#!/bin/bash
#SBATCH --job-name=patch-sets-all
#SBATCH -p grete:interactive
#SBATCH --gres=gpu:2g.20gb:1
#SBATCH -c 40
#SBATCH --mem=160G
#SBATCH -t 12:00:00
#SBATCH --open-mode=append
#SBATCH --output=%x-%j.out
#SBATCH --error=%x-%j.err

# Ranked patch sets (100 patches per slide) for several datasets at once: one stream per dataset and encoder, all three scales each.
# The code runs on the CPU; the GPU slice is only there because the partition requires one.
# usage: sbatch --export=ALL,DATASETS="UBC-OCEAN PANDA TCGA-OT" patch-sets-all.slurm.sh
# Finished files are skipped, so a rerun resumes. Output: $PKG/patch-sets-out/<DATASET>/.

set -uo pipefail
PKG="${SLURM_SUBMIT_DIR:-$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)}"
WS="${PROJECT_DIR:-/projects/extern/kisski/kisski-imm/dir.project}/thanm_WSI"
source "${WSI_VENV:-$WS/env/WSI-Embedding}/bin/activate"
export HF_HUB_OFFLINE=1 TRANSFORMERS_OFFLINE=1 HF_HOME="$WS/hf_cache" HF_HUB_DIR="$WS/hf_cache/hub" EMB_ROOT="$WS/embeddings"
export OMP_NUM_THREADS=4 MKL_NUM_THREADS=4
export TOP1_ROOT="${TOP1_ROOT:-$WS/embedding-acquire/hpc-search-port/packets/repo/TTA-WSI/data/packets}"
DATASETS="${DATASETS:?set DATASETS}"
cd "$PKG/repo"
echo "start $(date '+%F %T %z') datasets $DATASETS top1 root $TOP1_ROOT"
for ds in $DATASETS; do
  OUT="$PKG/patch-sets-out/$ds"
  mkdir -p "$OUT"
  for enc in conch_v1 keep musk; do
    ( python -u experiments/miscellaneous/packets/patch_sets.py --encoder "$enc" --datasets "$ds" --out-dir "$OUT" --threads 4 > "$OUT/$enc.log" 2>&1; echo "$(date -Is) $ds $enc exit $?" ) &
  done
done
wait
echo "ALL DONE $(date '+%F %T %z')"