import argparse import json import sys from pathlib import Path import torch ROOT = Path(__file__).resolve().parents[3] sys.path.insert(0, str(ROOT / 'comparators/ProKeR-PTA')) from proker_pta.data import POOLED, pooled_file, raw_packet # writes the slide packet pooled at the best Top-P of each cell, so a machine without the 39 GB of ranked patch sets can run the best Top-P settings def main(): ap = argparse.ArgumentParser(description='Pool the ranked patch sets at the best Top-P into small slide packets.') ap.add_argument('--datasets', nargs='+') ap.add_argument('--redo', action='store_true') a = ap.parse_args() cells = json.loads((ROOT / 'experiments/miscellaneous/shared/cells.json').read_text())['best'] POOLED.mkdir(parents=True, exist_ok=True) for key, cell in cells.items(): path = pooled_file(cell) if cell['top_p'] == 1 or (a.datasets and cell['dataset'] not in a.datasets) or (path.exists() and not a.redo): continue raw = raw_packet(cell) torch.save(raw, path) print(f"{key} P{cell['top_p']}: {path.name} {path.stat().st_size / 1e6:.0f} MB", flush=True) if __name__ == '__main__': main()