426e1c9cfe0 sklearn/utils/tests/test_set_output.py +Updated 0 paths from 038ab1258 ++ git apply -v - +Checking patch sklearn/utils/tests/test_set_output.py... +Applied patch sklearn/utils/tests/test_set_output.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/utils/tests/test_set_output.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-7.4.4, pluggy-1.0.0 +rootdir: /testbed +configfile: setup.cfg +collected 15 items + +sklearn/utils/tests/test_set_output.py ..............F [100%] + +=================================== FAILURES =================================== +______________________ test_set_output_pandas_keep_index _______________________ + + def test_set_output_pandas_keep_index(): + """Check that set_output does not override index. + + Non-regression test for gh-25730. + """ + pd = pytest.importorskip("pandas") + + X = pd.DataFrame([[1, 2, 3], [4, 5, 6]], index=[0, 1]) + est = EstimatorWithSetOutputIndex().set_output(transform="pandas") + est.fit(X) + + X_trans = est.transform(X) +> assert_array_equal(X_trans.index, ["s0", "s1"]) +E AssertionError:  +E Arrays are not equal +E  +E Mismatched elements: 1 / 1 (100%) +E x: array([0, 1]) +E y: array(['s0', 's1'], dtype='>>>> End Test Output' ++ git checkout 2c867b8f822eb7a684f0d5c4359e4426e1c9cfe0 sklearn/utils/tests/test_set_output.py +Updated 1 path from 038ab1258 diff --git a/verify_logs/scikit-learn__scikit-learn-25931_log.txt b/verify_logs/scikit-learn__scikit-learn-25931_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..770fa9d7c34bae5b1b8b9519bde7524f49d5ed58 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-25931_log.txt @@ -0,0 +1,1000 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/ensemble/_iforest.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit f62de1e62b63501859403c4a79875a4284c2358f +Author: SWE-bench +Date: Wed Sep 10 15:55:00 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff e3d1f9ac39e4bf0f31430e779acc50fb05fe1b64 +diff --git a/sklearn/ensemble/_iforest.py b/sklearn/ensemble/_iforest.py +index 4d6c1c3f0..bcb1fc98e 100644 +--- a/sklearn/ensemble/_iforest.py ++++ b/sklearn/ensemble/_iforest.py +@@ -345,7 +345,13 @@ class IsolationForest(OutlierMixin, BaseBagging): + return self + + # else, define offset_ wrt contamination parameter +- self.offset_ = np.percentile(self.score_samples(X), 100.0 * self.contamination) ++ # Compute offset from score samples ++ # Use the same validation as score_samples to handle sparse matrices ++ if issparse(X): ++ X_score = X.tocsr() # Convert to csr format ++ else: ++ X_score = X ++ self.offset_ = np.percentile(-self._compute_chunked_score_samples(X_score), 100.0 * self.contamination) + + return self + ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-z6v43_0y/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.3.2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout e3d1f9ac39e4bf0f31430e779acc50fb05fe1b64 sklearn/ensemble/tests/test_iforest.py +Updated 0 paths from 9079e26dd ++ git apply -v - +Checking patch sklearn/ensemble/tests/test_iforest.py... +Applied patch sklearn/ensemble/tests/test_iforest.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/ensemble/tests/test_iforest.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 22 items + +sklearn/ensemble/tests/test_iforest.py ...................... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest[42] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_sparse[42] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_error +PASSED sklearn/ensemble/tests/test_iforest.py::test_recalculate_max_depth +PASSED sklearn/ensemble/tests/test_iforest.py::test_max_samples_attribute +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_parallel_regression[42] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_performance[42] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_works[42-0.25] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_works[42-auto] +PASSED sklearn/ensemble/tests/test_iforest.py::test_max_samples_consistency +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_subsampled_features +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_average_path_length +PASSED sklearn/ensemble/tests/test_iforest.py::test_score_samples +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_warm_start +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works1[42-0.25-3] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works1[42-auto-2] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works2[42-0.25-3] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_chunks_works2[42-auto-2] +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_with_uniform_data +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_with_n_jobs_does_not_segfault +PASSED sklearn/ensemble/tests/test_iforest.py::test_base_estimator_property_deprecated +PASSED sklearn/ensemble/tests/test_iforest.py::test_iforest_preserve_feature_names +======================== 22 passed, 3 warnings in 2.45s ======================== ++ : '>>>>> End Test Output' ++ git checkout e3d1f9ac39e4bf0f31430e779acc50fb05fe1b64 sklearn/ensemble/tests/test_iforest.py +Updated 1 path from 9079e26dd diff --git a/verify_logs/scikit-learn__scikit-learn-25973_log.txt b/verify_logs/scikit-learn__scikit-learn-25973_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..85eb0c75237e303e954adebbd4274c672c3464c1 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-25973_log.txt @@ -0,0 +1,1061 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/feature_selection/_sequential.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 64aded1e336cd267debb6643e6a6856bfa70d502 +Author: SWE-bench +Date: Wed Sep 10 15:57:28 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 10dbc142bd17ccf7bd38eec2ac04b52ce0d1009e +diff --git a/sklearn/feature_selection/_sequential.py b/sklearn/feature_selection/_sequential.py +index e983c55de..a165fd2de 100644 +--- a/sklearn/feature_selection/_sequential.py ++++ b/sklearn/feature_selection/_sequential.py +@@ -8,12 +8,12 @@ import numpy as np + import warnings + + from ._base import SelectorMixin +-from ..base import BaseEstimator, MetaEstimatorMixin, clone ++from ..base import BaseEstimator, MetaEstimatorMixin, clone, is_classifier + from ..utils._param_validation import HasMethods, Hidden, Interval, StrOptions + from ..utils._param_validation import RealNotInt + from ..utils._tags import _safe_tags + from ..utils.validation import check_is_fitted +-from ..model_selection import cross_val_score ++from ..model_selection import check_cv, cross_val_score + from ..metrics import get_scorer_names + + +@@ -259,6 +259,8 @@ class SequentialFeatureSelector(SelectorMixin, MetaEstimatorMixin, BaseEstimator + if self.tol is not None and self.tol < 0 and self.direction == "forward": + raise ValueError("tol must be positive when doing forward selection") + ++ # Check cv and convert iterable to a reusable format ++ self.cv = check_cv(self.cv, y, classifier=is_classifier(self.estimator)) + cloned_estimator = clone(self.estimator) + + # the current mask corresponds to the set of features: ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-xe3cbc9v/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout 10dbc142bd17ccf7bd38eec2ac04b52ce0d1009e sklearn/feature_selection/tests/test_sequential.py +Updated 0 paths from e2d89cd8b ++ git apply -v - +Checking patch sklearn/feature_selection/tests/test_sequential.py... +Applied patch sklearn/feature_selection/tests/test_sequential.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/feature_selection/tests/test_sequential.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 73 items + +sklearn/feature_selection/tests/test_sequential.py ..................... [ 28%] +.................................................... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/feature_selection/tests/test_sequential.py::test_bad_n_features_to_select +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[1-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[1-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[5-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[5-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[9-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[9-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[auto-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select[auto-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_auto[forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_auto[backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_stopping_criterion[forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_stopping_criterion[backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[0.1-1-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[0.1-1-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[1.0-10-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[1.0-10-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[0.5-5-forward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_n_features_to_select_float[0.5-5-backward] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-0] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-1] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-2] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-4] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-5] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-6] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-7] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-8] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-forward-9] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-0] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-1] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-2] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-4] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-5] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-6] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-7] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-8] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[2-expected_selected_features0-backward-9] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-0] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-1] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-2] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-4] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-5] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-6] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-7] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-8] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-forward-9] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-0] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-1] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-2] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-4] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-5] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-6] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-7] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-8] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sanity[1-expected_selected_features1-backward-9] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_sparse_support +PASSED sklearn/feature_selection/tests/test_sequential.py::test_nan_support +PASSED sklearn/feature_selection/tests/test_sequential.py::test_pipeline_support +PASSED sklearn/feature_selection/tests/test_sequential.py::test_raise_deprecation_warning +PASSED sklearn/feature_selection/tests/test_sequential.py::test_unsupervised_model_fit[2] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_unsupervised_model_fit[3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_no_y_validation_model_fit[no_validation] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_no_y_validation_model_fit[1j] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_no_y_validation_model_fit[99.9] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_no_y_validation_model_fit[nan] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_no_y_validation_model_fit[3] +PASSED sklearn/feature_selection/tests/test_sequential.py::test_forward_neg_tol_error +PASSED sklearn/feature_selection/tests/test_sequential.py::test_backward_neg_tol +PASSED sklearn/feature_selection/tests/test_sequential.py::test_cv_generator_support +============================== 73 passed in 3.24s ============================== ++ : '>>>>> End Test Output' ++ git checkout 10dbc142bd17ccf7bd38eec2ac04b52ce0d1009e sklearn/feature_selection/tests/test_sequential.py +Updated 1 path from e2d89cd8b diff --git a/verify_logs/scikit-learn__scikit-learn-26194_log.txt b/verify_logs/scikit-learn__scikit-learn-26194_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..d3cea4c59591fe25593fded768a378b7c3f0fc47 --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-26194_log.txt @@ -0,0 +1,1108 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/metrics/_ranking.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 0e5e74b27719d113fe25f04b6fb83e15a27cf7bb +Author: SWE-bench +Date: Wed Sep 10 15:57:21 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff e886ce4e1444c61b865e7839c9cff5464ee20ace +diff --git a/sklearn/metrics/_ranking.py b/sklearn/metrics/_ranking.py +index 0cdead923..bd809ddb1 100644 +--- a/sklearn/metrics/_ranking.py ++++ b/sklearn/metrics/_ranking.py +@@ -1083,7 +1083,13 @@ def roc_curve( + # to make sure that the curve starts at (0, 0) + tps = np.r_[0, tps] + fps = np.r_[0, fps] +- thresholds = np.r_[thresholds[0] + 1, thresholds] ++ # For probability estimates (scores in [0, 1]) with max < 1.0, use threshold=1.0 ++ # to ensure that no samples are predicted positive. This prevents thresholds > 1 ++ # for probability estimates. When max(y_score) >= 1.0, keep the original behavior. ++ if thresholds[0] < 1.0 and thresholds[-1] >= 0.0: ++ thresholds = np.r_[1.0, thresholds] ++ else: ++ thresholds = np.r_[thresholds[0] + 1, thresholds] + + if fps[-1] <= 0: + warnings.warn( ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-7avlm_2a/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout e886ce4e1444c61b865e7839c9cff5464ee20ace sklearn/metrics/tests/test_ranking.py +Updated 0 paths from 397f77cbc ++ git apply -v - +Checking patch sklearn/metrics/tests/test_ranking.py... +Applied patch sklearn/metrics/tests/test_ranking.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/metrics/tests/test_ranking.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 205 items + +sklearn/metrics/tests/test_ranking.py .........F........................ [ 16%] +........................................................................ [ 51%] +........................................................................ [ 86%] +..........................F [100%] + +=================================== FAILURES =================================== +_______________________ test_roc_curve_drop_intermediate _______________________ + + def test_roc_curve_drop_intermediate(): + # Test that drop_intermediate drops the correct thresholds + y_true = [0, 0, 0, 0, 1, 1] + y_score = [0.0, 0.2, 0.5, 0.6, 0.7, 1.0] + tpr, fpr, thresholds = roc_curve(y_true, y_score, drop_intermediate=True) +> assert_array_almost_equal(thresholds, [np.inf, 1.0, 0.7, 0.0]) + +sklearn/metrics/tests/test_ranking.py:421: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/opt/miniconda3/envs/testbed/lib/python3.9/contextlib.py:79: in inner + return func(*args, **kwds) +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +args = (.compare at 0x7fee970ced30>, array([2. , 1. , 0.7, 0. ]), [inf, 1.0, 0.7, 0.0]) +kwds = {'err_msg': '', 'header': 'Arrays are not almost equal to 6 decimals', 'precision': 6, 'verbose': True} + + @wraps(func) + def inner(*args, **kwds): + with self._recreate_cm(): +> return func(*args, **kwds) +E AssertionError:  +E Arrays are not almost equal to 6 decimals +E  +E x and y +inf location mismatch: +E x: array([2. , 1. , 0.7, 0. ]) +E y: array([inf, 1. , 0.7, 0. ]) + +/opt/miniconda3/envs/testbed/lib/python3.9/contextlib.py:79: AssertionError +_________________ test_roc_curve_with_probablity_estimates[42] _________________ + +global_random_seed = 42 + + def test_roc_curve_with_probablity_estimates(global_random_seed): + """Check that thresholds do not exceed 1.0 when `y_score` is a probability + estimate. + + Non-regression test for: + https://github.com/scikit-learn/scikit-learn/issues/26193 + """ + rng = np.random.RandomState(global_random_seed) + y_true = rng.randint(0, 2, size=10) + y_score = rng.rand(10) + _, _, thresholds = roc_curve(y_true, y_score) +> assert np.isinf(thresholds[0]) +E AssertionError: assert False +E + where False = (1.0) +E + where = np.isinf + +sklearn/metrics/tests/test_ranking.py:2215: AssertionError +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve[True] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve[False] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_end_points +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_returns_consistency +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_multi +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_confidence +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_hard +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_one_label +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_toydata +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_curve_fpr_tpr_increasing +PASSED sklearn/metrics/tests/test_ranking.py::test_auc +PASSED sklearn/metrics/tests/test_ranking.py::test_auc_errors +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata[y_true0-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata[y_true1-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata[y_true2-labels2] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata[y_true3-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata_binary[y_true0-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovo_roc_auc_toydata_binary[y_true1-labels1] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovr_roc_auc_toydata[y_true0-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovr_roc_auc_toydata[y_true1-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovr_roc_auc_toydata[y_true2-labels2] +PASSED sklearn/metrics/tests/test_ranking.py::test_multiclass_ovr_roc_auc_toydata[y_true3-labels3] +PASSED sklearn/metrics/tests/test_ranking.py::test_perfect_imperfect_chance_multiclass_roc_auc[ovr-macro] +PASSED sklearn/metrics/tests/test_ranking.py::test_perfect_imperfect_chance_multiclass_roc_auc[ovr-micro] +PASSED sklearn/metrics/tests/test_ranking.py::test_perfect_imperfect_chance_multiclass_roc_auc[ovo-macro] +PASSED sklearn/metrics/tests/test_ranking.py::test_micro_averaged_ovr_roc_auc[42] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Parameter 'labels' must be unique-y_true0-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Parameter 'labels' must be unique-y_true1-labels1] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Number of classes in y_true not equal to the number of columns in 'y_score'-y_true2-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Parameter 'labels' must be ordered-y_true3-labels3] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Number of given labels, 2, not equal to the number of columns in 'y_score', 3-y_true4-labels4] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Number of given labels, 2, not equal to the number of columns in 'y_score', 3-y_true5-labels5] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Number of given labels, 4, not equal to the number of columns in 'y_score', 3-y_true6-labels6] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-Number of given labels, 4, not equal to the number of columns in 'y_score', 3-y_true7-labels7] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-'y_true' contains labels not in parameter 'labels'-y_true8-labels8] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-'y_true' contains labels not in parameter 'labels'-y_true9-labels9] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovo-'y_true' contains labels not in parameter 'labels'-y_true10-labels10] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Parameter 'labels' must be unique-y_true0-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Parameter 'labels' must be unique-y_true1-labels1] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Number of classes in y_true not equal to the number of columns in 'y_score'-y_true2-None] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Parameter 'labels' must be ordered-y_true3-labels3] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Number of given labels, 2, not equal to the number of columns in 'y_score', 3-y_true4-labels4] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Number of given labels, 2, not equal to the number of columns in 'y_score', 3-y_true5-labels5] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Number of given labels, 4, not equal to the number of columns in 'y_score', 3-y_true6-labels6] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-Number of given labels, 4, not equal to the number of columns in 'y_score', 3-y_true7-labels7] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-'y_true' contains labels not in parameter 'labels'-y_true8-labels8] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-'y_true' contains labels not in parameter 'labels'-y_true9-labels9] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_labels_error[ovr-'y_true' contains labels not in parameter 'labels'-y_true10-labels10] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_error[average must be one of \\('macro', 'weighted', None\\) for multiclass problems-kwargs0] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_error[average must be one of \\('micro', 'macro', 'weighted', None\\) for multiclass problems-kwargs1] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_error[sample_weight is not supported for multiclass one-vs-one ROC AUC, 'sample_weight' must be None in this case-kwargs2] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_error[Partial AUC computation not available in multiclass setting, 'max_fpr' must be set to `None`, received `max_fpr=0.5` instead-kwargs3] +PASSED sklearn/metrics/tests/test_ranking.py::test_roc_auc_score_multiclass_error[multi_class must be in \\('ovo', 'ovr'\\)-kwargs4] +PASSED sklearn/metrics/tests/test_ranking.py::test_auc_score_non_binary_class +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_multiclass_error[det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_multiclass_error[precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_multiclass_error[roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_implicit_pos_label[det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_implicit_pos_label[precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_implicit_pos_label[roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_zero_sample_weight[det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_zero_sample_weight[precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_binary_clf_curve_zero_sample_weight[roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_precision_recall_curve[True] +PASSED sklearn/metrics/tests/test_ranking.py::test_precision_recall_curve[False] +PASSED sklearn/metrics/tests/test_ranking.py::test_precision_recall_curve_toydata[True] +PASSED sklearn/metrics/tests/test_ranking.py::test_precision_recall_curve_toydata[False] +PASSED sklearn/metrics/tests/test_ranking.py::test_precision_recall_curve_drop_intermediate +PASSED sklearn/metrics/tests/test_ranking.py::test_average_precision_constant_values +PASSED sklearn/metrics/tests/test_ranking.py::test_average_precision_score_pos_label_errors +PASSED sklearn/metrics/tests/test_ranking.py::test_score_scale_invariance +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true0-y_score0-expected_fpr0-expected_fnr0] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true1-y_score1-expected_fpr1-expected_fnr1] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true2-y_score2-expected_fpr2-expected_fnr2] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true3-y_score3-expected_fpr3-expected_fnr3] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true4-y_score4-expected_fpr4-expected_fnr4] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true5-y_score5-expected_fpr5-expected_fnr5] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true6-y_score6-expected_fpr6-expected_fnr6] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true7-y_score7-expected_fpr7-expected_fnr7] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true8-y_score8-expected_fpr8-expected_fnr8] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true9-y_score9-expected_fpr9-expected_fnr9] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true10-y_score10-expected_fpr10-expected_fnr10] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true11-y_score11-expected_fpr11-expected_fnr11] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true12-y_score12-expected_fpr12-expected_fnr12] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true13-y_score13-expected_fpr13-expected_fnr13] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true14-y_score14-expected_fpr14-expected_fnr14] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true15-y_score15-expected_fpr15-expected_fnr15] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true16-y_score16-expected_fpr16-expected_fnr16] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true17-y_score17-expected_fpr17-expected_fnr17] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true18-y_score18-expected_fpr18-expected_fnr18] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_toydata[y_true19-y_score19-expected_fpr19-expected_fnr19] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true0-y_score0-expected_fpr0-expected_fnr0] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true1-y_score1-expected_fpr1-expected_fnr1] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true2-y_score2-expected_fpr2-expected_fnr2] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true3-y_score3-expected_fpr3-expected_fnr3] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true4-y_score4-expected_fpr4-expected_fnr4] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true5-y_score5-expected_fpr5-expected_fnr5] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true6-y_score6-expected_fpr6-expected_fnr6] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_tie_handling[y_true7-y_score7-expected_fpr7-expected_fnr7] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_sanity_check +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_constant_scores[0] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_constant_scores[0.25] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_constant_scores[0.5] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_constant_scores[0.75] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_constant_scores[1] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_perfect_scores[y_true0] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_perfect_scores[y_true1] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_perfect_scores[y_true2] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_perfect_scores[y_true3] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_perfect_scores[y_true4] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_bad_input[y_true0-y_pred0-inconsistent numbers of samples] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_bad_input[y_true1-y_pred1-inconsistent numbers of samples] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_bad_input[y_true2-y_pred2-Only one class present in y_true] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_bad_input[y_true3-y_pred3-Only one class present in y_true] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_bad_input[y_true4-y_pred4-pos_label is not specified] +PASSED sklearn/metrics/tests/test_ranking.py::test_det_curve_pos_label +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[label_ranking_average_precision_score-check_lrap_toy] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[label_ranking_average_precision_score-check_lrap_without_tie_and_increasing_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[label_ranking_average_precision_score-check_lrap_only_ties] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[label_ranking_average_precision_score-check_zero_or_all_relevant_labels] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[_my_lrap-check_lrap_toy] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[_my_lrap-check_lrap_without_tie_and_increasing_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[_my_lrap-check_lrap_only_ties] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avp[_my_lrap-check_zero_or_all_relevant_labels] +PASSED sklearn/metrics/tests/test_ranking.py::test_lrap_error_raised +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-2-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-2-2] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-2-8] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-2-20] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-5-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-5-2] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-5-8] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-5-20] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-10-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-10-2] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-10-8] +PASSED sklearn/metrics/tests/test_ranking.py::test_alternative_lrap_implementation[0-10-20] +PASSED sklearn/metrics/tests/test_ranking.py::test_lrap_sample_weighting_zero_labels +PASSED sklearn/metrics/tests/test_ranking.py::test_coverage_error +PASSED sklearn/metrics/tests/test_ranking.py::test_coverage_tie_handling +PASSED sklearn/metrics/tests/test_ranking.py::test_coverage_1d_error_message[y_true0-y_score0] +PASSED sklearn/metrics/tests/test_ranking.py::test_coverage_1d_error_message[y_true1-y_score1] +PASSED sklearn/metrics/tests/test_ranking.py::test_coverage_1d_error_message[y_true2-y_score2] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_loss +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_appropriate_input_shape +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_loss_ties_handling +PASSED sklearn/metrics/tests/test_ranking.py::test_dcg_score +PASSED sklearn/metrics/tests/test_ranking.py::test_dcg_ties +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_ignore_ties_with_k +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_negative_ndarray_warn +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_invariant +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_toy_examples[True] +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_toy_examples[False] +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_error_single_document +PASSED sklearn/metrics/tests/test_ranking.py::test_ndcg_score +PASSED sklearn/metrics/tests/test_ranking.py::test_partial_roc_auc_score +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score[y_true0-1-0.25] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score[y_true1-2-0.5] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score[y_true2-3-0.75] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score0-1-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score1-1-0.5] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score2-2-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score3-1-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score4-1-0.5] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_binary[y_score5-2-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[True-y_true0-0.75-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[True-y_true1-0.5-labels1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[True-y_true2-0.5-labels2] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[True-y_true3-0.75-labels3] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[False-y_true0-0.75-labels0] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[False-y_true1-0.5-labels1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[False-y_true2-0.5-labels2] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_multiclass_with_labels[False-y_true3-0.75-labels3] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_increasing +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_ties[y_true0-1-0.25] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_ties[y_true1-2-0.5] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_ties[y_true2-3-1] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_warning[y_true0-4] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_warning[y_true1-5] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true0-y_score0-None-y type must be 'binary' or 'multiclass', got 'continuous'] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true1-y_score1-None-Number of classes in 'y_true' \\(4\\) not equal to the number of classes in 'y_score' \\(3\\).] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true2-y_score2-labels2-Parameter 'labels' must be unique.] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true3-y_score3-labels3-Parameter 'labels' must be ordered.] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true4-y_score4-labels4-Number of given labels \\(4\\) not equal to the number of classes in 'y_score' \\(3\\).] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true5-y_score5-labels5-'y_true' contains labels not in parameter 'labels'.] +PASSED sklearn/metrics/tests/test_ranking.py::test_top_k_accuracy_score_error[y_true6-y_score6-None-`y_true` is binary while y_score is 2d with 3 classes. If `y_true` does not contain all the labels, `labels` must be provided] +PASSED sklearn/metrics/tests/test_ranking.py::test_label_ranking_avg_precision_score_should_allow_csr_matrix_for_y_true_input +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes0-average_precision_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes0-det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes0-precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes0-roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes1-average_precision_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes1-det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes1-precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes1-roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes2-average_precision_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes2-det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes2-precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes2-roc_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes3-average_precision_score] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes3-det_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes3-precision_recall_curve] +PASSED sklearn/metrics/tests/test_ranking.py::test_ranking_metric_pos_label_types[classes3-roc_curve] +FAILED sklearn/metrics/tests/test_ranking.py::test_roc_curve_drop_intermediate - AssertionError: +FAILED sklearn/metrics/tests/test_ranking.py::test_roc_curve_with_probablity_estimates[42] - AssertionError: assert False +================== 2 failed, 203 passed, 3 warnings in 1.07s =================== ++ : '>>>>> End Test Output' ++ git checkout e886ce4e1444c61b865e7839c9cff5464ee20ace sklearn/metrics/tests/test_ranking.py +Updated 1 path from 397f77cbc diff --git a/verify_logs/scikit-learn__scikit-learn-26323_log.txt b/verify_logs/scikit-learn__scikit-learn-26323_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..eaa51dc501650e240ec13a54e69d57dc913b6e9f --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-26323_log.txt @@ -0,0 +1,1056 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sklearn/compose/_column_transformer.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 634eed6fcd9689283627d0064e8bc043ceb5de18 +Author: SWE-bench +Date: Wed Sep 10 15:57:59 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 586f4318ffcdfbd9a1093f35ad43e81983740b66 +diff --git a/sklearn/compose/_column_transformer.py b/sklearn/compose/_column_transformer.py +index 4eddd12b1..c79c2495a 100644 +--- a/sklearn/compose/_column_transformer.py ++++ b/sklearn/compose/_column_transformer.py +@@ -303,6 +303,10 @@ class ColumnTransformer(TransformerMixin, _BaseComposition): + for trans in transformers: + _safe_set_output(trans, transform=transform) + ++ # also set the output configuration for the remainder transformer ++ if not isinstance(self.remainder, str): ++ _safe_set_output(self.remainder, transform=transform) ++ + return self + + def get_params(self, deep=True): ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval '. "/opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh" +PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ . /opt/miniconda3/envs/testbed/etc/conda/deactivate.d/libglib_deactivate.sh +++++ export GSETTINGS_SCHEMA_DIR= +++++ GSETTINGS_SCHEMA_DIR= +++++ unset GSETTINGS_SCHEMA_DIR_CONDA_BACKUP +++++ '[' -z ']' +++++ unset GSETTINGS_SCHEMA_DIR ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\'' +. "/opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh"' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ . /opt/miniconda3/envs/testbed/etc/conda/activate.d/libglib_activate.sh ++++ export GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= ++++ export GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++++ GSETTINGS_SCHEMA_DIR=/opt/miniconda3/envs/testbed/share/glib-2.0/schemas ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 24.2 from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pip (python 3.9) +Obtaining file:///testbed + Preparing metadata (setup.py): started + Running command python setup.py egg_info + Partial import of sklearn during the build process. + running egg_info + creating /tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/SOURCES.txt' + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file '/tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-50q5r1gh/scikit_learn.egg-info/SOURCES.txt' + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: numpy>=1.17.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.26.4) +Requirement already satisfied: scipy>=1.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.13.0) +Requirement already satisfied: joblib>=1.1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (1.4.2) +Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from scikit-learn==1.3.dev0) (3.5.0) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 1.3.dev0 + Uninstalling scikit-learn-1.3.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-1.3.dev0 + DEPRECATION: Legacy editable install of scikit-learn==1.3.dev0 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for scikit-learn + Running command python setup.py develop + Partial import of sklearn during the build process. + running develop + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/command/develop.py:41: EasyInstallDeprecationWarning: easy_install command is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` and ``easy_install``. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://github.com/pypa/setuptools/issues/917 for details. + ******************************************************************************** + + !! + easy_install.initialize_options(self) + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. + !! + + ******************************************************************************** + Please avoid running ``setup.py`` directly. + Instead, use pypa/build, pypa/installer or other + standards-based tools. + + See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. + ******************************************************************************** + + !! + self.initialize_options() + running egg_info + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/npy_math.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative + dependency /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + warning: no previously-included files matching '*' found under directory 'asv_benchmarks' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory 'build_tools' + warning: no previously-included files matching '*' found under directory 'maint_tools' + warning: no previously-included files matching '*' found under directory 'benchmarks' + warning: no previously-included files matching '*' found under directory '.binder' + warning: no previously-included files matching '*' found under directory '.circleci' + warning: no previously-included files found matching '.cirrus.star' + warning: no previously-included files found matching '.codecov.yml' + warning: no previously-included files found matching '.git-blame-ignore-revs' + warning: no previously-included files found matching '.mailmap' + warning: no previously-included files found matching '.pre-commit-config.yaml' + warning: no previously-included files found matching 'azure-pipelines.yml' + warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' + warning: no previously-included files found matching 'CONTRIBUTING.md' + warning: no previously-included files found matching 'SECURITY.md' + warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + running build_clib + building 'libsvm-skl' library + building 'liblinear-skl' library + Creating /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 1.3.dev0 to easy-install.pth file + + Installed /testbed +Successfully installed scikit-learn +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/70/7a/be4bd8bcbb24ea475856dd68159d78b03b2bb53dae369f69c9606b8888f5/pip-26.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/73/7e/d2b04004e1068ad4fdfa2f227b839b5d03e602e47cdbbf49de71137c9546/pip-26.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/3a/eb/fea4d1d51c49832120f7f285d07306db3960f423a2612c6057caf3e8196f/pip-26.1.1-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/b6/48/cb9b7a682f6fe01a4221e1728941dd4ac3cd9090a17db3779d6ff490b602/pip-26.1.1.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/5d/95/6b5cb3461ea5673ba0995989746db58eb18b91b54dbf331e72f569540946/pip-26.1.2-py3-none-any.whl (from https://pypi.org/simple/pip/) (requires-python:>=3.10) + Link requires a different Python (3.9.21 not in: '>=3.10'): https://files.pythonhosted.org/packages/01/91/47e7d486260f618783899587af63ccf7980fb60245c3e63dd4571c6b57ad/pip-26.1.2.tar.gz (from https://pypi.org/simple/pip/) (requires-python:>=3.10) ++ git checkout 586f4318ffcdfbd9a1093f35ad43e81983740b66 sklearn/compose/tests/test_column_transformer.py +Updated 0 paths from cec545222 ++ git apply -v - +Checking patch sklearn/compose/tests/test_column_transformer.py... +Applied patch sklearn/compose/tests/test_column_transformer.py cleanly. ++ : '>>>>> Start Test Output' ++ pytest -rA sklearn/compose/tests/test_column_transformer.py +============================= test session starts ============================== +platform linux -- Python 3.9.21, pytest-7.4.4, pluggy-1.5.0 +rootdir: /testbed +configfile: setup.cfg +collected 189 items + +sklearn/compose/tests/test_column_transformer.py ....................... [ 12%] +........................................................................ [ 50%] +........................................................................ [ 88%] +...................... [100%] + +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_tuple_transformers_parameter +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_dataframe +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-list-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-list-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-bool-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-bool-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-bool_int-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[False-bool_int-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-list-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-list-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-bool-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-bool-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-bool_int-pandas] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_empty_columns[True-bool_int-numpy] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_output_indices +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_output_indices_df +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_sparse_array +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_list +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_sparse_stacking +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_mixed_cols_sparse +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_sparse_threshold +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_error_msg_1D +PASSED sklearn/compose/tests/test_column_transformer.py::test_2D_transformer_output +PASSED sklearn/compose/tests/test_column_transformer.py::test_2D_transformer_output_pandas +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_invalid_columns[drop] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_invalid_columns[passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_invalid_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_transformer_pandas +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_transformer_kwargs +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_transformer_remainder_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_get_set_params +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_named_estimators +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_cloning +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_get_feature_names +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_special_strings +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_numpy[key0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_numpy[key1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_numpy[key2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_numpy[key3] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key3] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[pd-index] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key5] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key6] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key7] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_pandas[key8] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_transformer[key0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_transformer[key1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_transformer[key2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_remainder_transformer[key3] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_no_remaining_remainder_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_drops_all_remainder_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_sparse_remainder_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_drop_all_sparse_remainder_transformer +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_get_set_params_with_remainder +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_no_estimators +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est0-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est1-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est2-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est3-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est4-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est5-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing trans2.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit-est6-\\[ColumnTransformer\\].*\\(1 of 1\\) Processing trans1.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est0-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est1-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est2-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est3-\\[ColumnTransformer\\].*\\(1 of 3\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 3\\) Processing trans2.* total=.*\\n\\[ColumnTransformer\\].*\\(3 of 3\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est4-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing remainder.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est5-\\[ColumnTransformer\\].*\\(1 of 2\\) Processing trans1.* total=.*\\n\\[ColumnTransformer\\].*\\(2 of 2\\) Processing trans2.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_verbose[fit_transform-est6-\\[ColumnTransformer\\].*\\(1 of 1\\) Processing trans1.* total=.*\\n$] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_no_estimators_set_params +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_callable_specifier +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_callable_specifier_dataframe +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_negative_column_indexes +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_mask_indexing[asarray] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_mask_indexing[csr_matrix] +PASSED sklearn/compose/tests/test_column_transformer.py::test_n_features_in +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols0-None-number-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols1-None-None-object] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols2-None-include2-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols3-None-include3-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols4-None-object-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols5-None-float-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols6-at$-include6-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols7-None-include7-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols8-^col_int-include8-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols9-float|str-None-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols10-^col_s-None-exclude10] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols11-str$-float-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_with_select_dtypes[cols12-None-include12-None] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_with_make_column_selector +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_error +PASSED sklearn/compose/tests/test_column_transformer.py::test_make_column_selector_pickle +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_empty_columns[list] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_empty_columns[array] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_empty_columns[callable] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[selector0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[selector2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[selector4] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_pandas[2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_non_pandas[selector0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_non_pandas[0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_non_pandas[selector2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_out_non_pandas[1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder[passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder[remainder1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder_drop +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder_fitted_pandas[passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder_fitted_pandas[remainder1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder_fitted_numpy[passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_sk_visual_block_remainder_fitted_numpy[remainder1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[remainder0-first] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[remainder0-second] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[remainder0-0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[remainder0-1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[passthrough-first] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[passthrough-second] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[passthrough-0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[passthrough-1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[drop-first] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[drop-second] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[drop-0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_reordered_column_names_remainder[drop-1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_name_validation_missing_columns_drop_passthough +PASSED sklearn/compose/tests/test_column_transformer.py::test_feature_names_in_ +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers0-passthrough-expected_names0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers1-drop-expected_names1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers2-passthrough-expected_names2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers3-passthrough-expected_names3] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers4-drop-expected_names4] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers5-passthrough-expected_names5] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers6-drop-expected_names6] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers7-drop-expected_names7] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers8-passthrough-expected_names8] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers9-passthrough-expected_names9] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers10-drop-expected_names10] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers11-passthrough-expected_names11] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_true[transformers12-passthrough-expected_names12] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers0-passthrough-expected_names0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers1-drop-expected_names1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers2-passthrough-expected_names2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers3-passthrough-expected_names3] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers4-drop-expected_names4] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers5-passthrough-expected_names5] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers6-drop-expected_names6] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers7-passthrough-expected_names7] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers8-passthrough-expected_names8] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers9-drop-expected_names9] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers10-passthrough-expected_names10] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers11-passthrough-expected_names11] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers12-drop-expected_names12] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false[transformers13-drop-expected_names13] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers0-drop-['b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers1-drop-['c']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers2-passthrough-['a']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers3-passthrough-['a']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers4-drop-['b', 'c']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers5-passthrough-['a']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers6-passthrough-['a', 'b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers7-passthrough-['pca0', 'pca1', 'pca2', 'pca3', 'pca4', ...]] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers8-passthrough-['a', 'b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers9-passthrough-['a', 'b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers10-passthrough-['a', 'b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_verbose_feature_names_out_false_errors[transformers11-passthrough-['a', 'b']] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_set_output[drop-True] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_set_output[drop-False] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_set_output[passthrough-True] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transformer_set_output[passthrough-False] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_mixed[True-drop] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_mixed[True-passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_mixed[False-drop] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_mixed[False-passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_after_fitting[drop] +PASSED sklearn/compose/tests/test_column_transformer.py::test_column_transform_set_output_after_fitting[passthrough] +PASSED sklearn/compose/tests/test_column_transformer.py::test_transformers_with_pandas_out_but_not_feature_names_out[trans_10-expected_verbose_names0-expected_non_verbose_names0] +PASSED sklearn/compose/tests/test_column_transformer.py::test_transformers_with_pandas_out_but_not_feature_names_out[drop-expected_verbose_names1-expected_non_verbose_names1] +PASSED sklearn/compose/tests/test_column_transformer.py::test_transformers_with_pandas_out_but_not_feature_names_out[passthrough-expected_verbose_names2-expected_non_verbose_names2] +PASSED sklearn/compose/tests/test_column_transformer.py::test_empty_selection_pandas_output[list] +PASSED sklearn/compose/tests/test_column_transformer.py::test_empty_selection_pandas_output[bool] +PASSED sklearn/compose/tests/test_column_transformer.py::test_empty_selection_pandas_output[bool_int] +PASSED sklearn/compose/tests/test_column_transformer.py::test_raise_error_if_index_not_aligned +PASSED sklearn/compose/tests/test_column_transformer.py::test_remainder_set_output +============================= 189 passed in 0.93s ============================== ++ : '>>>>> End Test Output' ++ git checkout 586f4318ffcdfbd9a1093f35ad43e81983740b66 sklearn/compose/tests/test_column_transformer.py +Updated 1 path from cec545222 diff --git a/verify_logs/scikit-learn__scikit-learn-9288_log.txt b/verify_logs/scikit-learn__scikit-learn-9288_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..1b1165b0579c1fc2727ebf5924dc966e83881bda --- /dev/null +++ b/verify_logs/scikit-learn__scikit-learn-9288_log.txt @@ -0,0 +1,634 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch main +nothing to commit, working tree clean ++ git show +commit ba7390946e3addd68f2626f3f4097e7f1ab10511 +Author: SWE-bench +Date: Wed Sep 10 16:00:03 2025 +0000 + + SWE-bench ++ git -c core.fileMode=false diff 3eacf948e0f95ef957862568d87ce082f378e186 ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -v --no-use-pep517 --no-build-isolation -e . +Using pip 21.2.2 from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/pip (python 3.6) +Obtaining file:///testbed + Running command python setup.py egg_info + running egg_info + creating /tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info + writing /tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/PKG-INFO + writing dependency_links to /tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/dependency_links.txt + writing requirements to /tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/requires.txt + writing top-level names to /tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/top_level.txt + writing manifest file '/tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/SOURCES.txt' + reading manifest file '/tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file '/tmp/pip-pip-egg-info-55qrst5i/scikit_learn.egg-info/SOURCES.txt' + Partial import of sklearn during the build process. +Requirement already satisfied: numpy>=1.11.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.19.2) +Requirement already satisfied: scipy>=0.17.0 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.5.2) +Requirement already satisfied: joblib>=0.11 in /opt/miniconda3/envs/testbed/lib/python3.6/site-packages (from scikit-learn==0.22.dev0) (1.1.1) +Installing collected packages: scikit-learn + Attempting uninstall: scikit-learn + Found existing installation: scikit-learn 0.22.dev0 + Uninstalling scikit-learn-0.22.dev0: + Removing file or directory /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link + Removing pth entries from /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/easy-install.pth: + Removing entry: /testbed + Successfully uninstalled scikit-learn-0.22.dev0 + Running setup.py develop for scikit-learn + Running command /opt/miniconda3/envs/testbed/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/testbed/setup.py'"'"'; __file__='"'"'/testbed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps + C compiler: gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC + + compile options: '-c' + extra options: '-fopenmp' + gcc: test_openmp.c + gcc -pthread -B /opt/miniconda3/envs/testbed/compiler_compat -Wl,--sysroot=/ objects/test_openmp.o -o test_openmp -fopenmp + running develop + running build_scripts + running egg_info + running build_src + build_src + building library "libsvm-skl" sources + building extension "sklearn.__check_build._check_build" sources + building extension "sklearn.preprocessing._csr_polynomial_expansion" sources + building extension "sklearn.cluster._dbscan_inner" sources + building extension "sklearn.cluster._hierarchical" sources + building extension "sklearn.cluster._k_means_elkan" sources + building extension "sklearn.cluster._k_means" sources + building extension "sklearn.datasets._svmlight_format" sources + building extension "sklearn.decomposition._online_lda" sources + building extension "sklearn.decomposition.cdnmf_fast" sources + building extension "sklearn.ensemble._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._gradient_boosting" sources + building extension "sklearn.ensemble._hist_gradient_boosting.histogram" sources + building extension "sklearn.ensemble._hist_gradient_boosting.splitting" sources + building extension "sklearn.ensemble._hist_gradient_boosting._binning" sources + building extension "sklearn.ensemble._hist_gradient_boosting._predictor" sources + building extension "sklearn.ensemble._hist_gradient_boosting._loss" sources + building extension "sklearn.ensemble._hist_gradient_boosting.types" sources + building extension "sklearn.ensemble._hist_gradient_boosting.utils" sources + building extension "sklearn.feature_extraction._hashing" sources + building extension "sklearn.manifold._utils" sources + building extension "sklearn.manifold._barnes_hut_tsne" sources + building extension "sklearn.metrics.cluster.expected_mutual_info_fast" sources + building extension "sklearn.metrics.pairwise_fast" sources + building extension "sklearn.neighbors.ball_tree" sources + building extension "sklearn.neighbors.kd_tree" sources + building extension "sklearn.neighbors.dist_metrics" sources + building extension "sklearn.neighbors.typedefs" sources + building extension "sklearn.neighbors.quad_tree" sources + building extension "sklearn.tree._tree" sources + building extension "sklearn.tree._splitter" sources + building extension "sklearn.tree._criterion" sources + building extension "sklearn.tree._utils" sources + building extension "sklearn.utils.sparsefuncs_fast" sources + building extension "sklearn.utils._cython_blas" sources + building extension "sklearn.utils.arrayfuncs" sources + building extension "sklearn.utils.murmurhash" sources + building extension "sklearn.utils.graph_shortest_path" sources + building extension "sklearn.utils.fast_dict" sources + building extension "sklearn.utils.seq_dataset" sources + building extension "sklearn.utils.weight_vector" sources + building extension "sklearn.utils._random" sources + building extension "sklearn.utils._logistic_sigmoid" sources + building extension "sklearn.svm.libsvm" sources + building extension "sklearn.svm.liblinear" sources + building extension "sklearn.svm.libsvm_sparse" sources + building extension "sklearn.linear_model.cd_fast" sources + building extension "sklearn.linear_model.sgd_fast" sources + building extension "sklearn.linear_model.sag_fast" sources + building extension "sklearn._isotonic" sources + building data_files sources + build_src: building npy-pkg config files + writing scikit_learn.egg-info/PKG-INFO + writing dependency_links to scikit_learn.egg-info/dependency_links.txt + writing requirements to scikit_learn.egg-info/requires.txt + writing top-level names to scikit_learn.egg-info/top_level.txt + reading manifest file 'scikit_learn.egg-info/SOURCES.txt' + reading manifest template 'MANIFEST.in' + adding license file 'COPYING' + writing manifest file 'scikit_learn.egg-info/SOURCES.txt' + running build_ext + customize UnixCCompiler + customize UnixCCompiler using build_clib + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + customize UnixCCompiler + customize UnixCCompiler using build_ext_subclass + Creating /opt/miniconda3/envs/testbed/lib/python3.6/site-packages/scikit-learn.egg-link (link to .) + Adding scikit-learn 0.22.dev0 to easy-install.pth file + + Installed /testbed + Partial import of sklearn during the build process. +Successfully installed scikit-learn-0.22.dev0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. 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[ 27%] +........................................................................ [ 85%] +.................F [100%] + +=================================== FAILURES =================================== +__________________ test_result_of_kmeans_equal_in_diff_n_jobs __________________ + + def test_result_of_kmeans_equal_in_diff_n_jobs(): + # PR 9288 + rnd = np.random.RandomState(0) + X = rnd.normal(size=(50, 10)) + + result_1 = KMeans(n_clusters=3, random_state=0, n_jobs=1).fit(X).labels_ + result_2 = KMeans(n_clusters=3, random_state=0, n_jobs=2).fit(X).labels_ +> assert_array_equal(result_1, result_2) +E AssertionError: +E Arrays are not equal +E +E Mismatched elements: 39 / 50 (78%) +E Max absolute difference: 2 +E Max relative difference: 1. +E x: array([0, 2, 2, 1, 1, 1, 1, 1, 2, 0, 0, 0, 0, 2, 2, 2, 2, 1, 1, 2, 2, 0, +E 1, 2, 1, 1, 1, 1, 0, 1, 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 2, 1, +E 2, 2, 1, 2, 2, 2], dtype=int32) +E y: array([0, 0, 1, 2, 0, 2, 2, 2, 1, 0, 0, 0, 0, 0, 1, 2, 0, 0, 2, 2, 0, 2, +E 0, 0, 2, 0, 0, 0, 0, 0, 1, 2, 2, 0, 2, 0, 0, 0, 2, 2, 0, 1, 0, 0, +E 0, 0, 0, 1, 2, 1], dtype=int32) + +sklearn/cluster/tests/test_k_means.py:963: AssertionError +==================================== PASSES ==================================== +=========================== short test summary info ============================ +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float32-dense-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float32-dense-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float32-sparse-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float64-dense-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float64-dense-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_kmeans_results[float64-sparse-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_elkan_results[normal] +PASSED sklearn/cluster/tests/test_k_means.py::test_elkan_results[blobs] +PASSED sklearn/cluster/tests/test_k_means.py::test_labels_assignment_and_inertia +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_update_consistency +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_new_centers +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_plus_plus_init_2_jobs +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_precompute_distances_flag +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_plus_plus_init_not_precomputed +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_random_init_not_precomputed +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[random-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[random-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[k-means++-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[k-means++-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[init2-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init[init2-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_n_init +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_explicit_init_shape[KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_explicit_init_shape[MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fortran_aligned_data +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-asarray-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-asarray-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-asarray-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-asarray-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-csr_matrix-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-csr_matrix-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-csr_matrix-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[0-2-1e-07-csr_matrix-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-asarray-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-asarray-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-asarray-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-asarray-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-csr_matrix-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-csr_matrix-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-csr_matrix-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[1-2-0.1-csr_matrix-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-asarray-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-asarray-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-asarray-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-asarray-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-csr_matrix-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-csr_matrix-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-csr_matrix-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[3-300-1e-07-csr_matrix-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-asarray-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-asarray-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-asarray-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-asarray-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-csr_matrix-float32-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-csr_matrix-float32-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-csr_matrix-float64-full] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_fit_predict[4-300-0.1-csr_matrix-float64-elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_mb_kmeans_verbose +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_init_with_large_k +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init_multiple_runs_with_explicit_centers +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[random-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[random-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[k-means++-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[k-means++-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[init2-dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_k_means_init[init2-sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_sensible_reassign_fit +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_sensible_reassign_partial_fit +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_reassign +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_with_many_reassignments +PASSED sklearn/cluster/tests/test_k_means.py::test_sparse_mb_k_means_callable_init +PASSED sklearn/cluster/tests/test_k_means.py::test_mini_batch_k_means_random_init_partial_fit +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_default_init_size +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_tol +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_set_init_size +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_invalid_init[KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_invalid_init[MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_copyx +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_non_collapsed +PASSED sklearn/cluster/tests/test_k_means.py::test_score[full] +PASSED sklearn/cluster/tests/test_k_means.py::test_score[elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[random-dense-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[random-dense-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[random-sparse-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[random-sparse-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[k-means++-dense-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[k-means++-dense-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[k-means++-sparse-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[k-means++-sparse-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[init2-dense-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[init2-dense-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[init2-sparse-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict[init2-sparse-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict_minibatch_dense_sparse[random] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict_minibatch_dense_sparse[k-means++] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict_minibatch_dense_sparse[init2] +PASSED sklearn/cluster/tests/test_k_means.py::test_int_input +PASSED sklearn/cluster/tests/test_k_means.py::test_transform +PASSED sklearn/cluster/tests/test_k_means.py::test_fit_transform +PASSED sklearn/cluster/tests/test_k_means.py::test_predict_equal_labels[full] +PASSED sklearn/cluster/tests/test_k_means.py::test_predict_equal_labels[elkan] +PASSED sklearn/cluster/tests/test_k_means.py::test_full_vs_elkan +PASSED sklearn/cluster/tests/test_k_means.py::test_n_init +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_function +PASSED sklearn/cluster/tests/test_k_means.py::test_x_squared_norms_init_centroids +PASSED sklearn/cluster/tests/test_k_means.py::test_max_iter_error +PASSED sklearn/cluster/tests/test_k_means.py::test_float_precision[False-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_float_precision[False-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_float_precision[True-KMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_float_precision[True-MiniBatchKMeans] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init_centers +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init_fitted_centers[dense] +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_init_fitted_centers[sparse] +PASSED sklearn/cluster/tests/test_k_means.py::test_sparse_validate_centers +PASSED sklearn/cluster/tests/test_k_means.py::test_less_centers_than_unique_points +PASSED sklearn/cluster/tests/test_k_means.py::test_weighted_vs_repeated +PASSED sklearn/cluster/tests/test_k_means.py::test_unit_weights_vs_no_weights +PASSED sklearn/cluster/tests/test_k_means.py::test_scaled_weights +PASSED sklearn/cluster/tests/test_k_means.py::test_sample_weight_length +PASSED sklearn/cluster/tests/test_k_means.py::test_check_normalize_sample_weight +PASSED sklearn/cluster/tests/test_k_means.py::test_iter_attribute +PASSED sklearn/cluster/tests/test_k_means.py::test_k_means_empty_cluster_relocated +PASSED sklearn/cluster/tests/test_k_means.py::test_minibatch_kmeans_partial_fit_int_data +FAILED sklearn/cluster/tests/test_k_means.py::test_result_of_kmeans_equal_in_diff_n_jobs +================= 1 failed, 123 passed, 15 warnings in 14.32s ================== ++ : '>>>>> End Test Output' ++ git checkout 3eacf948e0f95ef957862568d87ce082f378e186 sklearn/cluster/tests/test_k_means.py +Updated 1 path from 5e4b2c1ed diff --git a/verify_logs/sphinx-doc__sphinx-10323_log.txt b/verify_logs/sphinx-doc__sphinx-10323_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..9da6cbe261d25fa126af27b199b14f9d1c7a7110 --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10323_log.txt @@ -0,0 +1,832 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/directives/code.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit d08d31a4ac5267cb84dee0152382292f3fa4e64b +Author: SWE-bench +Date: Wed Sep 10 15:55:30 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index f0afd779b..30ca90275 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -28,7 +28,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -m pytest --durations 25 {posargs} ++ python -X dev -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ git -c core.fileMode=false diff 31eba1a76dd485dc633cae48227b46879eda5df4 +diff --git a/sphinx/directives/code.py b/sphinx/directives/code.py +index dc44ed314..4e2ba2d09 100644 +--- a/sphinx/directives/code.py ++++ b/sphinx/directives/code.py +@@ -224,9 +224,9 @@ class LiteralIncludeReader: + self.start_filter, + self.end_filter, + self.lines_filter, ++ self.dedent_filter, + self.prepend_filter, +- self.append_filter, +- self.dedent_filter] ++ self.append_filter] + lines = self.read_file(self.filename, location=location) + for func in filters: + lines = func(lines, location=location) +@@ -361,6 +361,18 @@ class LiteralIncludeReader: + return lines + + ++ ++def _preserve_leading_whitespace(value: str) -> str: ++ """ ++ Custom option converter that preserves leading whitespace. ++ ++ If the value starts with @, the leading whitespace is preserved. ++ The @ prefix is removed from the output. ++ """ ++ if value.startswith('@'): ++ return value[1:] # Remove the @ prefix, keep the rest including leading whitespace ++ return value ++ + class LiteralInclude(SphinxDirective): + """ + Like ``.. include:: :literal:``, but only warns if the include file is +@@ -387,8 +399,8 @@ class LiteralInclude(SphinxDirective): + 'end-before': directives.unchanged_required, + 'start-at': directives.unchanged_required, + 'end-at': directives.unchanged_required, +- 'prepend': directives.unchanged_required, +- 'append': directives.unchanged_required, ++ 'prepend': _preserve_leading_whitespace, ++ 'append': _preserve_leading_whitespace, + 'emphasize-lines': directives.unchanged_required, + 'caption': directives.unchanged, + 'class': directives.class_option, +diff --git a/tox.ini b/tox.ini +index f0afd779b..30ca90275 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -28,7 +28,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -m pytest --durations 25 {posargs} ++ python -X dev -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: Jinja2>=2.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (3.1.4) +Requirement already satisfied: Pygments>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.18.0) +Requirement already satisfied: docutils<0.18,>=0.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (0.17.1) +Requirement already satisfied: snowballstemmer>=1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.2.0) +Requirement already satisfied: babel>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (0.7.16) +Requirement already satisfied: imagesize in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.32.3) +Requirement already satisfied: packaging in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (24.1) +Requirement already satisfied: importlib-metadata>=4.4 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (8.5.0) +Requirement already satisfied: pytest in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (8.3.3) +Requirement already satisfied: pytest-cov in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (5.0.0) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (3.0.11) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.4->Sphinx==5.0.0.dev20260707) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=2.3->Sphinx==5.0.0.dev20260707) (3.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0.dev20260707) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0.dev20260707) (0.5.1) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==5.0.0.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==5.0.0.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==5.0.0.dev20260707) (2.0.2) +Requirement already satisfied: coverage>=5.2.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from coverage[toml]>=5.2.1->pytest-cov->Sphinx==5.0.0.dev20260707) (7.6.4) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 5.0.0.dev20250910 + Uninstalling Sphinx-5.0.0.dev20250910: + Successfully uninstalled Sphinx-5.0.0.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==5.0.0.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout 31eba1a76dd485dc633cae48227b46879eda5df4 tests/test_directive_code.py +Updated 0 paths from 221989e45 ++ git apply -v - +Checking patch tests/test_directive_code.py... +Applied patch tests/test_directive_code.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_directive_code.py +py39: commands[0]> python -X dev -m pytest -rA --durations 25 tests/test_directive_code.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-5.0.0+/d08d31a4a, docutils-0.17.1 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +plugins: cov-5.0.0 +collected 41 items + +tests/test_directive_code.py ......................................... [100%] + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a + +# warning: +WARNING: line number spec is out of range(1-13): '100-' + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/xml +# status: +Running Sphinx v5.0.0+/d08d31a4a +updating environment: [new config] 12 added, 0 changed, 0 removed +reading sources... [ 8%] caption reading sources... [ 16%] classes reading sources... [ 25%] dedent reading sources... [ 33%] emphasize reading sources... [ 41%] force reading sources... [ 50%] highlight reading sources... [ 58%] index reading sources... [ 66%] linenos reading sources... [ 75%] linenothreshold reading sources... [ 83%] namedblocks reading sources... [ 91%] py-decorators reading sources... [100%] python +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 8%] caption writing output... [ 16%] classes writing output... [ 25%] dedent writing output... [ 33%] emphasize writing output... [ 41%] force writing output... [ 50%] highlight writing output... [ 58%] index writing output... [ 66%] linenos writing output... [ 75%] linenothreshold writing output... [ 83%] namedblocks writing output... [ 91%] py-decorators writing output... [100%] python + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] force writing output... [100%] index +generating indices... genindex done +writing additional pages... search done +copying static files... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: +WARNING: search index couldn't be loaded, but not all documents will be built: the index will be incomplete. + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] caption writing output... [100%] index +generating indices... genindex done +writing additional pages... search done +copying static files... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/xml +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [100%] index + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/xml +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] index writing output... [100%] python + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] index writing output... [100%] linenos +generating indices... genindex done +writing additional pages... search done +copying static files... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [100%] index +generating indices... genindex done +writing additional pages... search done +copying static files... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/latex +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index caption classes dedent emphasize force highlight linenos linenothreshold namedblocks py-decorators python +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/xml +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] classes writing output... [100%] index + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/xml +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] index writing output... [100%] py-decorators + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: dummy +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/dummy +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] highlight writing output... [100%] index + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/html +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] index writing output... [100%] linenothreshold +generating indices... genindex done +writing additional pages... search done +copying static files... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: dummy +# srcdir: /tmp/pytest-of-root/pytest-0/directive-code +# outdir: /tmp/pytest-of-root/pytest-0/directive-code/_build/dummy +# status: +Running Sphinx v5.0.0+/d08d31a4a +loading pickled environment... done +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 50%] dedent writing output... [100%] index + +# warning: + +============================= slowest 25 durations ============================= +0.31s setup tests/test_directive_code.py::test_LiteralIncludeReader_lines_and_lineno_match2 +0.18s call tests/test_directive_code.py::test_literal_include_linenos +0.17s call tests/test_directive_code.py::test_code_block_caption_html +0.16s call tests/test_directive_code.py::test_literalinclude_caption_html +0.12s call tests/test_directive_code.py::test_force_option +0.11s call tests/test_directive_code.py::test_code_block_emphasize_latex +0.11s call tests/test_directive_code.py::test_code_block_namedlink_latex +0.10s call tests/test_directive_code.py::test_linenothreshold +0.09s call tests/test_directive_code.py::test_literalinclude_file_whole_of_emptyline +0.08s call tests/test_directive_code.py::test_literalinclude_caption_latex +0.07s call tests/test_directive_code.py::test_code_block +0.05s setup tests/test_directive_code.py::test_code_block_caption_latex +0.05s setup tests/test_directive_code.py::test_literalinclude_namedlink_latex +0.04s call tests/test_directive_code.py::test_literalinclude_namedlink_latex +0.04s call tests/test_directive_code.py::test_code_block_caption_latex +0.03s call tests/test_directive_code.py::test_literalinclude_classes +0.02s call tests/test_directive_code.py::test_literal_include +0.02s call tests/test_directive_code.py::test_literal_include_block_start_with_comment_or_brank +0.01s call tests/test_directive_code.py::test_literalinclude_pydecorators +0.01s setup tests/test_directive_code.py::test_force_option +0.01s setup tests/test_directive_code.py::test_linenothreshold +0.01s setup tests/test_directive_code.py::test_literalinclude_caption_html +0.01s setup tests/test_directive_code.py::test_LiteralIncludeReader_lines_and_lineno_match3 +0.01s setup tests/test_directive_code.py::test_literalinclude_classes +0.01s setup tests/test_directive_code.py::test_literalinclude_caption_latex +=========================== short test summary info ============================ +PASSED tests/test_directive_code.py::test_LiteralIncludeReader +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lineno_start +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_pyobject1 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_pyobject2 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_pyobject3 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_pyobject_and_lines +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lines1 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lines2 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lines_and_lineno_match1 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lines_and_lineno_match2 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_lines_and_lineno_match3 +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_start_at +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_start_after +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_start_after_and_lines +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_start_at_and_lines +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_missing_start_and_end +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_end_before +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_prepend +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_dedent +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_dedent_and_append_and_prepend +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_tabwidth +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_tabwidth_dedent +PASSED tests/test_directive_code.py::test_LiteralIncludeReader_diff +PASSED tests/test_directive_code.py::test_code_block +PASSED tests/test_directive_code.py::test_force_option +PASSED tests/test_directive_code.py::test_code_block_caption_html +PASSED tests/test_directive_code.py::test_code_block_caption_latex +PASSED tests/test_directive_code.py::test_code_block_namedlink_latex +PASSED tests/test_directive_code.py::test_code_block_emphasize_latex +PASSED tests/test_directive_code.py::test_literal_include +PASSED tests/test_directive_code.py::test_literal_include_block_start_with_comment_or_brank +PASSED tests/test_directive_code.py::test_literal_include_linenos +PASSED tests/test_directive_code.py::test_literalinclude_file_whole_of_emptyline +PASSED tests/test_directive_code.py::test_literalinclude_caption_html +PASSED tests/test_directive_code.py::test_literalinclude_caption_latex +PASSED tests/test_directive_code.py::test_literalinclude_namedlink_latex +PASSED tests/test_directive_code.py::test_literalinclude_classes +PASSED tests/test_directive_code.py::test_literalinclude_pydecorators +PASSED tests/test_directive_code.py::test_code_block_highlighted +PASSED tests/test_directive_code.py::test_linenothreshold +PASSED tests/test_directive_code.py::test_code_block_dedent +============================== 41 passed in 1.98s ============================== +py39: exit 0 (2.41 seconds) /testbed> python -X dev -m pytest -rA --durations 25 tests/test_directive_code.py pid=109 + py39: OK (2.41=setup[0.01]+cmd[2.41] seconds) + congratulations :) (2.48 seconds) ++ : '>>>>> End Test Output' ++ git checkout 31eba1a76dd485dc633cae48227b46879eda5df4 tests/test_directive_code.py +Updated 1 path from 221989e45 diff --git a/verify_logs/sphinx-doc__sphinx-10435_log.txt b/verify_logs/sphinx-doc__sphinx-10435_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..1f06ebe491c5831eea11addd88a53ec0b84ce44c --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10435_log.txt @@ -0,0 +1,16627 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/writers/latex.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit de6b5a64314c605ceb37cbabb6936f57c3a1b412 +Author: SWE-bench +Date: Wed Sep 10 15:58:25 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ git -c core.fileMode=false diff f1061c012e214f16fd8790dec3c283d787e3daa8 +diff --git a/sphinx/writers/latex.py b/sphinx/writers/latex.py +index e0c7d56f8..b43e9200c 100644 +--- a/sphinx/writers/latex.py ++++ b/sphinx/writers/latex.py +@@ -1711,8 +1711,15 @@ class LaTeXTranslator(SphinxTranslator): + # https://github.com/pygments/pygments/pull/1343 + hlcode = hlcode.replace(r'\begin{Verbatim}[commandchars=\\\{\}]', + r'\sphinxcode{\sphinxupquote{') +- # get consistent trailer +- hlcode = hlcode.rstrip()[:-14] # strip \end{Verbatim} ++ # get consistent trailer - also remove leading whitespace ++ hlcode = hlcode.rstrip('\n') ++ if hlcode.endswith('\n\end{Verbatim}'): ++ hlcode = hlcode[:-15] ++ elif hlcode.endswith('\end{Verbatim}'): ++ hlcode = hlcode[:-14] ++ # Remove leading newline after opening tag ++ if '\n' in hlcode: ++ hlcode = hlcode.split('\n', 1)[0] + hlcode.split('\n', 1)[1] + self.body.append(hlcode) + self.body.append('}}') + raise nodes.SkipNode +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: Jinja2>=2.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (3.1.4) +Requirement already satisfied: Pygments>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.18.0) +Requirement already satisfied: docutils<0.19,>=0.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (0.18.1) +Requirement already satisfied: snowballstemmer>=1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.2.0) +Requirement already satisfied: babel>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (0.7.16) +Requirement already satisfied: imagesize in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (2.32.3) +Requirement already satisfied: packaging in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (24.1) +Requirement already satisfied: importlib-metadata>=4.4 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0.dev20260707) (3.0.11) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.4->Sphinx==5.0.0.dev20260707) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=2.3->Sphinx==5.0.0.dev20260707) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0.dev20260707) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0.dev20260707) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0.dev20260707) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0.dev20260707) (0.5.1) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 5.0.0.dev20250910 + Uninstalling Sphinx-5.0.0.dev20250910: + Successfully uninstalled Sphinx-5.0.0.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==5.0.0.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout f1061c012e214f16fd8790dec3c283d787e3daa8 tests/test_build_latex.py +Updated 0 paths from 5f90f2f52 ++ git apply -v - +Checking patch tests/test_build_latex.py... +Applied patch tests/test_build_latex.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_build_latex.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_build_latex.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-5.0.0+/de6b5a643, docutils-0.18.1 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +collected 83 items + +tests/test_build_latex.py ssssss........................................ [ 55%] +...........s.................s......F [100%] + +=================================== FAILURES =================================== +_____________________________ test_latex_code_role _____________________________ + +app = + + @pytest.mark.sphinx('latex', testroot='reST-code-role') + def test_latex_code_role(app): + app.build() + content = (app.outdir / 'python.tex').read_text() +  + common_content = ( + r'\PYG{k}{def} ' + r'\PYG{n+nf}{foo}' + r'\PYG{p}{(}' + r'\PYG{l+m+mi}{1} ' + r'\PYG{o}{+} ' + r'\PYG{l+m+mi}{2} ' + r'\PYG{o}{+} ' + r'\PYG{k+kc}{None} ' + r'\PYG{o}{+} ' + r'\PYG{l+s+s2}{\PYGZdq{}}' + r'\PYG{l+s+s2}{abc}' + r'\PYG{l+s+s2}{\PYGZdq{}}' + r'\PYG{p}{)}' + r'\PYG{p}{:} ' + r'\PYG{k}{pass}') +> assert (r'Inline \sphinxcode{\sphinxupquote{%' + '\n' + + common_content + '%\n}} code block') in content +E AssertionError: assert ((('Inline \\sphinxcode{\\sphinxupquote{%' + '\n') + '\\PYG{k}{def} \\PYG{n+nf}{foo}\\PYG{p}{(}\\PYG{l+m+mi}{1} \\PYG{o}{+} \\PYG{l+m+mi}{2} \\PYG{o}{+} \\PYG{k+kc}{None} \\PYG{o}{+} \\PYG{l+s+s2}{\\PYGZdq{}}\\PYG{l+s+s2}{abc}\\PYG{l+s+s2}{\\PYGZdq{}}\\PYG{p}{)}\\PYG{p}{:} \\PYG{k}{pass}') + '%\n}} code block') in '%% Generated by Sphinx.\n\\def\\sphinxdocclass{report}\n\\documentclass[letterpaper,10pt,english]{sphinxmanual}\n\\if...G{p}{:} \\PYG{k}{pass}\n\\end{sphinxVerbatim}\n\n\n\n\\renewcommand{\\indexname}{Index}\n\\printindex\n\\end{document}' + +tests/test_build_latex.py:1626: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/reST-code-role +# outdir: /tmp/pytest-of-root/pytest-0/reST-code-role/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [mo]: targets for 0 po files that are out of date +building [latex]: all documents +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done +build succeeded. + +The LaTeX files are in ../tmp/pytest-of-root/pytest-0/reST-code-role/_build/latex. +Run 'make' in that directory to run these through (pdf)latex +(use `make latexpdf' here to do that automatically). + +# warning: + +=============================== warnings summary =============================== +sphinx/writers/latex.py:1716 + /testbed/sphinx/writers/latex.py:1716: DeprecationWarning: invalid escape sequence \e + if hlcode.endswith('\n\end{Verbatim}'): + +sphinx/writers/latex.py:1718 + /testbed/sphinx/writers/latex.py:1718: DeprecationWarning: invalid escape sequence \e + elif hlcode.endswith('\end{Verbatim}'): + +-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 15 added, 0 changed, 0 removed +reading sources... [ 6%] autodoc reading sources... [ 13%] bom reading sources... [ 20%] extapi reading sources... [ 26%] extensions reading sources... [ 33%] footnote reading sources... [ 40%] images reading sources... [ 46%] includes reading sources... [ 53%] index reading sources... [ 60%] lists reading sources... [ 66%] markup reading sources... [ 73%] math reading sources... [ 80%] objects reading sources... [ 86%] otherext reading sources... [ 93%] subdir/images reading sources... [100%] subdir/includes +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing sphinxtests.tex... index extapi images subdir/images subdir/includes includes markup objects bom math autodoc extensions footnote lists otherext +resolving references... +done +writing... done +copying images... [ 12%] img.png copying images... [ 25%] subdir/img.png copying images... [ 37%] img.pdf copying images... [ 50%] https://www.python.org/static/img/python-logo.png copying images... [ 62%] subdir/simg.png copying images... [ 75%] svgimg.pdf copying images... [ 87%] img.foo.png copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done +copying additional files...  svgimg.svgdone + +# warning: +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class:1: WARNING: duplicate object description of autodoc_target.Class, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.attr:1: WARNING: duplicate object description of autodoc_target.Class.attr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.descr:1: WARNING: duplicate object description of autodoc_target.Class.descr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.docattr:1: WARNING: duplicate object description of autodoc_target.Class.docattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.excludemeth:1: WARNING: duplicate object description of autodoc_target.Class.excludemeth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_comment:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_comment, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_inline:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_inline, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_string:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_string, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.mdocattr:1: WARNING: duplicate object description of autodoc_target.Class.mdocattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.meth:1: WARNING: duplicate object description of autodoc_target.Class.meth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.moore:1: WARNING: duplicate object description of autodoc_target.Class.moore, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.prop:1: WARNING: duplicate object description of autodoc_target.Class.prop, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.skipmeth:1: WARNING: duplicate object description of autodoc_target.Class.skipmeth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.udocattr:1: WARNING: duplicate object description of autodoc_target.Class.udocattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.Class.docattr:1: WARNING: duplicate object description of autodoc_target.Class.docattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.InstAttCls:1: WARNING: duplicate object description of autodoc_target.InstAttCls, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.InstAttCls.ca1:1: WARNING: duplicate object description of autodoc_target.InstAttCls.ca1, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/autodoc_target.py:docstring of autodoc_target.InstAttCls.ia1:1: WARNING: duplicate object description of autodoc_target.InstAttCls.ia1, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root/objects.txt:143: WARNING: Unparseable C cross-reference: 'SphinxType *' +Invalid C declaration: Expected end of definition. [error at 11] + SphinxType * + -----------^ + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/warnings +# outdir: /tmp/pytest-of-root/pytest-0/warnings/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] undecodable +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [100%] svgimg.pdf +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/warnings/autodoc_fodder.py:docstring of autodoc_fodder.MarkupError:2: WARNING: Explicit markup ends without a blank line; unexpected unindent. +/tmp/pytest-of-root/pytest-0/warnings/index.rst:19: WARNING: Encoding 'utf-8-sig' used for reading included file '/tmp/pytest-of-root/pytest-0/warnings/wrongenc.inc' seems to be wrong, try giving an :encoding: option +/tmp/pytest-of-root/pytest-0/warnings/index.rst:27: WARNING: invalid single index entry '' +/tmp/pytest-of-root/pytest-0/warnings/index.rst:11: WARNING: image file not readable: foo.png +/tmp/pytest-of-root/pytest-0/warnings/index.rst:24: WARNING: download file not readable: /tmp/pytest-of-root/pytest-0/warnings/nonexisting.png +/tmp/pytest-of-root/pytest-0/warnings/undecodable.rst:3: WARNING: undecodable source characters, replacing with "?": b'here: >>>\xbb<<<' +/tmp/pytest-of-root/pytest-0/warnings/index.rst:41: WARNING: unknown option: &option +/tmp/pytest-of-root/pytest-0/warnings/index.rst:45: WARNING: citation not found: missing +/tmp/pytest-of-root/pytest-0/warnings/index.rst:14: WARNING: a suitable image for latex builder not found: foo.* +/tmp/pytest-of-root/pytest-0/warnings/index.rst:33: WARNING: Could not lex literal_block as "c". Highlighting skipped. + +_______________________________ test_latex_basic _______________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{report} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{The basic Sphinx documentation for testing} +\date{Jul 07, 2026} +\release{} +\author{Sphinx} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +___________________________ test_latex_basic_manual ____________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{title} +\date{Jul 07, 2026} +\release{} +\author{author} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +____________________________ test_latex_basic_howto ____________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{article} +\documentclass[letterpaper,10pt,english]{sphinxhowto} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{title} +\date{Jul 07, 2026} +\release{} +\author{author} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\section{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +__________________________ test_latex_basic_manual_ja __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{ujbook} +\documentclass[letterpaper,10pt,dvipdfmx]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} + + +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} + + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + + +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage[dvipdfm]{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} +\usepackage{pxjahyper} + + +\usepackage{sphinxmessages} + + + + +\title{title} +\date{2026年07月07日} +\release{} +\author{author} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{索引} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +__________________________ test_latex_basic_howto_ja ___________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{ujreport} +\documentclass[letterpaper,10pt,dvipdfmx]{sphinxhowto} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} + + +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} + + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + + +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage[dvipdfm]{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} +\usepackage{pxjahyper} + + +\usepackage{sphinxmessages} + + + + +\title{title} +\date{2026年07月07日} +\release{} +\author{author} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\section{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{索引} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_______________________________ test_latex_theme _______________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{book} +\documentclass[a4paper,12pt,english]{sphinxbook} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-theme +# outdir: /tmp/pytest-of-root/pytest-0/latex-theme/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +__________________________ test_latex_theme_papersize __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{book} +\documentclass[b5paper,9pt,english]{sphinxbook} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-theme +# outdir: /tmp/pytest-of-root/pytest-0/latex-theme/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +___________________________ test_latex_theme_options ___________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{book} +\documentclass[b5paper,9pt,english]{sphinxbook} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-theme +# outdir: /tmp/pytest-of-root/pytest-0/latex-theme/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_______________ test_latex_additional_settings_for_language_code _______________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{report} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} +%% turn off hyperref patch of \index as sphinx.xdy xindy module takes care of +%% suitable \hyperpage mark-up, working around hyperref-xindy incompatibility +\PassOptionsToPackage{hyperindex=false}{hyperref} +%% memoir class requires extra handling +\makeatletter\@ifclassloaded{memoir} +{\ifdefined\memhyperindexfalse\memhyperindexfalse\fi}{}\makeatother + +\PassOptionsToPackage{warn}{textcomp} + +\catcode`^^^^00a0\active\protected\def^^^^00a0{\leavevmode\nobreak\ } +\usepackage{cmap} +\usepackage{xeCJK} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\setmainfont{FreeSerif}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Italic, + BoldFont = *Bold, + BoldItalicFont = *BoldItalic +] +\setsansfont{FreeSans}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] +\setmonofont{FreeMono}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=\small,formatcom=\xeCJKVerbAddon} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{The basic Sphinx documentation for testing} +\date{2026 年 07 月 07 日} +\release{} +\author{Sphinx} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{索引} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [zh]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: rST localisation for language "zh" not found. +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: Language "zh" not supported: Docutils-generated text will be in English. + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [zh]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: rST localisation for language "zh" not found. +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: Language "zh" not supported: Docutils-generated text will be in English. + +___________________ test_latex_additional_settings_for_greek ___________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,greek]{report} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} +%% turn off hyperref patch of \index as sphinx.xdy xindy module takes care of +%% suitable \hyperpage mark-up, working around hyperref-xindy incompatibility +\PassOptionsToPackage{hyperindex=false}{hyperref} +%% memoir class requires extra handling +\makeatletter\@ifclassloaded{memoir} +{\ifdefined\memhyperindexfalse\memhyperindexfalse\fi}{}\makeatother + +\PassOptionsToPackage{warn}{textcomp} + +\catcode`^^^^00a0\active\protected\def^^^^00a0{\leavevmode\nobreak\ } +\usepackage{cmap} +\usepackage{fontspec} +\defaultfontfeatures[\rmfamily,\sffamily,\ttfamily]{} +\usepackage{amsmath,amssymb,amstext} +\usepackage{polyglossia} +\setmainlanguage{greek} + + + +\setmainfont{FreeSerif}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Italic, + BoldFont = *Bold, + BoldItalicFont = *BoldItalic +] +\setsansfont{FreeSans}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] +\setmonofont{FreeMono}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] + +\newfontfamily\greekfont{FreeSerif} +\newfontfamily\greekfontsf{FreeSans} +\newfontfamily\greekfonttt{FreeMono} + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=\small} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{The basic Sphinx documentation for testing} +\date{07 Ιουλίου 2026} +\release{} +\author{Sphinx} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{Ευρετήριο} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [el]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: rST localisation for language "el" not found. +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: Language "el" not supported: Docutils-generated text will be in English. + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [el]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: rST localisation for language "el" not found. +/tmp/pytest-of-root/pytest-0/basic/index.rst:: WARNING: Language "el" not supported: Docutils-generated text will be in English. + +______________________ test_latex_title_after_admonitions ______________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{report} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{test\sphinxhyphen{}latex\sphinxhyphen{}title} +\date{Jul 07, 2026} +\release{} +\author{Sphinx} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} +\begin{sphinxadmonition}{note}{Notice} + +\sphinxAtStartPar +This generates nodes.title node before first section title. +\end{sphinxadmonition} + + + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/latex-title/index.rst:8: WARNING: toctree contains reference to nonexisting document 'foo' +/tmp/pytest-of-root/pytest-0/latex-title/index.rst:8: WARNING: toctree contains reference to nonexisting document 'bar' + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-title +# outdir: /tmp/pytest-of-root/pytest-0/latex-title/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/latex-title/index.rst:8: WARNING: toctree contains reference to nonexisting document 'foo' +/tmp/pytest-of-root/pytest-0/latex-title/index.rst:8: WARNING: toctree contains reference to nonexisting document 'bar' + +______________________________ test_latex_release ______________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{report} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{The basic Sphinx documentation for testing} +\date{Jul 07, 2026} +\release{1.0\_0} +\author{Sphinx} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{Release} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Sphinx is a tool that makes it easy to create intelligent and beautiful +documentation for Python projects (or other documents consisting of multiple +reStructuredText sources), written by Georg Brandl. It was originally created +for the new Python documentation, and has excellent facilities for Python +project documentation, but C/C++ is supported as well, and more languages are +planned. + +\sphinxAtStartPar +Sphinx uses reStructuredText as its markup language, and many of its strengths +come from the power and straightforwardness of reStructuredText and its parsing +and translating suite, the Docutils. + + +\chapter{features} +\label{\detokenize{index:features}} +\sphinxAtStartPar +Among its features are the following: +\begin{itemize} +\item {} +\sphinxAtStartPar +Output formats: HTML (including derivative formats such as HTML Help, Epub +and Qt Help), plain text, manual pages and LaTeX or direct PDF output +using rst2pdf + +\item {} +\sphinxAtStartPar +Extensive cross\sphinxhyphen{}references: semantic markup and automatic links +for functions, classes, glossary terms and similar pieces of information + +\item {} +\sphinxAtStartPar +Hierarchical structure: easy definition of a document tree, with automatic +links to siblings, parents and children + +\item {} +\sphinxAtStartPar +Automatic indices: general index as well as a module index + +\item {} +\sphinxAtStartPar +Code handling: automatic highlighting using the Pygments highlighter + +\item {} +\sphinxAtStartPar +Flexible HTML output using the Jinja 2 templating engine + +\item {} +\sphinxAtStartPar +Various extensions are available, e.g. for automatic testing of snippets +and inclusion of appropriately formatted docstrings + +\item {} +\sphinxAtStartPar +Setuptools integration + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('release')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('release')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_________________________________ test_numref __________________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage[,numfigreset=1,mathnumfig]{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo:id1}}\label{\detokenize{foo::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.1}\label{\detokenize{foo:id6}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.1}\label{\detokenize{foo:id7}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id8}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Foo A} +\label{\detokenize{foo:foo-a}}\label{\detokenize{foo:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.2}\label{\detokenize{foo:id9}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.3}\label{\detokenize{foo:id10}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.2}\label{\detokenize{foo:id11}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.3}\label{\detokenize{foo:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 1.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id14}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}}\label{\detokenize{foo:id3}} + +\section{Foo B} +\label{\detokenize{foo:foo-b}}\label{\detokenize{foo:id4}} + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}}\label{\detokenize{foo:id5}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.4}\label{\detokenize{foo:id15}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.4}\label{\detokenize{foo:id16}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id17}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar:id1}}\label{\detokenize{bar::doc}} + +\section{Bar A} +\label{\detokenize{bar:bar-a}}\label{\detokenize{bar:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.1}\label{\detokenize{bar:id5}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.1}\label{\detokenize{bar:id6}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id7}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz:id1}}\label{\detokenize{baz::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.2}\label{\detokenize{baz:id2}}\label{\detokenize{baz:fig22}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.2}\label{\detokenize{baz:id3}}\label{\detokenize{baz:table22}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{baz:id4}}\label{\detokenize{baz:code22}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.3}\label{\detokenize{bar:id8}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.3}\label{\detokenize{bar:id9}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id10}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Bar B} +\label{\detokenize{bar:bar-b}}\label{\detokenize{bar:id3}} + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}}\label{\detokenize{bar:id4}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.4}\label{\detokenize{bar:id11}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.4}\label{\detokenize{bar:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1}\label{\detokenize{index:id1}}\label{\detokenize{index:fig1}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2}\label{\detokenize{index:id2}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1}\label{\detokenize{index:id3}}\label{\detokenize{index:table-1}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2}\label{\detokenize{index:id4}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id5}}\label{\detokenize{index:code-1}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id6}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\begin{itemize} +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Fig.\@ \ref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Fig.2.2 is \hyperref[\detokenize{baz:fig22}]{Figure\ref{\detokenize{baz:fig22}}} + +\item {} +\sphinxAtStartPar +Table.1 is \hyperref[\detokenize{index:table-1}]{Table \ref{\detokenize{index:table-1}}} + +\item {} +\sphinxAtStartPar +Table.2.2 is \hyperref[\detokenize{baz:table22}]{Table:\ref{\detokenize{baz:table22}}} + +\item {} +\sphinxAtStartPar +List.1 is \hyperref[\detokenize{index:code-1}]{Listing \ref{\detokenize{index:code-1}}} + +\item {} +\sphinxAtStartPar +List.2.2 is \hyperref[\detokenize{baz:code22}]{Code\sphinxhyphen{}\ref{\detokenize{baz:code22}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{Section \ref{\detokenize{foo:foo}}} + +\item {} +\sphinxAtStartPar +Section.2.1 is \hyperref[\detokenize{bar:bar-a}]{Section \ref{\detokenize{bar:bar-a}}} + +\item {} +\sphinxAtStartPar +Unnumbered section is \hyperref[\detokenize{index:index}]{Section \ref{\detokenize{index:index}}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 01: \sphinxcode{\sphinxupquote{invalid}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 02: \sphinxcode{\sphinxupquote{Fig \%s \%s}} + +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Fig.\ref{\detokenize{index:fig1}} \nameref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{Sect.\ref{\detokenize{foo:foo}} \nameref{\detokenize{foo:foo}}} + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsenglish{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsenglish{\renewcommand{\tablename}{Table }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsenglish{\renewcommand{\literalblockname}{Listing}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/numfig +# outdir: /tmp/pytest-of-root/pytest-0/numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +___________________________ test_numref_with_prefix1 ___________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage[,numfigreset=1,mathnumfig]{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo:id1}}\label{\detokenize{foo::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.1}\label{\detokenize{foo:id6}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.1}\label{\detokenize{foo:id7}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id8}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Foo A} +\label{\detokenize{foo:foo-a}}\label{\detokenize{foo:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.2}\label{\detokenize{foo:id9}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.3}\label{\detokenize{foo:id10}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.2}\label{\detokenize{foo:id11}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.3}\label{\detokenize{foo:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 1.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id14}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}}\label{\detokenize{foo:id3}} + +\section{Foo B} +\label{\detokenize{foo:foo-b}}\label{\detokenize{foo:id4}} + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}}\label{\detokenize{foo:id5}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.4}\label{\detokenize{foo:id15}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.4}\label{\detokenize{foo:id16}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id17}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar:id1}}\label{\detokenize{bar::doc}} + +\section{Bar A} +\label{\detokenize{bar:bar-a}}\label{\detokenize{bar:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.1}\label{\detokenize{bar:id5}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.1}\label{\detokenize{bar:id6}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id7}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz:id1}}\label{\detokenize{baz::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.2}\label{\detokenize{baz:id2}}\label{\detokenize{baz:fig22}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.2}\label{\detokenize{baz:id3}}\label{\detokenize{baz:table22}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{baz:id4}}\label{\detokenize{baz:code22}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.3}\label{\detokenize{bar:id8}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.3}\label{\detokenize{bar:id9}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id10}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Bar B} +\label{\detokenize{bar:bar-b}}\label{\detokenize{bar:id3}} + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}}\label{\detokenize{bar:id4}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.4}\label{\detokenize{bar:id11}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.4}\label{\detokenize{bar:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1}\label{\detokenize{index:id1}}\label{\detokenize{index:fig1}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2}\label{\detokenize{index:id2}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1}\label{\detokenize{index:id3}}\label{\detokenize{index:table-1}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2}\label{\detokenize{index:id4}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id5}}\label{\detokenize{index:code-1}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id6}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\begin{itemize} +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Figure:\ref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Fig.2.2 is \hyperref[\detokenize{baz:fig22}]{Figure\ref{\detokenize{baz:fig22}}} + +\item {} +\sphinxAtStartPar +Table.1 is \hyperref[\detokenize{index:table-1}]{Tab\_\ref{\detokenize{index:table-1}}} + +\item {} +\sphinxAtStartPar +Table.2.2 is \hyperref[\detokenize{baz:table22}]{Table:\ref{\detokenize{baz:table22}}} + +\item {} +\sphinxAtStartPar +List.1 is \hyperref[\detokenize{index:code-1}]{Code\sphinxhyphen{}\ref{\detokenize{index:code-1}}} + +\item {} +\sphinxAtStartPar +List.2.2 is \hyperref[\detokenize{baz:code22}]{Code\sphinxhyphen{}\ref{\detokenize{baz:code22}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{SECTION\sphinxhyphen{}\ref{\detokenize{foo:foo}}} + +\item {} +\sphinxAtStartPar +Section.2.1 is \hyperref[\detokenize{bar:bar-a}]{SECTION\sphinxhyphen{}\ref{\detokenize{bar:bar-a}}} + +\item {} +\sphinxAtStartPar +Unnumbered section is \hyperref[\detokenize{index:index}]{SECTION\sphinxhyphen{}\ref{\detokenize{index:index}}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 01: \sphinxcode{\sphinxupquote{invalid}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 02: \sphinxcode{\sphinxupquote{Fig \%s \%s}} + +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Fig.\ref{\detokenize{index:fig1}} \nameref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{Sect.\ref{\detokenize{foo:foo}} \nameref{\detokenize{foo:foo}}} + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_format')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsenglish{\renewcommand{\figurename}{Figure:}} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsenglish{\renewcommand{\tablename}{Tab\_}} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsenglish{\renewcommand{\literalblockname}{Code-}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/numfig +# outdir: /tmp/pytest-of-root/pytest-0/numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_format')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +___________________________ test_numref_with_prefix2 ___________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage[,numfigreset=1,mathnumfig]{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo:id1}}\label{\detokenize{foo::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.1}\label{\detokenize{foo:id6}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.1}\label{\detokenize{foo:id7}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id8}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Foo A} +\label{\detokenize{foo:foo-a}}\label{\detokenize{foo:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.2}\label{\detokenize{foo:id9}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.3}\label{\detokenize{foo:id10}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.2}\label{\detokenize{foo:id11}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.3}\label{\detokenize{foo:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 1.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id14}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}}\label{\detokenize{foo:id3}} + +\section{Foo B} +\label{\detokenize{foo:foo-b}}\label{\detokenize{foo:id4}} + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}}\label{\detokenize{foo:id5}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.4}\label{\detokenize{foo:id15}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.4}\label{\detokenize{foo:id16}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id17}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar:id1}}\label{\detokenize{bar::doc}} + +\section{Bar A} +\label{\detokenize{bar:bar-a}}\label{\detokenize{bar:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.1}\label{\detokenize{bar:id5}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.1}\label{\detokenize{bar:id6}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id7}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz:id1}}\label{\detokenize{baz::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.2}\label{\detokenize{baz:id2}}\label{\detokenize{baz:fig22}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.2}\label{\detokenize{baz:id3}}\label{\detokenize{baz:table22}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{baz:id4}}\label{\detokenize{baz:code22}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.3}\label{\detokenize{bar:id8}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.3}\label{\detokenize{bar:id9}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id10}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Bar B} +\label{\detokenize{bar:bar-b}}\label{\detokenize{bar:id3}} + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}}\label{\detokenize{bar:id4}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.4}\label{\detokenize{bar:id11}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.4}\label{\detokenize{bar:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1}\label{\detokenize{index:id1}}\label{\detokenize{index:fig1}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2}\label{\detokenize{index:id2}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1}\label{\detokenize{index:id3}}\label{\detokenize{index:table-1}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2}\label{\detokenize{index:id4}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id5}}\label{\detokenize{index:code-1}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id6}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\begin{itemize} +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Figure:\ref{\detokenize{index:fig1}}.\@} + +\item {} +\sphinxAtStartPar +Fig.2.2 is \hyperref[\detokenize{baz:fig22}]{Figure\ref{\detokenize{baz:fig22}}} + +\item {} +\sphinxAtStartPar +Table.1 is \hyperref[\detokenize{index:table-1}]{Tab\_\ref{\detokenize{index:table-1}}:} + +\item {} +\sphinxAtStartPar +Table.2.2 is \hyperref[\detokenize{baz:table22}]{Table:\ref{\detokenize{baz:table22}}} + +\item {} +\sphinxAtStartPar +List.1 is \hyperref[\detokenize{index:code-1}]{Code\sphinxhyphen{}\ref{\detokenize{index:code-1}} | } + +\item {} +\sphinxAtStartPar +List.2.2 is \hyperref[\detokenize{baz:code22}]{Code\sphinxhyphen{}\ref{\detokenize{baz:code22}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{SECTION\_\ref{\detokenize{foo:foo}}\_} + +\item {} +\sphinxAtStartPar +Section.2.1 is \hyperref[\detokenize{bar:bar-a}]{SECTION\_\ref{\detokenize{bar:bar-a}}\_} + +\item {} +\sphinxAtStartPar +Unnumbered section is \hyperref[\detokenize{index:index}]{SECTION\_\ref{\detokenize{index:index}}\_} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 01: \sphinxcode{\sphinxupquote{invalid}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 02: \sphinxcode{\sphinxupquote{Fig \%s \%s}} + +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Fig.\ref{\detokenize{index:fig1}} \nameref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{Sect.\ref{\detokenize{foo:foo}} \nameref{\detokenize{foo:foo}}} + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_format')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsenglish{\renewcommand{\figurename}{Figure:}} +\def\fnum@figure{\figurename\thefigure{}.} + +\addto\captionsenglish{\renewcommand{\tablename}{Tab\_}} +\def\fnum@table{\tablename\thetable{}:} + +\addto\captionsenglish{\renewcommand{\literalblockname}{Code-}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/numfig +# outdir: /tmp/pytest-of-root/pytest-0/numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_format')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +_________________________ test_numref_with_language_ja _________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{ujbook} +\documentclass[letterpaper,10pt,dvipdfmx]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} + + +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} + + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + + +\usepackage[,numfigreset=1,mathnumfig]{sphinx} + +\fvset{fontsize=auto} +\usepackage[dvipdfm]{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} +\usepackage{pxjahyper} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{2026年07月07日} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo:id1}}\label{\detokenize{foo::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.1}\label{\detokenize{foo:id6}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.1}\label{\detokenize{foo:id7}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id8}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Foo A} +\label{\detokenize{foo:foo-a}}\label{\detokenize{foo:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.2}\label{\detokenize{foo:id9}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.3}\label{\detokenize{foo:id10}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.2}\label{\detokenize{foo:id11}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.3}\label{\detokenize{foo:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 1.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id14}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}}\label{\detokenize{foo:id3}} + +\section{Foo B} +\label{\detokenize{foo:foo-b}}\label{\detokenize{foo:id4}} + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}}\label{\detokenize{foo:id5}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1.4}\label{\detokenize{foo:id15}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1.4}\label{\detokenize{foo:id16}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{foo:id17}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar:id1}}\label{\detokenize{bar::doc}} + +\section{Bar A} +\label{\detokenize{bar:bar-a}}\label{\detokenize{bar:id2}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.1}\label{\detokenize{bar:id5}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.1}\label{\detokenize{bar:id6}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id7}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz:id1}}\label{\detokenize{baz::doc}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.2}\label{\detokenize{baz:id2}}\label{\detokenize{baz:fig22}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.2}\label{\detokenize{baz:id3}}\label{\detokenize{baz:table22}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{baz:id4}}\label{\detokenize{baz:code22}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.3}\label{\detokenize{bar:id8}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.3}\label{\detokenize{bar:id9}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.3} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id10}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + + +\section{Bar B} +\label{\detokenize{bar:bar-b}}\label{\detokenize{bar:id3}} + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}}\label{\detokenize{bar:id4}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2.4}\label{\detokenize{bar:id11}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2.4}\label{\detokenize{bar:id12}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 2.4} +\def\sphinxLiteralBlockLabel{\label{\detokenize{bar:id13}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.1}\label{\detokenize{index:id1}}\label{\detokenize{index:fig1}}\end{figure} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{should be Fig.2}\label{\detokenize{index:id2}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 1}\label{\detokenize{index:id3}}\label{\detokenize{index:table-1}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{should be Table 2}\label{\detokenize{index:id4}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar +hello +& +\sphinxAtStartPar +world +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\sphinxSetupCaptionForVerbatim{should be List 1} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id5}}\label{\detokenize{index:code-1}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\sphinxSetupCaptionForVerbatim{should be List 2} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:id6}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{hello world}\PYG{l+s+s1}{\PYGZsq{}}\PYG{p}{)} +\end{sphinxVerbatim} +\begin{itemize} +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{図 \ref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Fig.2.2 is \hyperref[\detokenize{baz:fig22}]{Figure\ref{\detokenize{baz:fig22}}} + +\item {} +\sphinxAtStartPar +Table.1 is \hyperref[\detokenize{index:table-1}]{表 \ref{\detokenize{index:table-1}}} + +\item {} +\sphinxAtStartPar +Table.2.2 is \hyperref[\detokenize{baz:table22}]{Table:\ref{\detokenize{baz:table22}}} + +\item {} +\sphinxAtStartPar +List.1 is \hyperref[\detokenize{index:code-1}]{リスト \ref{\detokenize{index:code-1}}} + +\item {} +\sphinxAtStartPar +List.2.2 is \hyperref[\detokenize{baz:code22}]{Code\sphinxhyphen{}\ref{\detokenize{baz:code22}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{\ref{\detokenize{foo:foo}} 章} + +\item {} +\sphinxAtStartPar +Section.2.1 is \hyperref[\detokenize{bar:bar-a}]{\ref{\detokenize{bar:bar-a}} 章} + +\item {} +\sphinxAtStartPar +Unnumbered section is \hyperref[\detokenize{index:index}]{\ref{\detokenize{index:index}} 章} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 01: \sphinxcode{\sphinxupquote{invalid}} + +\item {} +\sphinxAtStartPar +Invalid numfig\_format 02: \sphinxcode{\sphinxupquote{Fig \%s \%s}} + +\item {} +\sphinxAtStartPar +Fig.1 is \hyperref[\detokenize{index:fig1}]{Fig.\ref{\detokenize{index:fig1}} \nameref{\detokenize{index:fig1}}} + +\item {} +\sphinxAtStartPar +Section.1 is \hyperref[\detokenize{foo:foo}]{Sect.\ref{\detokenize{foo:foo}} \nameref{\detokenize{foo:foo}}} + +\end{itemize} + + + +\renewcommand{\indexname}{索引} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{前のページからの続き} +\renewcommand{\literalblockcontinuesname}{次のページに続く} +\renewcommand{\sphinxnonalphabeticalgroupname}{アルファベット以外} +\renewcommand{\sphinxsymbolsname}{記号} +\renewcommand{\sphinxnumbersname}{番号} +\def\pageautorefname{ページ} + +\@iden{\renewcommand{\figurename}{図 }} +\def\fnum@figure{\figurename\thefigure{}} + +\@iden{\renewcommand{\tablename}{表 }} +\def\fnum@table{\tablename\thetable{}} + +\@iden{\renewcommand{\literalblockname}{リスト}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/numfig +# outdir: /tmp/pytest-of-root/pytest-0/numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 4 added, 0 changed, 0 removed +reading sources... [ 25%] bar reading sources... [ 50%] baz reading sources... [ 75%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/numfig/index.rst:56: WARNING: invalid numfig_format: invalid +/tmp/pytest-of-root/pytest-0/numfig/index.rst:57: WARNING: invalid numfig_format: Fig %s %s + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-numfig +# outdir: /tmp/pytest-of-root/pytest-0/latex-numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 3 added, 0 changed, 0 removed +reading sources... [ 33%] index reading sources... [ 66%] indexhowto reading sources... [100%] indexmanual +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing SphinxManual.tex... indexmanual +resolving references... +done +writing... done +processing SphinxHowTo.tex... indexhowto +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-numfig +# outdir: /tmp/pytest-of-root/pytest-0/latex-numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] index reading sources... [ 66%] indexhowto reading sources... [100%] indexmanual +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing SphinxManual.tex... indexmanual +resolving references... +done +writing... done +processing SphinxHowTo.tex... indexhowto +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-numfig +# outdir: /tmp/pytest-of-root/pytest-0/latex-numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_secnum_depth')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] index reading sources... [ 66%] indexhowto reading sources... [100%] indexmanual +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing SphinxManual.tex... indexmanual +resolving references... +done +writing... done +processing SphinxHowTo.tex... indexhowto +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-numfig +# outdir: /tmp/pytest-of-root/pytest-0/latex-numfig/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('numfig_secnum_depth')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] index reading sources... [ 66%] indexhowto reading sources... [100%] indexmanual +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing SphinxManual.tex... indexmanual +resolving references... +done +writing... done +processing SphinxHowTo.tex... indexhowto +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('release')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_____________________ test_babel_with_no_language_settings _____________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsenglish{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsenglish{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsenglish{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsenglish{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_________________________ test_babel_with_language_de __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,ngerman]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsngerman{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{07.07.2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Stichwortverzeichnis} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{Fortsetzung der vorherigen Seite} +\renewcommand{\literalblockcontinuesname}{Fortsetzung auf der nächsten Seite} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Sonderzeichen} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{Seite} + +\addto\captionsngerman{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsngerman{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsngerman{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_________________________ test_babel_with_language_ru __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,russian]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsrussian{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{июл. 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Алфавитный указатель} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ru]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{продолжение с предыдущей страницы} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Символы} +\renewcommand{\sphinxnumbersname}{Числа} +\def\pageautorefname{страница} + +\addto\captionsrussian{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsrussian{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsrussian{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ru]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_________________________ test_babel_with_language_tr __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,turkish]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsturkish{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{07 Tem 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Dizin} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [tr]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: rST localisation for language "tr" not found. +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: Language "tr" not supported: Docutils-generated text will be in English. + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{önceki sayfadan devam} +\renewcommand{\literalblockcontinuesname}{sonraki sayfaya devam} +\renewcommand{\sphinxnonalphabeticalgroupname}{Alfabetik olmayan} +\renewcommand{\sphinxsymbolsname}{Semboller} +\renewcommand{\sphinxnumbersname}{Numaralar} +\def\pageautorefname{sayfa} + +\addto\captionsturkish{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsturkish{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsturkish{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [tr]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: rST localisation for language "tr" not found. +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: Language "tr" not supported: Docutils-generated text will be in English. + +_________________________ test_babel_with_language_ja __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{ujbook} +\documentclass[letterpaper,10pt,dvipdfmx]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} + + +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} + + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + + +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage[dvipdfm]{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} +\usepackage{pxjahyper} + +\renewcommand{\contentsname}{Table of content} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{2026年07月07日} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{索引} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{前のページからの続き} +\renewcommand{\literalblockcontinuesname}{次のページに続く} +\renewcommand{\sphinxnonalphabeticalgroupname}{アルファベット以外} +\renewcommand{\sphinxsymbolsname}{記号} +\renewcommand{\sphinxnumbersname}{番号} +\def\pageautorefname{ページ} + +\@iden{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\@iden{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\@iden{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [ja]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_______________________ test_babel_with_unknown_language _______________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsenglish{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [unknown]... not available for built-in messages +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +WARNING: no Babel option known for language 'unknown' +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: rST localisation for language "unknown" not found. +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: Language "unknown" not supported: Docutils-generated text will be in English. +WARNING: no Babel option known for language 'unknown' + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsenglish{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsenglish{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsenglish{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [unknown]... not available for built-in messages +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +WARNING: no Babel option known for language 'unknown' +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: rST localisation for language "unknown" not found. +/tmp/pytest-of-root/pytest-0/latex-babel/bar.rst:: WARNING: Language "unknown" not supported: Docutils-generated text will be in English. +WARNING: no Babel option known for language 'unknown' + +______________________ test_polyglossia_with_language_de _______________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\IfFileExists{luatex85.sty} + {\RequirePackage{luatex85}} + {\ifdefined\luatexversion\ifnum\luatexversion>84\relax + \PackageError{sphinx} + {** With this LuaTeX (\the\luatexversion),Sphinx requires luatex85.sty **} + {** Add the LaTeX package luatex85 to your TeX installation, and try again **} + \endinput\fi\fi} +\documentclass[letterpaper,10pt,german]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} +%% turn off hyperref patch of \index as sphinx.xdy xindy module takes care of +%% suitable \hyperpage mark-up, working around hyperref-xindy incompatibility +\PassOptionsToPackage{hyperindex=false}{hyperref} +%% memoir class requires extra handling +\makeatletter\@ifclassloaded{memoir} +{\ifdefined\memhyperindexfalse\memhyperindexfalse\fi}{}\makeatother + +\PassOptionsToPackage{warn}{textcomp} + +\catcode`^^^^00a0\active\protected\def^^^^00a0{\leavevmode\nobreak\ } +\usepackage{cmap} +\usepackage{fontspec} +\defaultfontfeatures[\rmfamily,\sffamily,\ttfamily]{} +\usepackage{amsmath,amssymb,amstext} +\usepackage{polyglossia} +\setmainlanguage[spelling=new]{german} + + + +\setmainfont{FreeSerif}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Italic, + BoldFont = *Bold, + BoldItalicFont = *BoldItalic +] +\setsansfont{FreeSans}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] +\setmonofont{FreeMono}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=\small} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsgerman{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{07.07.2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Stichwortverzeichnis} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{Fortsetzung der vorherigen Seite} +\renewcommand{\literalblockcontinuesname}{Fortsetzung auf der nächsten Seite} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Sonderzeichen} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{Seite} + +\addto\captionsgerman{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsgerman{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsgerman{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de]... done +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +____________________ test_polyglossia_with_language_de_1901 ____________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\IfFileExists{luatex85.sty} + {\RequirePackage{luatex85}} + {\ifdefined\luatexversion\ifnum\luatexversion>84\relax + \PackageError{sphinx} + {** With this LuaTeX (\the\luatexversion),Sphinx requires luatex85.sty **} + {** Add the LaTeX package luatex85 to your TeX installation, and try again **} + \endinput\fi\fi} +\documentclass[letterpaper,10pt,german]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} +%% turn off hyperref patch of \index as sphinx.xdy xindy module takes care of +%% suitable \hyperpage mark-up, working around hyperref-xindy incompatibility +\PassOptionsToPackage{hyperindex=false}{hyperref} +%% memoir class requires extra handling +\makeatletter\@ifclassloaded{memoir} +{\ifdefined\memhyperindexfalse\memhyperindexfalse\fi}{}\makeatother + +\PassOptionsToPackage{warn}{textcomp} + +\catcode`^^^^00a0\active\protected\def^^^^00a0{\leavevmode\nobreak\ } +\usepackage{cmap} +\usepackage{fontspec} +\defaultfontfeatures[\rmfamily,\sffamily,\ttfamily]{} +\usepackage{amsmath,amssymb,amstext} +\usepackage{polyglossia} +\setmainlanguage[spelling=old]{german} + + + +\setmainfont{FreeSerif}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Italic, + BoldFont = *Bold, + BoldItalicFont = *BoldItalic +] +\setsansfont{FreeSans}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] +\setmonofont{FreeMono}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] + + + +\usepackage[Sonny]{fncychap} +\ChNameVar{\Large\normalfont\sffamily} +\ChTitleVar{\Large\normalfont\sffamily} +\usepackage{sphinx} + +\fvset{fontsize=\small} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsgerman{\renewcommand{\contentsname}{Table of content}} + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de-1901]... not available for built-in messages +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + + +% +% sphinxmessages.sty +% +% message resources for Sphinx +% +\ProvidesPackage{sphinxmessages}[2019/01/04 v2.0 Localized LaTeX macros (Sphinx team)] + +\renewcommand{\literalblockcontinuedname}{continued from previous page} +\renewcommand{\literalblockcontinuesname}{continues on next page} +\renewcommand{\sphinxnonalphabeticalgroupname}{Non\sphinxhyphen{}alphabetical} +\renewcommand{\sphinxsymbolsname}{Symbols} +\renewcommand{\sphinxnumbersname}{Numbers} +\def\pageautorefname{page} + +\addto\captionsgerman{\renewcommand{\figurename}{Fig.\@{} }} +\def\fnum@figure{\figurename\thefigure{}} + +\addto\captionsgerman{\renewcommand{\tablename}{Table.\@{} }} +\def\fnum@table{\tablename\thetable{}} + +\addto\captionsgerman{\renewcommand{\literalblockname}{List.}} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-babel +# outdir: /tmp/pytest-of-root/pytest-0/latex-babel/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading translations [de-1901]... not available for built-in messages +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('language')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +________________________________ test_footnote _________________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage[,numfigreset=1,mathnumfig]{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + +\addto\captionsenglish{\renewcommand{\contentsname}{Table of Contents}} + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{1} + + + +\title{Sphinx \textless{}Tests\textgreater{}} +\date{July 07, 2026} +\release{0.6alpha1} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{Release} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +Contents: + +\sphinxstepscope + + +\chapter{Extension API tests} +\label{\detokenize{extapi:extension-api-tests}}\label{\detokenize{extapi::doc}} +\sphinxAtStartPar +Testing directives: +\sphinxstylestrong{from class: Bar} +\sphinxstepscope + + +\chapter{Sphinx image handling} +\label{\detokenize{images:sphinx-image-handling}}\label{\detokenize{images::doc}} +\noindent\sphinxincludegraphics{{img}.png} + +\noindent\sphinxincludegraphics[width=200\sphinxpxdimen,height=100\sphinxpxdimen]{{img1}.png} + +\noindent\sphinxincludegraphics{{img}.pdf} + +\noindent\sphinxincludegraphics{{python-logo}.png} + +\noindent\sphinxincludegraphics{{simg}.png} + +\noindent\sphinxincludegraphics{{svgimg}.pdf} + +\noindent\sphinxincludegraphics{{img.foo}.png} + +\sphinxstepscope + + +\chapter{Image including source in subdir} +\label{\detokenize{subdir/images:image-including-source-in-subdir}}\label{\detokenize{subdir/images::doc}} +\noindent\sphinxincludegraphics{{img1}.png} + +\noindent\sphinxincludegraphics{{rimg}.png} + +\sphinxstepscope + + +\chapter{Including in subdir} +\label{\detokenize{subdir/includes:including-in-subdir}}\label{\detokenize{subdir/includes::doc}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s2}{\PYGZdq{}}\PYG{l+s+s2}{line 1}\PYG{l+s+s2}{\PYGZdq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s2}{\PYGZdq{}}\PYG{l+s+s2}{line 2}\PYG{l+s+s2}{\PYGZdq{}}\PYG{p}{)} +\end{sphinxVerbatim} + +\sphinxAtStartPar +Absolute \sphinxcode{\sphinxupquote{/img.png}} download. + +\noindent\sphinxincludegraphics{{img}.png} + +\sphinxAtStartPar +This is an include file. + +\sphinxstepscope + + +\chapter{Testing downloadable files} +\label{\detokenize{includes:testing-downloadable-files}}\label{\detokenize{includes::doc}} +\sphinxAtStartPar +Download \sphinxcode{\sphinxupquote{img.png}} here. +Download \sphinxcode{\sphinxupquote{this}} there. +Download \sphinxcode{\sphinxupquote{file with special characters}}. + + +\chapter{Test file and literal inclusion} +\label{\detokenize{includes:test-file-and-literal-inclusion}} +\noindent\sphinxincludegraphics{{img1}.png} + +\noindent\sphinxincludegraphics{{img1}.png} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{c+c1}{\PYGZsh{} Literally included file using Python highlighting} +\PYG{c+c1}{\PYGZsh{} \PYGZhy{}*\PYGZhy{} coding: utf\PYGZhy{}8 \PYGZhy{}*\PYGZhy{}} + +\PYG{n}{foo} \PYG{o}{=} \PYG{l+s+s2}{\PYGZdq{}}\PYG{l+s+s2}{Including Unicode characters: üöä}\PYG{l+s+s2}{\PYGZdq{}} + +\PYG{k}{class} \PYG{n+nc}{Foo}\PYG{p}{:} + \PYG{k}{pass} + +\PYG{k}{class} \PYG{n+nc}{Bar}\PYG{p}{:} + \PYG{k}{def} \PYG{n+nf}{baz}\PYG{p}{(}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{pass} + +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{p}{)}\PYG{p}{:} \PYG{k}{pass} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +This file is encoded in latin\PYGZhy{}1 but at first read as utf\PYGZhy{}8. + +Max Strauß aß in München eine Leberkässemmel. +\end{sphinxVerbatim} + +\sphinxAtStartPar +This file is encoded in latin\sphinxhyphen{}1 but at first read as utf\sphinxhyphen{}8. + +\sphinxAtStartPar +Max Strauß aß in München eine Leberkässemmel. + + +\chapter{Literalinclude options} +\label{\detokenize{includes:literalinclude-options}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +class Foo: + pass +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] + def baz(): + pass +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\},numbers=left,firstnumber=6,stepnumber=1] +class Foo: + pass +class Bar: +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +START CODE +\PYGZsh{} Literally included file using Python highlighting +\PYGZsh{} \PYGZhy{}*\PYGZhy{} coding: utf\PYGZhy{}8 \PYGZhy{}*\PYGZhy{} + +foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} + +class Foo: + pass + +class Bar: + def baz(): + pass + +def bar(): pass +END CODE +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} + +class Foo: + pass + +class Bar: + def baz(): + pass + +def bar(): pass +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYGZsh{} Literally included file using Python highlighting +\PYGZsh{} \PYGZhy{}*\PYGZhy{} coding: utf\PYGZhy{}8 \PYGZhy{}*\PYGZhy{} + +foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{g+gd}{\PYGZhy{}\PYGZhy{}\PYGZhy{} /tmp/pytest\PYGZhy{}of\PYGZhy{}root/pytest\PYGZhy{}0/root/literal\PYGZus{}orig.inc} +\PYG{g+gi}{+++ /tmp/pytest\PYGZhy{}of\PYGZhy{}root/pytest\PYGZhy{}0/root/literal.inc} +\PYG{g+gu}{@@ \PYGZhy{}1,11 +1,12 @@} +\PYG{+w}{ }\PYGZsh{} Literally included file using Python highlighting +\PYG{g+gi}{+\PYGZsh{} \PYGZhy{}*\PYGZhy{} coding: utf\PYGZhy{}8 \PYGZhy{}*\PYGZhy{}} +\PYG{+w}{ } +\PYG{g+gd}{\PYGZhy{}foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} \PYGZsh{} This will be changed} +\PYG{g+gi}{+foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{}} +\PYG{+w}{ } +\PYG{g+gd}{\PYGZhy{}class FooOrig:} +\PYG{g+gi}{+class Foo:} +\PYG{+w}{ } pass +\PYG{+w}{ } +\PYG{g+gd}{\PYGZhy{}class BarOrig:} +\PYG{g+gi}{+class Bar:} +\PYG{+w}{ } def baz(): +\PYG{+w}{ } pass +\PYG{+w}{ } +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +Tabs include file test +\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{}\PYGZhy{} + +The next line has a tab: +\PYGZhy{}| |\PYGZhy{} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n}{Tabs} \PYG{n}{include} \PYG{n}{file} \PYG{n}{test} +\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}}\PYG{o}{\PYGZhy{}} + +\PYG{n}{The} \PYG{n+nb}{next} \PYG{n}{line} \PYG{n}{has} \PYG{n}{a} \PYG{n}{tab}\PYG{p}{:} +\PYG{o}{\PYGZhy{}}\PYG{o}{|} \PYG{o}{|}\PYG{o}{\PYGZhy{}} +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\},numbers=left,firstnumber=6,stepnumber=1] +class Foo: + pass +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\},numbers=left,firstnumber=6,stepnumber=1] +class Foo: + pass +\end{sphinxVerbatim} + +\begin{sphinxVerbatim}[commandchars=\\\{\},numbers=left,firstnumber=3,stepnumber=1] +foo = \PYGZdq{}Including Unicode characters: üöä\PYGZdq{} +\end{sphinxVerbatim} + +\sphinxAtStartPar +Test if dedenting before parsing works. + +\begin{sphinxVerbatim}[commandchars=\\\{\}] + \PYG{k}{def} \PYG{n+nf}{baz}\PYG{p}{(}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{pass} +\end{sphinxVerbatim} + + +\chapter{Docutils include with “literal”} +\label{\detokenize{includes:docutils-include-with-literal}} +\sphinxAtStartPar +While not recommended, it should work (and leave quotes alone). + +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{n}{Testing} \PYG{l+s+s2}{\PYGZdq{}}\PYG{l+s+s2}{quotes}\PYG{l+s+s2}{\PYGZdq{}} \PYG{o+ow}{in} \PYG{n}{literal} \PYG{l+s+s1}{\PYGZsq{}}\PYG{l+s+s1}{included}\PYG{l+s+s1}{\PYGZsq{}} \PYG{n}{text}\PYG{o}{.} +\end{sphinxVerbatim} + +\sphinxstepscope + + +\chapter{Testing various markup} +\label{\detokenize{markup:testing-various-markup}}\label{\detokenize{markup:id1}}\label{\detokenize{markup::doc}} + +\section{Meta markup} +\label{\detokenize{markup:meta-markup}} +\sphinxAtStartPar +\sphinxstyleemphasis{Section author: Georg Brandl} + +\sphinxAtStartPar +\sphinxstyleemphasis{Module author: Georg Brandl} + +\begin{sphinxShadowBox} +\sphinxstyletopictitle{TOC} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id12}}{\hyperref[\detokenize{markup:testing-various-markup}]{\sphinxcrossref{Testing various markup}}} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id13}}{\hyperref[\detokenize{markup:meta-markup}]{\sphinxcrossref{Meta markup}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id14}}{\hyperref[\detokenize{markup:generic-rest}]{\sphinxcrossref{Generic reST}}} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id15}}{\hyperref[\detokenize{markup:body-directives}]{\sphinxcrossref{Body directives}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id16}}{\hyperref[\detokenize{markup:admonitions}]{\sphinxcrossref{Admonitions}}} + +\end{itemize} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id17}}{\hyperref[\detokenize{markup:inline-markup}]{\sphinxcrossref{Inline markup}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id18}}{\hyperref[\detokenize{markup:with}]{\sphinxcrossref{With}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id19}}{\hyperref[\detokenize{markup:tables}]{\sphinxcrossref{Tables}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id20}}{\hyperref[\detokenize{markup:figures}]{\sphinxcrossref{Figures}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id21}}{\hyperref[\detokenize{markup:version-markup}]{\sphinxcrossref{Version markup}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id22}}{\hyperref[\detokenize{markup:code-blocks}]{\sphinxcrossref{Code blocks}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id23}}{\hyperref[\detokenize{markup:misc-stuff}]{\sphinxcrossref{Misc stuff}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id24}}{\hyperref[\detokenize{markup:index-markup}]{\sphinxcrossref{Index markup}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id25}}{\hyperref[\detokenize{markup:o-some-strange-characters}]{\sphinxcrossref{Ö… Some strange characters}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id26}}{\hyperref[\detokenize{markup:only-directive}]{\sphinxcrossref{Only directive}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id27}}{\hyperref[\detokenize{markup:any-role}]{\sphinxcrossref{Any role}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{markup:id28}}{\hyperref[\detokenize{markup:smart-quotes}]{\sphinxcrossref{Smart quotes}}} + +\end{itemize} + +\end{itemize} +\end{sphinxShadowBox} + + +\section{Generic reST} +\label{\detokenize{markup:generic-rest}} +\sphinxAtStartPar +A global substitution! + +\def\sphinxLiteralBlockLabel{\label{\detokenize{markup:label}}} +\begin{sphinxVerbatim}[commandchars=\\\{\}] +some code +\end{sphinxVerbatim} + +\sphinxAtStartPar +Option list: +\begin{optionlist}{3cm} +\item [\sphinxhyphen{}h] +\sphinxAtStartPar +help +\item [\sphinxhyphen{}\sphinxhyphen{}help] +\sphinxAtStartPar +also help +\end{optionlist} + +\sphinxAtStartPar +Line block: + +\begin{DUlineblock}{0em} +\item[] line1 +\item[] +\begin{DUlineblock}{\DUlineblockindent} +\item[] line2 +\item[] +\begin{DUlineblock}{\DUlineblockindent} +\item[] line3 +\item[] +\begin{DUlineblock}{\DUlineblockindent} +\item[] line4 +\end{DUlineblock} +\end{DUlineblock} +\item[] line5 +\end{DUlineblock} +\item[] line6 +\item[] +\begin{DUlineblock}{\DUlineblockindent} +\item[] line7 +\end{DUlineblock} +\end{DUlineblock} + + +\subsection{Body directives} +\label{\detokenize{markup:body-directives}} +\begin{sphinxShadowBox} +\sphinxstyletopictitle{Title} + +\sphinxAtStartPar +Topic body. +\end{sphinxShadowBox} + +\begin{sphinxShadowBox} +\sphinxstylesidebartitle{Sidebar} +\sphinxstylesidebarsubtitle{Sidebar subtitle} + +\sphinxAtStartPar +Sidebar body. +\end{sphinxShadowBox} +\subsubsection*{Test rubric} +\begin{quote} + +\sphinxAtStartPar +Epigraph title + +\sphinxAtStartPar +Epigraph body. + +\begin{flushright} +---Author +\end{flushright} +\end{quote} +\begin{quote} + +\sphinxAtStartPar +Highlights + +\sphinxAtStartPar +Highlights body. +\end{quote} +\begin{quote} + +\sphinxAtStartPar +Pull\sphinxhyphen{}quote + +\sphinxAtStartPar +Pull quote body. +\end{quote} + +\sphinxAtStartPar +a + +\sphinxAtStartPar +b +\begin{sphinxalltt} +with some \sphinxstyleemphasis{markup} inside +\end{sphinxalltt} + + +\subsection{Admonitions} +\label{\detokenize{markup:admonitions}}\label{\detokenize{markup:admonition-section}} +\begin{sphinxadmonition}{note}{My Admonition} + +\sphinxAtStartPar +Admonition text. +\end{sphinxadmonition} + +\begin{sphinxadmonition}{note}{Note:} +\sphinxAtStartPar +Note text. +\end{sphinxadmonition} + +\begin{sphinxadmonition}{warning}{Warning:} +\sphinxAtStartPar +Warning text. +\end{sphinxadmonition} +\phantomsection\label{\detokenize{markup:some-label}} +\begin{sphinxadmonition}{tip}{Tip:} +\sphinxAtStartPar +Tip text. +\end{sphinxadmonition} + +\sphinxAtStartPar +Indirect hyperlink targets + + +\section{Inline markup} +\label{\detokenize{markup:inline-markup}} +\sphinxAtStartPar +\sphinxstyleemphasis{Generic inline markup} + +\sphinxAtStartPar +Adding n to test unescaping. +\begin{itemize} +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{command\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleemphasis{dfn\textbackslash{}n} + +\item {} +\sphinxAtStartPar +\sphinxguilabel{guilabel with \sphinxaccelerator{a}ccelerator and \textbackslash{}n} + +\item {} +\sphinxAtStartPar +\sphinxkeyboard{\sphinxupquote{kbd\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralemphasis{\sphinxupquote{mailheader\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{makevar\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralemphasis{\sphinxupquote{manpage\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralemphasis{\sphinxupquote{mimetype\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralemphasis{\sphinxupquote{newsgroup\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{program\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{regexp\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxmenuselection{File \(\rightarrow\) Close\textbackslash{}n} + +\item {} +\sphinxAtStartPar +\sphinxmenuselection{\sphinxaccelerator{F}ile \(\rightarrow\) \sphinxaccelerator{P}rint} + +\item {} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{a/\sphinxstyleemphasis{varpart}/b\textbackslash{}n}} + +\item {} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{print \sphinxstyleemphasis{i}\textbackslash{}n}} + +\end{itemize} + +\sphinxAtStartPar +\sphinxstyleemphasis{Linking inline markup} +\begin{itemize} +\item {} +\sphinxAtStartPar +\index{Python Enhancement Proposals@\spxentry{Python Enhancement Proposals}!PEP 8@\spxentry{PEP 8}}\sphinxhref{https://peps.python.org/pep-0008/}{\sphinxstylestrong{PEP 8}} + +\item {} +\sphinxAtStartPar +\index{Python Enhancement Proposals@\spxentry{Python Enhancement Proposals}!PEP 8@\spxentry{PEP 8}}\sphinxhref{https://peps.python.org/pep-0008/}{\sphinxstylestrong{Python Enhancement Proposal \#8}} + +\item {} +\sphinxAtStartPar +\index{RFC@\spxentry{RFC}!RFC 1@\spxentry{RFC 1}}\sphinxhref{https://datatracker.ietf.org/doc/html/rfc1.html}{\sphinxstylestrong{RFC 1}} + +\item {} +\sphinxAtStartPar +\index{RFC@\spxentry{RFC}!RFC 1@\spxentry{RFC 1}}\sphinxhref{https://datatracker.ietf.org/doc/html/rfc1.html}{\sphinxstylestrong{Request for Comments \#1}} + +\item {} +\sphinxAtStartPar +\index{HOME@\spxentry{HOME}}\index{environment variable@\spxentry{environment variable}!HOME@\spxentry{HOME}}{\hyperref[\detokenize{objects:envvar-HOME}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{HOME}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:with}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{with}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:grammar-token-try_stmt}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{try statement}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:admonition-section}]{\sphinxcrossref{\DUrole{std,std-ref}{Admonitions}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:some-label}]{\sphinxcrossref{\DUrole{std,std-ref}{here}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:some-label}]{\sphinxcrossref{\DUrole{std,std-ref}{there}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-figure}]{\sphinxcrossref{\DUrole{std,std-ref}{My caption of the figure}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-figure-name}]{\sphinxcrossref{\DUrole{std,std-ref}{My caption of the figure}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-table}]{\sphinxcrossref{\DUrole{std,std-ref}{my table}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-table-name}]{\sphinxcrossref{\DUrole{std,std-ref}{my table}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-code-block}]{\sphinxcrossref{\DUrole{std,std-ref}{my ruby code}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:my-code-block-name}]{\sphinxcrossref{\DUrole{std,std-ref}{my ruby code}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:id1}]{\sphinxcrossref{\DUrole{std,std-ref}{Testing various markup}}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-figure}]{Fig.\@ \ref{\detokenize{markup:my-figure}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-figure-name}]{Fig.\@ \ref{\detokenize{markup:my-figure-name}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-table}]{Table \ref{\detokenize{markup:my-table}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-table-name}]{Table \ref{\detokenize{markup:my-table-name}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-code-block}]{Listing \ref{\detokenize{markup:my-code-block}}} + +\item {} +\sphinxAtStartPar +\hyperref[\detokenize{markup:my-code-block-name}]{Listing \ref{\detokenize{markup:my-code-block-name}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{subdir/includes::doc}]{\sphinxcrossref{\DUrole{doc}{Including in subdir}}}} + +\item {} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{:download:}} is tested in includes.txt + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:cmdoption-python-c}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Python \sphinxhyphen{}c option}}}}} + +\end{itemize} + +\sphinxAtStartPar +Test \sphinxstyleabbreviation{abbr} (abbreviation) and another \sphinxstyleabbreviation{abbr}. + +\sphinxAtStartPar +Testing the \index{index@\spxentry{index}}index role, also available with +\index{title@\spxentry{title}!explicit@\spxentry{explicit}}\index{explicit@\spxentry{explicit}!title@\spxentry{title}}explicit title. + + +\section{With} +\label{\detokenize{markup:with}}\label{\detokenize{markup:id2}} +\sphinxAtStartPar +(Empty section.) + + +\section{Tables} +\label{\detokenize{markup:tables}} + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{my table}\label{\detokenize{markup:my-table-name}}\label{\detokenize{markup:my-table}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|L|p{5cm}|R|} +\hline + +\sphinxAtStartPar +1 +&\begin{itemize} +\item {} +\sphinxAtStartPar +Block elems + +\item {} +\sphinxAtStartPar +In table + +\end{itemize} +& +\sphinxAtStartPar +x +\\ +\hline +\sphinxAtStartPar +2 +& +\sphinxAtStartPar +Empty cells: +&\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{empty cell in table header}\label{\detokenize{markup:id7}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline + +\sphinxAtStartPar + +&\sphinxstyletheadfamily \\ +\hline +\sphinxAtStartPar +1 +& +\sphinxAtStartPar +2 +\\ +\hline +\sphinxAtStartPar +3 +& +\sphinxAtStartPar +4 +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + +\sphinxAtStartPar +Tables with multirow and multicol: + + +\begin{savenotes}\sphinxattablestart +\centering +\begin{tabulary}{\linewidth}[t]{|T|T|T|T|T|} +\hline + +\sphinxAtStartPar +1 +&\sphinxstartmulticolumn{2}% +\begin{varwidth}[t]{\sphinxcolwidth{2}{5}} +\sphinxAtStartPar +test! +\par +\vskip-\baselineskip\vbox{\hbox{\strut}}\end{varwidth}% +\sphinxstopmulticolumn +&\sphinxstartmulticolumn{2}% +\sphinxmultirow{2}{3}{% +\begin{varwidth}[t]{\sphinxcolwidth{2}{5}} +\sphinxAtStartPar +c +\par +\vskip-\baselineskip\vbox{\hbox{\strut}}\end{varwidth}% +}% +\sphinxstopmulticolumn +\\ +\cline{1-3}\sphinxmultirow{2}{4}{% +\begin{varwidth}[t]{\sphinxcolwidth{1}{5}} +\sphinxAtStartPar +2 +y +x +\par +\vskip-\baselineskip\vbox{\hbox{\strut}}\end{varwidth}% +}% +& +\sphinxAtStartPar +col +& +\sphinxAtStartPar +col +&\multicolumn{2}{l|}{\sphinxtablestrut{3}}\\ +\cline{2-5}\sphinxtablestrut{4}&\sphinxstartmulticolumn{3}% +\begin{varwidth}[t]{\sphinxcolwidth{3}{5}} +\sphinxAtStartPar +multi\sphinxhyphen{}column cell +\par +\vskip-\baselineskip\vbox{\hbox{\strut}}\end{varwidth}% +\sphinxstopmulticolumn +& +\sphinxAtStartPar +x +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\begin{tabulary}{\linewidth}[t]{|T|} +\hline +\sphinxmultirow{2}{1}{% +\begin{varwidth}[t]{\sphinxcolwidth{1}{1}} +\sphinxAtStartPar +1 +\par +\vskip-\baselineskip\vbox{\hbox{\strut}}\end{varwidth}% +}% +\\ +\sphinxtablestrut{1}\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxattablestart +\centering +\begin{tabulary}{\linewidth}[t]{|T|} +\hline +\begin{sphinxfigure-in-table} +\centering +\capstart +\noindent\sphinxincludegraphics{{img}.png} +\sphinxfigcaption{figure in table}\label{\detokenize{markup:id8}}\end{sphinxfigure-in-table}\relax +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\section{Figures} +\label{\detokenize{markup:figures}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{img}.png} +\caption{My caption of the figure}\label{\detokenize{markup:my-figure-name}}\label{\detokenize{markup:my-figure}} +\begin{sphinxlegend} +\sphinxAtStartPar +My description paragraph of the figure. + +\sphinxAtStartPar +Description paragraph is wrapped with legend node. +\end{sphinxlegend} +\end{figure} + + +\begin{wrapfigure}{r}{0pt} +\centering +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{figure with align option}\label{\detokenize{markup:id9}}\end{wrapfigure} + + +\begin{wrapfigure}{r}{0.500\linewidth} +\centering +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{figure with align \& figwidth option}\label{\detokenize{markup:id10}}\end{wrapfigure} + + +\begin{wrapfigure}{r}{3cm} +\centering +\noindent\sphinxincludegraphics[width=3cm]{{rimg}.png} +\caption{figure with align \& width option}\label{\detokenize{markup:id11}}\end{wrapfigure} + + +\section{Version markup} +\label{\detokenize{markup:version-markup}} +\sphinxAtStartPar +\DUrole{versionmodified,added}{New in version 0.6: }Some funny \sphinxstylestrong{stuff}. + +\sphinxAtStartPar +\DUrole{versionmodified,changed}{Changed in version 0.6: }Even more funny stuff. + +\sphinxAtStartPar +\DUrole{versionmodified,deprecated}{Deprecated since version 0.6: }Boring stuff. + +\sphinxAtStartPar +\DUrole{versionmodified,added}{New in version 1.2: }First paragraph of versionadded. + +\sphinxAtStartPar +\DUrole{versionmodified,changed}{Changed in version 1.2: }First paragraph of versionchanged. + +\sphinxAtStartPar +Second paragraph of versionchanged. + + +\section{Code blocks} +\label{\detokenize{markup:code-blocks}}\sphinxSetupCaptionForVerbatim{my ruby code} +\def\sphinxLiteralBlockLabel{\label{\detokenize{markup:my-code-block-name}}\label{\detokenize{markup:my-code-block}}} +\begin{sphinxVerbatim}[commandchars=\\\{\},numbers=left,firstnumber=1,stepnumber=1] +\PYG{k}{def}\PYG{+w}{ }\PYG{n+nf}{ruby?} +\PYG{+w}{ }\PYG{k+kp}{false} +\PYG{k}{end} +\end{sphinxVerbatim} + + +\section{Misc stuff} +\label{\detokenize{markup:misc-stuff}} +\sphinxAtStartPar +Stuff % +\begin{footnote}[1]\sphinxAtStartFootnote +Like footnotes. +% +\end{footnote} + +\sphinxAtStartPar +Reference lookup: \sphinxcite{index:ref1} (defined in another file). +Reference lookup underscore: \sphinxcite{index:ref-1} + + +\sphinxstrong{See also:} +\nopagebreak + + +\sphinxAtStartPar +something, something else, something more +\begin{description} +\sphinxlineitem{\sphinxhref{http://www.google.com}{Google}} +\sphinxAtStartPar +For everything. + +\end{description} + + +\begin{multicols}{4}\raggedright +\begin{itemize}\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt} +\item {} +\sphinxAtStartPar +This + +\item {} +\sphinxAtStartPar +is + +\item {} +\sphinxAtStartPar +a horizontal + +\item {} +\sphinxAtStartPar +list + +\item {} +\sphinxAtStartPar +with several + +\item {} +\sphinxAtStartPar +items + +\end{itemize}\raggedcolumns\end{multicols} +\subsubsection*{Side note} + +\sphinxAtStartPar +This is a side note. + +\sphinxAtStartPar +This tests \sphinxcode{\sphinxupquote{role names in uppercase}}. + +\begin{center}LICENSE AGREEMENT +\end{center} + +Terry Pratchett, Tolkien, Monty Python. + +\begin{description} +\sphinxlineitem{ähnlich\index{ähnlich@\spxentry{ähnlich}|spxpagem}\phantomsection\label{\detokenize{markup:term-ahnlich}}} +\sphinxAtStartPar +Dinge + +\sphinxlineitem{boson\index{boson@\spxentry{boson}|spxpagem}\phantomsection\label{\detokenize{markup:term-boson}}} +\sphinxAtStartPar +Particle with integer spin. + +\sphinxlineitem{\sphinxstyleemphasis{fermion}\index{fermion@\spxentry{fermion}|spxpagem}\phantomsection\label{\detokenize{markup:term-fermion}}} +\sphinxAtStartPar +Particle with half\sphinxhyphen{}integer spin. + +\sphinxlineitem{tauon\index{tauon@\spxentry{tauon}|spxpagem}\phantomsection\label{\detokenize{markup:term-tauon}}}\sphinxlineitem{myon\index{myon@\spxentry{myon}|spxpagem}\phantomsection\label{\detokenize{markup:term-myon}}}\sphinxlineitem{electron\index{electron@\spxentry{electron}|spxpagem}\phantomsection\label{\detokenize{markup:term-electron}}} +\sphinxAtStartPar +Examples for fermions. + +\sphinxlineitem{über\index{über@\spxentry{über}|spxpagem}\phantomsection\label{\detokenize{markup:term-uber}}} +\sphinxAtStartPar +Gewisse + +\end{description} + + +\begin{productionlist} +\phantomsection\label{\detokenize{markup:grammar-token-try_stmt}}\production{try\_stmt}{ {\hyperref[\detokenize{markup:grammar-token-try1_stmt}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{try1\_stmt}}}}} | {\hyperref[\detokenize{markup:grammar-token-try2_stmt}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{try2\_stmt}}}}}} +\phantomsection\label{\detokenize{markup:grammar-token-try1_stmt}}\production{try1\_stmt}{ "try" ":" \sphinxcode{\sphinxupquote{suite}}} +\productioncont{ ("except" {[}\sphinxcode{\sphinxupquote{expression}} {[}"," \sphinxcode{\sphinxupquote{target}}{]}{]} ":" \sphinxcode{\sphinxupquote{suite}})+} +\productioncont{ {[}"else" ":" \sphinxcode{\sphinxupquote{suite}}{]}} +\productioncont{ {[}"finally" ":" \sphinxcode{\sphinxupquote{suite}}{]}} +\phantomsection\label{\detokenize{markup:grammar-token-try2_stmt}}\production{try2\_stmt}{ "try" ":" \sphinxcode{\sphinxupquote{suite}}} +\productioncont{ "finally" ":" \sphinxcode{\sphinxupquote{suite}}} +\end{productionlist} + + + +\section{Index markup} +\label{\detokenize{markup:index-markup}} +\index{entry@\spxentry{entry}}\index{entry@\spxentry{entry}!pair@\spxentry{pair}}\index{pair@\spxentry{pair}!entry@\spxentry{entry}}\index{entry@\spxentry{entry}!double@\spxentry{double}}\index{double@\spxentry{double}!entry@\spxentry{entry}}\index{index@\spxentry{index}!entry triple@\spxentry{entry} \spxentry{triple}}\index{entry@\spxentry{entry}!triple, index@\spxentry{triple}, \spxentry{index}}\index{triple@\spxentry{triple}!index entry@\spxentry{index} \spxentry{entry}}\index{keyword@\spxentry{keyword}!with@\spxentry{with}}\index{with@\spxentry{with}!keyword@\spxentry{keyword}}\index{from@\spxentry{from}|see{to}}\index{fromalso@\spxentry{fromalso}|see{toalso}}\ignorespaces +\index{Main@\spxentry{Main}|spxpagem}\index{Other@\spxentry{Other}|spxpagem}\index{entry@\spxentry{entry}!pair@\spxentry{pair}|spxpagem}\ignorespaces +\sphinxAtStartPar +\index{Main@\spxentry{Main}|spxpagem}Main + + +\section{Ö… Some strange characters} +\label{\detokenize{markup:o-some-strange-characters}}\label{\detokenize{markup:olabel}} +\sphinxAtStartPar +Testing öäü… + + +\section{Only directive} +\label{\detokenize{markup:only-directive}} +\sphinxAtStartPar +In LaTeX. + +\sphinxAtStartPar +In both. + + +\section{Any role} +\label{\detokenize{markup:any-role}} +\sphinxAtStartPar +Test referencing to {\hyperref[\detokenize{markup:with}]{\sphinxcrossref{\DUrole{std,std-ref,std,std-ref}{headings}}}} and {\hyperref[\detokenize{objects:func_without_body}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{objects}}}}}. +Also {\hyperref[\detokenize{objects:module-mod}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{modules}}}}} and {\hyperref[\detokenize{objects:Time}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{classes}}}}}. + +\sphinxAtStartPar +More domains: +\begin{itemize} +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:bar.baz}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{JS}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:c.SphinxType}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{C}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:userdesc-myobj}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{myobj}}}}} (user markup) + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:_CPPv4N1n5ArrayE}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{n::Array}}}}} + +\item {} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:cmdoption-perl-c}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{perl \sphinxhyphen{}c}}}}} + +\end{itemize} + + +\section{Smart quotes} +\label{\detokenize{markup:smart-quotes}}\begin{itemize} +\item {} +\sphinxAtStartPar +Smart “quotes” in English ‘text’. + +\item {} +\sphinxAtStartPar +Smart — long and \textendash{} short dashes. + +\item {} +\sphinxAtStartPar +Ellipsis… + +\item {} +\sphinxAtStartPar +No smartypants in literal blocks: \sphinxcode{\sphinxupquote{foo\sphinxhyphen{}\sphinxhyphen{}"bar"...}}. + +\end{itemize} + +\sphinxstepscope + + +\chapter{Testing object descriptions} +\label{\detokenize{objects:testing-object-descriptions}}\label{\detokenize{objects::doc}}\index{built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}!func\_without\_module()@\spxentry{func\_without\_module()}}\index{func\_without\_module()@\spxentry{func\_without\_module()}!built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:func_without_module}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{func\_without\_module}}}{\emph{\DUrole{n}{a}}, \emph{\DUrole{n}{b}}, \emph{\DUrole{n}{*c}}\sphinxoptional{, \emph{\DUrole{n}{d}}}}{} +\pysigstopsignatures +\sphinxAtStartPar +Does something. + +\end{fulllineitems} + +\index{built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}!func\_without\_body()@\spxentry{func\_without\_body()}}\index{func\_without\_body()@\spxentry{func\_without\_body()}!built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:func_without_body}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{func\_without\_body}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}!func\_with\_unknown\_field()@\spxentry{func\_with\_unknown\_field()}}\index{func\_with\_unknown\_field()@\spxentry{func\_with\_unknown\_field()}!built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:func_with_unknown_field}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{func\_with\_unknown\_field}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +: : + +\sphinxAtStartPar +: empty field name: +\begin{quote}\begin{description} +\sphinxlineitem{Field\_name} +\sphinxlineitem{Field\_name all lower} +\sphinxlineitem{FIELD\_NAME} +\sphinxlineitem{FIELD\_NAME ALL CAPS} +\sphinxlineitem{Field\_Name} +\sphinxlineitem{Field\_Name All Word Caps} +\sphinxlineitem{Field\_name} +\sphinxlineitem{Field\_name First word cap} +\sphinxlineitem{FIELd\_name} +\sphinxlineitem{FIELd\_name PARTial caps} +\end{description}\end{quote} + +\end{fulllineitems} + + + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{func\_noindex}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{func\_with\_module() (in module foolib)@\spxentry{func\_with\_module()}\spxextra{in module foolib}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:foolib.func_with_module}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxcode{\sphinxupquote{foolib.}}\sphinxbfcode{\sphinxupquote{func\_with\_module}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + + +\sphinxAtStartPar +Referring to \sphinxcode{\sphinxupquote{func with no index}}. +Referring to \sphinxcode{\sphinxupquote{nothing}}. + +\phantomsection\label{\detokenize{objects:module-mod}}\index{module@\spxentry{module}!mod@\spxentry{mod}}\index{mod@\spxentry{mod}!module@\spxentry{module}}\index{func\_in\_module() (in module mod)@\spxentry{func\_in\_module()}\spxextra{in module mod}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.func_in_module}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxcode{\sphinxupquote{mod.}}\sphinxbfcode{\sphinxupquote{func\_in\_module}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{Cls (class in mod)@\spxentry{Cls}\spxextra{class in mod}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.Cls}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{mod.}}\sphinxbfcode{\sphinxupquote{Cls}}} +\pysigstopsignatures\index{meth1() (mod.Cls method)@\spxentry{meth1()}\spxextra{mod.Cls method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.Cls.meth1}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{meth1}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{meths() (mod.Cls static method)@\spxentry{meths()}\spxextra{mod.Cls static method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.Cls.meths}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{static\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{meths}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{attr (mod.Cls attribute)@\spxentry{attr}\spxextra{mod.Cls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.Cls.attr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{attr}}} +\pysigstopsignatures +\end{fulllineitems} + + +\end{fulllineitems} + +\index{meth2() (mod.Cls method)@\spxentry{meth2()}\spxextra{mod.Cls method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.Cls.meth2}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxcode{\sphinxupquote{Cls.}}\sphinxbfcode{\sphinxupquote{meth2}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{Error@\spxentry{Error}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:errmod.Error}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{exception\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{errmod.}}\sphinxbfcode{\sphinxupquote{Error}}}{\emph{\DUrole{n}{arg1}}, \emph{\DUrole{n}{arg2}}}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{var (in module mod)@\spxentry{var}\spxextra{in module mod}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:mod.var}} +\pysigstartsignatures +\pysigline{\sphinxcode{\sphinxupquote{mod.}}\sphinxbfcode{\sphinxupquote{var}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}!func\_without\_module2()@\spxentry{func\_without\_module2()}}\index{func\_without\_module2()@\spxentry{func\_without\_module2()}!built\sphinxhyphen{}in function@\spxentry{built\sphinxhyphen{}in function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:func_without_module2}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{func\_without\_module2}}}{}{{ $\rightarrow$ annotation}} +\pysigstopsignatures +\end{fulllineitems} + + + +\begin{fulllineitems} + +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{long(parameter,~~~list)}}} +\pysigline{\sphinxbfcode{\sphinxupquote{another~one}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{TimeInt (built\sphinxhyphen{}in class)@\spxentry{TimeInt}\spxextra{built\sphinxhyphen{}in class}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:TimeInt}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{TimeInt}}} +\pysigstopsignatures +\sphinxAtStartPar +Has only one parameter (triggers special behavior…) +\begin{quote}\begin{description} +\sphinxlineitem{Parameters} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{moo}} (Moo) \textendash{} Moo + +\end{description}\end{quote} + +\end{fulllineitems} + +\index{Time (built\sphinxhyphen{}in class)@\spxentry{Time}\spxextra{built\sphinxhyphen{}in class}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:Time}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{Time}}}{\emph{\DUrole{n}{hour}}, \emph{\DUrole{n}{minute}}, \emph{\DUrole{n}{isdst}}}{} +\pysigstopsignatures\begin{quote}\begin{description} +\sphinxlineitem{Parameters}\begin{itemize} +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{year}} ({\hyperref[\detokenize{objects:TimeInt}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{TimeInt}}}}}) \textendash{} The year. + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{minute}} ({\hyperref[\detokenize{objects:TimeInt}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{TimeInt}}}}}) \textendash{} The minute. + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{isdst}} \textendash{} whether it’s DST + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{hour}} (\sphinxstyleliteralemphasis{\sphinxupquote{DuplicateType}}) \textendash{} Some parameter + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{hour}} \textendash{} Duplicate param. Should not lead to crashes. + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{extcls}} (\sphinxstyleliteralemphasis{\sphinxupquote{.Cls}}) \textendash{} A class from another module. + +\end{itemize} + +\sphinxlineitem{Returns} +\sphinxAtStartPar +a new {\hyperref[\detokenize{objects:Time}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Time}}}}} instance + +\sphinxlineitem{Return type} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:Time}]{\sphinxcrossref{Time}}} + +\sphinxlineitem{Raises} +\sphinxAtStartPar +{\hyperref[\detokenize{objects:errmod.Error}]{\sphinxcrossref{\sphinxstyleliteralstrong{\sphinxupquote{Error}}}}} \textendash{} if the values are out of range + +\sphinxlineitem{Variables}\begin{itemize} +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{hour}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} like \sphinxstyleemphasis{hour} + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{minute}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} like \sphinxstyleemphasis{minute} + +\end{itemize} + +\end{description}\end{quote} + +\end{fulllineitems} + + + +\chapter{C items} +\label{\detokenize{objects:c-items}}\index{Sphinx\_DoSomething (C function)@\spxentry{Sphinx\_DoSomething}\spxextra{C function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:c.Sphinx_DoSomething}} +\pysigstartsignatures +\pysigstartmultiline +\pysiglinewithargsret{\DUrole{kt}{void}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{Sphinx\_DoSomething}}}}{}{} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + +\index{SphinxStruct.member (C member)@\spxentry{SphinxStruct.member}\spxextra{C member}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:c.SphinxStruct.member}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\DUrole{kt}{int}\DUrole{w}{ }\sphinxcode{\sphinxupquote{\DUrole{n}{SphinxStruct}\DUrole{p}{.}}}\sphinxbfcode{\sphinxupquote{\DUrole{n}{member}}}} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + +\index{SPHINX\_USE\_PYTHON (C macro)@\spxentry{SPHINX\_USE\_PYTHON}\spxextra{C macro}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:c.SPHINX_USE_PYTHON}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\sphinxbfcode{\sphinxupquote{\DUrole{n}{SPHINX\_USE\_PYTHON}}}} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + +\index{SphinxType (C type)@\spxentry{SphinxType}\spxextra{C type}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:c.SphinxType}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\DUrole{k}{type}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{SphinxType}}}} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + +\index{sphinx\_global (C var)@\spxentry{sphinx\_global}\spxextra{C var}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:c.sphinx_global}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\DUrole{kt}{int}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{sphinx\_global}}}} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Javascript items} +\label{\detokenize{objects:javascript-items}}\index{foo() (built\sphinxhyphen{}in function)@\spxentry{foo()}\spxextra{built\sphinxhyphen{}in function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:foo}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{\DUrole{n}{foo}}}}{}{} +\pysigstopsignatures +\end{fulllineitems} + +\index{bar (global variable or constant)@\spxentry{bar}\spxextra{global variable or constant}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:bar}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\DUrole{n}{bar}}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{bar.baz() (bar method)@\spxentry{bar.baz()}\spxextra{bar method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:bar.baz}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxcode{\sphinxupquote{\DUrole{n}{bar}\DUrole{p}{.}}}\sphinxbfcode{\sphinxupquote{\DUrole{n}{baz}}}}{\emph{\DUrole{n}{href}}, \emph{\DUrole{n}{callback}}\sphinxoptional{, \emph{\DUrole{n}{errback}}}}{} +\pysigstopsignatures\begin{quote}\begin{description} +\sphinxlineitem{Arguments}\begin{itemize} +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{href}} (\sphinxcode{\sphinxupquote{string()}}) \textendash{} The location of the resource. + +\item {} +\sphinxAtStartPar +\sphinxstyleliteralstrong{\sphinxupquote{callback}} \textendash{} Gets called with the data returned by the resource. + +\end{itemize} + +\sphinxlineitem{Throws} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{InvalidHref()}} \textendash{} If the \sphinxtitleref{href} is invalid. + +\sphinxlineitem{Returns} +\sphinxAtStartPar +\sphinxtitleref{undefined} + +\end{description}\end{quote} + +\end{fulllineitems} + +\index{bar.spam (bar attribute)@\spxentry{bar.spam}\spxextra{bar attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:bar.spam}} +\pysigstartsignatures +\pysigline{\sphinxcode{\sphinxupquote{\DUrole{n}{bar}\DUrole{p}{.}}}\sphinxbfcode{\sphinxupquote{\DUrole{n}{spam}}}} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{References} +\label{\detokenize{objects:references}} +\sphinxAtStartPar +Referencing {\hyperref[\detokenize{objects:mod.Cls}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{mod.Cls}}}}} or {\hyperref[\detokenize{objects:mod.Cls}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{mod.Cls}}}}} should be the same. + +\sphinxAtStartPar +With target: {\hyperref[\detokenize{objects:c.Sphinx_DoSomething}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Sphinx\_DoSomething()}}}}} (parentheses are handled), +{\hyperref[\detokenize{objects:c.SphinxStruct.member}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{SphinxStruct.member}}}}}, {\hyperref[\detokenize{objects:c.SPHINX_USE_PYTHON}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{SPHINX\_USE\_PYTHON}}}}}, +\sphinxcode{\sphinxupquote{SphinxType *}} (pointer is handled), {\hyperref[\detokenize{objects:c.sphinx_global}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{sphinx\_global}}}}}. + +\sphinxAtStartPar +Without target: \sphinxcode{\sphinxupquote{CFunction()}}. \sphinxcode{\sphinxupquote{malloc()}}. + +\sphinxAtStartPar +{\hyperref[\detokenize{objects:foo}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{foo()}}}}} +{\hyperref[\detokenize{objects:foo}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{foo()}}}}} + +\sphinxAtStartPar +{\hyperref[\detokenize{objects:bar}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{bar}}}}} +{\hyperref[\detokenize{objects:bar.baz}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{bar.baz()}}}}} +{\hyperref[\detokenize{objects:bar.baz}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{bar.baz()}}}}} +{\hyperref[\detokenize{objects:bar.baz}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{baz()}}}}} + +\sphinxAtStartPar +{\hyperref[\detokenize{objects:bar.baz}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{bar.baz}}}}} + + +\chapter{Others} +\label{\detokenize{objects:others}}\index{environment variable@\spxentry{environment variable}!HOME@\spxentry{HOME}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:envvar-HOME}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{HOME}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{python command line option@\spxentry{python command line option}!\sphinxhyphen{}c@\spxentry{\sphinxhyphen{}c}}\index{\sphinxhyphen{}c@\spxentry{\sphinxhyphen{}c}!python command line option@\spxentry{python command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-python-c}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}c}}\sphinxcode{\sphinxupquote{~command}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!\sphinxhyphen{}c@\spxentry{\sphinxhyphen{}c}}\index{\sphinxhyphen{}c@\spxentry{\sphinxhyphen{}c}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-c}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}c}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!+p@\spxentry{+p}}\index{+p@\spxentry{+p}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-arg-p}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{+p}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!\sphinxhyphen{}\sphinxhyphen{}ObjC++@\spxentry{\sphinxhyphen{}\sphinxhyphen{}ObjC++}}\index{\sphinxhyphen{}\sphinxhyphen{}ObjC++@\spxentry{\sphinxhyphen{}\sphinxhyphen{}ObjC++}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-ObjC}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}\sphinxhyphen{}ObjC++}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!\sphinxhyphen{}\sphinxhyphen{}plugin.option@\spxentry{\sphinxhyphen{}\sphinxhyphen{}plugin.option}}\index{\sphinxhyphen{}\sphinxhyphen{}plugin.option@\spxentry{\sphinxhyphen{}\sphinxhyphen{}plugin.option}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-plugin.option}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}\sphinxhyphen{}plugin.option}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!create\sphinxhyphen{}auth\sphinxhyphen{}token@\spxentry{create\sphinxhyphen{}auth\sphinxhyphen{}token}}\index{create\sphinxhyphen{}auth\sphinxhyphen{}token@\spxentry{create\sphinxhyphen{}auth\sphinxhyphen{}token}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-arg-create-auth-token}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{create\sphinxhyphen{}auth\sphinxhyphen{}token}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!arg@\spxentry{arg}}\index{arg@\spxentry{arg}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-arg-arg}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{arg}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{perl command line option@\spxentry{perl command line option}!\sphinxhyphen{}j@\spxentry{\sphinxhyphen{}j}}\index{\sphinxhyphen{}j@\spxentry{\sphinxhyphen{}j}!perl command line option@\spxentry{perl command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-perl-j}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}j}}\sphinxcode{\sphinxupquote{{[}=N{]}}}} +\pysigstopsignatures +\end{fulllineitems} + + +\sphinxAtStartPar +Link to {\hyperref[\detokenize{objects:cmdoption-perl-arg-p}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{perl +p}}}}}, {\hyperref[\detokenize{objects:cmdoption-perl-ObjC}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{\sphinxhyphen{}\sphinxhyphen{}ObjC++}}}}}, {\hyperref[\detokenize{objects:cmdoption-perl-plugin.option}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{\sphinxhyphen{}\sphinxhyphen{}plugin.option}}}}}, {\hyperref[\detokenize{objects:cmdoption-perl-arg-create-auth-token}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{create\sphinxhyphen{}auth\sphinxhyphen{}token}}}}}, {\hyperref[\detokenize{objects:cmdoption-perl-arg-arg}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{arg}}}}} and {\hyperref[\detokenize{objects:cmdoption-perl-j}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{\sphinxhyphen{}j}}}}} +\index{hg command line option@\spxentry{hg command line option}!commit@\spxentry{commit}}\index{commit@\spxentry{commit}!hg command line option@\spxentry{hg command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-hg-arg-commit}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{commit}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + +\index{git\sphinxhyphen{}commit command line option@\spxentry{git\sphinxhyphen{}commit command line option}!\sphinxhyphen{}p@\spxentry{\sphinxhyphen{}p}}\index{\sphinxhyphen{}p@\spxentry{\sphinxhyphen{}p}!git\sphinxhyphen{}commit command line option@\spxentry{git\sphinxhyphen{}commit command line option}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:cmdoption-git-commit-p}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{\sphinxhyphen{}p}}\sphinxcode{\sphinxupquote{}}} +\pysigstopsignatures +\end{fulllineitems} + + +\sphinxAtStartPar +Link to {\hyperref[\detokenize{objects:cmdoption-hg-arg-commit}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{hg commit}}}}} and {\hyperref[\detokenize{objects:cmdoption-git-commit-p}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{git commit \sphinxhyphen{}p}}}}}. + + +\chapter{User markup} +\label{\detokenize{objects:user-markup}}\index{myobj (userdesc)@\spxentry{myobj}\spxextra{userdesc}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:userdesc-myobj}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{myobj}}}{\emph{parameter}}{} +\pysigstopsignatures +\sphinxAtStartPar +Description of userdesc. + +\end{fulllineitems} + + +\sphinxAtStartPar +Referencing {\hyperref[\detokenize{objects:userdesc-myobj}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{myobj}}}}}. + + +\chapter{CPP domain} +\label{\detokenize{objects:cpp-domain}}\index{n::Array (C++ class)@\spxentry{n::Array}\spxextra{C++ class}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:_CPPv4N1n5ArrayE}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\DUrole{k}{class}\DUrole{w}{ }\sphinxcode{\sphinxupquote{\DUrole{n}{n}\DUrole{p}{::}}}\sphinxbfcode{\sphinxupquote{\DUrole{n}{Array}}}} +\pysigstopmultiline +\pysigstopsignatures\index{n::Array::operator{[}{]} (C++ function)@\spxentry{n::Array::operator{[}{]}}\spxextra{C++ function}}\index{n::Array::operator{[}{]} (C++ function)@\spxentry{n::Array::operator{[}{]}}\spxextra{C++ function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:_CPPv4N1n5ArrayixEj}} +\pysigstartsignatures +\pysigstartmultiline +\pysiglinewithargsret{\DUrole{n}{T}\DUrole{w}{ }\DUrole{p}{\&}\sphinxbfcode{\sphinxupquote{\DUrole{k}{operator}\DUrole{o}{{[}{]}}}}}{\DUrole{kt}{unsigned}\DUrole{w}{ }\DUrole{n,sig-param}{j}}{} +\pysigstopmultiline\phantomsection\label{\detokenize{objects:_CPPv4NK1n5ArrayixEj}} +\pysigstartmultiline +\pysiglinewithargsret{\DUrole{k}{const}\DUrole{w}{ }\DUrole{n}{T}\DUrole{w}{ }\DUrole{p}{\&}\sphinxbfcode{\sphinxupquote{\DUrole{k}{operator}\DUrole{o}{{[}{]}}}}}{\DUrole{kt}{unsigned}\DUrole{w}{ }\DUrole{n,sig-param}{j}}{\DUrole{w}{ }\DUrole{k}{const}} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + + +\end{fulllineitems} + +\index{f (C++ function)@\spxentry{f}\spxextra{C++ function}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{objects:_CPPv4I00EIQ1AI2T12T2EE1fvv}} +\pysigstartsignatures +\pysigstartmultiline +\pysigline{\DUrole{k}{template}\DUrole{p}{\textless{}}\DUrole{k}{typename}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{T1}}}\DUrole{p}{,}\DUrole{w}{ }\DUrole{k}{typename}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{T2}}}\DUrole{p}{\textgreater{}}} +\pysigline{\DUrole{k}{requires}\DUrole{w}{ }\DUrole{n}{A}\DUrole{p}{\textless{}}{\hyperref[\detokenize{objects:_CPPv4I00EIQ1AI2T12T2EE1fvv}]{\sphinxcrossref{\DUrole{n}{T1}}}}\DUrole{p}{,}\DUrole{w}{ }{\hyperref[\detokenize{objects:_CPPv4I00EIQ1AI2T12T2EE1fvv}]{\sphinxcrossref{\DUrole{n}{T2}}}}\DUrole{p}{\textgreater{}}} +\pysiglinewithargsret{\DUrole{kt}{void}\DUrole{w}{ }\sphinxbfcode{\sphinxupquote{\DUrole{n}{f}}}}{}{} +\pysigstopmultiline +\pysigstopsignatures +\end{fulllineitems} + +\begin{itemize} +\item {} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{\DUrole{n}{a}\DUrole{w}{ }\DUrole{o}{+}\DUrole{w}{ }\DUrole{n}{b}}} + +\end{itemize} + +\sphinxstepscope + + +\chapter{File with UTF\sphinxhyphen{}8 BOM} +\label{\detokenize{bom:file-with-utf-8-bom}}\label{\detokenize{bom::doc}} +\sphinxAtStartPar +This file has a UTF\sphinxhyphen{}8 “BOM”. + +\sphinxstepscope + + +\chapter{Test math extensions \protect\(E = m c^2\protect\)} +\label{\detokenize{math:test-math-extensions-e-m-c-2}}\label{\detokenize{math::doc}} +\sphinxAtStartPar +This is inline math: \(a^2 + b^2 = c^2\). +\begin{equation*} +\begin{split}a^2 + b^2 = c^2\end{split} +\end{equation*}\begin{equation*} +\begin{split}a + 1 < b\end{split} +\end{equation*}\begin{equation}\label{equation:math:foo} +\begin{split}e^{i\pi} = 1\end{split} +\end{equation}\begin{equation}\label{equation:math:math:0} +\begin{split}e^{ix} = \cos x + i\sin x\end{split} +\end{equation}\begin{equation*} +\begin{split}n \in \mathbb N\end{split} +\end{equation*}a + 1 < b +\sphinxAtStartPar +Referencing equation \eqref{equation:math:foo}. + +\sphinxstepscope + + +\chapter{Autodoc tests} +\label{\detokenize{autodoc:autodoc-tests}}\label{\detokenize{autodoc::doc}} +\sphinxAtStartPar +Just testing a few autodoc possibilities… + +\phantomsection\label{\detokenize{autodoc:module-autodoc_target}}\index{module@\spxentry{module}!autodoc\_target@\spxentry{autodoc\_target}}\index{autodoc\_target@\spxentry{autodoc\_target}!module@\spxentry{module}}\index{Class (class in autodoc\_target)@\spxentry{Class}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{Class}}}{\emph{\DUrole{n}{arg}}}{} +\pysigstopsignatures +\sphinxAtStartPar +Class to document. +\index{attr (autodoc\_target.Class attribute)@\spxentry{attr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.attr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{attr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}bar\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented \textendash{} süß + +\end{fulllineitems} + +\index{descr (autodoc\_target.Class attribute)@\spxentry{descr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.descr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{descr}}} +\pysigstopsignatures +\sphinxAtStartPar +Descriptor instance docstring. + +\end{fulllineitems} + +\index{docattr (autodoc\_target.Class attribute)@\spxentry{docattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.docattr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{docattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}baz\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should likewise be documented \textendash{} süß + +\end{fulllineitems} + +\index{excludemeth() (autodoc\_target.Class method)@\spxentry{excludemeth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.excludemeth}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{excludemeth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Method that should be excluded. + +\end{fulllineitems} + +\index{inst\_attr\_comment (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_comment}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.inst_attr_comment}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_comment}}} +\pysigstopsignatures +\sphinxAtStartPar +a documented instance attribute + +\end{fulllineitems} + +\index{inst\_attr\_inline (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_inline}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.inst_attr_inline}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_inline}}} +\pysigstopsignatures +\sphinxAtStartPar +an inline documented instance attr + +\end{fulllineitems} + +\index{inst\_attr\_string (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_string}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.inst_attr_string}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_string}}} +\pysigstopsignatures +\sphinxAtStartPar +a documented instance attribute + +\end{fulllineitems} + +\index{mdocattr (autodoc\_target.Class attribute)@\spxentry{mdocattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.mdocattr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{mdocattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textless{}\_io.StringIO object\textgreater{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented as well \sphinxhyphen{} süß + +\end{fulllineitems} + +\index{meth() (autodoc\_target.Class method)@\spxentry{meth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.meth}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{meth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Function. + +\end{fulllineitems} + +\index{moore() (autodoc\_target.Class class method)@\spxentry{moore()}\spxextra{autodoc\_target.Class class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.moore}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{classmethod\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{moore}}}{\emph{\DUrole{n}{a}}, \emph{\DUrole{n}{e}}, \emph{\DUrole{n}{f}}}{{ $\rightarrow$ happiness}} +\pysigstopsignatures +\end{fulllineitems} + +\index{prop (autodoc\_target.Class property)@\spxentry{prop}\spxextra{autodoc\_target.Class property}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.prop}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{property\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{prop}}} +\pysigstopsignatures +\sphinxAtStartPar +Property. + +\end{fulllineitems} + +\index{skipmeth() (autodoc\_target.Class method)@\spxentry{skipmeth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.skipmeth}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{skipmeth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Method that should be skipped. + +\end{fulllineitems} + +\index{udocattr (autodoc\_target.Class attribute)@\spxentry{udocattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.udocattr}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{udocattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}quux\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented as well \sphinxhyphen{} süß + +\end{fulllineitems} + + +\end{fulllineitems} + +\index{function() (in module autodoc\_target)@\spxentry{function()}\spxextra{in module autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.function}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{function}}}{\emph{\DUrole{n}{foo}}, \emph{\DUrole{o}{*}\DUrole{n}{args}}, \emph{\DUrole{o}{**}\DUrole{n}{kwds}}}{} +\pysigstopsignatures +\sphinxAtStartPar +Return spam. + +\end{fulllineitems} + +\index{Class (class in autodoc\_target)@\spxentry{Class}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id0}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{Class}}}{\emph{\DUrole{n}{arg}}}{} +\pysigstopsignatures +\sphinxAtStartPar +Class to document. + +\sphinxAtStartPar +Additional content. +\index{attr (autodoc\_target.Class attribute)@\spxentry{attr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id1}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{attr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}bar\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented \textendash{} süß + +\end{fulllineitems} + +\index{descr (autodoc\_target.Class attribute)@\spxentry{descr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id2}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{descr}}} +\pysigstopsignatures +\sphinxAtStartPar +Descriptor instance docstring. + +\end{fulllineitems} + +\index{docattr (autodoc\_target.Class attribute)@\spxentry{docattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id3}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{docattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}baz\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should likewise be documented \textendash{} süß + +\end{fulllineitems} + +\index{excludemeth() (autodoc\_target.Class method)@\spxentry{excludemeth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id4}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{excludemeth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Method that should be excluded. + +\end{fulllineitems} + +\index{inheritedmeth() (autodoc\_target.Class method)@\spxentry{inheritedmeth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Class.inheritedmeth}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{inheritedmeth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Inherited function. + +\end{fulllineitems} + +\index{inst\_attr\_comment (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_comment}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id5}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_comment}}} +\pysigstopsignatures +\sphinxAtStartPar +a documented instance attribute + +\end{fulllineitems} + +\index{inst\_attr\_inline (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_inline}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id6}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_inline}}} +\pysigstopsignatures +\sphinxAtStartPar +an inline documented instance attr + +\end{fulllineitems} + +\index{inst\_attr\_string (autodoc\_target.Class attribute)@\spxentry{inst\_attr\_string}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id7}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{inst\_attr\_string}}} +\pysigstopsignatures +\sphinxAtStartPar +a documented instance attribute + +\end{fulllineitems} + +\index{mdocattr (autodoc\_target.Class attribute)@\spxentry{mdocattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id8}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{mdocattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textless{}\_io.StringIO object\textgreater{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented as well \sphinxhyphen{} süß + +\end{fulllineitems} + +\index{meth() (autodoc\_target.Class method)@\spxentry{meth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id9}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{meth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Function. + +\end{fulllineitems} + +\index{moore() (autodoc\_target.Class class method)@\spxentry{moore()}\spxextra{autodoc\_target.Class class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id10}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{classmethod\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{moore}}}{\emph{\DUrole{n}{a}}, \emph{\DUrole{n}{e}}, \emph{\DUrole{n}{f}}}{{ $\rightarrow$ happiness}} +\pysigstopsignatures +\end{fulllineitems} + +\index{prop (autodoc\_target.Class property)@\spxentry{prop}\spxextra{autodoc\_target.Class property}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id11}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{property\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{prop}}} +\pysigstopsignatures +\sphinxAtStartPar +Property. + +\end{fulllineitems} + +\index{skipmeth() (autodoc\_target.Class method)@\spxentry{skipmeth()}\spxextra{autodoc\_target.Class method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id12}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{skipmeth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Method that should be skipped. + +\end{fulllineitems} + +\index{udocattr (autodoc\_target.Class attribute)@\spxentry{udocattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id13}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{udocattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}quux\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should be documented as well \sphinxhyphen{} süß + +\end{fulllineitems} + + +\end{fulllineitems} + +\index{Outer (class in autodoc\_target)@\spxentry{Outer}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Outer}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{Outer}}} +\pysigstopsignatures +\sphinxAtStartPar +Foo +\index{Outer.Inner (class in autodoc\_target)@\spxentry{Outer.Inner}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Outer.Inner}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{Inner}}} +\pysigstopsignatures +\sphinxAtStartPar +Foo +\index{meth() (autodoc\_target.Outer.Inner method)@\spxentry{meth()}\spxextra{autodoc\_target.Outer.Inner method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.Outer.Inner.meth}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{meth}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Foo + +\end{fulllineitems} + + +\end{fulllineitems} + + +\end{fulllineitems} + +\index{docattr (autodoc\_target.Class attribute)@\spxentry{docattr}\spxextra{autodoc\_target.Class attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id14}} +\pysigstartsignatures +\pysigline{\sphinxcode{\sphinxupquote{Class.}}\sphinxbfcode{\sphinxupquote{docattr}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}baz\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +should likewise be documented \textendash{} süß + +\end{fulllineitems} + +\index{CustomEx@\spxentry{CustomEx}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.CustomEx}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{exception\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{CustomEx}}} +\pysigstopsignatures +\sphinxAtStartPar +My custom exception. +\index{f() (autodoc\_target.CustomEx method)@\spxentry{f()}\spxextra{autodoc\_target.CustomEx method}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.CustomEx.f}} +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{f}}}{}{} +\pysigstopsignatures +\sphinxAtStartPar +Exception method. + +\end{fulllineitems} + + +\end{fulllineitems} + +\index{CustomDict (class in autodoc\_target)@\spxentry{CustomDict}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.CustomDict}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{CustomDict}}} +\pysigstopsignatures +\sphinxAtStartPar +Bases: \sphinxcode{\sphinxupquote{dict}} + +\sphinxAtStartPar +Docstring. + +\end{fulllineitems} + +\index{InstAttCls (class in autodoc\_target)@\spxentry{InstAttCls}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{InstAttCls}}} +\pysigstopsignatures +\sphinxAtStartPar +Class with documented class and instance attributes. + +\sphinxAtStartPar +All members (5 total) +\index{ca1 (autodoc\_target.InstAttCls attribute)@\spxentry{ca1}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls.ca1}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ca1}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}a\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +Doc comment for class attribute InstAttCls.ca1. +It can have multiple lines. + +\end{fulllineitems} + +\index{ca2 (autodoc\_target.InstAttCls attribute)@\spxentry{ca2}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls.ca2}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ca2}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}b\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +Doc comment for InstAttCls.ca2. One line only. + +\end{fulllineitems} + +\index{ca3 (autodoc\_target.InstAttCls attribute)@\spxentry{ca3}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls.ca3}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ca3}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}c\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +Docstring for class attribute InstAttCls.ca3. + +\end{fulllineitems} + +\index{ia1 (autodoc\_target.InstAttCls attribute)@\spxentry{ia1}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls.ia1}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ia1}}} +\pysigstopsignatures +\sphinxAtStartPar +Doc comment for instance attribute InstAttCls.ia1 + +\end{fulllineitems} + +\index{ia2 (autodoc\_target.InstAttCls attribute)@\spxentry{ia2}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:autodoc_target.InstAttCls.ia2}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ia2}}} +\pysigstopsignatures +\sphinxAtStartPar +Docstring for instance attribute InstAttCls.ia2. + +\end{fulllineitems} + + +\end{fulllineitems} + +\index{InstAttCls (class in autodoc\_target)@\spxentry{InstAttCls}\spxextra{class in autodoc\_target}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id15}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{class\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{autodoc\_target.}}\sphinxbfcode{\sphinxupquote{InstAttCls}}} +\pysigstopsignatures +\sphinxAtStartPar +Class with documented class and instance attributes. + +\sphinxAtStartPar +Specific members (2 total) +\index{ca1 (autodoc\_target.InstAttCls attribute)@\spxentry{ca1}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id16}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ca1}}\sphinxbfcode{\sphinxupquote{\DUrole{w}{ }\DUrole{p}{=}\DUrole{w}{ }\textquotesingle{}a\textquotesingle{}}}} +\pysigstopsignatures +\sphinxAtStartPar +Doc comment for class attribute InstAttCls.ca1. +It can have multiple lines. + +\end{fulllineitems} + +\index{ia1 (autodoc\_target.InstAttCls attribute)@\spxentry{ia1}\spxextra{autodoc\_target.InstAttCls attribute}} + +\begin{fulllineitems} +\phantomsection\label{\detokenize{autodoc:id17}} +\pysigstartsignatures +\pysigline{\sphinxbfcode{\sphinxupquote{ia1}}} +\pysigstopsignatures +\sphinxAtStartPar +Doc comment for instance attribute InstAttCls.ia1 + +\end{fulllineitems} + + +\end{fulllineitems} + + +\sphinxstepscope + + +\chapter{Test for diverse extensions} +\label{\detokenize{extensions:test-for-diverse-extensions}}\label{\detokenize{extensions::doc}} + +\section{extlinks} +\label{\detokenize{extensions:extlinks}} +\sphinxAtStartPar +Test diverse links: \sphinxhref{http://bugs.python.org/issue1000}{issue 1000} and \sphinxurl{http://python.org/dev/}, also with +\sphinxhref{http://bugs.python.org/issue1042}{explicit caption}. + + +\section{todo} +\label{\detokenize{extensions:todo}} + +\subsection{list of all todos} +\label{\detokenize{extensions:list-of-all-todos}} +\sphinxstepscope + + +\chapter{Testing footnote and citation} +\label{\detokenize{footnote:testing-footnote-and-citation}}\label{\detokenize{footnote::doc}} + +\section{numbered footnote} +\label{\detokenize{footnote:numbered-footnote}} +\sphinxAtStartPar +% +\begin{footnote}[1]\sphinxAtStartFootnote +numbered +% +\end{footnote} + + +\section{auto\sphinxhyphen{}numbered footnote} +\label{\detokenize{footnote:auto-numbered-footnote}} +\sphinxAtStartPar +% +\begin{footnote}[2]\sphinxAtStartFootnote +auto numbered +% +\end{footnote} + + +\section{named footnote} +\label{\detokenize{footnote:named-footnote}} +\sphinxAtStartPar +% +\begin{footnote}[3]\sphinxAtStartFootnote +named +% +\end{footnote} + + +\section{citation} +\label{\detokenize{footnote:citation}} +\sphinxAtStartPar +\sphinxcite{footnote:bar} +\sphinxcite{footnote:baz-qux} + + +\section{footnotes in table} +\label{\detokenize{footnote:footnotes-in-table}} + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{Table caption \sphinxfootnotemark[4]}\label{\detokenize{footnote:id14}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name \sphinxfootnotemark[5] +&\sphinxstyletheadfamily +\sphinxAtStartPar +description +\\ +\hline% +\begin{footnotetext}[4]\sphinxAtStartFootnote +footnote in table caption +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[5]\sphinxAtStartFootnote +footnote in table header +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +VIDIOC\_CROPCAP +& +\sphinxAtStartPar +Information about VIDIOC\_CROPCAP % +\begin{footnote}[6]\sphinxAtStartFootnote +footnote in table not in header +% +\end{footnote} +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} + + +\section{footenotes} +\label{\detokenize{footnote:footenotes}}\subsubsection*{Citations} + +\sphinxstepscope + + +\chapter{Various kinds of lists} +\label{\detokenize{lists:various-kinds-of-lists}}\label{\detokenize{lists::doc}} + +\section{nested enumerated lists} +\label{\detokenize{lists:nested-enumerated-lists}}\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumi}{enumii}{}{.}% +\item {} +\sphinxAtStartPar +one + +\item {} +\sphinxAtStartPar +two +\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumii}{enumiii}{}{.}% +\item {} +\sphinxAtStartPar +two.1 + +\item {} +\sphinxAtStartPar +two.2 + +\end{enumerate} + +\item {} +\sphinxAtStartPar +three + +\end{enumerate} + + +\section{enumerated lists with non\sphinxhyphen{}default start values} +\label{\detokenize{lists:enumerated-lists-with-non-default-start-values}}\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumi}{enumii}{}{.}% +\setcounter{enumi}{-1} +\item {} +\sphinxAtStartPar +zero + +\item {} +\sphinxAtStartPar +one + +\end{enumerate} + + +\bigskip\hrule\bigskip + +\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumi}{enumii}{}{.}% +\item {} +\sphinxAtStartPar +one + +\item {} +\sphinxAtStartPar +two + +\end{enumerate} + + +\bigskip\hrule\bigskip + +\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumi}{enumii}{}{.}% +\setcounter{enumi}{1} +\item {} +\sphinxAtStartPar +two + +\item {} +\sphinxAtStartPar +three + +\end{enumerate} + + +\section{enumerated lists using letters} +\label{\detokenize{lists:enumerated-lists-using-letters}}\begin{enumerate} +\sphinxsetlistlabels{\alph}{enumi}{enumii}{}{.}% +\item {} +\sphinxAtStartPar +a + +\item {} +\sphinxAtStartPar +b + +\item {} +\sphinxAtStartPar +c + +\item {} +\sphinxAtStartPar +d + +\end{enumerate} + + +\bigskip\hrule\bigskip + +\begin{enumerate} +\sphinxsetlistlabels{\arabic}{enumi}{enumii}{}{.}% +\setcounter{enumi}{23} +\item {} +\sphinxAtStartPar +x + +\item {} +\sphinxAtStartPar +y + +\item {} +\sphinxAtStartPar +z + +\item {} +\sphinxAtStartPar +\{ + +\end{enumerate} + + +\section{definition lists} +\label{\detokenize{lists:definition-lists}}\begin{description} +\sphinxlineitem{term1} +\sphinxAtStartPar +description + +\sphinxlineitem{term2 (\sphinxstylestrong{stronged partially})} +\sphinxAtStartPar +description + +\end{description} + + +\section{Samp tests} +\label{\detokenize{lists:samp-tests}} +\sphinxAtStartPar +\sphinxcode{\sphinxupquote{\sphinxstyleemphasis{variable\_only}}} +\sphinxcode{\sphinxupquote{\sphinxstyleemphasis{variable} and text}} +\sphinxcode{\sphinxupquote{Show \sphinxstyleemphasis{variable} in the middle}} + +\sphinxstepscope + + +\chapter{Generated section} +\label{\detokenize{otherext:id1}}\label{\detokenize{otherext::doc}} + +\chapter{Indices and tables} +\label{\detokenize{index:indices-and-tables}}\begin{itemize} +\item {} +\sphinxAtStartPar +\DUrole{xref,std,std-ref}{genindex} + +\item {} +\sphinxAtStartPar +\DUrole{xref,std,std-ref}{modindex} + +\end{itemize} + + +\chapter{References} +\label{\detokenize{index:references}} + +\chapter{Test for issue \#1157} +\label{\detokenize{index:test-for-issue-1157}} +\sphinxAtStartPar +This used to crash: + + +\chapter{Test for issue \#1700} +\label{\detokenize{index:test-for-issue-1700}} +\sphinxAtStartPar +{\hyperref[\detokenize{index:mastertoc}]{\sphinxcrossref{\DUrole{std,std-ref}{Table of Contents}}}} + + +\chapter{Test for indirect hyperlink targets} +\label{\detokenize{index:test-for-indirect-hyperlink-targets}} +\sphinxAtStartPar +{\hyperref[\detokenize{markup:some-label}]{\sphinxcrossref{\DUrole{std,std-ref}{indirect hyperref}}}} + +\begin{sphinxthebibliography}{baz\_qux} +\bibitem[bar]{footnote:bar} +\sphinxAtStartPar +cite +\bibitem[baz\_qux]{footnote:baz-qux} +\sphinxAtStartPar +citation including underscore +\bibitem[Ref1]{index:ref1} +\sphinxAtStartPar +Reference target. +\bibitem[Ref\_1]{index:ref-1} +\sphinxAtStartPar +Reference target 2. +\end{sphinxthebibliography} + + +\renewcommand{\indexname}{Python Module Index} +\begin{sphinxtheindex} +\let\bigletter\sphinxstyleindexlettergroup +\bigletter{a} +\item\relax\sphinxstyleindexentry{autodoc\_target}\sphinxstyleindexpageref{autodoc:\detokenize{module-autodoc_target}} +\indexspace +\bigletter{m} +\item\relax\sphinxstyleindexentry{mod}\sphinxstyleindexextra{UNIX}\sphinxstyleindexpageref{objects:\detokenize{module-mod}} +\end{sphinxtheindex} + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing sphinxtests.tex... index extapi images subdir/images subdir/includes includes markup objects bom math autodoc extensions footnote lists otherext +resolving references... +done +writing... done +copying images... [ 12%] img.png copying images... [ 25%] subdir/img.png copying images... [ 37%] img.pdf copying images... [ 50%] https://www.python.org/static/img/python-logo.png copying images... [ 62%] subdir/simg.png copying images... [ 75%] svgimg.pdf copying images... [ 87%] img.foo.png copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done +copying additional files...  svgimg.svgdone + +/tmp/pytest-of-root/pytest-0/root/objects.txt:143: WARNING: Unparseable C cross-reference: 'SphinxType *' +Invalid C declaration: Expected end of definition. [error at 11] + SphinxType * + -----------^ + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing sphinxtests.tex... index extapi images subdir/images subdir/includes includes markup objects bom math autodoc extensions footnote lists otherext +resolving references... +done +writing... done +copying images... [ 12%] img.png copying images... [ 25%] subdir/img.png copying images... [ 37%] img.pdf copying images... [ 50%] https://www.python.org/static/img/python-logo.png copying images... [ 62%] subdir/simg.png copying images... [ 75%] svgimg.pdf copying images... [ 87%] img.foo.png copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done +copying additional files...  svgimg.svgdone + +# warning: +/tmp/pytest-of-root/pytest-0/root/objects.txt:143: WARNING: Unparseable C cross-reference: 'SphinxType *' +Invalid C declaration: Expected end of definition. [error at 11] + SphinxType * + -----------^ + +_____________ test_reference_in_caption_and_codeblock_in_footnote ______________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[2]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +Third \sphinxfootnotemark[4] +% +\end{footnote}% +\begin{footnotetext}[4]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[5]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[6]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[6]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}} +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[7]}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}} +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[8].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[8]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[9] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[10] in caption \sphinxfootnotemark[11] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[10]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[11]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[12]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[13]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[13] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] baz reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] baz reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +____________________ test_footnote_referred_multiple_times _____________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[2]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +Third \sphinxfootnotemark[4] +% +\end{footnote}% +\begin{footnotetext}[4]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[5]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[6]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[6]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}} +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[7]}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}} +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[8].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[8]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[9] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[10] in caption \sphinxfootnotemark[11] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[10]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[11]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[12]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[13]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[13] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +________________________ test_latex_show_urls_is_inline ________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[2]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx} (http://sphinx\sphinxhyphen{}doc.org/) + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +Third \sphinxfootnotemark[4] +% +\end{footnote}% +\begin{footnotetext}[4]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[5]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde} (http://sphinx\sphinxhyphen{}doc.org/\textasciitilde{}test/) + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[6]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[6]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term} (http://sphinx\sphinxhyphen{}doc.org/)} +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[7]}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist} (http://sphinx\sphinxhyphen{}doc.org/)} +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[8].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[8]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[9] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[10] in caption \sphinxfootnotemark[11] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[10]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[11]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[12]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[13]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[13] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +_______________________ test_latex_show_urls_is_footnote _______________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[2]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx}% +\begin{footnote}[4]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[6]\sphinxAtStartFootnote +Third \sphinxfootnotemark[7] +% +\end{footnote}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[8]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde}% +\begin{footnote}[5]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/~test/} +% +\end{footnote} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[9]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}\sphinxfootnotemark[10]}% +\begin{footnotetext}[10]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[12]}% +\begin{footnotetext}[12]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}\sphinxfootnotemark[11]}% +\begin{footnotetext}[11]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[13].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[13]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[14] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[14]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[15] in caption \sphinxfootnotemark[16] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[15]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[16]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[17]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{savenotes}\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems}\end{savenotes} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[18]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[18] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +__________________________ test_latex_show_urls_is_no __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[2]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +Third \sphinxfootnotemark[4] +% +\end{footnote}% +\begin{footnotetext}[4]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[5]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[6]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[6]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}} +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[7]}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}} +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[8].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[8]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[9] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[10] in caption \sphinxfootnotemark[11] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[10]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[11]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[12]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[13]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[13] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +_______________ test_latex_show_urls_footnote_and_substitutions ________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[2]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx}% +\begin{footnote}[4]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[6]\sphinxAtStartFootnote +Third \sphinxfootnotemark[7] +% +\end{footnote}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[8]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde}% +\begin{footnote}[5]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/~test/} +% +\end{footnote} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[9]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}\sphinxfootnotemark[10]}% +\begin{footnotetext}[10]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[12]}% +\begin{footnotetext}[12]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}\sphinxfootnotemark[11]}% +\begin{footnotetext}[11]\sphinxAtStartFootnote +\sphinxnolinkurl{http://sphinx-doc.org/} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[13].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[13]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[14] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[14]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[15] in caption \sphinxfootnotemark[16] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[15]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[16]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[17]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{savenotes}\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems}\end{savenotes} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[18]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[18] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('rst_prolog')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] baz reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('rst_prolog')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] baz reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +____________________________ test_image_in_section _____________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxAtStartPar +this is dummy content + + +\chapter[Test section]{\lowercase{\sphinxincludegraphics[width=15bp,height=15bp]}{{pic}.png} Test section} +\label{\detokenize{index:picture-test-section}} +\sphinxAtStartPar +blah blah blah + + +\chapter{Another section} +\label{\detokenize{index:another-section}} +\sphinxAtStartPar +another blah + + +\chapter[Other {[}blah{]} section]{Other {[}blah{]} \lowercase{\sphinxincludegraphics[width=15bp,height=15bp]}{{pic}.png} section} +\label{\detokenize{index:other-blah-picture-section}} +\sphinxAtStartPar +other blah + + +\chapter[]{\lowercase{\sphinxincludegraphics[width=15bp,height=15bp]}{{pic}.png}} +\label{\detokenize{index:picture}} +\sphinxAtStartPar +blah blah blah + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [100%] pic.png +copying TeX support files... copying TeX support files... +done + + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/image-in-section +# outdir: /tmp/pytest-of-root/pytest-0/image-in-section/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [100%] pic.png +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing test.tex... index +resolving references... +done +writing... done + +# warning: + +_________________________ test_toctree_maxdepth_manual _________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{1} + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\section{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\section{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\section{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\section{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +_________________________ test_toctree_maxdepth_howto __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{article} +\documentclass[letterpaper,10pt,english]{sphinxhowto} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{2} + + + +\title{Sphinx Tests Documentation} +\date{Jul 07, 2026} +\release{} +\author{Georg Brandl} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\section{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\subsection{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsubsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\subsection{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsubsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\section{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\subsection{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsubsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\subsection{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsubsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +____________________________ test_toctree_not_found ____________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{foo::doc}} + + +\sphinxAtStartPar +should be 1 + + +\chapter{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\section{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\chapter{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\section{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... foo +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... foo +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +________________________ test_toctree_without_maxdepth _________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{bar::doc}} + + +\sphinxAtStartPar +should be 2 + + +\chapter{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\section{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\chapter{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\section{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +______________________ test_toctree_with_deeper_maxdepth _______________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{3} +\setcounter{secnumdepth}{3} + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{qux::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\section{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\section{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\section{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\section{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... qux foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... qux foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst: WARNING: document isn't included in any toctree + +____________________ test_latex_toplevel_sectioning_is_None ____________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{1} + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\section{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\section{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\section{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\section{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('root_doc')] 5 added, 0 changed, 0 removed +reading sources... [ 20%] bar reading sources... [ 40%] baz reading sources... [ 60%] foo reading sources... [ 80%] index reading sources... [100%] qux +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/qux.rst: WARNING: document isn't included in any toctree + +____________________ test_latex_toplevel_sectioning_is_part ____________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{0} + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\part{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\chapter{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\section{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\chapter{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\section{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\part{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\chapter{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\section{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\chapter{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\section{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +______________ test_latex_toplevel_sectioning_is_part_with_howto _______________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{article} +\documentclass[letterpaper,10pt,english]{sphinxhowto} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{0} + + + +\title{Sphinx Tests Documentation} +\date{Jul 07, 2026} +\release{} +\author{Georg Brandl} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\part{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\section{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\section{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\part{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\section{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\section{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +__________________ test_latex_toplevel_sectioning_is_chapter ___________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{1} + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\section{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\section{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\chapter{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\section{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\section{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +_____________ test_latex_toplevel_sectioning_is_chapter_with_howto _____________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{article} +\documentclass[letterpaper,10pt,english]{sphinxhowto} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{2} + + + +\title{Sphinx Tests Documentation} +\date{Jul 07, 2026} +\release{} +\author{Georg Brandl} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\section{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\subsection{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsubsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\subsection{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsubsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\section{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\subsection{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsubsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\subsection{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsubsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +WARNING: unknown 'chapter' toplevel_sectioning for class 'article' + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) +WARNING: unknown 'chapter' toplevel_sectioning for class 'article' + +__________________ test_latex_toplevel_sectioning_is_section ___________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} +\setcounter{tocdepth}{2} + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\section{Foo} +\label{\detokenize{foo:foo}}\label{\detokenize{foo::doc}} +\sphinxAtStartPar +should be 1 + + +\subsection{Foo A} +\label{\detokenize{foo:foo-a}} +\sphinxAtStartPar +should be 1.1 + + +\subsubsection{Foo A1} +\label{\detokenize{foo:foo-a1}} +\sphinxAtStartPar +should be 1.1.1 + + +\subsection{Foo B} +\label{\detokenize{foo:foo-b}} +\sphinxAtStartPar +should be 1.2 + + +\subsubsection{Foo B1} +\label{\detokenize{foo:foo-b1}} +\sphinxAtStartPar +should be 1.2.1 + +\sphinxstepscope + + +\section{Bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +should be 2 + + +\subsection{Bar A} +\label{\detokenize{bar:bar-a}} +\sphinxAtStartPar +should be 2.1 + +\sphinxstepscope + + +\subsubsection{Baz A} +\label{\detokenize{baz:baz-a}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +should be 2.1.1 + + +\subsection{Bar B} +\label{\detokenize{bar:bar-b}} +\sphinxAtStartPar +should be 2.2 + + +\subsubsection{Bar B1} +\label{\detokenize{bar:bar-b1}} +\sphinxAtStartPar +should be 2.2.1 + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth +# outdir: /tmp/pytest-of-root/pytest-0/toctree-maxdepth/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index foo bar baz +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: foo is already assigned section numbers (nested numbered toctree?) +/tmp/pytest-of-root/pytest-0/toctree-maxdepth/index.rst:4: WARNING: bar is already assigned section numbers (nested numbered toctree?) + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 4 added, 0 changed, 0 removed +reading sources... [ 25%] complex reading sources... [ 50%] index reading sources... [ 75%] longtable reading sources... [100%] tabular +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done +;49;00m +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done +;49;00m +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-table +# outdir: /tmp/pytest-of-root/pytest-0/latex-table/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done +;49;00m +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index tabular longtable complex +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/directives-raw +# outdir: /tmp/pytest-of-root/pytest-0/directives-raw/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/images +# outdir: /tmp/pytest-of-root/pytest-0/images/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] subdir/index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [ 25%] rimg.png copying images... [ 50%] img.pdf copying images... [ 75%] testimäge.png copying images... [100%] https://www.python.org/static/img/python-logo.png +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/images/subdir/index.rst: WARNING: document isn't included in any toctree +WARNING: Could not fetch remote image: https://www.google.com/NOT_EXIST.PNG [404] + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-index +# outdir: /tmp/pytest-of-root/pytest-0/latex-index/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-equations +# outdir: /tmp/pytest-of-root/pytest-0/latex-equations/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] equations +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... equations +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/image-in-parsed-literal +# outdir: /tmp/pytest-of-root/pytest-0/image-in-parsed-literal/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [100%] pic.png +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/nested-enumerated-list +# outdir: /tmp/pytest-of-root/pytest-0/nested-enumerated-list/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +__________________________ test_latex_thebibliography __________________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + + +\sphinxstepscope + + +\chapter{bar} +\label{\detokenize{bar:bar}}\label{\detokenize{bar::doc}} +\sphinxAtStartPar +Same footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in bar +% +\end{footnote} in bar.rst + +\sphinxstepscope + + +\chapter{baz} +\label{\detokenize{baz:baz}}\label{\detokenize{baz::doc}} +\sphinxAtStartPar +Auto footnote number % +\begin{footnote}[1]\sphinxAtStartFootnote +footnote in baz +% +\end{footnote} in baz.rst + +\begin{sphinxShadowBox} +\begin{itemize} +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id38}}{\hyperref[\detokenize{index:the-section-with-a-reference-to-authoryear}]{\sphinxcrossref{The section with a reference to \sphinxcite{index:authoryear}}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id39}}{\hyperref[\detokenize{index:the-section-with-a-reference-to}]{\sphinxcrossref{The section with a reference to }}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id40}}{\hyperref[\detokenize{index:the-section-with-an-object-description}]{\sphinxcrossref{The section with an object description}}} + +\item {} +\sphinxAtStartPar +\phantomsection\label{\detokenize{index:id41}}{\hyperref[\detokenize{index:footnotes-referred-twice}]{\sphinxcrossref{Footnotes referred twice}}} + +\end{itemize} +\end{sphinxShadowBox} + + +\chapter{The section with a reference to {[}AuthorYear{]}} +\label{\detokenize{index:the-section-with-a-reference-to-authoryear}} +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a reference to \sphinxcite{index:authoryear}.}\label{\detokenize{index:id33}}\end{figure} + + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{The table title with a reference to {[}AuthorYear{]}}\label{\detokenize{index:id34}} +\sphinxaftertopcaption +\begin{tabulary}{\linewidth}[t]{|T|T|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +Header1 +&\sphinxstyletheadfamily +\sphinxAtStartPar +Header2 +\\ +\hline +\sphinxAtStartPar +Content +& +\sphinxAtStartPar +Content +\\ +\hline +\end{tabulary} +\par +\sphinxattableend\end{savenotes} +\subsubsection*{The rubric title with a reference to {[}AuthorYear{]}} +\begin{itemize} +\item {} +\sphinxAtStartPar +First footnote: % +\begin{footnote}[2]\sphinxAtStartFootnote +First +% +\end{footnote} + +\item {} +\sphinxAtStartPar +Second footnote: % +\begin{footnote}[1]\sphinxAtStartFootnote +Second +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/}{Sphinx} + +\item {} +\sphinxAtStartPar +Third footnote: % +\begin{footnote}[3]\sphinxAtStartFootnote +Third \sphinxfootnotemark[4] +% +\end{footnote}% +\begin{footnotetext}[4]\sphinxAtStartFootnote +Footnote inside footnote +% +\end{footnotetext}\ignorespaces + +\item {} +\sphinxAtStartPar +Fourth footnote: % +\begin{footnote}[5]\sphinxAtStartFootnote +Fourth +% +\end{footnote} + +\item {} +\sphinxAtStartPar +\sphinxhref{http://sphinx-doc.org/~test/}{URL including tilde} + +\item {} +\sphinxAtStartPar +GitHub Page: \sphinxurl{https://github.com/sphinx-doc/sphinx} + +\item {} +\sphinxAtStartPar +Mailing list: \sphinxhref{mailto:sphinx-dev@googlegroups.com}{sphinx\sphinxhyphen{}dev@googlegroups.com} + +\end{itemize} + + +\chapter{The section with a reference to \sphinxfootnotemark[6]} +\label{\detokenize{index:the-section-with-a-reference-to}}% +\begin{footnotetext}[6]\sphinxAtStartFootnote +Footnote in section +% +\end{footnotetext}\ignorespaces \begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{URL in term}} +\sphinxAtStartPar +Description Description Description … + +\sphinxlineitem{Footnote in term \sphinxfootnotemark[7]}% +\begin{footnotetext}[7]\sphinxAtStartFootnote +Footnote in term +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +Description Description Description … +\begin{description} +\sphinxlineitem{\sphinxhref{http://sphinx-doc.org/}{Term in deflist}} +\sphinxAtStartPar +Description2 + +\end{description} + +\end{description} + +\begin{figure}[htbp] +\centering +\capstart + +\noindent\sphinxincludegraphics{{rimg}.png} +\caption{This is the figure caption with a footnote to \sphinxfootnotemark[8].}\label{\detokenize{index:id35}}\end{figure} +% +\begin{footnotetext}[8]\sphinxAtStartFootnote +Footnote in caption +% +\end{footnotetext}\ignorespaces + +\begin{savenotes}\sphinxattablestart +\centering +\sphinxcapstartof{table} +\sphinxthecaptionisattop +\sphinxcaption{footnote \sphinxfootnotemark[9] in caption of normal table}\label{\detokenize{index:id36}} +\sphinxaftertopcaption +\begin{tabular}[t]{|\X{1}{2}|\X{1}{2}|} +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline% +\begin{footnotetext}[9]\sphinxAtStartFootnote +Foot note in table +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{tabular} +\par +\sphinxattableend\end{savenotes} + + +\begin{savenotes}\sphinxatlongtablestart\begin{longtable}[c]{|\X{1}{2}|\X{1}{2}|} +\sphinxthelongtablecaptionisattop +\caption{footnote \sphinxfootnotemark[10] in caption \sphinxfootnotemark[11] of longtable\strut}\label{\detokenize{index:id37}}\\*[\sphinxlongtablecapskipadjust] +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endfirsthead + +\multicolumn{2}{c}% +{\makebox[0pt]{\sphinxtablecontinued{\tablename\ \thetable{} \textendash{} continued from previous page}}}\\ +\hline +\sphinxstyletheadfamily +\sphinxAtStartPar +name +&\sphinxstyletheadfamily +\sphinxAtStartPar +desc +\\ +\hline +\endhead + +\hline +\multicolumn{2}{r}{\makebox[0pt][r]{\sphinxtablecontinued{continues on next page}}}\\ +\endfoot + +\endlastfoot +% +\begin{footnotetext}[10]\sphinxAtStartFootnote +Foot note in longtable +% +\end{footnotetext}\ignorespaces % +\begin{footnotetext}[11]\sphinxAtStartFootnote +Second footnote in caption of longtable +\sphinxSetupCaptionForVerbatim{I am in a footnote} +\def\sphinxLiteralBlockLabel{\label{\detokenize{index:codeblockinfootnote}}} +\begin{sphinxVerbatimintable}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{foo}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatimintable} +% +\end{footnotetext}\ignorespaces +\sphinxAtStartPar +This is a reference to the code\sphinxhyphen{}block in the footnote: +{\hyperref[\detokenize{index:codeblockinfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am in a footnote}}}} +& +\sphinxAtStartPar +This is one more footnote with some code in it % +\begin{footnote}[12]\sphinxAtStartFootnote +Third footnote in longtable +\sphinxSetupCaptionForVerbatim{I am also in a footnote} +\sphinxSetupCodeBlockInFootnote +\begin{sphinxVerbatim}[commandchars=\\\{\}] +\PYG{k}{def} \PYG{n+nf}{bar}\PYG{p}{(}\PYG{n}{x}\PYG{p}{,}\PYG{n}{y}\PYG{p}{)}\PYG{p}{:} + \PYG{k}{return} \PYG{n}{x}\PYG{o}{+}\PYG{n}{y} +\end{sphinxVerbatim} +% +\end{footnote}. +\\ +\hline +\sphinxAtStartPar +This is a reference to the other code block: +{\hyperref[\detokenize{index:codeblockinanotherfootnote}]{\sphinxcrossref{\DUrole{std,std-ref}{I am also in a footnote}}}} +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\sphinxAtStartPar +a +& +\sphinxAtStartPar +b +\\ +\hline +\end{longtable}\sphinxatlongtableend\end{savenotes} + + +\chapter{The section with an object description} +\label{\detokenize{index:the-section-with-an-object-description}} + +\begin{fulllineitems} + +\pysigstartsignatures +\pysiglinewithargsret{\sphinxbfcode{\sphinxupquote{dummy}}}{\emph{\DUrole{n}{N}}}{} +\pysigstopsignatures +\end{fulllineitems} + + + +\chapter{Footnotes referred twice} +\label{\detokenize{index:footnotes-referred-twice}}\begin{itemize} +\item {} +\sphinxAtStartPar +Explicitly numbered footnote: % +\begin{footnote}[100]\sphinxAtStartFootnote +Numbered footnote +% +\end{footnote} \sphinxfootnotemark[100] + +\item {} +\sphinxAtStartPar +Named footnote: % +\begin{footnote}[13]\sphinxAtStartFootnote +Named footnote +% +\end{footnote} \sphinxfootnotemark[13] + +\end{itemize} + +\begin{sphinxthebibliography}{AuthorYe} +\bibitem[AuthorYear]{index:authoryear} +\sphinxAtStartPar +Author, Title, Year +\end{sphinxthebibliography} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/footnotes +# outdir: /tmp/pytest-of-root/pytest-0/footnotes/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: [config changed ('rst_prolog')] 3 added, 0 changed, 0 removed +reading sources... [ 33%] bar reading sources... [ 66%] baz reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index bar baz +resolving references... +done +writing... done +copying images... [100%] rimg.png +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/glossary +# outdir: /tmp/pytest-of-root/pytest-0/glossary/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-labels +# outdir: /tmp/pytest-of-root/pytest-0/latex-labels/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] otherdoc +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index otherdoc +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +/tmp/pytest-of-root/pytest-0/latex-labels/index.rst:12: WARNING: image file not readable: logo.jpg +/tmp/pytest-of-root/pytest-0/latex-labels/index.rst:: WARNING: image file not readable: logo.jpg + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-figure-in-admonition +# outdir: /tmp/pytest-of-root/pytest-0/latex-figure-in-admonition/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying images... [100%] img.png +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/index_on_title +# outdir: /tmp/pytest-of-root/pytest-0/index_on_title/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] contents +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... contents +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: +WARNING: Since v2.0, Sphinx uses "index" as root_doc by default. Please add "root_doc = 'contents'" to your conf.py. + +_______________ test_texescape_for_non_unicode_supported_engine ________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} + +\PassOptionsToPackage{warn}{textcomp} +\usepackage[utf8]{inputenc} +\ifdefined\DeclareUnicodeCharacter +% support both utf8 and utf8x syntaxes + \ifdefined\DeclareUnicodeCharacterAsOptional + \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}} + \else + \let\sphinxDUC\DeclareUnicodeCharacter + \fi + \sphinxDUC{00A0}{\nobreakspace} + \sphinxDUC{2500}{\sphinxunichar{2500}} + \sphinxDUC{2502}{\sphinxunichar{2502}} + \sphinxDUC{2514}{\sphinxunichar{2514}} + \sphinxDUC{251C}{\sphinxunichar{251C}} + \sphinxDUC{2572}{\textbackslash} +\fi +\usepackage{cmap} +\usepackage[T1]{fontenc} +\usepackage{amsmath,amssymb,amstext} +\usepackage{babel} + + + +\usepackage{tgtermes} +\usepackage{tgheros} +\renewcommand{\ttdefault}{txtt} + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=auto} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\ifdefined\shorthandoff + \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi + \ifnum\catcode`\"=\active\shorthandoff{"}\fi +\fi + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + +\begin{itemize} +\item {} +\sphinxAtStartPar +script small e: e + +\item {} +\sphinxAtStartPar +double struck italic small i: i + +\item {} +\sphinxAtStartPar +superscript: \(\sp{\text{0}}\), \(\sp{\text{1}}\) + +\item {} +\sphinxAtStartPar +subscript: \(\sb{\text{0}}\), \(\sb{\text{1}}\) + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-unicode +# outdir: /tmp/pytest-of-root/pytest-0/latex-unicode/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +_________________ test_texescape_for_unicode_supported_engine __________________ +----------------------------- Captured stdout call ----------------------------- +%% Generated by Sphinx. +\def\sphinxdocclass{report} +\documentclass[letterpaper,10pt,english]{sphinxmanual} +\ifdefined\pdfpxdimen + \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen +\fi \sphinxpxdimen=.75bp\relax +\ifdefined\pdfimageresolution + \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax +\fi +%% let collapsible pdf bookmarks panel have high depth per default +\PassOptionsToPackage{bookmarksdepth=5}{hyperref} +%% turn off hyperref patch of \index as sphinx.xdy xindy module takes care of +%% suitable \hyperpage mark-up, working around hyperref-xindy incompatibility +\PassOptionsToPackage{hyperindex=false}{hyperref} +%% memoir class requires extra handling +\makeatletter\@ifclassloaded{memoir} +{\ifdefined\memhyperindexfalse\memhyperindexfalse\fi}{}\makeatother + +\PassOptionsToPackage{warn}{textcomp} + +\catcode`^^^^00a0\active\protected\def^^^^00a0{\leavevmode\nobreak\ } +\usepackage{cmap} +\usepackage{fontspec} +\defaultfontfeatures[\rmfamily,\sffamily,\ttfamily]{} +\usepackage{amsmath,amssymb,amstext} +\usepackage{polyglossia} +\setmainlanguage{english} + + + +\setmainfont{FreeSerif}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Italic, + BoldFont = *Bold, + BoldItalicFont = *BoldItalic +] +\setsansfont{FreeSans}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] +\setmonofont{FreeMono}[ + Extension = .otf, + UprightFont = *, + ItalicFont = *Oblique, + BoldFont = *Bold, + BoldItalicFont = *BoldOblique, +] + + + +\usepackage[Bjarne]{fncychap} +\usepackage{sphinx} + +\fvset{fontsize=\small} +\usepackage{geometry} + + +% Include hyperref last. +\usepackage{hyperref} +% Fix anchor placement for figures with captions. +\usepackage{hypcap}% it must be loaded after hyperref. +% Set up styles of URL: it should be placed after hyperref. +\urlstyle{same} + + +\usepackage{sphinxmessages} + + + + +\title{Python} +\date{Jul 07, 2026} +\release{} +\author{unknown} +\newcommand{\sphinxlogo}{\vbox{}} +\renewcommand{\releasename}{} +\makeindex +\begin{document} + +\pagestyle{empty} +\sphinxmaketitle +\pagestyle{plain} +\sphinxtableofcontents +\pagestyle{normal} +\phantomsection\label{\detokenize{index::doc}} + +\begin{itemize} +\item {} +\sphinxAtStartPar +script small e: e + +\item {} +\sphinxAtStartPar +double struck italic small i: i + +\item {} +\sphinxAtStartPar +superscript: ⁰, ¹ + +\item {} +\sphinxAtStartPar +subscript: ₀, ₁ + +\end{itemize} + + + +\renewcommand{\indexname}{Index} +\printindex +\end{document} +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-unicode +# outdir: /tmp/pytest-of-root/pytest-0/latex-unicode/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/basic +# outdir: /tmp/pytest-of-root/pytest-0/basic/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +loading pickled environment... done +building [latex]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +processing test.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/nested-tables +# outdir: /tmp/pytest-of-root/pytest-0/nested-tables/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/latex-container +# outdir: /tmp/pytest-of-root/pytest-0/latex-container/_build/latex +# status: +Running Sphinx v5.0.0+/de6b5a643 +building [latex]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +processing python.tex... index +resolving references... +done +writing... done +copying TeX support files... copying TeX support files... +done + +# warning: + +============================= slowest 25 durations ============================= +0.63s call tests/test_build_latex.py::test_latex_thebibliography +0.52s call tests/test_build_latex.py::test_writer +0.39s call tests/test_build_latex.py::test_footnote +0.31s call tests/test_build_latex.py::test_latex_table_complex_tables +0.29s setup tests/test_build_latex.py::test_writer +0.28s call tests/test_build_latex.py::test_numref_with_prefix1 +0.25s call tests/test_build_latex.py::test_latex_table_custom_template_caseC +0.24s call tests/test_build_latex.py::test_latex_table_tabulars +0.23s call tests/test_build_latex.py::test_toctree_with_deeper_maxdepth +0.22s call tests/test_build_latex.py::test_latex_table_custom_template_caseA +0.21s call tests/test_build_latex.py::test_latex_images +0.21s call tests/test_build_latex.py::test_polyglossia_with_language_de +0.20s call tests/test_build_latex.py::test_polyglossia_with_language_de_1901 +0.19s call tests/test_build_latex.py::test_latex_show_urls_is_footnote +0.18s call tests/test_build_latex.py::test_latex_show_urls_footnote_and_substitutions +0.18s call tests/test_build_latex.py::test_latex_additional_settings_for_language_code +0.18s call tests/test_build_latex.py::test_latex_toplevel_sectioning_is_None +0.17s call tests/test_build_latex.py::test_latex_table_custom_template_caseB +0.14s call tests/test_build_latex.py::test_numref_with_language_ja +0.13s call tests/test_build_latex.py::test_toctree_maxdepth_manual +0.13s call tests/test_build_latex.py::test_babel_with_unknown_language +0.12s call tests/test_build_latex.py::test_toctree_without_maxdepth +0.12s call tests/test_build_latex.py::test_latex_show_urls_is_inline +0.10s call tests/test_build_latex.py::test_latex_toplevel_sectioning_is_chapter +0.09s call tests/test_build_latex.py::test_latex_show_urls_is_no +=========================== short test summary info ============================ +PASSED tests/test_build_latex.py::test_writer +PASSED tests/test_build_latex.py::test_latex_warnings +PASSED tests/test_build_latex.py::test_latex_basic +PASSED tests/test_build_latex.py::test_latex_basic_manual +PASSED tests/test_build_latex.py::test_latex_basic_howto +PASSED tests/test_build_latex.py::test_latex_basic_manual_ja +PASSED tests/test_build_latex.py::test_latex_basic_howto_ja +PASSED tests/test_build_latex.py::test_latex_theme +PASSED tests/test_build_latex.py::test_latex_theme_papersize +PASSED tests/test_build_latex.py::test_latex_theme_options +PASSED tests/test_build_latex.py::test_latex_additional_settings_for_language_code +PASSED tests/test_build_latex.py::test_latex_additional_settings_for_greek +PASSED tests/test_build_latex.py::test_latex_title_after_admonitions +PASSED tests/test_build_latex.py::test_latex_release +PASSED tests/test_build_latex.py::test_numref +PASSED tests/test_build_latex.py::test_numref_with_prefix1 +PASSED tests/test_build_latex.py::test_numref_with_prefix2 +PASSED tests/test_build_latex.py::test_numref_with_language_ja +PASSED tests/test_build_latex.py::test_latex_obey_numfig_is_false +PASSED tests/test_build_latex.py::test_latex_obey_numfig_secnum_depth_is_zero +PASSED tests/test_build_latex.py::test_latex_obey_numfig_secnum_depth_is_two +PASSED tests/test_build_latex.py::test_latex_obey_numfig_but_math_numfig_false +PASSED tests/test_build_latex.py::test_latex_add_latex_package +PASSED tests/test_build_latex.py::test_babel_with_no_language_settings +PASSED tests/test_build_latex.py::test_babel_with_language_de +PASSED tests/test_build_latex.py::test_babel_with_language_ru +PASSED tests/test_build_latex.py::test_babel_with_language_tr +PASSED tests/test_build_latex.py::test_babel_with_language_ja +PASSED tests/test_build_latex.py::test_babel_with_unknown_language +PASSED tests/test_build_latex.py::test_polyglossia_with_language_de +PASSED tests/test_build_latex.py::test_polyglossia_with_language_de_1901 +PASSED tests/test_build_latex.py::test_footnote +PASSED tests/test_build_latex.py::test_reference_in_caption_and_codeblock_in_footnote +PASSED tests/test_build_latex.py::test_footnote_referred_multiple_times +PASSED tests/test_build_latex.py::test_latex_show_urls_is_inline +PASSED tests/test_build_latex.py::test_latex_show_urls_is_footnote +PASSED tests/test_build_latex.py::test_latex_show_urls_is_no +PASSED tests/test_build_latex.py::test_latex_show_urls_footnote_and_substitutions +PASSED tests/test_build_latex.py::test_image_in_section +PASSED tests/test_build_latex.py::test_latex_logo_if_not_found +PASSED tests/test_build_latex.py::test_toctree_maxdepth_manual +PASSED tests/test_build_latex.py::test_toctree_maxdepth_howto +PASSED tests/test_build_latex.py::test_toctree_not_found +PASSED tests/test_build_latex.py::test_toctree_without_maxdepth +PASSED tests/test_build_latex.py::test_toctree_with_deeper_maxdepth +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_None +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_part +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_part_with_howto +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_chapter +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_chapter_with_howto +PASSED tests/test_build_latex.py::test_latex_toplevel_sectioning_is_section +PASSED tests/test_build_latex.py::test_latex_table_tabulars +PASSED tests/test_build_latex.py::test_latex_table_longtable +PASSED tests/test_build_latex.py::test_latex_table_complex_tables +PASSED tests/test_build_latex.py::test_latex_table_custom_template_caseA +PASSED tests/test_build_latex.py::test_latex_table_custom_template_caseB +PASSED tests/test_build_latex.py::test_latex_table_custom_template_caseC +PASSED tests/test_build_latex.py::test_latex_raw_directive +PASSED tests/test_build_latex.py::test_latex_images +PASSED tests/test_build_latex.py::test_latex_index +PASSED tests/test_build_latex.py::test_latex_equations +PASSED tests/test_build_latex.py::test_latex_image_in_parsed_literal +PASSED tests/test_build_latex.py::test_latex_nested_enumerated_list +PASSED tests/test_build_latex.py::test_latex_thebibliography +PASSED tests/test_build_latex.py::test_latex_glossary +PASSED tests/test_build_latex.py::test_latex_labels +PASSED tests/test_build_latex.py::test_latex_figure_in_admonition +PASSED tests/test_build_latex.py::test_default_latex_documents +PASSED tests/test_build_latex.py::test_index_on_title +PASSED tests/test_build_latex.py::test_texescape_for_non_unicode_supported_engine +PASSED tests/test_build_latex.py::test_texescape_for_unicode_supported_engine +PASSED tests/test_build_latex.py::test_latex_elements_extrapackages +PASSED tests/test_build_latex.py::test_latex_nested_tables +PASSED tests/test_build_latex.py::test_latex_container +SKIPPED [6] tests/test_build_latex.py:83: not running latex, the required styles do not seem to be installed +SKIPPED [1] tests/test_build_latex.py:1153: not running latex, the required styles do not seem to be installed +SKIPPED [1] tests/test_build_latex.py:1539: not running latex, the required styles do not seem to be installed +FAILED tests/test_build_latex.py::test_latex_code_role - AssertionError: assert ((('Inline \\sphinxcode{\\sphinxupquote{%' + '\n') +... +============= 1 failed, 74 passed, 8 skipped, 2 warnings in 8.61s ============== +py39: exit 1 (9.01 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_build_latex.py pid=109 + py39: FAIL code 1 (9.02=setup[0.01]+cmd[9.01] seconds) + evaluation failed :( (9.07 seconds) ++ : '>>>>> End Test Output' ++ git checkout f1061c012e214f16fd8790dec3c283d787e3daa8 tests/test_build_latex.py +Updated 1 path from 5f90f2f52 diff --git a/verify_logs/sphinx-doc__sphinx-10449_log.txt b/verify_logs/sphinx-doc__sphinx-10449_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..a1802e8befe3ef1e985a863fab1fe96fd176a1fa --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10449_log.txt @@ -0,0 +1,938 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/ext/autodoc/typehints.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit fcb78c025df1c9e201466d168584b629d0c3e093 +Author: SWE-bench +Date: Wed Sep 10 15:58:46 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ git -c core.fileMode=false diff 36367765fe780f962bba861bf368a765380bbc68 +diff --git a/sphinx/ext/autodoc/typehints.py b/sphinx/ext/autodoc/typehints.py +index 06768168e..50fc8b4b3 100644 +--- a/sphinx/ext/autodoc/typehints.py ++++ b/sphinx/ext/autodoc/typehints.py +@@ -28,7 +28,11 @@ def record_typehints(app: Sphinx, objtype: str, name: str, obj: Any, + for param in sig.parameters.values(): + if param.annotation is not param.empty: + annotation[param.name] = typing.stringify(param.annotation, mode) +- if sig.return_annotation is not sig.empty: ++ # Don't record the return type for classes or __init__ methods ++ # because __init__ always returns None ++ if (objtype != "class" and ++ (not name or not name.endswith(".__init__")) and ++ sig.return_annotation is not sig.empty): + annotation['return'] = typing.stringify(sig.return_annotation, mode) + except (TypeError, ValueError): + pass +@@ -59,10 +63,14 @@ def merge_typehints(app: Sphinx, domain: str, objtype: str, contentnode: Element + + for field_list in field_lists: + if app.config.autodoc_typehints_description_target == "all": +- modify_field_list(field_list, annotations[fullname]) ++ if objtype == "class": ++ # Don't add return type for classes ++ modify_field_list(field_list, annotations[fullname], skip_return=True) ++ else: ++ modify_field_list(field_list, annotations[fullname]) + elif app.config.autodoc_typehints_description_target == "documented_params": + augment_descriptions_with_types( +- field_list, annotations[fullname], force_rtype=True ++ field_list, annotations[fullname], force_rtype=False if objtype == "class" else True + ) + else: + augment_descriptions_with_types( +@@ -83,7 +91,7 @@ def insert_field_list(node: Element) -> nodes.field_list: + return field_list + + +-def modify_field_list(node: nodes.field_list, annotations: Dict[str, str]) -> None: ++def modify_field_list(node: nodes.field_list, annotations: Dict[str, str], skip_return: bool = False) -> None: + arguments: Dict[str, Dict[str, bool]] = {} + fields = cast(Iterable[nodes.field], node) + for field in fields: +@@ -123,7 +131,7 @@ def modify_field_list(node: nodes.field_list, annotations: Dict[str, str]) -> No + field += nodes.field_body('', nodes.paragraph('', '')) + node += field + +- if 'return' in annotations and 'return' not in arguments: ++ if 'return' in annotations and 'return' not in arguments and not skip_return: + field = nodes.field() + field += nodes.field_name('', 'rtype') + field += nodes.field_body('', nodes.paragraph('', annotation)) +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.0.0) +Requirement already satisfied: Jinja2>=2.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (3.1.4) +Requirement already satisfied: Pygments>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.18.0) +Requirement already satisfied: docutils<0.19,>=0.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (0.18.1) +Requirement already satisfied: snowballstemmer>=1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.2.0) +Requirement already satisfied: babel>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (0.7.16) +Requirement already satisfied: imagesize in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (2.32.3) +Requirement already satisfied: packaging in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (24.1) +Requirement already satisfied: importlib-metadata>=4.4 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.1.0.dev20260707) (3.0.11) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.4->Sphinx==5.1.0.dev20260707) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=2.3->Sphinx==5.1.0.dev20260707) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.1.0.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.1.0.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.1.0.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.1.0.dev20260707) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.1.0.dev20260707) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.1.0.dev20260707) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.1.0.dev20260707) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.1.0.dev20260707) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.1.0.dev20260707) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.1.0.dev20260707) (0.5.1) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 5.1.0.dev20250910 + Uninstalling Sphinx-5.1.0.dev20250910: + Successfully uninstalled Sphinx-5.1.0.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==5.1.0.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout 36367765fe780f962bba861bf368a765380bbc68 tests/test_ext_autodoc_configs.py +Updated 0 paths from b1e49e693 ++ git apply -v - +Checking patch tests/test_ext_autodoc_configs.py... +Applied patch tests/test_ext_autodoc_configs.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_ext_autodoc_configs.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_ext_autodoc_configs.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-5.1.0+/fcb78c025, docutils-0.18.1 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +collected 31 items + +tests/test_ext_autodoc_configs.py ..................F............ [100%] + +=================================== FAILURES =================================== +___________ test_autodoc_typehints_description_with_documented_init ____________ + +app = + + @pytest.mark.sphinx('text', testroot='ext-autodoc', + confoverrides={'autodoc_typehints': "description"}) + def test_autodoc_typehints_description_with_documented_init(app): + (app.srcdir / 'index.rst').write_text( + '.. autoclass:: target.typehints._ClassWithDocumentedInit\n' + ' :special-members: __init__\n', + encoding='utf8' + ) + app.build() + context = (app.outdir / 'index.txt').read_text(encoding='utf8') +> assert ('class target.typehints._ClassWithDocumentedInit(x)\n' + '\n' + ' Class docstring.\n' + '\n' + ' Parameters:\n' + ' **x** (*int*) --\n' + '\n' + ' __init__(x)\n' + '\n' + ' Init docstring.\n' + '\n' + ' Parameters:\n' + ' **x** (*int*) -- Some integer\n' + '\n' + ' Return type:\n' + ' None\n' == context) +E AssertionError: assert 'class target... None\n' == 'class target...ome integer\n' +E  +E Skipping 197 identical leading characters in diff, use -v to show +E me integer +E +  +E + Return type: +E + None + +tests/test_ext_autodoc_configs.py:1037: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints_description_target')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints_description_target')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints_description_target')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints_description_target')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints_description_target')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [config changed ('autodoc_typehints')] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +build succeeded. + +The text files are in ../tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text. + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: text +# srcdir: /tmp/pytest-of-root/pytest-0/autodoc_typehints_description_and_type_aliases +# outdir: /tmp/pytest-of-root/pytest-0/autodoc_typehints_description_and_type_aliases/_build/text +# status: +Running Sphinx v5.1.0+/fcb78c025 +building [mo]: targets for 0 po files that are out of date +building [text]: targets for 1 source files that are out of date +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] autodoc_type_aliases reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 50%] autodoc_type_aliases writing output... [100%] index +build succeeded, 4 warnings. + +The text files are in ../tmp/pytest-of-root/pytest-0/autodoc_typehints_description_and_type_aliases/_build/text. + +# warning: +/tmp/pytest-of-root/pytest-0/autodoc_typehints_description_and_type_aliases/autodoc_type_aliases.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/ext-autodoc/target/autodoc_type_aliases.py:docstring of target.autodoc_type_aliases.sum:: WARNING: py:class reference target not found: myint +/tmp/pytest-of-root/pytest-0/ext-autodoc/target/autodoc_type_aliases.py:docstring of target.autodoc_type_aliases.sum:: WARNING: py:class reference target not found: myint +/tmp/pytest-of-root/pytest-0/ext-autodoc/target/autodoc_type_aliases.py:docstring of target.autodoc_type_aliases.sum:: WARNING: py:class reference target not found: myint + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-autodoc +# outdir: /tmp/pytest-of-root/pytest-0/ext-autodoc/_build/html +# status: +Running Sphinx v5.1.0+/fcb78c025 +loading pickled environment... done + +# warning: + +============================= slowest 25 durations ============================= +0.27s setup tests/test_ext_autodoc_configs.py::test_autoclass_content_class +0.08s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_none +0.08s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_signature +0.08s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_and_type_aliases +0.07s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified +0.06s call tests/test_ext_autodoc_configs.py::test_autodoc_default_options +0.05s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description +0.05s call tests/test_ext_autodoc_configs.py::test_autodoc_default_options_with_values +0.04s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_none +0.03s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_both +0.03s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_no_undoc_doc_rtype +0.02s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_no_undoc +0.02s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init +0.02s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init_no_undoc_doc_rtype +0.01s call tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init_no_undoc +0.01s call tests/test_ext_autodoc_configs.py::test_autodoc_type_aliases +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_signature +0.01s call tests/test_ext_autodoc_configs.py::test_autoclass_content_class +0.01s setup tests/test_ext_autodoc_configs.py::test_autoclass_content_and_docstring_signature_init +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified_for_generic_alias +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_none_for_overload +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_and_type_aliases +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_default_options +0.01s setup tests/test_ext_autodoc_configs.py::test_autoclass_content_init +0.01s setup tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified_for_class_alias +=========================== short test summary info ============================ +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_class +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_init +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_class_signature_mixed +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_class_signature_separated_init +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_class_signature_separated_new +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_both +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_inherit_docstrings +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_docstring_signature +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_and_docstring_signature_class +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_and_docstring_signature_init +PASSED tests/test_ext_autodoc_configs.py::test_autoclass_content_and_docstring_signature_both +PASSED tests/test_ext_autodoc_configs.py::test_mocked_module_imports +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_signature +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_none +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_none_for_overload +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_no_undoc +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_no_undoc_doc_rtype +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init_no_undoc +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init_no_undoc_doc_rtype +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_for_invalid_node +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_both +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_type_aliases +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_and_type_aliases +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified_for_class_alias +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified_for_generic_alias +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_format_fully_qualified_for_newtype_alias +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_default_options +PASSED tests/test_ext_autodoc_configs.py::test_autodoc_default_options_with_values +FAILED tests/test_ext_autodoc_configs.py::test_autodoc_typehints_description_with_documented_init - AssertionError: assert 'class target... None\n' == 'class target...om... +========================= 1 failed, 30 passed in 1.50s ========================= +py39: exit 1 (1.91 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_ext_autodoc_configs.py pid=109 + py39: FAIL code 1 (1.91=setup[0.01]+cmd[1.91] seconds) + evaluation failed :( (1.98 seconds) ++ : '>>>>> End Test Output' ++ git checkout 36367765fe780f962bba861bf368a765380bbc68 tests/test_ext_autodoc_configs.py +Updated 1 path from b1e49e693 diff --git a/verify_logs/sphinx-doc__sphinx-10466_log.txt b/verify_logs/sphinx-doc__sphinx-10466_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8ef88a8bb0d8e396f66319334ff79fecd6a6d37 --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10466_log.txt @@ -0,0 +1,578 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/builders/gettext.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 12ba3395f04d089fe2cbabd2697df3a1655ac788 +Author: SWE-bench +Date: Wed Sep 10 16:00:30 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ git -c core.fileMode=false diff cab2d93076d0cca7c53fac885f927dde3e2a5fec +diff --git a/sphinx/builders/gettext.py b/sphinx/builders/gettext.py +index e8bc547b7..1e14d6fc0 100644 +--- a/sphinx/builders/gettext.py ++++ b/sphinx/builders/gettext.py +@@ -32,7 +32,8 @@ class Message: + """An entry of translatable message.""" + def __init__(self, text: str, locations: List[Tuple[str, int]], uuids: List[str]): + self.text = text +- self.locations = locations ++ # remove duplicates while retaining order ++ self.locations = list(dict.fromkeys(locations)) + self.uuids = uuids + + +diff --git a/tox.ini b/tox.ini +index 105a02597..90ada0821 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -29,7 +29,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.0.0) +Requirement already satisfied: Jinja2>=2.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (3.1.4) +Requirement already satisfied: Pygments>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.18.0) +Requirement already satisfied: docutils<0.19,>=0.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (0.18.1) +Requirement already satisfied: snowballstemmer>=1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.2.0) +Requirement already satisfied: babel>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (0.7.16) +Requirement already satisfied: imagesize in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (2.32.3) +Requirement already satisfied: packaging in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (24.1) +Requirement already satisfied: importlib-metadata>=4.4 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.0.0b1.dev20260707) (3.0.11) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.4->Sphinx==5.0.0b1.dev20260707) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=2.3->Sphinx==5.0.0b1.dev20260707) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0b1.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0b1.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0b1.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.0.0b1.dev20260707) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0b1.dev20260707) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0b1.dev20260707) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0b1.dev20260707) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==5.0.0b1.dev20260707) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0b1.dev20260707) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.0.0b1.dev20260707) (0.5.1) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 5.0.0b1.dev20250910 + Uninstalling Sphinx-5.0.0b1.dev20250910: + Successfully uninstalled Sphinx-5.0.0b1.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==5.0.0b1.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout cab2d93076d0cca7c53fac885f927dde3e2a5fec tests/test_build_gettext.py +Updated 0 paths from 04de92458 ++ git apply -v - +Checking patch tests/test_build_gettext.py... +Applied patch tests/test_build_gettext.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_build_gettext.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_build_gettext.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-5.0.0b1, docutils-0.18.1 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +collected 8 items + +tests/test_build_gettext.py ..s..... [100%] + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/root-gettext +# outdir: /tmp/pytest-of-root/pytest-0/root-gettext/_build/gettext +# status: +Running Sphinx v5.0.0b1 +building [gettext]: targets for 3 template files +reading templates... [ 33%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/contentssb.html reading templates... [ 66%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/customsb.html reading templates... [100%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/layout.html +building [gettext]: all source files +updating environment: [new config] 15 added, 0 changed, 0 removed +reading sources... [ 6%] autodoc reading sources... [ 13%] bom reading sources... [ 20%] extapi reading sources... [ 26%] extensions reading sources... [ 33%] footnote reading sources... [ 40%] images reading sources... [ 46%] includes reading sources... [ 53%] index reading sources... [ 60%] lists reading sources... [ 66%] markup reading sources... [ 73%] math reading sources... [ 80%] objects reading sources... [ 86%] otherext reading sources... [ 93%] subdir/images reading sources... [100%] subdir/includes +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 6%] autodoc writing output... [ 13%] bom writing output... [ 20%] extapi writing output... [ 26%] extensions writing output... [ 33%] footnote writing output... [ 40%] images writing output... [ 46%] includes writing output... [ 53%] index writing output... [ 60%] lists writing output... [ 66%] markup writing output... [ 73%] math writing output... [ 80%] objects writing output... [ 86%] otherext writing output... [ 93%] subdir/images writing output... [100%] subdir/includes +writing message catalogs... [ 7%] autodoc writing message catalogs... [ 14%] bom writing message catalogs... [ 21%] extapi writing message catalogs... [ 28%] extensions writing message catalogs... [ 35%] footnote writing message catalogs... [ 42%] images writing message catalogs... [ 50%] includes writing message catalogs... [ 57%] index writing message catalogs... [ 64%] lists writing message catalogs... [ 71%] markup writing message catalogs... [ 78%] math writing message catalogs... [ 85%] objects writing message catalogs... [ 92%] otherext writing message catalogs... [100%] subdir + +# warning: +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class:1: WARNING: duplicate object description of autodoc_target.Class, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.attr:1: WARNING: duplicate object description of autodoc_target.Class.attr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.descr:1: WARNING: duplicate object description of autodoc_target.Class.descr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.docattr:1: WARNING: duplicate object description of autodoc_target.Class.docattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.excludemeth:1: WARNING: duplicate object description of autodoc_target.Class.excludemeth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_comment:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_comment, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_inline:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_inline, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.inst_attr_string:1: WARNING: duplicate object description of autodoc_target.Class.inst_attr_string, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.mdocattr:1: WARNING: duplicate object description of autodoc_target.Class.mdocattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.meth:1: WARNING: duplicate object description of autodoc_target.Class.meth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.moore:1: WARNING: duplicate object description of autodoc_target.Class.moore, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.prop:1: WARNING: duplicate object description of autodoc_target.Class.prop, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.skipmeth:1: WARNING: duplicate object description of autodoc_target.Class.skipmeth, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.udocattr:1: WARNING: duplicate object description of autodoc_target.Class.udocattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.Class.docattr:1: WARNING: duplicate object description of autodoc_target.Class.docattr, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.InstAttCls:1: WARNING: duplicate object description of autodoc_target.InstAttCls, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.InstAttCls.ca1:1: WARNING: duplicate object description of autodoc_target.InstAttCls.ca1, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/autodoc_target.py:docstring of autodoc_target.InstAttCls.ia1:1: WARNING: duplicate object description of autodoc_target.InstAttCls.ia1, other instance in autodoc, use :noindex: for one of them +/tmp/pytest-of-root/pytest-0/root-gettext/objects.txt:143: WARNING: Unparseable C cross-reference: 'SphinxType *' +Invalid C declaration: Expected end of definition. [error at 11] + SphinxType * + -----------^ + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/gettext +# outdir: /tmp/pytest-of-root/pytest-0/gettext/_build/gettext +# status: +Running Sphinx v5.0.0b1 +building [gettext]: targets for 1 template files +reading templates... [100%] /tmp/pytest-of-root/pytest-0/gettext/_templates/contents.html +updating environment: [new config] 29 added, 0 changed, 0 removed +reading sources... [ 3%] admonitions reading sources... [ 6%] bom reading sources... [ 10%] definition_terms reading sources... [ 13%] docfields reading sources... [ 17%] external_links reading sources... [ 20%] figure reading sources... [ 24%] footnote reading sources... [ 27%] glossary_terms reading sources... [ 31%] glossary_terms_inconsistency reading sources... [ 34%] index reading sources... [ 37%] index_entries reading sources... [ 41%] label_target reading sources... [ 44%] literalblock reading sources... [ 48%] noqa reading sources... [ 51%] only reading sources... [ 55%] raw reading sources... [ 58%] refs reading sources... [ 62%] refs_inconsistency reading sources... [ 65%] refs_python_domain reading sources... [ 68%] role_xref reading sources... [ 72%] rubric reading sources... [ 75%] section reading sources... [ 79%] seealso reading sources... [ 82%] subdir/index reading sources... [ 86%] table reading sources... [ 89%] toctree reading sources... [ 93%] topic reading sources... [ 96%] versionchange reading sources... [100%] warnings +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 3%] admonitions writing output... [ 6%] bom writing output... [ 10%] definition_terms writing output... [ 13%] docfields writing output... [ 17%] external_links writing output... [ 20%] figure writing output... [ 24%] footnote writing output... [ 27%] glossary_terms writing output... [ 31%] glossary_terms_inconsistency writing output... [ 34%] index writing output... [ 37%] index_entries writing output... [ 41%] label_target writing output... [ 44%] literalblock writing output... [ 48%] noqa writing output... [ 51%] only writing output... [ 55%] raw writing output... [ 58%] refs writing output... [ 62%] refs_inconsistency writing output... [ 65%] refs_python_domain writing output... [ 68%] role_xref writing output... [ 72%] rubric writing output... [ 75%] section writing output... [ 79%] seealso writing output... [ 82%] subdir/index writing output... [ 86%] table writing output... [ 89%] toctree writing output... [ 93%] topic writing output... [ 96%] versionchange writing output... [100%] warnings +writing message catalogs... [ 3%] sphinx writing message catalogs... [ 6%] admonitions writing message catalogs... [ 10%] bom writing message catalogs... [ 13%] definition_terms writing message catalogs... [ 16%] docfields writing message catalogs... [ 20%] external_links writing message catalogs... [ 23%] figure writing message catalogs... [ 26%] footnote writing message catalogs... [ 30%] glossary_terms writing message catalogs... [ 33%] glossary_terms_inconsistency writing message catalogs... [ 36%] index writing message catalogs... [ 40%] index_entries writing message catalogs... [ 43%] label_target writing message catalogs... [ 46%] literalblock writing message catalogs... [ 50%] noqa writing message catalogs... [ 53%] only writing message catalogs... [ 56%] raw writing message catalogs... [ 60%] refs writing message catalogs... [ 63%] refs_inconsistency writing message catalogs... [ 66%] refs_python_domain writing message catalogs... [ 70%] role_xref writing message catalogs... [ 73%] rubric writing message catalogs... [ 76%] section writing message catalogs... [ 80%] seealso writing message catalogs... [ 83%] subdir/index writing message catalogs... [ 86%] table writing message catalogs... [ 90%] toctree writing message catalogs... [ 93%] topic writing message catalogs... [ 96%] versionchange writing message catalogs... [100%] warnings + +# warning: +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt:41: ERROR: Duplicate target name, cannot be used as a unique reference: "duplicated sub section". +/tmp/pytest-of-root/pytest-0/gettext/literalblock.txt:13: WARNING: Literal block expected; none found. +/tmp/pytest-of-root/pytest-0/gettext/admonitions.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/noqa.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/refs_python_domain.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/rubric.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/toctree.txt: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/gettext +# outdir: /tmp/pytest-of-root/pytest-0/gettext/_build/gettext +# status: +Running Sphinx v5.0.0b1 +loading pickled environment... done +building [gettext]: targets for 1 template files +reading templates... [100%] /tmp/pytest-of-root/pytest-0/gettext/_templates/contents.html +updating environment: [config changed ('gettext_additional_targets')] 29 added, 0 changed, 0 removed +reading sources... [ 3%] admonitions reading sources... [ 6%] bom reading sources... [ 10%] definition_terms reading sources... [ 13%] docfields reading sources... [ 17%] external_links reading sources... [ 20%] figure reading sources... [ 24%] footnote reading sources... [ 27%] glossary_terms reading sources... [ 31%] glossary_terms_inconsistency reading sources... [ 34%] index reading sources... [ 37%] index_entries reading sources... [ 41%] label_target reading sources... [ 44%] literalblock reading sources... [ 48%] noqa reading sources... [ 51%] only reading sources... [ 55%] raw reading sources... [ 58%] refs reading sources... [ 62%] refs_inconsistency reading sources... [ 65%] refs_python_domain reading sources... [ 68%] role_xref reading sources... [ 72%] rubric reading sources... [ 75%] section reading sources... [ 79%] seealso reading sources... [ 82%] subdir/index reading sources... [ 86%] table reading sources... [ 89%] toctree reading sources... [ 93%] topic reading sources... [ 96%] versionchange reading sources... [100%] warnings +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 3%] admonitions writing output... [ 6%] bom writing output... [ 10%] definition_terms writing output... [ 13%] docfields writing output... [ 17%] external_links writing output... [ 20%] figure writing output... [ 24%] footnote writing output... [ 27%] glossary_terms writing output... [ 31%] glossary_terms_inconsistency writing output... [ 34%] index writing output... [ 37%] index_entries writing output... [ 41%] label_target writing output... [ 44%] literalblock writing output... [ 48%] noqa writing output... [ 51%] only writing output... [ 55%] raw writing output... [ 58%] refs writing output... [ 62%] refs_inconsistency writing output... [ 65%] refs_python_domain writing output... [ 68%] role_xref writing output... [ 72%] rubric writing output... [ 75%] section writing output... [ 79%] seealso writing output... [ 82%] subdir/index writing output... [ 86%] table writing output... [ 89%] toctree writing output... [ 93%] topic writing output... [ 96%] versionchange writing output... [100%] warnings +writing message catalogs... [ 3%] sphinx writing message catalogs... [ 6%] admonitions writing message catalogs... [ 10%] bom writing message catalogs... [ 13%] definition_terms writing message catalogs... [ 16%] docfields writing message catalogs... [ 20%] external_links writing message catalogs... [ 23%] figure writing message catalogs... [ 26%] footnote writing message catalogs... [ 30%] glossary_terms writing message catalogs... [ 33%] glossary_terms_inconsistency writing message catalogs... [ 36%] index writing message catalogs... [ 40%] index_entries writing message catalogs... [ 43%] label_target writing message catalogs... [ 46%] literalblock writing message catalogs... [ 50%] noqa writing message catalogs... [ 53%] only writing message catalogs... [ 56%] raw writing message catalogs... [ 60%] refs writing message catalogs... [ 63%] refs_inconsistency writing message catalogs... [ 66%] refs_python_domain writing message catalogs... [ 70%] role_xref writing message catalogs... [ 73%] rubric writing message catalogs... [ 76%] section writing message catalogs... [ 80%] seealso writing message catalogs... [ 83%] subdir/index writing message catalogs... [ 86%] table writing message catalogs... [ 90%] toctree writing message catalogs... [ 93%] topic writing message catalogs... [ 96%] versionchange writing message catalogs... [100%] warnings + +# warning: +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt:41: ERROR: Duplicate target name, cannot be used as a unique reference: "duplicated sub section". +/tmp/pytest-of-root/pytest-0/gettext/literalblock.txt:13: WARNING: Literal block expected; none found. +/tmp/pytest-of-root/pytest-0/gettext/admonitions.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/noqa.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/refs_python_domain.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/rubric.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/toctree.txt: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/gettext +# outdir: /tmp/pytest-of-root/pytest-0/gettext/_build/gettext +# status: +Running Sphinx v5.0.0b1 +loading pickled environment... done +building [gettext]: targets for 1 template files +reading templates... [100%] /tmp/pytest-of-root/pytest-0/gettext/_templates/contents.html +building [gettext]: all source files +updating environment: [config changed ('gettext_additional_targets')] 29 added, 0 changed, 0 removed +reading sources... [ 3%] admonitions reading sources... [ 6%] bom reading sources... [ 10%] definition_terms reading sources... [ 13%] docfields reading sources... [ 17%] external_links reading sources... [ 20%] figure reading sources... [ 24%] footnote reading sources... [ 27%] glossary_terms reading sources... [ 31%] glossary_terms_inconsistency reading sources... [ 34%] index reading sources... [ 37%] index_entries reading sources... [ 41%] label_target reading sources... [ 44%] literalblock reading sources... [ 48%] noqa reading sources... [ 51%] only reading sources... [ 55%] raw reading sources... [ 58%] refs reading sources... [ 62%] refs_inconsistency reading sources... [ 65%] refs_python_domain reading sources... [ 68%] role_xref reading sources... [ 72%] rubric reading sources... [ 75%] section reading sources... [ 79%] seealso reading sources... [ 82%] subdir/index reading sources... [ 86%] table reading sources... [ 89%] toctree reading sources... [ 93%] topic reading sources... [ 96%] versionchange reading sources... [100%] warnings +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 3%] admonitions writing output... [ 6%] bom writing output... [ 10%] definition_terms writing output... [ 13%] docfields writing output... [ 17%] external_links writing output... [ 20%] figure writing output... [ 24%] footnote writing output... [ 27%] glossary_terms writing output... [ 31%] glossary_terms_inconsistency writing output... [ 34%] index writing output... [ 37%] index_entries writing output... [ 41%] label_target writing output... [ 44%] literalblock writing output... [ 48%] noqa writing output... [ 51%] only writing output... [ 55%] raw writing output... [ 58%] refs writing output... [ 62%] refs_inconsistency writing output... [ 65%] refs_python_domain writing output... [ 68%] role_xref writing output... [ 72%] rubric writing output... [ 75%] section writing output... [ 79%] seealso writing output... [ 82%] subdir/index writing output... [ 86%] table writing output... [ 89%] toctree writing output... [ 93%] topic writing output... [ 96%] versionchange writing output... [100%] warnings +writing message catalogs... [ 3%] sphinx writing message catalogs... [ 6%] admonitions writing message catalogs... [ 10%] bom writing message catalogs... [ 13%] definition_terms writing message catalogs... [ 16%] docfields writing message catalogs... [ 20%] external_links writing message catalogs... [ 23%] figure writing message catalogs... [ 26%] footnote writing message catalogs... [ 30%] glossary_terms writing message catalogs... [ 33%] glossary_terms_inconsistency writing message catalogs... [ 36%] index writing message catalogs... [ 40%] index_entries writing message catalogs... [ 43%] label_target writing message catalogs... [ 46%] literalblock writing message catalogs... [ 50%] noqa writing message catalogs... [ 53%] only writing message catalogs... [ 56%] raw writing message catalogs... [ 60%] refs writing message catalogs... [ 63%] refs_inconsistency writing message catalogs... [ 66%] refs_python_domain writing message catalogs... [ 70%] role_xref writing message catalogs... [ 73%] rubric writing message catalogs... [ 76%] section writing message catalogs... [ 80%] seealso writing message catalogs... [ 83%] subdir writing message catalogs... [ 86%] table writing message catalogs... [ 90%] toctree writing message catalogs... [ 93%] topic writing message catalogs... [ 96%] versionchange writing message catalogs... [100%] warnings + +# warning: +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt:41: ERROR: Duplicate target name, cannot be used as a unique reference: "duplicated sub section". +/tmp/pytest-of-root/pytest-0/gettext/literalblock.txt:13: WARNING: Literal block expected; none found. +/tmp/pytest-of-root/pytest-0/gettext/admonitions.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/label_target.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/noqa.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/refs_python_domain.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/rubric.txt: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/gettext/toctree.txt: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/gettext-template +# outdir: /tmp/pytest-of-root/pytest-0/gettext-template/_build/gettext +# status: +Running Sphinx v5.0.0b1 +building [gettext]: targets for 2 template files +reading templates... [ 50%] /tmp/pytest-of-root/pytest-0/gettext-template/_templates/template1.html reading templates... [100%] /tmp/pytest-of-root/pytest-0/gettext-template/_templates/template2.html +building [gettext]: all source files +updating environment: [new config] 1 added, 0 changed, 0 removed +reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [100%] index +writing message catalogs... [ 50%] sphinx writing message catalogs... [100%] index + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: gettext +# srcdir: /tmp/pytest-of-root/pytest-0/root-gettext +# outdir: /tmp/pytest-of-root/pytest-0/root-gettext/_build/gettext +# status: +Running Sphinx v5.0.0b1 +loading pickled environment... done +building [gettext]: targets for 3 template files +reading templates... [ 33%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/contentssb.html reading templates... [ 66%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/customsb.html reading templates... [100%] /tmp/pytest-of-root/pytest-0/root-gettext/_templates/layout.html +building [gettext]: all source files +updating environment: 0 added, 0 changed, 0 removed +looking for now-outdated files... none found +preparing documents... done +writing output... [ 6%] autodoc writing output... [ 13%] bom writing output... [ 20%] extapi writing output... [ 26%] extensions writing output... [ 33%] footnote writing output... [ 40%] images writing output... [ 46%] includes writing output... [ 53%] index writing output... [ 60%] lists writing output... [ 66%] markup writing output... [ 73%] math writing output... [ 80%] objects writing output... [ 86%] otherext writing output... [ 93%] subdir/images writing output... [100%] subdir/includes +writing message catalogs... [100%] documentation + +# warning: +/tmp/pytest-of-root/pytest-0/root-gettext/objects.txt:143: WARNING: Unparseable C cross-reference: 'SphinxType *' +Invalid C declaration: Expected end of definition. [error at 11] + SphinxType * + -----------^ + +============================= slowest 25 durations ============================= +0.51s call tests/test_build_gettext.py::test_build_gettext +0.35s setup tests/test_build_gettext.py::test_build_gettext +0.29s call tests/test_build_gettext.py::test_gettext_template +0.27s call tests/test_build_gettext.py::test_gettext_disable_index_entries +0.25s call tests/test_build_gettext.py::test_msgfmt +0.23s call tests/test_build_gettext.py::test_gettext_index_entries +0.17s call tests/test_build_gettext.py::test_build_single_pot +0.01s setup tests/test_build_gettext.py::test_gettext_index_entries +0.01s setup tests/test_build_gettext.py::test_build_single_pot +0.01s call tests/test_build_gettext.py::test_gettext_template_msgid_order_in_sphinxpot +0.01s setup tests/test_build_gettext.py::test_msgfmt +0.01s setup tests/test_build_gettext.py::test_gettext_template_msgid_order_in_sphinxpot +0.01s setup tests/test_build_gettext.py::test_gettext_template +0.01s setup tests/test_build_gettext.py::test_gettext_disable_index_entries + +(10 durations < 0.005s hidden. Use -vv to show these durations.) +=========================== short test summary info ============================ +PASSED tests/test_build_gettext.py::test_Catalog_duplicated_message +PASSED tests/test_build_gettext.py::test_build_gettext +PASSED tests/test_build_gettext.py::test_gettext_index_entries +PASSED tests/test_build_gettext.py::test_gettext_disable_index_entries +PASSED tests/test_build_gettext.py::test_gettext_template +PASSED tests/test_build_gettext.py::test_gettext_template_msgid_order_in_sphinxpot +PASSED tests/test_build_gettext.py::test_build_single_pot +SKIPPED [1] tests/test_build_gettext.py:59: Skipped +========================= 7 passed, 1 skipped in 2.18s ========================= +py39: exit 0 (2.61 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_build_gettext.py pid=107 + py39: OK (2.61=setup[0.01]+cmd[2.61] seconds) + congratulations :) (2.71 seconds) ++ : '>>>>> End Test Output' ++ git checkout cab2d93076d0cca7c53fac885f927dde3e2a5fec tests/test_build_gettext.py +Updated 1 path from 04de92458 diff --git a/verify_logs/sphinx-doc__sphinx-10614_log.txt b/verify_logs/sphinx-doc__sphinx-10614_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..94acf17c1adbd44c28709d033c32484ca38efb05 --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10614_log.txt @@ -0,0 +1,634 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/ext/graphviz.py + modified: sphinx/ext/inheritance_diagram.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 7e907cebd0a37868f6f47aa6ebf910edaf675756 +Author: SWE-bench +Date: Wed Sep 10 16:01:40 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index a3dc56211..c76147de3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ git -c core.fileMode=false diff ac2b7599d212af7d04649959ce6926c63c3133fa +diff --git a/sphinx/ext/graphviz.py b/sphinx/ext/graphviz.py +index 8b21d9e3b..6738c49a0 100644 +--- a/sphinx/ext/graphviz.py ++++ b/sphinx/ext/graphviz.py +@@ -237,7 +237,7 @@ def fix_svg_relative_paths(self: SphinxTranslator, filepath: str) -> None: + old_path = path.join(self.builder.outdir, url) + new_path = path.relpath( + old_path, +- start=path.join(self.builder.outdir, self.builder.imgpath), ++ start=path.join(self.builder.outdir, self.builder.imagedir), + ) + modified_url = urlunsplit((scheme, hostname, new_path, query, fragment)) + +diff --git a/sphinx/ext/inheritance_diagram.py b/sphinx/ext/inheritance_diagram.py +index 6e3985512..ce8c825e6 100644 +--- a/sphinx/ext/inheritance_diagram.py ++++ b/sphinx/ext/inheritance_diagram.py +@@ -413,7 +413,7 @@ def html_visit_inheritance_diagram(self: HTML5Translator, node: inheritance_diag + for child in pending_xrefs: + if child.get('refuri') is not None: + if graphviz_output_format == 'SVG': +- urls[child['reftitle']] = "../" + child.get('refuri') ++ urls[child['reftitle']] = child.get('refuri') + else: + urls[child['reftitle']] = child.get('refuri') + elif child.get('refid') is not None: +diff --git a/tox.ini b/tox.ini +index a3dc56211..c76147de3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Installing build dependencies: started + Installing build dependencies: finished with status 'done' + Checking if build backend supports build_editable: started + Checking if build backend supports build_editable: finished with status 'done' + Getting requirements to build editable: started + Getting requirements to build editable: finished with status 'done' + Preparing editable metadata (pyproject.toml): started + Preparing editable metadata (pyproject.toml): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: Jinja2>=3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.1.4) +Requirement already satisfied: Pygments>=2.13 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.18.0) +Requirement already satisfied: docutils<0.21,>=0.18.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (0.20.1) +Requirement already satisfied: snowballstemmer>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.2.0) +Requirement already satisfied: babel>=2.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (0.7.16) +Requirement already satisfied: imagesize>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.4.1) +Requirement already satisfied: requests>=2.25.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.32.3) +Requirement already satisfied: packaging>=21.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (24.1) +Requirement already satisfied: importlib-metadata>=4.8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.0.11) +Requirement already satisfied: filelock in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.16.1) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.8->Sphinx==7.2.0) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=3.0->Sphinx==7.2.0) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.2.0) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.2.0) (0.5.1) +Building wheels for collected packages: Sphinx + Building editable for Sphinx (pyproject.toml): started + Building editable for Sphinx (pyproject.toml): finished with status 'done' + Created wheel for Sphinx: filename=sphinx-7.2.0-py3-none-any.whl size=4387 sha256=b069401c29b5af21c305a0fa49bc520fff890f94f78e7a7a1c046b4622abc00e + Stored in directory: /tmp/pip-ephem-wheel-cache-p94w8llb/wheels/7d/66/67/70d1ee2124ccf21d601c352e25cdca10f611f7c8b3f9ffb9e4 +Successfully built Sphinx +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 7.2.0 + Uninstalling Sphinx-7.2.0: + Successfully uninstalled Sphinx-7.2.0 +Successfully installed Sphinx-7.2.0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout ac2b7599d212af7d04649959ce6926c63c3133fa tests/roots/test-ext-inheritance_diagram/conf.py tests/roots/test-ext-inheritance_diagram/index.rst tests/roots/test-ext-inheritance_diagram/test.py tests/test_ext_inheritance_diagram.py +Updated 0 paths from bc0bc1d03 ++ git apply -v - +Checking patch tests/roots/test-ext-inheritance_diagram/conf.py... +Checking patch tests/roots/test-ext-inheritance_diagram/index.rst... +Checking patch tests/roots/test-ext-inheritance_diagram/subdir/index.rst... +Checking patch tests/roots/test-ext-inheritance_diagram/subdir/other.py... +Checking patch tests/roots/test-ext-inheritance_diagram/test.py... +Checking patch tests/test_ext_inheritance_diagram.py... +Applied patch tests/roots/test-ext-inheritance_diagram/conf.py cleanly. +Applied patch tests/roots/test-ext-inheritance_diagram/index.rst cleanly. +Applied patch tests/roots/test-ext-inheritance_diagram/subdir/index.rst cleanly. +Applied patch tests/roots/test-ext-inheritance_diagram/subdir/other.py cleanly. +Applied patch tests/roots/test-ext-inheritance_diagram/test.py cleanly. +Applied patch tests/test_ext_inheritance_diagram.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/roots/test-ext-inheritance_diagram/conf.py tests/roots/test-ext-inheritance_diagram/index.rst tests/roots/test-ext-inheritance_diagram/subdir/index.rst tests/roots/test-ext-inheritance_diagram/subdir/other.py tests/roots/test-ext-inheritance_diagram/test.py tests/test_ext_inheritance_diagram.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-ext-inheritance_diagram/conf.py tests/roots/test-ext-inheritance_diagram/index.rst tests/roots/test-ext-inheritance_diagram/subdir/index.rst tests/roots/test-ext-inheritance_diagram/subdir/other.py tests/roots/test-ext-inheritance_diagram/test.py tests/test_ext_inheritance_diagram.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-7.2.0+/7e907cebd, docutils-0.20.1 +base tmp_path: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: pyproject.toml +collected 6 items + +tests/test_ext_inheritance_diagram.py ..F... [100%] + +=================================== FAILURES =================================== +______________________ test_inheritance_diagram_svg_html _______________________ + +tmp_path = PosixPath('/tmp/pytest-of-root/pytest-0/test_inheritance_diagram_svg_h0') +app = + + @pytest.mark.sphinx('html', testroot='ext-inheritance_diagram', + confoverrides={'graphviz_output_format': 'svg'}) + @pytest.mark.usefixtures('if_graphviz_found') + def test_inheritance_diagram_svg_html(tmp_path, app): + inv_file = tmp_path / 'inventory' + inv_file.write_bytes(subdir_inventory) + app.config.intersphinx_mapping = { + "subdir": ('https://example.org', str(inv_file)), + } + app.config.intersphinx_cache_limit = 0 + normalize_intersphinx_mapping(app, app.config) + load_mappings(app) +  + app.builder.build_all() +  + content = (app.outdir / 'index.html').read_text(encoding='utf8') + base_svgs = re.findall('\n' + '
' + '\n' + '

Inheritance diagram of test.Foo

' + '
\n
\n

' + 'Test Foo!\xb6

\n
\n\n') +  + assert re.search(pattern, content, re.M) +  + subdir_content = (app.outdir / 'subdir/index.html').read_text(encoding='utf8') + subdir_svgs = re.findall(' assert abs_uri.exists() +E AssertionError: assert False +E + where False = exists() +E + where exists = PosixPath('/tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/_build/index.html').exists + +tests/test_ext_inheritance_diagram.py:246: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram +# outdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/_build/html +# status: +Running Sphinx v7.2.0+/7e907cebd +loading pickled environment... done +loading intersphinx inventory from /tmp/pytest-of-root/pytest-0/test_inheritance_diagram_svg_h0/inventory... +building [mo]: all of 0 po files +writing output...  +building [html]: all source files +updating environment: [config changed ('intersphinx_mapping')] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] subdir/index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +copying assets... copying static files... done +copying extra files... done +done +writing output... [ 50%] index writing output... [100%] subdir/index +generating indices... genindex done +writing additional pages... search done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: +/tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/subdir/index.rst: WARNING: document isn't included in any toctree + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/inheritance +# outdir: /tmp/pytest-of-root/pytest-0/inheritance/_build/html +# status: +Running Sphinx v7.2.0+/7e907cebd +building [mo]: all of 0 po files +writing output...  +building [html]: all source files +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] basic_diagram reading sources... [ 29%] diagram_module_w_2_top_classes reading sources... [ 43%] diagram_w_1_top_class reading sources... [ 57%] diagram_w_2_top_classes reading sources... [ 71%] diagram_w_nested_classes reading sources... [ 86%] diagram_w_parts reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +copying assets... copying static files... done +copying extra files... done +done +writing output... [ 14%] basic_diagram writing output... [ 29%] diagram_module_w_2_top_classes writing output... [ 43%] diagram_w_1_top_class writing output... [ 57%] diagram_w_2_top_classes writing output... [ 71%] diagram_w_nested_classes writing output... [ 86%] diagram_w_parts writing output... [100%] index +generating indices... genindex done +writing additional pages... search done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram +# outdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/_build/html +# status: +Running Sphinx v7.2.0+/7e907cebd +loading intersphinx inventory from /tmp/pytest-of-root/pytest-0/test_inheritance_diagram_png_h0/inventory... +building [mo]: all of 0 po files +writing output...  +building [html]: all source files +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] subdir/index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +copying assets... copying static files... done +copying extra files... done +done +writing output... [ 50%] index writing output... [100%] subdir/index +generating indices... genindex done +writing additional pages... search done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: +WARNING: The pre-Sphinx 1.0 'intersphinx_mapping' format is deprecated and will be removed in Sphinx 8. Update to the current format as described in the documentation. Hint: "intersphinx_mapping = {'': ('https://example.org', '/tmp/pytest-of-root/pytest-0/test_inheritance_diagram_png_h0/inventory')}".https://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html#confval-intersphinx_mapping +/tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/subdir/index.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: latex +# srcdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram +# outdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/_build/latex +# status: +Running Sphinx v7.2.0+/7e907cebd +loading pickled environment... done +building [mo]: all of 0 po files +writing output...  +building [latex]: all source files +updating environment: [config changed ('intersphinx_mapping')] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] subdir/index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +copying TeX support files... copying TeX support files... +done +processing python.tex... index +resolving references... +done +writing... done + +# warning: +/tmp/pytest-of-root/pytest-0/ext-inheritance_diagram/subdir/index.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram-alias +# outdir: /tmp/pytest-of-root/pytest-0/ext-inheritance_diagram-alias/_build/html +# status: +Running Sphinx v7.2.0+/7e907cebd +building [mo]: all of 0 po files +writing output...  +building [html]: all source files +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] index reading sources... [100%] subdir/index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +copying assets... copying static files... done +copying extra files... done +done +writing output... [ 50%] index writing output... [100%] subdir/index +generating indices... genindex done +writing additional pages... search done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: +/tmp/pytest-of-root/pytest-0/ext-inheritance_diagram-alias/subdir/index.rst: WARNING: document isn't included in any toctree + +============================= slowest 25 durations ============================= +0.22s call tests/test_ext_inheritance_diagram.py::test_inheritance_diagram +0.14s setup tests/test_ext_inheritance_diagram.py::test_inheritance_diagram +0.11s call tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_png_html +0.11s call tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_svg_html +0.10s call tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex_alias +0.05s call tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex +0.02s setup tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex +0.02s setup tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_svg_html +0.01s setup tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_png_html +0.01s setup tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex_alias + +(8 durations < 0.005s hidden. Use -vv to show these durations.) +=========================== short test summary info ============================ +PASSED tests/test_ext_inheritance_diagram.py::test_inheritance_diagram +PASSED tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_png_html +PASSED tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex +PASSED tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_latex_alias +PASSED tests/test_ext_inheritance_diagram.py::test_import_classes +FAILED tests/test_ext_inheritance_diagram.py::test_inheritance_diagram_svg_html - AssertionError: assert False +========================= 1 failed, 5 passed in 1.01s ========================== +py39: exit 1 (1.33 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-ext-inheritance_diagram/conf.py tests/roots/test-ext-inheritance_diagram/index.rst tests/roots/test-ext-inheritance_diagram/subdir/index.rst tests/roots/test-ext-inheritance_diagram/subdir/other.py tests/roots/test-ext-inheritance_diagram/test.py tests/test_ext_inheritance_diagram.py pid=112 + py39: FAIL code 1 (2.38=setup[1.05]+cmd[1.33] seconds) + evaluation failed :( (2.43 seconds) ++ : '>>>>> End Test Output' ++ git checkout ac2b7599d212af7d04649959ce6926c63c3133fa tests/roots/test-ext-inheritance_diagram/conf.py tests/roots/test-ext-inheritance_diagram/index.rst tests/roots/test-ext-inheritance_diagram/test.py tests/test_ext_inheritance_diagram.py +Updated 4 paths from bc0bc1d03 diff --git a/verify_logs/sphinx-doc__sphinx-10673_log.txt b/verify_logs/sphinx-doc__sphinx-10673_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..c965be4fba56a15a948723bd767bd4da59daca39 --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-10673_log.txt @@ -0,0 +1,786 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/directives/other.py + modified: sphinx/environment/adapters/toctree.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit f6f04940a7524b3a299bdf178af9f65b49a6b7da +Author: SWE-bench +Date: Wed Sep 10 16:01:44 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index 7ca990b56..a0708b02c 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -30,7 +30,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ git -c core.fileMode=false diff f35d2a6cc726f97d0e859ca7a0e1729f7da8a6c8 +diff --git a/sphinx/directives/other.py b/sphinx/directives/other.py +index 35e16e623..60dc303c2 100644 +--- a/sphinx/directives/other.py ++++ b/sphinx/directives/other.py +@@ -119,6 +119,27 @@ class TocTree(SphinxDirective): + if url_re.match(ref) or ref == 'self': + toctree['entries'].append((title, ref)) + elif docname not in self.env.found_docs: ++ # special documents like genindex, modindex, search are not ++ # in found_docs but are valid toctree entries ++ # modindex is an alias for py-modindex ++ if docname == 'modindex': ++ docname = 'py-modindex' ++ # check if this is a valid special document ++ is_special = docname in ('genindex', 'search') ++ if not is_special and docname.endswith('-modindex'): ++ # check if the domain exists and has a module index ++ domain_name = docname[:-9] # remove '-modindex' ++ if domain_name in self.env.domains: ++ domain = self.env.domains[domain_name] ++ # check if the domain has a module index ++ for indexcls in domain.indices: ++ if indexcls.name == 'modindex': ++ is_special = True ++ break ++ if is_special: ++ toctree['entries'].append((title, docname)) ++ toctree['includefiles'].append(docname) ++ continue + if excluded(self.env.doc2path(docname, False)): + message = __('toctree contains reference to excluded document %r') + subtype = 'excluded' +diff --git a/sphinx/environment/adapters/toctree.py b/sphinx/environment/adapters/toctree.py +index 9678e3c7c..0aa2dd528 100644 +--- a/sphinx/environment/adapters/toctree.py ++++ b/sphinx/environment/adapters/toctree.py +@@ -165,6 +165,39 @@ class TocTree: + ref, location=toctreenode) + except KeyError: + # this is raised if the included file does not exist ++ # special documents like genindex, modindex, search are not ++ # in tocs but are valid toctree entries ++ # modindex is an alias for py-modindex ++ if ref == 'modindex': ++ ref = 'py-modindex' ++ # check if this is a valid special document ++ is_special = ref in ('genindex', 'search') ++ if not is_special and ref.endswith('-modindex'): ++ # check if the domain exists and has a module index ++ domain_name = ref[:-9] # remove '-modindex' ++ if domain_name in self.env.domains: ++ domain = self.env.domains[domain_name] ++ # check if the domain has a module index ++ for indexcls in domain.indices: ++ if indexcls.name == 'modindex': ++ is_special = True ++ break ++ if is_special: ++ # create a reference to the special document ++ if title is None: ++ title = ref ++ reference = nodes.reference('', '', internal=True, ++ refuri=ref, anchorname='', ++ *[nodes.Text(title)]) ++ para = addnodes.compact_paragraph('', '', reference) ++ item = nodes.list_item('', para) ++ toc = nodes.bullet_list('', item) ++ if separate: ++ entries.append(toc) ++ else: ++ children = cast(Iterable[nodes.Element], toc) ++ entries.extend(children) ++ continue + if excluded(self.env.doc2path(ref, False)): + message = __('toctree contains reference to excluded document %r') + elif not included(self.env.doc2path(ref, False)): +diff --git a/tox.ini b/tox.ini +index 7ca990b56..a0708b02c 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -30,7 +30,7 @@ setenv = + PYTHONWARNINGS = all + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:du-latest] + commands = ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.0.0) +Requirement already satisfied: Jinja2>=3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (3.1.4) +Requirement already satisfied: Pygments>=2.12 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.18.0) +Requirement already satisfied: docutils<0.20,>=0.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (0.19) +Requirement already satisfied: snowballstemmer>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.2.0) +Requirement already satisfied: babel>=2.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (0.7.16) +Requirement already satisfied: imagesize>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (2.32.3) +Requirement already satisfied: packaging>=21.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (24.1) +Requirement already satisfied: importlib-metadata>=4.8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==5.2.0.dev20260707) (3.0.11) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.8->Sphinx==5.2.0.dev20260707) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=3.0->Sphinx==5.2.0.dev20260707) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.2.0.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.2.0.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==5.2.0.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in 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/opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==5.2.0.dev20260707) (0.5.1) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 5.2.0.dev20250910 + Uninstalling Sphinx-5.2.0.dev20250910: + Successfully uninstalled Sphinx-5.2.0.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==5.2.0.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout f35d2a6cc726f97d0e859ca7a0e1729f7da8a6c8 tests/test_environment_toctree.py +Updated 0 paths from a38c6b4b1 ++ git apply -v - +Checking patch tests/roots/test-toctree-index/conf.py... +Checking patch tests/roots/test-toctree-index/foo.rst... +Checking patch tests/roots/test-toctree-index/index.rst... +:35: new blank line at EOF. ++ +Checking patch tests/test_environment_toctree.py... +Applied patch tests/roots/test-toctree-index/conf.py cleanly. +Applied patch tests/roots/test-toctree-index/foo.rst cleanly. +Applied patch tests/roots/test-toctree-index/index.rst cleanly. +Applied patch tests/test_environment_toctree.py cleanly. +warning: 1 line adds whitespace errors. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/roots/test-toctree-index/conf.py tests/roots/test-toctree-index/foo.rst tests/roots/test-toctree-index/index.rst tests/test_environment_toctree.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-toctree-index/conf.py tests/roots/test-toctree-index/foo.rst tests/roots/test-toctree-index/index.rst tests/test_environment_toctree.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-5.2.0+/f6f04940a, docutils-0.19 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +collected 10 items + +tests/test_environment_toctree.py .........F [100%] + +=================================== FAILURES =================================== +______________________________ test_toctree_index ______________________________ + +app = + + @pytest.mark.sphinx('xml', testroot='toctree-index') + def test_toctree_index(app): + app.build() + toctree = app.env.tocs['index'] + assert_node(toctree, + [bullet_list, ([list_item, (compact_paragraph, # [0][0] + [bullet_list, (addnodes.toctree, # [0][1][0] + addnodes.toctree)])])]) # [0][1][1] +> assert_node(toctree[0][1][1], addnodes.toctree, + caption="Indices", glob=False, hidden=False, + titlesonly=False, maxdepth=-1, numbered=0, + entries=[(None, 'genindex'), (None, 'modindex'), (None, 'search')]) + +tests/test_environment_toctree.py:359: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +node = , cls = , xpath = '' +kwargs = {'caption': 'Indices', 'entries': [(None, 'genindex'), (None, 'modindex'), (None, 'search')], 'glob': False, 'hidden': False, ...} +key = 'entries' +value = [(None, 'genindex'), (None, 'modindex'), (None, 'search')] + + def assert_node(node: Node, cls: Any = None, xpath: str = "", **kwargs: Any) -> None: + if cls: + if isinstance(cls, list): + assert_node(node, cls[0], xpath=xpath, **kwargs) + if cls[1:]: + if isinstance(cls[1], tuple): + assert_node(node, cls[1], xpath=xpath, **kwargs) + else: + assert isinstance(node, nodes.Element), \ + 'The node%s does not have any children' % xpath + assert len(node) == 1, \ + 'The node%s has %d child nodes, not one' % (xpath, len(node)) + assert_node(node[0], cls[1:], xpath=xpath + "[0]", **kwargs) + elif isinstance(cls, tuple): + assert isinstance(node, (list, nodes.Element)), \ + 'The node%s does not have any items' % xpath + assert len(node) == len(cls), \ + 'The node%s has %d child nodes, not %r' % (xpath, len(node), len(cls)) + for i, nodecls in enumerate(cls): + path = xpath + "[%d]" % i + assert_node(node[i], nodecls, xpath=path, **kwargs) + elif isinstance(cls, str): + assert node == cls, 'The node %r is not %r: %r' % (xpath, cls, node) + else: + assert isinstance(node, cls), \ + 'The node%s is not subclass of %r: %r' % (xpath, cls, node) +  + if kwargs: + assert isinstance(node, nodes.Element), \ + 'The node%s does not have any attributes' % xpath +  + for key, value in kwargs.items(): + assert key in node, \ + 'The node%s does not have %r attribute: %r' % (xpath, key, node) +> assert node[key] == value, \ + 'The node%s[%s] is not %r: %r' % (xpath, key, value, node[key]) +E AssertionError: The node[entries] is not [(None, 'genindex'), (None, 'modindex'), (None, 'search')]: [(None, 'genindex'), (None, 'py-modindex'), (None, 'search')] + +sphinx/testing/util.py:74: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-index +# outdir: /tmp/pytest-of-root/pytest-0/toctree-index/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +building [mo]: targets for 0 po files that are out of date +building [xml]: targets for 2 source files that are out of date +updating environment: [new config] 2 added, 0 changed, 0 removed +reading sources... [ 50%] foo reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 50%] foo writing output... [100%] index +build succeeded. + +The XML files are in ../tmp/pytest-of-root/pytest-0/toctree-index/_build/xml. + +# warning: + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +building [mo]: targets for 0 po files that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: dummy +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/dummy +# status: +Running Sphinx v5.2.0+/f6f04940a +building [mo]: targets for 0 po files that are out of date +building [dummy]: targets for 12 source files that are out of date +updating environment: [new config] 12 added, 0 changed, 0 removed +reading sources... [ 8%] bar/bar_1 reading sources... [ 16%] bar/bar_2 reading sources... [ 25%] bar/bar_3 reading sources... [ 33%] bar/bar_4/index reading sources... [ 41%] bar/index reading sources... [ 50%] baz reading sources... [ 58%] foo reading sources... [ 66%] index reading sources... [ 75%] quux reading sources... [ 83%] qux/index reading sources... [ 91%] qux/qux_1 reading sources... [100%] qux/qux_2 +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 8%] bar/bar_1 writing output... [ 16%] bar/bar_2 writing output... [ 25%] bar/bar_3 writing output... [ 33%] bar/bar_4/index writing output... [ 41%] bar/index writing output... [ 50%] baz writing output... [ 58%] foo writing output... [ 66%] index writing output... [ 75%] quux writing output... [ 83%] qux/index writing output... [ 91%] qux/qux_1 writing output... [100%] qux/qux_2 +build succeeded, 1 warning. + +The dummy builder generates no files. + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-glob/quux.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: xml +# srcdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic +# outdir: /tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml +# status: +Running Sphinx v5.2.0+/f6f04940a +loading pickled environment... done +s that are out of date +building [xml]: targets for 7 source files that are out of date +updating environment: [new config] 7 added, 0 changed, 0 removed +reading sources... [ 14%] bar reading sources... [ 28%] baz reading sources... [ 42%] foo reading sources... [ 57%] index reading sources... [ 71%] quux reading sources... [ 85%] qux reading sources... [100%] tocdepth +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 14%] bar writing output... [ 28%] baz writing output... [ 42%] foo writing output... [ 57%] index writing output... [ 71%] quux writing output... [ 85%] qux writing output... [100%] tocdepth +build succeeded, 2 warnings. + +The XML files are in ../tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/_build/xml. + +# warning: +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/qux.rst: WARNING: document isn't included in any toctree +/tmp/pytest-of-root/pytest-0/test_environment_toctree_basic/tocdepth.rst: WARNING: document isn't included in any toctree + +============================= slowest 25 durations ============================= +0.21s setup tests/test_environment_toctree.py::test_process_doc +0.06s call tests/test_environment_toctree.py::test_process_doc +0.02s call tests/test_environment_toctree.py::test_glob +0.01s call tests/test_environment_toctree.py::test_toctree_index +0.01s setup tests/test_environment_toctree.py::test_glob +0.01s setup tests/test_environment_toctree.py::test_get_toc_for_only +0.01s setup tests/test_environment_toctree.py::test_get_toc_for +0.01s setup tests/test_environment_toctree.py::test_get_toctree_for_maxdepth +0.01s setup tests/test_environment_toctree.py::test_get_toc_for_tocdepth +0.01s setup tests/test_environment_toctree.py::test_get_toctree_for +0.01s setup tests/test_environment_toctree.py::test_toctree_index +0.01s setup tests/test_environment_toctree.py::test_get_toctree_for_collapse +0.01s setup tests/test_environment_toctree.py::test_get_toctree_for_includehidden + +(12 durations < 0.005s hidden. Use -vv to show these durations.) +=========================== short test summary info ============================ +PASSED tests/test_environment_toctree.py::test_process_doc +PASSED tests/test_environment_toctree.py::test_glob +PASSED tests/test_environment_toctree.py::test_get_toc_for +PASSED tests/test_environment_toctree.py::test_get_toc_for_only +PASSED tests/test_environment_toctree.py::test_get_toc_for_tocdepth +PASSED tests/test_environment_toctree.py::test_get_toctree_for +PASSED tests/test_environment_toctree.py::test_get_toctree_for_collapse +PASSED tests/test_environment_toctree.py::test_get_toctree_for_maxdepth +PASSED tests/test_environment_toctree.py::test_get_toctree_for_includehidden +FAILED tests/test_environment_toctree.py::test_toctree_index - AssertionError: The node[entries] is not [(None, 'genindex'), (None, 'modin... +========================= 1 failed, 9 passed in 0.51s ========================== +py39: exit 1 (0.84 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-toctree-index/conf.py tests/roots/test-toctree-index/foo.rst tests/roots/test-toctree-index/index.rst tests/test_environment_toctree.py pid=109 + py39: FAIL code 1 (0.85=setup[0.01]+cmd[0.84] seconds) + evaluation failed :( (0.90 seconds) ++ : '>>>>> End Test Output' ++ git checkout f35d2a6cc726f97d0e859ca7a0e1729f7da8a6c8 tests/test_environment_toctree.py +Updated 1 path from a38c6b4b1 diff --git a/verify_logs/sphinx-doc__sphinx-11445_log.txt b/verify_logs/sphinx-doc__sphinx-11445_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6274642fb7ca6ecf7fe1b184c86cdd28059d94ed --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-11445_log.txt @@ -0,0 +1,496 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/util/rst.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 57b0661d99aa58b3175c55f720304ab0ef5b3b0a +Author: SWE-bench +Date: Wed Sep 10 16:02:22 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index 512aa5f74..84c8093a3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ git -c core.fileMode=false diff 71db08c05197545944949d5aa76cd340e7143627 +diff --git a/sphinx/util/rst.py b/sphinx/util/rst.py +index 7a1538325..14e4f28bf 100644 +--- a/sphinx/util/rst.py ++++ b/sphinx/util/rst.py +@@ -25,7 +25,24 @@ except ImportError: + + logger = logging.getLogger(__name__) + +-docinfo_re = re.compile(':\\w+:.*?') ++# Standard bibliographic field names for RST documents ++# These are used to identify docinfo fields at the beginning of documents ++DOCINFO_FIELDS = ( ++ 'author', ++ 'authors', ++ 'organization', ++ 'address', ++ 'contact', ++ 'version', ++ 'revision', ++ 'status', ++ 'date', ++ 'copyright', ++ 'dedication', ++ 'abstract', ++ 'title', # Sphinx extension ++) ++docinfo_re = re.compile(f':(?:{"|".join(DOCINFO_FIELDS)}):.*?') + symbols_re = re.compile(r'([!-\-/:-@\[-`{-~])') # symbols without dot(0x2e) + SECTIONING_CHARS = ['=', '-', '~'] + +diff --git a/tox.ini b/tox.ini +index 512aa5f74..84c8093a3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Installing build dependencies: started + Installing build dependencies: finished with status 'done' + Checking if build backend supports build_editable: started + Checking if build backend supports build_editable: finished with status 'done' + Getting requirements to build editable: started + Getting requirements to build editable: finished with status 'done' + Preparing editable metadata (pyproject.toml): started + Preparing editable metadata (pyproject.toml): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.0.0) +Requirement already satisfied: Jinja2>=3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (3.1.4) +Requirement already satisfied: Pygments>=2.13 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.18.0) +Requirement already satisfied: docutils<0.21,>=0.18.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (0.20.1) +Requirement already satisfied: snowballstemmer>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.2.0) +Requirement already satisfied: babel>=2.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (0.7.16) +Requirement already satisfied: imagesize>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (1.4.1) +Requirement already satisfied: requests>=2.25.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (2.32.3) +Requirement already satisfied: packaging>=21.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (24.1) +Requirement already satisfied: importlib-metadata>=4.8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (1.1) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (3.0.11) +Requirement already satisfied: filelock in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.1.0) (3.16.1) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.8->Sphinx==7.1.0) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=3.0->Sphinx==7.1.0) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.1.0) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.1.0) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.1.0) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.1.0) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.1.0) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.1.0) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.1.0) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.1.0) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.1.0) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.1.0) (0.5.1) +Building wheels for collected packages: Sphinx + Building editable for Sphinx (pyproject.toml): started + Building editable for Sphinx (pyproject.toml): finished with status 'done' + Created wheel for Sphinx: filename=sphinx-7.1.0-py3-none-any.whl size=4520 sha256=dafc506823b431bdd1387eae0a6f1b3b31fcab7e5d86648e31ec481162f40cde + Stored in directory: /tmp/pip-ephem-wheel-cache-16hc0zg_/wheels/7d/66/67/70d1ee2124ccf21d601c352e25cdca10f611f7c8b3f9ffb9e4 +Successfully built Sphinx +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 7.1.0 + Uninstalling Sphinx-7.1.0: + Successfully uninstalled Sphinx-7.1.0 +Successfully installed Sphinx-7.1.0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout 71db08c05197545944949d5aa76cd340e7143627 tests/test_util_rst.py +Updated 0 paths from 1afe5fca8 ++ git apply -v - +Checking patch tests/test_util_rst.py... +Applied patch tests/test_util_rst.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_util_rst.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_util_rst.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-7.1.0+/57b0661d9, docutils-0.20.1 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: pyproject.toml +collected 10 items + +tests/test_util_rst.py .......... [100%] + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/root +# outdir: /tmp/pytest-of-root/pytest-0/root/_build/html +# status: +Running Sphinx v7.1.0+/57b0661d9 + +# warning: + +============================= slowest 25 durations ============================= +0.28s setup tests/test_util_rst.py::test_append_epilog +0.01s setup tests/test_util_rst.py::test_prepend_prolog_without_CR +0.01s setup tests/test_util_rst.py::test_prepend_prolog +0.01s setup tests/test_util_rst.py::test_prepend_prolog_with_CR +0.01s setup tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections_with_newline +0.01s setup tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections +0.01s setup tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections_without_newline + +(18 durations < 0.005s hidden. Use -vv to show these durations.) +=========================== short test summary info ============================ +PASSED tests/test_util_rst.py::test_escape +PASSED tests/test_util_rst.py::test_append_epilog +PASSED tests/test_util_rst.py::test_prepend_prolog +PASSED tests/test_util_rst.py::test_prepend_prolog_with_CR +PASSED tests/test_util_rst.py::test_prepend_prolog_without_CR +PASSED tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections +PASSED tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections_with_newline +PASSED tests/test_util_rst.py::test_prepend_prolog_with_roles_in_sections_without_newline +PASSED tests/test_util_rst.py::test_textwidth +PASSED tests/test_util_rst.py::test_heading +============================== 10 passed in 0.37s ============================== +py39: exit 0 (0.74 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/test_util_rst.py pid=112 + py39: OK (0.74=setup[0.01]+cmd[0.74] seconds) + congratulations :) (0.80 seconds) ++ : '>>>>> End Test Output' ++ git checkout 71db08c05197545944949d5aa76cd340e7143627 tests/test_util_rst.py +Updated 1 path from 1afe5fca8 diff --git a/verify_logs/sphinx-doc__sphinx-11510_log.txt b/verify_logs/sphinx-doc__sphinx-11510_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..fb49b0c1dff555d314849cadd4a9eff8b7082e3a --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-11510_log.txt @@ -0,0 +1,707 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/directives/other.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 7ebcb8ba30a0b2c6ac43d83b93a71c61e4a6f5a9 +Author: SWE-bench +Date: Wed Sep 10 16:02:52 2025 +0000 + + SWE-bench + +diff --git a/tox.ini b/tox.ini +index a3dc56211..c76147de3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ git -c core.fileMode=false diff 6cb783c0024a873722952a67ebb9f41771c8eb6d +diff --git a/sphinx/directives/other.py b/sphinx/directives/other.py +index 19f7c0a8d..3a2882916 100644 +--- a/sphinx/directives/other.py ++++ b/sphinx/directives/other.py +@@ -1,11 +1,14 @@ + from __future__ import annotations + + import re ++from pathlib import Path + from typing import TYPE_CHECKING, Any, cast + +-from docutils import nodes ++from docutils import io, nodes, statemachine, utils ++from docutils.io import FileInput + from docutils.parsers.rst import directives + from docutils.parsers.rst.directives.admonitions import BaseAdmonition ++from docutils.parsers.rst.directives.body import CodeBlock, NumberLines + from docutils.parsers.rst.directives.misc import Class + from docutils.parsers.rst.directives.misc import Include as BaseInclude + +@@ -373,10 +376,158 @@ class Include(BaseInclude, SphinxDirective): + self.arguments[0].endswith('>'): + # docutils "standard" includes, do not do path processing + return super().run() ++ ++ if not self.state.document.settings.file_insertion_enabled: ++ raise self.warning('"%s" directive disabled.' % self.name) ++ ++ current_source = self.state.document.current_source ++ # Handle path resolution: absolute paths (starting with /) are relative to srcdir ++ # relative paths are relative to the current document's directory ++ + rel_filename, filename = self.env.relfn2path(self.arguments[0]) +- self.arguments[0] = filename +- self.env.note_included(filename) +- return super().run() ++ path = filename ++ encoding = self.options.get( ++ 'encoding', self.state.document.settings.input_encoding) ++ e_handler = self.state.document.settings.input_encoding_error_handler ++ tab_width = self.options.get( ++ 'tab-width', self.state.document.settings.tab_width) ++ try: ++ include_file = FileInput(source_path=path, ++ encoding=encoding, ++ error_handler=e_handler) ++ except UnicodeEncodeError: ++ raise self.severe(f'Problems with "{self.name}" directive path:\n' ++ f'Cannot encode input file path "{path}" ' ++ '(wrong locale?).') ++ except OSError as error: ++ raise self.severe(f'Problems with "{self.name}" directive ' ++ f'path:\n{io.error_string(error)}.') ++ else: ++ self.state.document.settings.record_dependencies.add(path) ++ self.env.note_included(path) ++ ++ # Get to-be-included content ++ startline = self.options.get('start-line', None) ++ endline = self.options.get('end-line', None) ++ try: ++ if startline or (endline is not None): ++ lines = include_file.readlines() ++ rawtext = ''.join(lines[startline:endline]) ++ else: ++ rawtext = include_file.read() ++ except UnicodeError as error: ++ raise self.severe(f'Problem with "{self.name}" directive:\n' ++ + io.error_string(error)) ++ # start-after/end-before: no restrictions on newlines in match-text, ++ # and no restrictions on matching inside lines vs. line boundaries ++ after_text = self.options.get('start-after', None) ++ if after_text: ++ # skip content in rawtext before *and incl.* a matching text ++ after_index = rawtext.find(after_text) ++ if after_index < 0: ++ raise self.severe('Problem with "start-after" option of "%s" ' ++ 'directive:\nText not found.' % self.name) ++ rawtext = rawtext[after_index + len(after_text):] ++ before_text = self.options.get('end-before', None) ++ if before_text: ++ # skip content in rawtext after *and incl.* a matching text ++ before_index = rawtext.find(before_text) ++ if before_index < 0: ++ raise self.severe('Problem with "end-before" option of "%s" ' ++ 'directive:\nText not found.' % self.name) ++ rawtext = rawtext[:before_index] ++ ++ # Emit "source-read" event for included file ++ arg = [rawtext] ++ self.env.events.emit('source-read', path, arg) ++ rawtext = arg[0] ++ ++ include_lines = statemachine.string2lines(rawtext, tab_width, ++ convert_whitespace=True) ++ for i, line in enumerate(include_lines): ++ if len(line) > self.state.document.settings.line_length_limit: ++ raise self.warning('"%s": line %d exceeds the' ++ ' line-length-limit.' % (path, i+1)) ++ ++ if 'literal' in self.options: ++ # Don't convert tabs to spaces, if `tab_width` is negative. ++ if tab_width >= 0: ++ text = rawtext.expandtabs(tab_width) ++ else: ++ text = rawtext ++ literal_block = nodes.literal_block( ++ rawtext, source=path, ++ classes=self.options.get('class', [])) ++ literal_block.line = 1 ++ self.add_name(literal_block) ++ if 'number-lines' in self.options: ++ try: ++ startline = int(self.options['number-lines'] or 1) ++ except ValueError: ++ raise self.error(':number-lines: with non-integer ' ++ 'start value') ++ endline = startline + len(include_lines) ++ if text.endswith('\n'): ++ text = text[:-1] ++ tokens = NumberLines([([], text)], startline, endline) ++ for classes, value in tokens: ++ if classes: ++ literal_block += nodes.inline(value, value, ++ classes=classes) ++ else: ++ literal_block += nodes.Text(value) ++ else: ++ literal_block += nodes.Text(text) ++ return [literal_block] ++ ++ if 'code' in self.options: ++ self.options['source'] = path ++ # Don't convert tabs to spaces, if `tab_width` is negative: ++ if tab_width < 0: ++ include_lines = rawtext.splitlines() ++ codeblock = CodeBlock(self.name, ++ [self.options.pop('code')], # arguments ++ self.options, ++ include_lines, # content ++ self.lineno, ++ self.content_offset, ++ self.block_text, ++ self.state, ++ self.state_machine) ++ return codeblock.run() ++ ++ # Prevent circular inclusion: ++ clip_options = (startline, endline, before_text, after_text) ++ include_log = self.state.document.include_log ++ # log entries are tuples (, ) ++ if not include_log: # new document, initialize with document source ++ include_log.append((utils.relative_path(None, current_source), ++ (None, None, None, None))) ++ if (path, clip_options) in include_log: ++ master_paths = (pth for (pth, opt) in reversed(include_log)) ++ inclusion_chain = '\n> '.join((path, *master_paths)) ++ raise self.warning('circular inclusion in "%s" directive:\n%s' ++ % (self.name, inclusion_chain)) ++ ++ if 'parser' in self.options: ++ # parse into a dummy document and return created nodes ++ document = utils.new_document(path, self.state.document.settings) ++ document.include_log = include_log + [(path, clip_options)] ++ parser = self.options['parser']() ++ parser.parse('\n'.join(include_lines), document) ++ # clean up doctree and complete parsing ++ document.transformer.populate_from_components((parser,)) ++ document.transformer.apply_transforms() ++ return document.children ++ ++ # Include as rST source: ++ # ++ # mark end (cf. parsers.rst.states.Body.comment()) ++ include_lines += ['', '.. end of inclusion from "%s"' % path] ++ self.state_machine.insert_input(include_lines, path) ++ # update include-log ++ include_log.append((path, clip_options)) ++ return [] + + + def setup(app: Sphinx) -> dict[str, Any]: +diff --git a/tox.ini b/tox.ini +index a3dc56211..c76147de3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -24,7 +24,7 @@ setenv = + PYTHONWARNINGS = error + PYTEST_ADDOPTS = {env:PYTEST_ADDOPTS:} --color yes + commands= +- python -X dev -X warn_default_encoding -m pytest --durations 25 {posargs} ++ python -X dev -X warn_default_encoding -m pytest -rA --durations 25 {posargs} + + [testenv:docs] + basepython = python3 ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Installing build dependencies: started + Installing build dependencies: finished with status 'done' + Checking if build backend supports build_editable: started + Checking if build backend supports build_editable: finished with status 'done' + Getting requirements to build editable: started + Getting requirements to build editable: finished with status 'done' + Preparing editable metadata (pyproject.toml): started + Preparing editable metadata (pyproject.toml): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-devhelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.1.0) +Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: sphinxcontrib-qthelp in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: Jinja2>=3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.1.4) +Requirement already satisfied: Pygments>=2.14 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.18.0) +Requirement already satisfied: docutils<0.21,>=0.18.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (0.20.1) +Requirement already satisfied: snowballstemmer>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.2.0) +Requirement already satisfied: babel>=2.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.16.0) +Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (0.7.16) +Requirement already satisfied: imagesize>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.4.1) +Requirement already satisfied: requests>=2.25.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (2.32.3) +Requirement already satisfied: packaging>=21.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (24.1) +Requirement already satisfied: importlib-metadata>=4.8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (8.5.0) +Requirement already satisfied: pytest>=4.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (8.3.3) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (1.1) +Requirement already satisfied: cython>=3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.0.11) +Requirement already satisfied: setuptools>=67.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (75.1.0) +Requirement already satisfied: filelock in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==7.2.0) (3.16.1) +Requirement already satisfied: zipp>=3.20 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from importlib-metadata>=4.8->Sphinx==7.2.0) (3.20.2) +Requirement already satisfied: MarkupSafe>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Jinja2>=3.0->Sphinx==7.2.0) (3.0.2) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest>=4.6->Sphinx==7.2.0) (2.0.2) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx==7.2.0) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.2.0) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==7.2.0) (0.5.1) +Building wheels for collected packages: Sphinx + Building editable for Sphinx (pyproject.toml): started + Building editable for Sphinx (pyproject.toml): finished with status 'done' + Created wheel for Sphinx: filename=sphinx-7.2.0-py3-none-any.whl size=4406 sha256=ccf96d77c792bf2ef36b427892da68cd3a57d94e365582b99b9aea3a51dd0868 + Stored in directory: /tmp/pip-ephem-wheel-cache-l4g2l94p/wheels/7d/66/67/70d1ee2124ccf21d601c352e25cdca10f611f7c8b3f9ffb9e4 +Successfully built Sphinx +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 7.2.0 + Uninstalling Sphinx-7.2.0: + Successfully uninstalled Sphinx-7.2.0 +Successfully installed Sphinx-7.2.0 +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout 6cb783c0024a873722952a67ebb9f41771c8eb6d tests/test_directive_other.py +Updated 0 paths from 162eea2b8 ++ git apply -v - +Checking patch tests/roots/test-directive-include/baz/baz.rst... +Checking patch tests/roots/test-directive-include/conf.py... +Checking patch tests/roots/test-directive-include/foo.rst... +Checking patch tests/roots/test-directive-include/text.txt... +Checking patch tests/test_directive_other.py... +Applied patch tests/roots/test-directive-include/baz/baz.rst cleanly. +Applied patch tests/roots/test-directive-include/conf.py cleanly. +Applied patch tests/roots/test-directive-include/foo.rst cleanly. +Applied patch tests/roots/test-directive-include/text.txt cleanly. +Applied patch tests/test_directive_other.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/roots/test-directive-include/baz/baz.rst tests/roots/test-directive-include/conf.py tests/roots/test-directive-include/foo.rst tests/test_directive_other.py +py39: commands[0]> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-directive-include/baz/baz.rst tests/roots/test-directive-include/conf.py tests/roots/test-directive-include/foo.rst tests/test_directive_other.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-7.2.0+/7ebcb8ba3, docutils-0.20.1 +base tmp_path: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: pyproject.toml +collected 9 items + +tests/test_directive_other.py .......F. [100%] + +=================================== FAILURES =================================== +________________________ test_include_source_read_event ________________________ + +app = + + @pytest.mark.sphinx(testroot='directive-include') + def test_include_source_read_event(app): + sources_reported = {} +  + def source_read_handler(app, doc, source): + sources_reported[doc] = source[0] +  + app.connect("source-read", source_read_handler) + text = (".. include:: baz/baz.rst\n" + " :start-line: 4\n\n" + ".. include:: text.txt\n" + " :literal: \n") + app.env.find_files(app.config, app.builder) + restructuredtext.parse(app, text, 'index') + assert "index" in sources_reported + assert "text.txt" not in sources_reported # text was included as literal, no rst parsing +> assert "baz/baz" in sources_reported +E AssertionError: assert 'baz/baz' in {'/tmp/pytest-of-root/pytest-0/directive-include/baz/baz.rst': '\nBaz was here.\n', '/tmp/pytest-of-root/pytest-0/dire...is plain text.\n', 'index': '.. include:: baz/baz.rst\n :start-line: 4\n\n.. include:: text.txt\n :literal: \n'} + +tests/test_directive_other.py:169: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-include +# outdir: /tmp/pytest-of-root/pytest-0/directive-include/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +==================================== PASSES ==================================== +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-glob/index.rst:1: WARNING: duplicated entry found in toctree: foo + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/toctree-glob +# outdir: /tmp/pytest-of-root/pytest-0/toctree-glob/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: +/tmp/pytest-of-root/pytest-0/toctree-glob/index.rst:1: WARNING: duplicated entry found in toctree: foo + +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/directive-include +# outdir: /tmp/pytest-of-root/pytest-0/directive-include/_build/html +# status: +Running Sphinx v7.2.0+/7ebcb8ba3 + +# warning: + +============================= slowest 25 durations ============================= +0.29s setup tests/test_directive_other.py::test_toctree +0.03s setup tests/test_directive_other.py::test_reversed_toctree +0.01s call tests/test_directive_other.py::test_toctree +0.01s setup tests/test_directive_other.py::test_include_source_read_event_nested_includes +0.01s setup tests/test_directive_other.py::test_include_source_read_event +0.01s setup tests/test_directive_other.py::test_relative_toctree +0.01s setup tests/test_directive_other.py::test_toctree_glob_and_url +0.01s setup tests/test_directive_other.py::test_toctree_twice +0.01s setup tests/test_directive_other.py::test_toctree_urls_and_titles +0.01s setup tests/test_directive_other.py::test_toctree_glob +0.01s call tests/test_directive_other.py::test_toctree_glob + +(14 durations < 0.005s hidden. Use -vv to show these durations.) +=========================== short test summary info ============================ +PASSED tests/test_directive_other.py::test_toctree +PASSED tests/test_directive_other.py::test_relative_toctree +PASSED tests/test_directive_other.py::test_toctree_urls_and_titles +PASSED tests/test_directive_other.py::test_toctree_glob +PASSED tests/test_directive_other.py::test_toctree_glob_and_url +PASSED tests/test_directive_other.py::test_reversed_toctree +PASSED tests/test_directive_other.py::test_toctree_twice +PASSED tests/test_directive_other.py::test_include_source_read_event_nested_includes +FAILED tests/test_directive_other.py::test_include_source_read_event - AssertionError: assert 'baz/baz' in {'/tmp/pytest-of-root/pytest-0/directiv... +========================= 1 failed, 8 passed in 0.54s ========================== +py39: exit 1 (0.92 seconds) /testbed> python -X dev -X warn_default_encoding -m pytest -rA --durations 25 tests/roots/test-directive-include/baz/baz.rst tests/roots/test-directive-include/conf.py tests/roots/test-directive-include/foo.rst tests/test_directive_other.py pid=112 + py39: FAIL code 1 (0.93=setup[0.01]+cmd[0.92] seconds) + evaluation failed :( (1.03 seconds) ++ : '>>>>> End Test Output' ++ git checkout 6cb783c0024a873722952a67ebb9f41771c8eb6d tests/test_directive_other.py +Updated 1 path from 162eea2b8 diff --git a/verify_logs/sphinx-doc__sphinx-7440_log.txt b/verify_logs/sphinx-doc__sphinx-7440_log.txt new file mode 100644 index 0000000000000000000000000000000000000000..d3486b2ed52f9843359f9972a4db41842ba91d86 --- /dev/null +++ b/verify_logs/sphinx-doc__sphinx-7440_log.txt @@ -0,0 +1,980 @@ ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1= ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''2'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_1='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=2 ++++ CONDA_SHLVL=2 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_1=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''3'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_2='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=3 +++ CONDA_SHLVL=3 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_2=/opt/miniconda3 +++ CONDA_PREFIX_2=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ cd /testbed ++ git config --global --add safe.directory /testbed ++ cd /testbed ++ git status +On branch master +Changes not staged for commit: + (use "git add ..." to update what will be committed) + (use "git restore ..." to discard changes in working directory) + modified: sphinx/domains/std.py + +no changes added to commit (use "git add" and/or "git commit -a") ++ git show +commit 0cfdd60edc815f30a267ee04986dc7a1c2fd0e55 +Author: SWE-bench +Date: Wed Sep 10 16:01:58 2025 +0000 + + SWE-bench + +diff --git a/setup.py b/setup.py +index a427d5493..978e3d8e0 100644 +--- a/setup.py ++++ b/setup.py +@@ -15,22 +15,22 @@ if sys.version_info < (3, 5): + sys.exit(1) + + install_requires = [ +- 'sphinxcontrib-applehelp', +- 'sphinxcontrib-devhelp', ++ 'sphinxcontrib-applehelp<=1.0.7', ++ 'sphinxcontrib-devhelp<=1.0.5', + 'sphinxcontrib-jsmath', +- 'sphinxcontrib-htmlhelp', +- 'sphinxcontrib-serializinghtml', +- 'sphinxcontrib-qthelp', +- 'Jinja2>=2.3', ++ 'sphinxcontrib-htmlhelp<=2.0.4', ++ 'sphinxcontrib-serializinghtml<=1.1.9', ++ 'sphinxcontrib-qthelp<=1.0.6', ++ 'Jinja2<3.0', + 'Pygments>=2.0', + 'docutils>=0.12', + 'snowballstemmer>=1.1', + 'babel>=1.3', +- 'alabaster>=0.7,<0.8', ++ 'alabaster>=0.7,<0.7.12', + 'imagesize', + 'requests>=2.5.0', + 'setuptools', +- 'packaging', ++ 'packaging', 'markupsafe<=2.0.1', + ] + + extras_require = { +diff --git a/tox.ini b/tox.ini +index d9f040544..bf39854b6 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -28,7 +28,7 @@ extras = + setenv = + PYTHONWARNINGS = all,ignore::ImportWarning:importlib._bootstrap_external,ignore::DeprecationWarning:site,ignore::DeprecationWarning:distutils + commands= +- pytest --durations 25 {posargs} ++ pytest -rA --durations 25 {posargs} + + [testenv:flake8] + basepython = python3 ++ git -c core.fileMode=false diff 9bb204dcabe6ba0fc422bf4a45ad0c79c680d90b +diff --git a/setup.py b/setup.py +index a427d5493..978e3d8e0 100644 +--- a/setup.py ++++ b/setup.py +@@ -15,22 +15,22 @@ if sys.version_info < (3, 5): + sys.exit(1) + + install_requires = [ +- 'sphinxcontrib-applehelp', +- 'sphinxcontrib-devhelp', ++ 'sphinxcontrib-applehelp<=1.0.7', ++ 'sphinxcontrib-devhelp<=1.0.5', + 'sphinxcontrib-jsmath', +- 'sphinxcontrib-htmlhelp', +- 'sphinxcontrib-serializinghtml', +- 'sphinxcontrib-qthelp', +- 'Jinja2>=2.3', ++ 'sphinxcontrib-htmlhelp<=2.0.4', ++ 'sphinxcontrib-serializinghtml<=1.1.9', ++ 'sphinxcontrib-qthelp<=1.0.6', ++ 'Jinja2<3.0', + 'Pygments>=2.0', + 'docutils>=0.12', + 'snowballstemmer>=1.1', + 'babel>=1.3', +- 'alabaster>=0.7,<0.8', ++ 'alabaster>=0.7,<0.7.12', + 'imagesize', + 'requests>=2.5.0', + 'setuptools', +- 'packaging', ++ 'packaging', 'markupsafe<=2.0.1', + ] + + extras_require = { +diff --git a/sphinx/domains/std.py b/sphinx/domains/std.py +index d820cfe5c..e86ab5c51 100644 +--- a/sphinx/domains/std.py ++++ b/sphinx/domains/std.py +@@ -305,7 +305,7 @@ def make_glossary_term(env: "BuildEnvironment", textnodes: Iterable[Node], index + term['ids'].append(node_id) + + std = cast(StandardDomain, env.get_domain('std')) +- std.note_object('term', termtext.lower(), node_id, location=term) ++ std.note_object("term", termtext, node_id, location=term) + + # add an index entry too + indexnode = addnodes.index() +diff --git a/tox.ini b/tox.ini +index d9f040544..bf39854b6 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -28,7 +28,7 @@ extras = + setenv = + PYTHONWARNINGS = all,ignore::ImportWarning:importlib._bootstrap_external,ignore::DeprecationWarning:site,ignore::DeprecationWarning:distutils + commands= +- pytest --durations 25 {posargs} ++ pytest -rA --durations 25 {posargs} + + [testenv:flake8] + basepython = python3 ++ source /opt/miniconda3/bin/activate +++ _CONDA_ROOT=/opt/miniconda3 +++ . /opt/miniconda3/etc/profile.d/conda.sh ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ '[' -z x ']' +++ conda activate +++ local cmd=activate +++ case "$cmd" in +++ __conda_activate activate +++ '[' -n '' ']' +++ local ask_conda ++++ PS1='(testbed) ' ++++ __conda_exe shell.posix activate ++++ /opt/miniconda3/bin/conda shell.posix activate +++ ask_conda='PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ eval 'PS1='\''(base) '\'' +export PATH='\''/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3'\'' +export CONDA_SHLVL='\''4'\'' +export CONDA_DEFAULT_ENV='\''base'\'' +export CONDA_PROMPT_MODIFIER='\''(base) '\'' +export CONDA_PREFIX_3='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++++ PS1='(base) ' ++++ export PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ PATH=/opt/miniconda3/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++++ export CONDA_PREFIX=/opt/miniconda3 ++++ CONDA_PREFIX=/opt/miniconda3 ++++ export CONDA_SHLVL=4 ++++ CONDA_SHLVL=4 ++++ export CONDA_DEFAULT_ENV=base ++++ CONDA_DEFAULT_ENV=base ++++ export 'CONDA_PROMPT_MODIFIER=(base) ' ++++ CONDA_PROMPT_MODIFIER='(base) ' ++++ export CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ CONDA_PREFIX_3=/opt/miniconda3/envs/testbed ++++ export CONDA_EXE=/opt/miniconda3/bin/conda ++++ CONDA_EXE=/opt/miniconda3/bin/conda ++++ export _CE_M= ++++ _CE_M= ++++ export _CE_CONDA= ++++ _CE_CONDA= ++++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ __conda_hashr +++ '[' -n '' ']' +++ '[' -n '' ']' +++ hash -r ++ conda activate testbed ++ local cmd=activate ++ case "$cmd" in ++ __conda_activate activate testbed ++ '[' -n '' ']' ++ local ask_conda +++ PS1='(base) ' +++ __conda_exe shell.posix activate testbed +++ /opt/miniconda3/bin/conda shell.posix activate testbed ++ ask_conda='PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' ++ eval 'PS1='\''(testbed) '\'' +export PATH='\''/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'\'' +export CONDA_PREFIX='\''/opt/miniconda3/envs/testbed'\'' +export CONDA_SHLVL='\''5'\'' +export CONDA_DEFAULT_ENV='\''testbed'\'' +export CONDA_PROMPT_MODIFIER='\''(testbed) '\'' +export CONDA_PREFIX_4='\''/opt/miniconda3'\'' +export CONDA_EXE='\''/opt/miniconda3/bin/conda'\'' +export _CE_M='\'''\'' +export _CE_CONDA='\'''\'' +export CONDA_PYTHON_EXE='\''/opt/miniconda3/bin/python'\''' +++ PS1='(testbed) ' +++ export PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ PATH=/opt/miniconda3/envs/testbed/bin:/opt/miniconda3/condabin:/opt/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin +++ export CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ CONDA_PREFIX=/opt/miniconda3/envs/testbed +++ export CONDA_SHLVL=5 +++ CONDA_SHLVL=5 +++ export CONDA_DEFAULT_ENV=testbed +++ CONDA_DEFAULT_ENV=testbed +++ export 'CONDA_PROMPT_MODIFIER=(testbed) ' +++ CONDA_PROMPT_MODIFIER='(testbed) ' +++ export CONDA_PREFIX_4=/opt/miniconda3 +++ CONDA_PREFIX_4=/opt/miniconda3 +++ export CONDA_EXE=/opt/miniconda3/bin/conda +++ CONDA_EXE=/opt/miniconda3/bin/conda +++ export _CE_M= +++ _CE_M= +++ export _CE_CONDA= +++ _CE_CONDA= +++ export CONDA_PYTHON_EXE=/opt/miniconda3/bin/python +++ CONDA_PYTHON_EXE=/opt/miniconda3/bin/python ++ __conda_hashr ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ python -m pip install -e '.[test]' +Obtaining file:///testbed + Preparing metadata (setup.py): started + Preparing metadata (setup.py): finished with status 'done' +Requirement already satisfied: sphinxcontrib-applehelp<=1.0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.0.4) +Requirement already satisfied: sphinxcontrib-devhelp<=1.0.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.0.2) +Requirement already satisfied: sphinxcontrib-jsmath in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.0.1) +Requirement already satisfied: sphinxcontrib-htmlhelp<=2.0.4 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.0.1) +Requirement already satisfied: sphinxcontrib-serializinghtml<=1.1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.1.5) +Requirement already satisfied: sphinxcontrib-qthelp<=1.0.6 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.0.3) +Requirement already satisfied: Jinja2<3.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.11.3) +Requirement already satisfied: Pygments>=2.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.18.0) +Requirement already satisfied: docutils>=0.12 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (0.21.2) +Requirement already satisfied: snowballstemmer>=1.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.2.0) +Requirement already satisfied: babel>=1.3 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.16.0) +Requirement already satisfied: alabaster<0.7.12,>=0.7 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (0.7.11) +Requirement already satisfied: imagesize in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.4.1) +Requirement already satisfied: requests>=2.5.0 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.32.3) +Requirement already satisfied: setuptools in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (75.1.0) +Requirement already satisfied: packaging in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (24.1) +Requirement already satisfied: markupsafe<=2.0.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (2.0.1) +Requirement already satisfied: pytest in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (8.3.3) +Requirement already satisfied: pytest-cov in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (5.0.0) +Requirement already satisfied: html5lib in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.1) +Requirement already satisfied: typed_ast in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (1.5.5) +Requirement already satisfied: cython in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from Sphinx==3.0.1.dev20260707) (3.0.11) +Requirement already satisfied: charset-normalizer<4,>=2 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==3.0.1.dev20260707) (3.4.0) +Requirement already satisfied: idna<4,>=2.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==3.0.1.dev20260707) (3.10) +Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==3.0.1.dev20260707) (2.2.3) +Requirement already satisfied: certifi>=2017.4.17 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from requests>=2.5.0->Sphinx==3.0.1.dev20260707) (2024.8.30) +Requirement already satisfied: six>=1.9 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==3.0.1.dev20260707) (1.16.0) +Requirement already satisfied: webencodings in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from html5lib->Sphinx==3.0.1.dev20260707) (0.5.1) +Requirement already satisfied: iniconfig in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==3.0.1.dev20260707) (2.0.0) +Requirement already satisfied: pluggy<2,>=1.5 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==3.0.1.dev20260707) (1.5.0) +Requirement already satisfied: exceptiongroup>=1.0.0rc8 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==3.0.1.dev20260707) (1.2.2) +Requirement already satisfied: tomli>=1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from pytest->Sphinx==3.0.1.dev20260707) (2.0.2) +Requirement already satisfied: coverage>=5.2.1 in /opt/miniconda3/envs/testbed/lib/python3.9/site-packages (from coverage[toml]>=5.2.1->pytest-cov->Sphinx==3.0.1.dev20260707) (7.6.4) +Installing collected packages: Sphinx + Attempting uninstall: Sphinx + Found existing installation: Sphinx 3.0.1.dev20250910 + Uninstalling Sphinx-3.0.1.dev20250910: + Successfully uninstalled Sphinx-3.0.1.dev20250910 + DEPRECATION: Legacy editable install of Sphinx[test]==3.0.1.dev20260707 from file:///testbed (setup.py develop) is deprecated. pip 25.0 will enforce this behaviour change. A possible replacement is to add a pyproject.toml or enable --use-pep517, and use setuptools >= 64. If the resulting installation is not behaving as expected, try using --config-settings editable_mode=compat. Please consult the setuptools documentation for more information. Discussion can be found at https://github.com/pypa/pip/issues/11457 + Running setup.py develop for Sphinx +Successfully installed Sphinx +WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. ++ git checkout 9bb204dcabe6ba0fc422bf4a45ad0c79c680d90b tests/test_domain_std.py +Updated 0 paths from e6ea19c41 ++ git apply -v - +Checking patch tests/test_domain_std.py... +Applied patch tests/test_domain_std.py cleanly. ++ : '>>>>> Start Test Output' ++ tox --current-env -epy39 -v -- tests/test_domain_std.py +py39: commands[0]> pytest -rA --durations 25 tests/test_domain_std.py +============================= test session starts ============================== +platform linux -- Python 3.9.20, pytest-8.3.3, pluggy-1.5.0 +cachedir: .tox/py39/.pytest_cache +libraries: Sphinx-3.0.1+/0cfdd60ed, docutils-0.21.2 +base tempdir: /tmp/pytest-of-root/pytest-0 +rootdir: /testbed +configfile: setup.cfg +plugins: cov-5.0.0 +collected 14 items + +tests/test_domain_std.py ............F. [100%] + +=================================== FAILURES =================================== +_____________________________ test_productionlist ______________________________ + +app = +status = <_io.StringIO object at 0x7f6a5ed08c10> +warning = <_io.StringIO object at 0x7f6a5ed08ca0> + + @pytest.mark.skipif(docutils.__version_info__ < (0, 13), + reason='docutils-0.13 or above is required') + @pytest.mark.sphinx(testroot='productionlist') + def test_productionlist(app, status, warning): + app.builder.build_all() + + warnings = warning.getvalue().split("\n"); +> assert len(warnings) == 2 +E assert 3 == 2 +E + where 3 = len(["\x1b[91mWARNING: while setting up extension sphinx.addnodes: node class 'meta' is already registered, its visitors w...st-0/productionlist/Dup2.rst:4: WARNING: duplicate token description of Dup, other instance in Dup1\x1b[39;49;00m', '']) + +tests/test_domain_std.py:330: AssertionError +--------------------------- Captured stdout teardown --------------------------- +# testroot: root +# builder: html +# srcdir: /tmp/pytest-of-root/pytest-0/productionlist +# outdir: /tmp/pytest-of-root/pytest-0/productionlist/_build/html +# status: +Running Sphinx v3.0.1+/0cfdd60ed +building [html]: all source files +updating environment: [new config] 8 added, 0 changed, 0 removed +reading sources... [ 12%] Bare reading sources... [ 25%] Dup1 reading sources... [ 37%] Dup2 reading sources... [ 50%] LineContinuation reading sources... [ 62%] P1 reading sources... [ 75%] P2 reading sources... [ 87%] firstLineRule reading sources... [100%] index +looking for now-outdated files... none found +pickling environment... done +checking consistency... done +preparing documents... done +writing output... [ 12%] Bare writing output... [ 25%] Dup1 writing output... [ 37%] Dup2 writing output... [ 50%] LineContinuation writing output... [ 62%] P1 writing output... [ 75%] P2 writing output... [ 87%] firstLineRule writing output... [100%] index +generating indices...  genindexdone +writing additional pages...  searchdone +copying static files... ... done +copying extra files... done +dumping search index in English (code: en)... done +dumping object inventory... done + +# warning: +WARNING: while setting up extension sphinx.addnodes: node class 'meta' is already registered, its visitors will be overridden +/tmp/pytest-of-root/pytest-0/productionlist/Dup2.rst:4: WARNING: duplicate token description of Dup, other instance in Dup1 + +=============================== warnings summary =============================== +sphinx/util/docutils.py:45 + /testbed/sphinx/util/docutils.py:45: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. + __version_info__ = tuple(LooseVersion(docutils.__version__).version) + +sphinx/registry.py:22 + /testbed/sphinx/registry.py:22: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html + from pkg_resources import iter_entry_points + +../opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pkg_resources/__init__.py:3154 +../opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pkg_resources/__init__.py:3154 +../opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pkg_resources/__init__.py:3154 +../opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pkg_resources/__init__.py:3154 + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/pkg_resources/__init__.py:3154: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`. + Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages + declare_namespace(pkg) + +sphinx/directives/patches.py:15 + /testbed/sphinx/directives/patches.py:15: DeprecationWarning: The `docutils.parsers.rst.directive.html` module will be removed in Docutils 2.0. Since Docutils 0.18, the "Meta" node is defined in `docutils.parsers.rst.directives.misc`. + from docutils.parsers.rst.directives import images, html, tables + +tests/test_domain_std.py: 18 warnings + /testbed/sphinx/util/nodes.py:348: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for img in node.traverse(nodes.image): + +tests/test_domain_std.py: 18 warnings + /testbed/sphinx/util/nodes.py:350: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for raw in node.traverse(nodes.raw): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:210: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(): # type: Node + +tests/test_domain_std.py: 20 warnings + /testbed/sphinx/util/nodes.py:153: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for classifier in reversed(list(node.parent.traverse(nodes.classifier))): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/i18n.py:88: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.translatable): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:110: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for ref in self.document.traverse(nodes.substitution_reference): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:131: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.target): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:150: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.block_quote): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:175: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.Element): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:222: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.index): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/references.py:30: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.substitution_definition): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:189: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.section): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:279: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.doctest_block): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/domains/citation.py:117: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.citation): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/domains/citation.py:136: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.citation_reference): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/builders/latex/transforms.py:37: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(matcher): # type: nodes.Element + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:291: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(matcher): # type: Element + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/util/compat.py:44: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.index): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/domains/index.py:52: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in document.traverse(addnodes.index): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/domains/math.py:85: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + self.data['has_equations'][docname] = any(document.traverse(math_node)) + +tests/test_domain_std.py: 13 warnings + /testbed/sphinx/ext/todo.py:98: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for todo in document.traverse(todo_node): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/environment/collectors/asset.py:47: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in doctree.traverse(nodes.image): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/environment/collectors/asset.py:124: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in doctree.traverse(addnodes.download_reference): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/environment/collectors/title.py:46: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in doctree.traverse(nodes.section): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:301: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.system_message): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/__init__.py:384: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.manpage): + +tests/test_domain_std.py: 21 warnings + /testbed/sphinx/transforms/i18n.py:484: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for inline in self.document.traverse(matcher): # type: nodes.inline + +tests/test_domain_std.py::test_glossary_conflicted_labels + /testbed/sphinx/domains/std.py:739: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + toctree = next(iter(node.traverse(addnodes.toctree)), None) + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/domains/std.py:448: DeprecationWarning: nodes.Text: initialization argument "rawsource" is ignored and will be removed in Docutils 2.0. + retnodes.append(nodes.Text(txt, txt)) + +tests/test_domain_std.py: 11 warnings + /testbed/sphinx/domains/std.py:455: DeprecationWarning: nodes.Text: initialization argument "rawsource" is ignored and will be removed in Docutils 2.0. + retnodes.append(nodes.Text(text[pos:], text[pos:])) + +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/builders/html/__init__.py:415: DeprecationWarning: The frontend.OptionParser class will be replaced by a subclass of argparse.ArgumentParser in Docutils 0.21 or later. + self.docsettings = OptionParser( + +tests/test_domain_std.py: 72 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/optparse.py:1000: DeprecationWarning: The frontend.Option class will be removed in Docutils 0.21 or later. + option = self.option_class(*args, **kwargs) + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/domains/cpp.py:6895: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(AliasNode): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/transforms/post_transforms/__init__.py:71: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.pending_xref): + +tests/test_domain_std.py: 93 warnings + /testbed/sphinx/util/nodes.py:596: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in document.traverse(addnodes.only): + +tests/test_domain_std.py: 16 warnings + /testbed/sphinx/transforms/post_transforms/images.py:36: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.image): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/transforms/post_transforms/__init__.py:214: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.desc_sig_element): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/builders/latex/transforms.py:595: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(nodes.title): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/builders/latex/transforms.py:597: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for i, index in enumerate(node.traverse(addnodes.index)): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/transforms/post_transforms/code.py:44: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in self.document.traverse(addnodes.highlightlang): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/transforms/post_transforms/code.py:99: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for lbnode in self.document.traverse(nodes.literal_block): # type: nodes.literal_block + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/transforms/post_transforms/code.py:103: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for dbnode in self.document.traverse(nodes.doctest_block): # type: nodes.doctest_block + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/environment/__init__.py:541: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for toctreenode in doctree.traverse(addnodes.toctree): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/builders/__init__.py:182: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in doctree.traverse(nodes.image): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/builders/html/__init__.py:827: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in doctree.traverse(nodes.image): + +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist +tests/test_domain_std.py::test_productionlist + /testbed/sphinx/environment/adapters/toctree.py:313: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for node in toc.traverse(nodes.reference): + +tests/test_domain_std.py: 10 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/alabaster/layout.html:114: DeprecationWarning: 'soft_unicode' has been renamed to 'soft_str'. The old name will be removed in MarkupSafe 2.1. + _gaq.push(['_setAllowLinker', true]); + +tests/test_domain_std.py: 10 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/alabaster/about.html:70: DeprecationWarning: 'soft_unicode' has been renamed to 'soft_str'. The old name will be removed in MarkupSafe 2.1. + +tests/test_domain_std.py: 10 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/alabaster/about.html:99: DeprecationWarning: 'soft_unicode' has been renamed to 'soft_str'. The old name will be removed in MarkupSafe 2.1. + +tests/test_domain_std.py: 10 warnings + /testbed/sphinx/environment/adapters/toctree.py:327: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for toctreenode in doctree.traverse(addnodes.toctree): + +tests/test_domain_std.py: 77 warnings + /testbed/sphinx/environment/adapters/toctree.py:204: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for subtocnode in toc.traverse(addnodes.toctree): + +tests/test_domain_std.py: 11 warnings + /testbed/sphinx/environment/adapters/toctree.py:262: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). + for refnode in newnode.traverse(nodes.reference): + +tests/test_domain_std.py: 10 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/alabaster/layout.html:215: DeprecationWarning: 'soft_unicode' has been renamed to 'soft_str'. The old name will be removed in MarkupSafe 2.1. + +tests/test_domain_std.py: 10 warnings + /opt/miniconda3/envs/testbed/lib/python3.9/site-packages/alabaster/layout.html:238: DeprecationWarning: 'soft_unicode' has been renamed to 'soft_str'. The old name will be removed in MarkupSafe 2.1. + +tests/test_domain_std.py::test_productionlist +