diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__f732f1a70bbd.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__f732f1a70bbd.json index c193bfff60408c019ca0b07e237b8c95ede83130..4d93af88fb9b0e5284903ee86c6919f84d811e87 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__f732f1a70bbd.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__f732f1a70bbd.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:13+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:48+0200", "started_epoch": 1787718408.4165065 + }, + { + "attempt_id": "ab46c667c815", + "duration_s": 0.9424581527709961, + "error": null, + "finished_at": "2026-08-28T15:09:54+0200", + "finished_epoch": 1787922594.0977137, + "result": "completed", + "started_at": "2026-08-28T15:09:53+0200", + "started_epoch": 1787922593.1552556 + }, + { + "attempt_id": "db7093ab2ca0", + "duration_s": 0.33565807342529297, + "error": null, + "finished_at": "2026-08-28T15:17:29+0200", + "finished_epoch": 1787923049.336083, + "result": "completed", + "started_at": "2026-08-28T15:17:28+0200", + "started_epoch": 1787923049.0004249 + }, + { + "attempt_id": "4be71f358b1c", + "duration_s": 0.3236813545227051, + "error": null, + "finished_at": "2026-08-28T15:24:47+0200", + "finished_epoch": 1787923487.5588064, + "result": "completed", + "started_at": "2026-08-28T15:24:47+0200", + "started_epoch": 1787923487.235125 + }, + { + "attempt_id": "f3b623eb5546", + "duration_s": 0.3667275905609131, + "error": null, + "finished_at": "2026-08-28T15:32:45+0200", + "finished_epoch": 1787923965.6121423, + "result": "completed", + "started_at": "2026-08-28T15:32:45+0200", + "started_epoch": 1787923965.2454147 + }, + { + "attempt_id": "36e7fcef540c", + "duration_s": 0.3363332748413086, + "error": null, + "finished_at": "2026-08-28T15:40:13+0200", + "finished_epoch": 1787924413.0422516, + "result": "completed", + "started_at": "2026-08-28T15:40:12+0200", + "started_epoch": 1787924412.7059183 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 1080632, + "bytes": 27696, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5" }, "coords_viz": { - "bytes": 238627, + "bytes": 182554, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:13+0200" } diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__fd5bb0974865.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__fd5bb0974865.json new file mode 100644 index 0000000000000000000000000000000000000000..0250c79cf7966e442f3d199cae08630abe291c5a --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95__fd5bb0974865.json @@ -0,0 +1,127 @@ +{ + "meta": { + "dimensions": [ + 36001, + 41233 + ], + "level_count": 3, + "mag": 20, + "mpp": 0.5015 + }, + "resume": { + "last_status": "completed", + "last_task": "slide_features:titan", + "last_updated_at": "2026-08-28T22:56:30+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.svs", + "ext": ".svs", + "id": "TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.svs__fd5bb0974865", + "name": "TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "conch_v15": "completed" + }, + "segmentation": "skipped (already_segmented)", + "slide_features": { + "titan": "completed" + } + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 66904, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:conch_v15": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "4fd07a035782", + "duration_s": 24.529561042785645, + "error": null, + "finished_at": "2026-08-28T22:47:15+0200", + "finished_epoch": 1787950035.5482223, + "result": "completed", + "started_at": "2026-08-28T22:46:51+0200", + "started_epoch": 1787950011.0186613 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 66904, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95_patches.h5" + }, + "features_path": { + "bytes": 2900392, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 361416, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + }, + "slide_features:titan": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "dd48eda308cb", + "duration_s": 0.19696331024169922, + "error": null, + "finished_at": "2026-08-28T22:56:30+0200", + "finished_epoch": 1787950590.1850967, + "result": "completed", + "started_at": "2026-08-28T22:56:29+0200", + "started_epoch": 1787950589.9881334 + } + ], + "message": "Slide features extracted.", + "outputs": { + "patch_features_path": { + "bytes": 2900392, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5" + }, + "slide_features_path": { + "bytes": 101888, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1751-01Z-00-DX1.9be1807e-2cd5-469d-a4ab-6730aa26fc95.h5" + } + }, + "reason": null, + "status": "completed" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:56:30+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__034b5acb0813.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__034b5acb0813.json index 2384fd0dfd2f10170ad8a6a287b41f5e411c9245..32c917638589b1fcb8932f413277cdcd4f07144a 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__034b5acb0813.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__034b5acb0813.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:13+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:49+0200", "started_epoch": 1787718409.1144753 + }, + { + "attempt_id": "74ba2cd55e7d", + "duration_s": 0.40500378608703613, + "error": null, + "finished_at": "2026-08-28T15:09:54+0200", + "finished_epoch": 1787922594.5582564, + "result": "completed", + "started_at": "2026-08-28T15:09:54+0200", + "started_epoch": 1787922594.1532526 + }, + { + "attempt_id": "cc7a16473968", + "duration_s": 0.28021907806396484, + "error": null, + "finished_at": "2026-08-28T15:17:29+0200", + "finished_epoch": 1787923049.65721, + "result": "completed", + "started_at": "2026-08-28T15:17:29+0200", + "started_epoch": 1787923049.376991 + }, + { + "attempt_id": "faeb18129581", + "duration_s": 0.2641482353210449, + "error": null, + "finished_at": "2026-08-28T15:24:47+0200", + "finished_epoch": 1787923487.860228, + "result": "completed", + "started_at": "2026-08-28T15:24:47+0200", + "started_epoch": 1787923487.5960798 + }, + { + "attempt_id": "2bf02f7e7538", + "duration_s": 0.29718565940856934, + "error": null, + "finished_at": "2026-08-28T15:32:45+0200", + "finished_epoch": 1787923965.9554145, + "result": "completed", + "started_at": "2026-08-28T15:32:45+0200", + "started_epoch": 1787923965.6582289 + }, + { + "attempt_id": "48f6634bc2fe", + "duration_s": 0.2848505973815918, + "error": null, + "finished_at": "2026-08-28T15:40:13+0200", + "finished_epoch": 1787924413.370417, + "result": "completed", + "started_at": "2026-08-28T15:40:13+0200", + "started_epoch": 1787924413.0855665 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 586640, + "bytes": 20768, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5" }, "coords_viz": { - "bytes": 235883, + "bytes": 191226, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:13+0200" } diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__04202a236ad6.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__04202a236ad6.json new file mode 100644 index 0000000000000000000000000000000000000000..76c4b92476c7dd4729e6f734f746affd286f4cd4 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__04202a236ad6.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:keep", + "last_updated_at": "2026-08-28T22:06:56+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs", + "ext": ".svs", + "id": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs__04202a236ad6", + "name": "TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "keep": "completed" + }, + "segmentation": "skipped (already_segmented)" + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 42256, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:keep": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "931ec4889b2a", + "duration_s": 11.775075912475586, + "error": null, + "finished_at": "2026-08-28T22:06:56+0200", + "finished_epoch": 1787947616.6407537, + "result": "completed", + "started_at": "2026-08-28T22:06:44+0200", + "started_epoch": 1787947604.8656778 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 42256, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2_patches.h5" + }, + "features_path": { + "bytes": 1640920, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 375711, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:06:56+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__4eeb5ddbd9e1.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__4eeb5ddbd9e1.json new file mode 100644 index 0000000000000000000000000000000000000000..bc2f6d18861d0e903fc3cd20925a785a991f1445 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2__4eeb5ddbd9e1.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:conch_v1", + "last_updated_at": "2026-08-28T23:12:48+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.svs", + "ext": ".svs", + "id": 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+ "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1752-01Z-00-DX1.e24f30ab-133e-4a77-9df7-c136beea14a2.h5" + } + }, + "reason": null, + "status": "completed" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:56:30+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__005dc89bb264.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__005dc89bb264.json index 7fdd15844c4a53845fcc01bbb886ed55899644fa..fbe414b35c6fffd8de5800eb45da6dd4477443b4 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__005dc89bb264.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57__005dc89bb264.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:13+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:49+0200", "started_epoch": 1787718409.6314194 + }, + { + "attempt_id": "2a5fc277daa8", + "duration_s": 0.4911153316497803, + "error": null, + "finished_at": "2026-08-28T15:09:55+0200", + "finished_epoch": 1787922595.0951786, + "result": "completed", + "started_at": "2026-08-28T15:09:54+0200", + "started_epoch": 1787922594.6040633 + }, + { + "attempt_id": "c3889bfaa2c9", + "duration_s": 0.3100728988647461, + "error": null, + "finished_at": "2026-08-28T15:17:29+0200", + "finished_epoch": 1787923049.995755, + "result": "completed", + "started_at": "2026-08-28T15:17:29+0200", + "started_epoch": 1787923049.685682 + }, + { + "attempt_id": "597e9460ee41", + "duration_s": 0.299776554107666, + "error": null, + "finished_at": "2026-08-28T15:24:48+0200", + "finished_epoch": 1787923488.1812706, + "result": "completed", + "started_at": "2026-08-28T15:24:47+0200", + "started_epoch": 1787923487.881494 + }, + { + "attempt_id": "2bffa40ffe80", + "duration_s": 0.31523609161376953, + "error": null, + "finished_at": "2026-08-28T15:32:46+0200", + "finished_epoch": 1787923966.3002484, + "result": "completed", + "started_at": "2026-08-28T15:32:45+0200", + "started_epoch": 1787923965.9850123 + }, + { + "attempt_id": "b3c905af5232", + "duration_s": 0.32103633880615234, + "error": null, + "finished_at": "2026-08-28T15:40:13+0200", + "finished_epoch": 1787924413.7209759, + "result": "completed", + "started_at": "2026-08-28T15:40:13+0200", + "started_epoch": 1787924413.3999395 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 306040, + "bytes": 17800, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57_patches.h5" }, "coords_viz": { - "bytes": 134006, + "bytes": 111938, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1755-01Z-00-DX1.913db772-e917-4ae0-a2cc-281e63507f57.jpg" + "path": 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"started_at": "2026-08-28T22:56:30+0200", + "started_epoch": 1787950590.4557006 + } + ], + "message": "Slide features extracted.", + "outputs": { + "patch_features_path": { + "bytes": 1917624, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5" + }, + "slide_features_path": { + "bytes": 84712, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.h5" + } + }, + "reason": null, + "status": "completed" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:56:30+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__6961f7d408b9.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__6961f7d408b9.json index e0b0b6408db7992e98ba1ff583e566c948b80674..dcba38f5ed54169c7bfb7091dfa9b72bceeca485 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__6961f7d408b9.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__6961f7d408b9.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:14+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:50+0200", "started_epoch": 1787718410.12596 + }, + { + "attempt_id": "6bccc15033a8", + "duration_s": 0.451279878616333, + "error": null, + "finished_at": "2026-08-28T15:09:55+0200", + "finished_epoch": 1787922595.5914447, + "result": "completed", + "started_at": "2026-08-28T15:09:55+0200", + "started_epoch": 1787922595.1401649 + }, + { + "attempt_id": "f14cb84a169f", + "duration_s": 0.32888007164001465, + "error": null, + "finished_at": "2026-08-28T15:17:30+0200", + "finished_epoch": 1787923050.3557389, + "result": "completed", + "started_at": "2026-08-28T15:17:30+0200", + "started_epoch": 1787923050.0268588 + }, + { + "attempt_id": "13b3511a8294", + "duration_s": 0.2806994915008545, + "error": null, + "finished_at": "2026-08-28T15:24:48+0200", + "finished_epoch": 1787923488.4921744, + "result": "completed", + "started_at": "2026-08-28T15:24:48+0200", + "started_epoch": 1787923488.211475 + }, + { + "attempt_id": "b0883e676ddc", + "duration_s": 0.31593775749206543, + "error": null, + "finished_at": "2026-08-28T15:32:46+0200", + "finished_epoch": 1787923966.650199, + "result": "completed", + "started_at": "2026-08-28T15:32:46+0200", + "started_epoch": 1787923966.3342612 + }, + { + "attempt_id": "fc72643effec", + "duration_s": 0.29605984687805176, + "error": null, + "finished_at": "2026-08-28T15:40:14+0200", + "finished_epoch": 1787924414.0594487, + "result": "completed", + "started_at": "2026-08-28T15:40:13+0200", + "started_epoch": 1787924413.7633889 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 716200, + "bytes": 20976, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5" }, "coords_viz": { - "bytes": 204330, + "bytes": 165160, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:14+0200" } diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__8c866907160c.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__8c866907160c.json new file mode 100644 index 0000000000000000000000000000000000000000..323ffbd9d189a674db7e85bbdde3707b8a675b31 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__8c866907160c.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:conch_v1", + "last_updated_at": "2026-08-28T22:05:23+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs", + "ext": ".svs", + "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__8c866907160c", + "name": 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"reason": "already_generated", + "status": "skipped" + }, + "patch_features:conch_v1": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "04c58f241013", + "duration_s": 46.2578444480896, + "error": null, + "finished_at": "2026-08-28T23:14:08+0200", + "finished_epoch": 1787951648.602339, + "result": "completed", + "started_at": "2026-08-28T23:13:22+0200", + "started_epoch": 1787951602.3444946 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 11320, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_2048px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5" + }, + "features_path": { + "bytes": 115976, + "exists": true, + "path": 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b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__cf6e21b03b32.json new file mode 100644 index 0000000000000000000000000000000000000000..8dd10cbbf09acb91ea549d6fd30e14450c47fe84 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__cf6e21b03b32.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:keep", + "last_updated_at": "2026-08-28T23:21:53+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579313/wsi-cache-15579313/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs", + "ext": ".svs", + "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__cf6e21b03b32", + "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped 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"reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T23:21:53+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__f0f56c11811e.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__f0f56c11811e.json new file mode 100644 index 0000000000000000000000000000000000000000..49955fdc367d41b9b9e64bf205185dfb920b2843 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75__f0f56c11811e.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:keep", + "last_updated_at": "2026-08-28T22:07:19+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs", + "ext": ".svs", + "id": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.svs__f0f56c11811e", + "name": "TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "keep": "completed" + }, + "segmentation": "skipped (already_segmented)" + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 49536, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:keep": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "4952f1f7e365", + "duration_s": 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skipping.", + "outputs": { + "contour_jpg": { + "bytes": 343570, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1757-01Z-00-DX1.ef0fd824-d5cb-484e-8296-4064cf183f75.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:07:19+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__185d2629e39a.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__185d2629e39a.json new file mode 100644 index 0000000000000000000000000000000000000000..b14b72c9271084676d1d119c4190f9fe53420da1 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__185d2629e39a.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:conch_v1", + "last_updated_at": "2026-08-28T22:05:49+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579307/wsi-cache-15579307/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs", + "ext": ".svs", + "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__185d2629e39a", + "name": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "conch_v1": "completed" + }, + "segmentation": "skipped (already_segmented)" + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:conch_v1": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "e2ffa53ea50c", + "duration_s": 26.352232694625854, + "error": null, + "finished_at": "2026-08-28T22:05:49+0200", + "finished_epoch": 1787947549.7705133, + "result": "completed", + "started_at": "2026-08-28T22:05:23+0200", + "started_epoch": 1787947523.4182806 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5" + }, + "features_path": { + "bytes": 232136, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/10x_1024px_0px_overlap/features_conch_v1/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 84897, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:05:49+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__3a57583d2733.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__3a57583d2733.json index b73006c5a1420bd2f589ef4efe070a3e66747588..fdcc04ef34391518970d16a04369224d0ba19b6f 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__3a57583d2733.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__3a57583d2733.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:14+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:50+0200", "started_epoch": 1787718410.7023425 + }, + { + "attempt_id": "5fe5cc27ba5c", + "duration_s": 0.386843204498291, + "error": null, + "finished_at": "2026-08-28T15:09:56+0200", + "finished_epoch": 1787922596.0229561, + "result": "completed", + "started_at": "2026-08-28T15:09:55+0200", + "started_epoch": 1787922595.636113 + }, + { + "attempt_id": "c5fec3996213", + "duration_s": 0.27552199363708496, + "error": null, + "finished_at": "2026-08-28T15:17:30+0200", + "finished_epoch": 1787923050.661669, + "result": "completed", + "started_at": "2026-08-28T15:17:30+0200", + "started_epoch": 1787923050.386147 + }, + { + "attempt_id": "2cfa9bf9ea4c", + "duration_s": 0.2670290470123291, + "error": null, + "finished_at": "2026-08-28T15:24:48+0200", + "finished_epoch": 1787923488.7866726, + "result": "completed", + "started_at": "2026-08-28T15:24:48+0200", + "started_epoch": 1787923488.5196435 + }, + { + "attempt_id": "d3387748a9e7", + "duration_s": 0.29857444763183594, + "error": null, + "finished_at": "2026-08-28T15:32:46+0200", + "finished_epoch": 1787923966.9811249, + "result": "completed", + "started_at": "2026-08-28T15:32:46+0200", + "started_epoch": 1787923966.6825504 + }, + { + "attempt_id": "9c87bc68b26e", + "duration_s": 0.2758660316467285, + "error": null, + "finished_at": "2026-08-28T15:40:14+0200", + "finished_epoch": 1787924414.3679402, + "result": "completed", + "started_at": "2026-08-28T15:40:14+0200", + "started_epoch": 1787924414.0920742 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 347672, + "bytes": 17800, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254_patches.h5" }, "coords_viz": { - "bytes": 53042, + "bytes": 49411, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:14+0200" } diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__59807d2b10aa.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__59807d2b10aa.json new file mode 100644 index 0000000000000000000000000000000000000000..958e81314e223328a17794c32cfa5273fa6f7497 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254__59807d2b10aa.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:keep", + "last_updated_at": "2026-08-28T22:07:30+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs", + "ext": ".svs", + "id": "TCGA-28-1760-01Z-00-DX1.c18f0389-2817-4b4b-867b-b392ad492254.svs__59807d2b10aa", + "name": 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b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2105d592650c.json new file mode 100644 index 0000000000000000000000000000000000000000..b86bed73ed0b58b1e0301a2dc4ec6c889e3365d4 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2105d592650c.json @@ -0,0 +1,127 @@ +{ + "meta": { + "dimensions": [ + 132375, + 47141 + ], + "level_count": 4, + "mag": 40, + "mpp": 0.252 + }, + "resume": { + "last_status": "completed", + "last_task": "slide_features:titan", + "last_updated_at": "2026-08-28T22:56:30+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs", + "ext": ".svs", + "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__2105d592650c", + "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "conch_v15": "completed" + }, + "segmentation": "skipped (already_segmented)", + "slide_features": { + "titan": "completed" + } + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 21152, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:conch_v15": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "6ce9cde25265", + "duration_s": 33.43378281593323, + "error": null, + "finished_at": "2026-08-28T22:48:45+0200", + "finished_epoch": 1787950125.6075478, + "result": "completed", + "started_at": "2026-08-28T22:48:12+0200", + "started_epoch": 1787950092.173765 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 21152, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5" + }, + "features_path": { + "bytes": 565784, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 126975, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + }, + "slide_features:titan": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "390d5931da97", + "duration_s": 0.06760191917419434, + "error": null, + "finished_at": "2026-08-28T22:56:30+0200", + "finished_epoch": 1787950590.7485595, + "result": "completed", + "started_at": "2026-08-28T22:56:30+0200", + "started_epoch": 1787950590.6809576 + } + ], + "message": "Slide features extracted.", + "outputs": { + "patch_features_path": { + "bytes": 565784, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5" + }, + "slide_features_path": { + "bytes": 55592, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.h5" + } + }, + "reason": null, + "status": "completed" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:56:30+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2e1acbaa4366.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2e1acbaa4366.json index f5f5f9e3638508c56f0208230bae7598b49f4f51..a869d4341963a8d6be509225f7b64c9c8c689a78 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2e1acbaa4366.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__2e1acbaa4366.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:14+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:51+0200", "started_epoch": 1787718411.1668448 + }, + { + "attempt_id": "3c0ba04ac66c", + "duration_s": 0.2592926025390625, + "error": null, + "finished_at": "2026-08-28T15:09:56+0200", + "finished_epoch": 1787922596.3276966, + "result": "completed", + "started_at": "2026-08-28T15:09:56+0200", + "started_epoch": 1787922596.068404 + }, + { + "attempt_id": "0ed54c0939d3", + "duration_s": 0.19675850868225098, + "error": null, + "finished_at": "2026-08-28T15:17:30+0200", + "finished_epoch": 1787923050.891436, + "result": "completed", + "started_at": "2026-08-28T15:17:30+0200", + "started_epoch": 1787923050.6946776 + }, + { + "attempt_id": "67c36d8e944c", + "duration_s": 0.1700432300567627, + "error": null, + "finished_at": "2026-08-28T15:24:48+0200", + "finished_epoch": 1787923488.9872344, + "result": "completed", + "started_at": "2026-08-28T15:24:48+0200", + "started_epoch": 1787923488.8171911 + }, + { + "attempt_id": "5d5b2945e679", + "duration_s": 0.22095489501953125, + "error": null, + "finished_at": "2026-08-28T15:32:47+0200", + "finished_epoch": 1787923967.2387128, + "result": "completed", + "started_at": "2026-08-28T15:32:47+0200", + "started_epoch": 1787923967.017758 + }, + { + "attempt_id": "60410ad74632", + "duration_s": 0.18022799491882324, + "error": null, + "finished_at": "2026-08-28T15:40:14+0200", + "finished_epoch": 1787924414.58445, + "result": "completed", + "started_at": "2026-08-28T15:40:14+0200", + "started_epoch": 1787924414.404222 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 123272, + "bytes": 17800, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9_patches.h5" }, "coords_viz": { - "bytes": 56880, + "bytes": 61623, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:14+0200" } diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__348e885938d4.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__348e885938d4.json new file mode 100644 index 0000000000000000000000000000000000000000..932485ecdcfafcd660de20da3ced36b3b4c6eb28 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9__348e885938d4.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:conch_v1", + "last_updated_at": "2026-08-28T23:15:28+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579308/wsi-cache-15579308/gpu_0/batch_52/TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs", + "ext": ".svs", + "id": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9.svs__348e885938d4", + "name": "TCGA-41-2571-01Z-00-DX1.d0a404d6-6cd0-42ab-b7c7-a9c35b9efbb9", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "conch_v1": "completed" + }, + "segmentation": "skipped (already_segmented)" + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 11112, + "exists": true, + "path": 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"exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/features_keep/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 115496, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T23:22:49+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__77760852f6cb.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__77760852f6cb.json new file mode 100644 index 0000000000000000000000000000000000000000..5757be25c69c900ade2d5558f6d6086b8a4e9602 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__77760852f6cb.json @@ -0,0 +1,127 @@ +{ + "meta": { + "dimensions": [ + 24940, + 67806 + ], + "level_count": 4, + "mag": 40, + "mpp": 0.252 + }, + "resume": { + "last_status": "completed", + "last_task": "slide_features:titan", + "last_updated_at": "2026-08-28T22:56:30+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579309/wsi-cache-15579309/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs", + "ext": ".svs", + "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__77760852f6cb", + "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "conch_v15": "completed" + }, + "segmentation": "skipped (already_segmented)", + "slide_features": { + "titan": "completed" + } + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:conch_v15": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "7f62f4f55b14", + "duration_s": 36.267043590545654, + "error": null, + "finished_at": "2026-08-28T22:49:21+0200", + "finished_epoch": 1787950161.9041362, + "result": "completed", + "started_at": "2026-08-28T22:48:45+0200", + "started_epoch": 1787950125.6370926 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" + }, + "features_path": { + "bytes": 366280, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 115496, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + }, + "slide_features:titan": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "ab5231ee55ef", + "duration_s": 0.06445145606994629, + "error": null, + "finished_at": "2026-08-28T22:56:30+0200", + "finished_epoch": 1787950590.830065, + "result": "completed", + "started_at": "2026-08-28T22:56:30+0200", + "started_epoch": 1787950590.7656136 + } + ], + "message": "Slide features extracted.", + "outputs": { + "patch_features_path": { + "bytes": 366280, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_conch_v15/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5" + }, + "slide_features_path": { + "bytes": 52976, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/slide_features_titan/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5" + } + }, + "reason": null, + "status": "completed" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:56:30+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__b97b6956fcbd.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__b97b6956fcbd.json new file mode 100644 index 0000000000000000000000000000000000000000..328488b83d205f4f2ca9c64d0bd60157d8b44e28 --- /dev/null +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__b97b6956fcbd.json @@ -0,0 +1,86 @@ +{ + "meta": {}, + "resume": { + "last_status": "completed", + "last_task": "patch_features:keep", + "last_updated_at": "2026-08-28T22:08:35+0200" + }, + "schema_version": 2, + "slide": { + "abs_path": "/local/jobs/u25798_15579312/wsi-cache-15579312/gpu_0/batch_52/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs", + "ext": ".svs", + "id": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.svs__b97b6956fcbd", + "name": "TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8", + "reader_type": "OpenSlideWSI", + "rel_path": null + }, + "summary": { + "coords": "skipped (already_generated)", + "patch_features": { + "keep": "completed" + }, + "segmentation": "skipped (already_segmented)" + }, + "tasks": { + "coords": { + "_active_attempt_id": null, + "attempts": [], + "message": "Patch coords already generated; skipping.", + "outputs": { + "coords_h5": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" + } + }, + "reason": "already_generated", + "status": "skipped" + }, + "patch_features:keep": { + "_active_attempt_id": null, + "attempts": [ + { + "attempt_id": "7d9c88005b1b", + "duration_s": 34.274189472198486, + "error": null, + "finished_at": "2026-08-28T22:08:35+0200", + "finished_epoch": 1787947715.7156672, + "result": "completed", + "started_at": "2026-08-28T22:08:01+0200", + "started_epoch": 1787947681.4414778 + } + ], + "message": "Patch features extracted.", + "outputs": { + "coords_path": { + "bytes": 17800, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" + }, + "features_path": { + "bytes": 366280, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_1024px_0px_overlap/features_keep/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.h5" + } + }, + "reason": null, + "status": "completed" + }, + "segmentation": { + "_active_attempt_id": null, + "attempts": [], + "message": "Tissue already segmented; skipping.", + "outputs": { + "contour_jpg": { + "bytes": 115496, + "exists": true, + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/contours/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg" + } + }, + "reason": "already_segmented", + "status": "skipped" + } + }, + "trident_version": "0.3.0", + "updated_at": "2026-08-28T22:08:35+0200" +} diff --git a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__dcee8c73c594.json b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__dcee8c73c594.json index 74bebc623288e7870ca8a44ce955848fc00f85b4..0ab2f38b14ac43d289918bb11a8aa2d670d66881 100644 --- a/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__dcee8c73c594.json +++ b/Run-Information/prep/TCGA-GBM/wsi_states/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8__dcee8c73c594.json @@ -1,9 +1,9 @@ { "meta": {}, "resume": { - "last_status": "skipped", + "last_status": "completed", "last_task": "coords", - "last_updated_at": "2026-08-26T07:42:07+0200" + "last_updated_at": "2026-08-28T15:40:14+0200" }, "schema_version": 2, "slide": { @@ -15,7 +15,7 @@ "rel_path": null }, "summary": { - "coords": "skipped (already_generated)", + "coords": "completed (already_generated)", "segmentation": "skipped (already_segmented)" }, "tasks": { @@ -61,23 +61,73 @@ "result": "completed", "started_at": "2026-08-26T06:26:51+0200", "started_epoch": 1787718411.5061011 + }, + { + "attempt_id": "5d0851ccfcbe", + "duration_s": 0.21448087692260742, + "error": null, + "finished_at": "2026-08-28T15:09:56+0200", + "finished_epoch": 1787922596.5833843, + "result": "completed", + "started_at": "2026-08-28T15:09:56+0200", + "started_epoch": 1787922596.3689034 + }, + { + "attempt_id": "3d774cfd6ce7", + "duration_s": 0.17252802848815918, + "error": null, + "finished_at": "2026-08-28T15:17:31+0200", + "finished_epoch": 1787923051.091573, + "result": "completed", + "started_at": "2026-08-28T15:17:30+0200", + "started_epoch": 1787923050.919045 + }, + { + "attempt_id": "228f1d0fe754", + "duration_s": 0.36960721015930176, + "error": null, + "finished_at": "2026-08-28T15:24:49+0200", + "finished_epoch": 1787923489.3852348, + "result": "completed", + "started_at": "2026-08-28T15:24:49+0200", + "started_epoch": 1787923489.0156276 + }, + { + "attempt_id": "3546921b6e16", + "duration_s": 0.18063569068908691, + "error": null, + "finished_at": "2026-08-28T15:32:47+0200", + "finished_epoch": 1787923967.452513, + "result": "completed", + "started_at": "2026-08-28T15:32:47+0200", + "started_epoch": 1787923967.2718773 + }, + { + "attempt_id": "9166b35ed1c5", + "duration_s": 0.1664137840270996, + "error": null, + "finished_at": "2026-08-28T15:40:14+0200", + "finished_epoch": 1787924414.7838469, + "result": "completed", + "started_at": "2026-08-28T15:40:14+0200", + "started_epoch": 1787924414.617433 } ], - "message": "Patch coords already generated; skipping.", + "message": "Patch coords generated.", "outputs": { "coords_h5": { - "bytes": 116072, + "bytes": 11128, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_224px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/patches/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8_patches.h5" }, "coords_viz": { - "bytes": 55270, + "bytes": 55751, "exists": true, - "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_384px_0px_overlap/visualization/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg" + "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-TCGA-GBM/20x_2048px_0px_overlap/visualization/TCGA-41-2572-01Z-00-DX1.a89d5edf-1466-40b8-929f-d8b5554f31b8.jpg" } }, "reason": "already_generated", - "status": "skipped" + "status": "completed" }, "segmentation": { "_active_attempt_id": null, @@ -111,5 +161,5 @@ } }, "trident_version": "0.3.0", - "updated_at": "2026-08-26T07:42:07+0200" + "updated_at": "2026-08-28T15:40:14+0200" } diff --git 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