{ "_meta": { "purpose": "Registry of every source a corpus passage may cite. A passage whose source_id is not listed here fails validation.", "reuse_rule": "CC BY sources may be paraphrased or quoted with attribution. Sources without a confirmed open licence are paraphrased only, never copied verbatim.", "recorded": "2026-10-01", "origin_of_source_choices": "Documents/plans/_archive/2026-09-30/2026-09-28-full-pipeline-implementation-plan/requirements/{who-iccr,bracs-knowledge,ebrains-cns-knowledge}-source-search.md", "tiers": { "T1": "guideline, society or government source", "T2": "peer-reviewed journal article or review (journal, year, article type recorded)", "T3": "Wikipedia, Libre Pathology or other community text", "T4": "anything else" }, "snapshot_note": "snapshot paths are repo-relative under data/datasets/knowledge-src (not tracked in git); sha256 recorded per source.", "merged": "2026-10-01 v2 merge (base + final-ebr + tcga-bracs); tier and legitimacy fields added per source" }, "sources": { "iccr-lung": { "citation": "International Collaboration on Cancer Reporting. Lung Cancer Histopathology Reporting Guide, 4th ed., v4.0, April 2023. ISBN 978-1-922324-34-4.", "url": "https://www.iccr-cancer.org/wp-content/uploads/2023/06/ICCR-Lung-4th-ed-v4.0-hyperlink.pdf", "license": "no explicit reuse terms found; paraphrase only", "verification": "downloaded and read in the earlier source search; synoptic checklist, taxonomy only, no narrative criteria", "tier": "T1", "tier_label": "Guideline / reporting standard", "legitimacy": "International Collaboration on Cancer Reporting (ICCR), a consortium of pathology colleges and societies; expert-panel reporting datasets used as national standards; synoptic checklist developed from the WHO 2021 taxonomy; not a journal article, no reuse licence found." }, "pmc7698816": { "citation": "Weng CF et al. New International Association for the Study of Lung Cancer (IASLC) Pathology Committee Grading System for the Prognostic Outcome of Advanced Lung Adenocarcinoma. Cancers 2020;12(11):3426. doi:10.3390/cancers12113426. PMC7698816", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC7698816/", "license": "CC BY 4.0 (confirmed from the Europe PMC licence element and the MDPI statement; see snapshots/pmc7698816-licence-evidence.txt)", "verification": "carried over from the existing lung criteria file | 2026-10-01 merge: Replaces the wrong author (Moreira) in APS-WSI/knowledge/sources.json. Proposal only; APS-WSI is not edited.", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc7698816.txt", "tier": "T2", "tier_label": "Peer-reviewed journal article (retrospective cohort study)", "legitimacy": "Cancers (2020). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Cancers", "year": 2020, "article_type": "retrospective cohort study" }, "pmc12308192": { "citation": "Patel S, Adiga DS. Evaluation of TTF-1, Napsin A, p40, and p63 in the Subtyping of Non-Small Cell Lung Carcinoma: A Cross-Sectional Study from India. Iran J Pathol 2025. PMC12308192.", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC12308192/", "license": "CC BY 4.0 (confirmed; see snapshots/pmc12308192-licence-evidence.txt)", "verification": "carried over from the existing lung criteria file; single-cohort percentages, a data point and not a consensus | 2026-10-01 merge: Licence confirmation only.", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc12308192.txt", "tier": "T2", "tier_label": "Peer-reviewed journal article (cross-sectional study (single centre, India))", "legitimacy": "Iranian journal of pathology (2025). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Iranian journal of pathology", "year": 2025, "article_type": "cross-sectional study (single centre, India)" }, "bracs-paper": { "citation": "Brancati N et al. BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. arXiv:2111.04740 (2021); Database 2022, baac093.", "url": "https://arxiv.org/abs/2111.04740", "license": "Two versions, two licences. arXiv version (arXiv:2111.04740): arXiv non-exclusive distribution licence (abstract page links arxiv.org/licenses/nonexclusive-distrib/1.0/). Journal version (Database 2022, baac093, doi 10.1093/database/baac093, PMC9575967): CC BY-NC 4.0. Non-commercial research use; paraphrase with attribution.", "verification": "full text fetched and read 2026-10-01 (section 'Subtype annotations')", "tier": "T2", "tier_label": "Dataset paper (journal + preprint)", "legitimacy": "BRACS dataset paper: published peer-reviewed in Database (Oxford) 2022 baac093; the cited text is the arXiv:2111.04740 preprint of it; the dataset itself is the source of the BRACS labels used in this thesis; the \"expert definition\" statements are the authors' annotation protocol, not a guideline." }, "pmc8833401": { "citation": "Khoury T. Preneoplastic Low-Risk Mammary Ductal Lesions (Atypical Ductal Hyperplasia and Ductal Carcinoma In Situ Spectrum): Current Status and Future Directions. Cancers (Basel) 2022;14(3):507. doi:10.3390/cancers14030507. PMC8833401.", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC8833401/", "license": "CC BY 4.0 (licence statement read on the page 2026-10-01)", "verification": "full text fetched and read 2026-10-01", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc8833401.txt", "tier": "T2", "tier_label": "Peer-reviewed journal article (review)", "legitimacy": "Cancers (2022). Europe PMC publication types: review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Cancers", "year": 2022, "article_type": "review" }, "pmc10216527": { "citation": "Martin KC, Ma C, Yip S. From Theory to Practice: Implementing the WHO 2021 Classification of Adult Diffuse Gliomas in Neuropathology Diagnosis. Brain Sci 2023;13(5):817. doi:10.3390/brainsci13050817. PMC10216527.", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC10216527/", "license": "CC BY 4.0 (MDPI open access licence statement read on the page 2026-10-01)", "verification": "full text fetched and read 2026-10-01", "tier": "T2", "tier_label": "Peer-reviewed journal article (narrative review)", "legitimacy": "Brain sciences (2023). Europe PMC publication types: review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Brain sciences", "year": 2023, "article_type": "narrative review" }, "pmc9427889": { "citation": "Torp SH, Solheim O, Skjulsvik AJ. The WHO 2021 Classification of Central Nervous System tumours: a practical update on what neurosurgeons need to know, a minireview. Acta Neurochir (Wien) 2022;164(9):2453-2464. doi:10.1007/s00701-022-05301-y. PMC9427889.", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC9427889/", "license": "CC BY 4.0 (licence statement read on the page 2026-10-01)", "verification": "full text fetched and read 2026-10-01, including its tables", "tier": "T2", "tier_label": "Peer-reviewed journal article (minireview)", "legitimacy": "Acta neurochirurgica (2022). Europe PMC publication types: Research Support, Non-U.S. Gov't, review-article, Review, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded. Journal: established neurosurgery journal.", "journal": "Acta neurochirurgica", "year": 2022, "article_type": "minireview" }, "librepath-anaplastic-astrocytoma": { "citation": "Libre Pathology, page 'Anaplastic astrocytoma', revision 48773 dated 2018-03-19", "url": "https://librepathology.org/w/index.php?title=Anaplastic_astrocytoma&oldid=48773", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-anaplastic-astrocytoma.txt", "sha256": "8cad435429a6e508b422c5a9af68e66684d9fe06143c4a7f0bfbb1b68ea51ae8", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2018; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-astrocytoma": { "citation": "Libre Pathology, page 'Astrocytoma', revision 52177 dated 2022-10-17", "url": "https://librepathology.org/w/index.php?title=Astrocytoma&oldid=52177", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-astrocytoma.txt", "sha256": "9da53245f48f82ca2515eda8f0d8b0c0699260c677a9951e86e75dbe9de15ea7", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-brain-metastasis": { "citation": "Libre Pathology, page 'Brain metastasis', revision 52929 dated 2024-04-26", "url": "https://librepathology.org/w/index.php?title=Brain_metastasis&oldid=52929", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-brain-metastasis.txt", "sha256": "668c1a825ba0ff55fc7b9d7d91e779e32ec00b8ca7c0ed9500b0d648e183a07d", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2024; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-craniopharyngioma": { "citation": "Libre Pathology, page 'Craniopharyngioma', revision 50390 dated 2019-10-11", "url": "https://librepathology.org/w/index.php?title=Craniopharyngioma&oldid=50390", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-craniopharyngioma.txt", "sha256": "6145b7a697d72d6e49ce248d8901ea77ed391d4f85b7a9ae34eeb264be841690", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2019; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-ependymoma": { "citation": "Libre Pathology, page 'Ependymoma', revision 52127 dated 2022-09-19", "url": "https://librepathology.org/w/index.php?title=Ependymoma&oldid=52127", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-ependymoma.txt", "sha256": "c9c1386f9e143d5f9deb4b0b6aed0d835e27779b537333fec1fff20b0425b204", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-ganglioglioma": { "citation": "Libre Pathology, page 'Ganglioglioma', revision 51932 dated 2022-04-04", "url": "https://librepathology.org/w/index.php?title=Ganglioglioma&oldid=51932", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-ganglioglioma.txt", "sha256": "aaa1917ffeb938e4edaed76e3b29b82920e3c674292bfa395149dc71054c8882", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-hemangioblastoma": { "citation": "Libre Pathology, page 'Hemangioblastoma', revision 53495 dated 2025-03-19", "url": "https://librepathology.org/w/index.php?title=Hemangioblastoma&oldid=53495", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-hemangioblastoma.txt", "sha256": "8fba6dc1764a8271980eef58d64fc446d82ee4ef5a45c644fef1378d0a1cbf76", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2025; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-hemangioma": { "citation": "Libre Pathology, page 'Hemangioma', revision 52047 dated 2022-05-16", "url": "https://librepathology.org/w/index.php?title=Hemangioma&oldid=52047", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-hemangioma.txt", "sha256": "2792a5aff6cd89b03a6db36933f383acbc539e50cdbf6867e308107db7010355", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-lch": { "citation": "Libre Pathology, page 'Langerhans cell histiocytosis', revision 43918 dated 2016-04-25", "url": "https://librepathology.org/w/index.php?title=Langerhans_cell_histiocytosis&oldid=43918", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-lch.txt", "sha256": "e60dda5397efaaf6afef135f35e40e5c1ff50ace4fe9a8fcda069f9a366f7b82", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-lipoma": { "citation": "Libre Pathology, page 'Lipoma', revision 49652 dated 2018-12-10", "url": "https://librepathology.org/w/index.php?title=Lipoma&oldid=49652", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-lipoma.txt", "sha256": "fe7428f4e3c53fde7653e0396c2bd7df09511148ff951d92517e8d87cba1d772", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2018; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-medulloblastoma": { "citation": "Libre Pathology, page 'Medulloblastoma', revision 50503 dated 2019-11-20", "url": "https://librepathology.org/w/index.php?title=Medulloblastoma&oldid=50503", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-medulloblastoma.txt", "sha256": "835f5391e93315fcb5b89638c2c881aba88f63d22870e89ee8972f25a82e37cd", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2019; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-meningioma": { "citation": "Libre Pathology, page 'Meningioma', revision 52129 dated 2022-09-19", "url": "https://librepathology.org/w/index.php?title=Meningioma&oldid=52129", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-meningioma.txt", "sha256": "f6c29931a632fb67a8fdf92fe4194196ca595c35018c63a59c0d4a2e1fae3aaa", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-neuropath-tumours": { "citation": "Libre Pathology, page 'Neuropathology tumours', revision 52004 dated 2022-04-14", "url": "https://librepathology.org/w/index.php?title=Neuropathology_tumours&oldid=52004", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-neuropath-tumours.txt", "sha256": "1ae786132b80fb3e6b78b83b76314093965f84d5e5c1d3f49947f461378e349b", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2022; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-pilocytic": { "citation": "Libre Pathology, page 'Pilocytic astrocytoma', revision 47235 dated 2017-04-10", "url": "https://librepathology.org/w/index.php?title=Pilocytic_astrocytoma&oldid=47235", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via action=raw on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current clinical practice; use: paraphrase only, non-commercial (Libre_Pathology:Copyrights says users are generally not allowed commercial use)", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/librepath-pilocytic.txt", "sha256": "14c25017df408a67f9e5c9f80f5f93d7a900a10653bf0dd2c8b970d11b741d12", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2017; widely used as a quick reference; NC-SA licence, paraphrase only. 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Combined Interhemispheric and Endoscopic Endonasal Resection of a Rare Olfactory Schwannoma with Preservation of Olfactory Function. Current Oncology 2026. PMC13605746. doi:10.3390/curroncol33090515", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC13605746/", "license": "CC BY (version not stated on the page) (read from the Europe PMC full-text XML licence element and the PMC article page, 2026-10-01)", "verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/pmc13605746.txt", "sha256": "f34cab3c0aabca53b0ffef0f9c2d0a20007b3eee1ddf770dff05307b08d52efb", "tier": "T2", "tier_label": "Peer-reviewed journal article (case report)", "legitimacy": "Current oncology (Toronto, Ont.) (2026). Europe PMC publication types: Journal Article, Case Reports, case-report. 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Sudden death associated with lipoma of the cerebellopontine angle. Autopsy & Case Reports 2022. PMC9422988. doi:10.4322/acr.2021.396", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC9422988/", "license": "CC BY (version not stated on the page) (read from the Europe PMC full-text XML licence element and the PMC article page, 2026-10-01)", "verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/pmc9422988.txt", "sha256": "8a7962212ffe7aa27ea9cfe482da42f7b49d7705a0ab49373e74b10a7c3eed89", "tier": "T2", "tier_label": "Peer-reviewed journal article (case report)", "legitimacy": "Autopsy & case reports (2022). Europe PMC publication types: Journal Article, Case Reports, case-report. 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PMC13564585. doi:10.3390/diagnostics16172723", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC13564585/", "license": "CC BY 4.0 (read from the Europe PMC full-text XML licence element, 2026-10-01)", "verification": "full text fetched via Europe PMC REST fullTextXML on 2026-10-01 and read; snapshot is the extracted text; added in the depth pass", "snapshot": "data/datasets/knowledge-src/final-ebr/snapshots/pmc13564585.txt", "sha256": "2064be5840291c203657e5fb9091ba77115141c8fea97e9473db1a67f582101b", "tier": "T2", "tier_label": "Peer-reviewed journal article (retrospective reappraisal of 23 cases)", "legitimacy": "Diagnostics (Basel, Switzerland) (2026). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Diagnostics (Basel, Switzerland)", "year": 2026, "article_type": "retrospective reappraisal of 23 cases" }, "bracs-paper-arxiv": { "citation": "Brancati N et al. BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. arXiv:2111.04740 (2021).", "url": "https://arxiv.org/pdf/2111.04740", "license": "Two versions, two licences. arXiv version (arXiv:2111.04740): arXiv non-exclusive distribution licence (abstract page links arxiv.org/licenses/nonexclusive-distrib/1.0/). Journal version (Database 2022, baac093, doi 10.1093/database/baac093, PMC9575967): CC BY-NC 4.0. 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Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-dcis": { "citation": "Libre Pathology, page 'Ductal carcinoma in situ', revision 44398 dated 2016-05-12", "url": "https://librepathology.org/w/index.php?title=Ductal_carcinoma_in_situ&oldid=44398", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-dcis.txt", "sha256": "e421ea212eec11d2726a010e4baa89cc84a9ecf74c12c5cc06435e8bc4e28b7e", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-fibroadenoma": { "citation": "Libre Pathology, page 'Fibroadenoma', revision 51069 dated 2021-01-05", "url": "https://librepathology.org/w/index.php?title=Fibroadenoma&oldid=51069", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-fibroadenoma.txt", "sha256": "1d6626c0aad01eccfa8e1262d41d7a6fbb00b46c478de88bedafddf1b831c9fd", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2021; widely used as a quick reference; NC-SA licence, paraphrase only." }, "librepath-fibrocystic-breast-changes": { "citation": "Libre Pathology, page 'Fibrocystic breast changes', revision 40567 dated 2015-10-14", "url": "https://librepathology.org/w/index.php?title=Fibrocystic_breast_changes&oldid=40567", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-fibrocystic-breast-changes.txt", "sha256": "3ab4fc08e14315db52b5b2d6b7fd16264a8620d6074bcef14cd3fd5ed8a7d6fe", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2015; widely used as a quick reference; NC-SA licence, paraphrase only. Revision predates the WHO 2021 classification, so terms and grades may be outdated." }, "librepath-flat-epithelial-atypia": { "citation": "Libre Pathology, page 'Flat epithelial atypia', revision 44056 dated 2016-05-01", "url": "https://librepathology.org/w/index.php?title=Flat_epithelial_atypia&oldid=44056", "license": "CC BY-NC-SA 3.0 (Copyrights page says NC SA 3.0)", "verification": "raw wikitext fetched via the MediaWiki API on 2026-10-01 and read; snapshot is the raw wikitext; page may be older than current practice", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/librepath-flat-epithelial-atypia.txt", "sha256": "ed2659f4237af7617ec2d063bd72625326d8b91a17f5c0ec337534c11f51f690", "license_note": "Commercial use generally not allowed (Libre Pathology:Copyrights); footer image alt text on one page says NC-SA 4.0, version inconsistent; paraphrase only, non-commercial use.", "tier": "T3", "tier_label": "Libre Pathology (community wiki)", "legitimacy": "Libre Pathology: volunteer-edited community wiki for pathologists and trainees, not peer-reviewed, no named review board; revision 2016; widely used as a quick reference; NC-SA licence, paraphrase only. 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PMC12153718", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC12153718/", "license": "CC BY 4.0 (licence statement read in the article text 2026-10-01)", "verification": "full text fetched via Europe PMC fullTextXML on 2026-10-01, extracted and read; snapshot is the extracted text", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc12153718.txt", "sha256": "f3735565f49971c3268a664b3db166fbb5eb29fd09ce720a93654e2e593eb69c", "tier": "T2", "tier_label": "Peer-reviewed journal article (retrospective study)", "legitimacy": "Cancers (2025). Europe PMC publication types: research-article, Journal Article. Indexed in PubMed Central / Europe PMC; open-access licence as recorded.", "journal": "Cancers", "year": 2025, "article_type": "retrospective study" }, "pmc12415442": { "citation": "Wang Y et al. 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Lepidic and alveolar subepithelial squamous cell carcinoma: expansion of the concept of peripheral squamous cell carcinoma with proposal for revised terminology based on morphologic, immunophenotypic, and clinical analysis of 22 cases. 2026. doi:10.1007/s00428-026-04524-z. PMC13368955", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC13368955/", "license": "CC BY 4.0 (licence statement read in the article text 2026-10-01)", "verification": "full text fetched via Europe PMC fullTextXML on 2026-10-01, extracted and read; snapshot is the extracted text", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc13368955.txt", "sha256": "b1916c2c0b77b7bcd3f249552aabd64da797ba1ccda4ec0446529d147e3c2438", "tier": "T2", "tier_label": "Peer-reviewed journal article (case series (22 cases))", "legitimacy": "Virchows Archiv : an international journal of pathology (2026). Europe PMC publication types: research-article, Journal Article. 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Inter-observer variability between general pathologists and a specialist in breast pathology in the diagnosis of lobular neoplasia, columnar cell lesions, atypical ductal hyperplasia and ductal carcinoma in situ of the breast. 2014. doi:10.1186/1746-1596-9-121. PMC4071798", "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC4071798/", "license": "CC BY 2.0 (licence statement read in the article text 2026-10-01)", "verification": "full text fetched via Europe PMC fullTextXML on 2026-10-01, extracted and read; snapshot is the extracted text", "snapshot": "data/datasets/knowledge-src/tcga-bracs/snapshots/pmc4071798.txt", "sha256": "e117dda93ac267520a171a2e5b85a008d67f5e76f5789ce4c03505dc2b32d21b", "tier": "T2", "tier_label": "Peer-reviewed journal article (comparative observational inter-observer study)", "legitimacy": "Diagnostic pathology (2014). Europe PMC publication types: Comparative Study, Research Support, Non-U.S. Gov't, research-article, Journal Article, Observational Study. 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