{"bib": false, "lane": "project", "file_edits": [{"file": "chapters/ch2_literature_review.tex", "search": "While Agentic AI provides unparalleled forensic analysis capabilities, the immense computational complexity of LLMs ($O(N^2)$ where N is the input sequence length for the Attention mechanism) creates a paradox: they cannot process massive volumes of raw network data streams at wire-speed. To resolve this problem, a high-throughput preprocessing data filtration mechanism operating with an optimal space and time complexity of $O(1)$ is mandatory.\n\nWelford's Online Algorithm \\cite{welford1962} provides a precise and numerically stable mathematical formulation for computing variance over streaming data. Instead of storing the entire historical dataset to compute the sum of squares (which poses risks of catastrophic cancellation and high complexity), Welford's algorithm updates the Mean ($\\mu_k$) and the Sum of Squared Differences ($M_{2,k}$) for each new data point $x_k$ using recurrence relations:", "replace": "While Agentic AI provides unparalleled forensic analysis capabilities, the immense computational complexity of LLMs ((N^2)$ where N is the input sequence length for the Attention mechanism) creates a paradox: they cannot process massive volumes of raw network data streams at wire-speed. To resolve this problem, a high-throughput preprocessing data filtration mechanism operating with an optimal space and time complexity of (1)$ is mandatory.\n\nWelford's Online Algorithm \\cite{welford1962} provides a precise and numerically stable mathematical formulation for computing variance over streaming data. Instead of storing the entire historical dataset to compute the sum of squares (which poses risks of catastrophic cancellation and high complexity), Welford's algorithm updates the Mean ($\\mu_k$) and the Sum of Squared Differences ({2,k}$) for each new data point $ using recurrence relations:", "type": "real"}, {"file": "chapters/ch2_literature_review.tex", "search": "By continuously maintaining rolling variance and mean with a constant $O(1)$ memory footprint, the system instantaneously computes a normalized Z-Score for each packet. This technique almost entirely eliminates benign background network traffic, thoroughly resolving the LLM latency bottleneck, while perfectly preserving lightweight anomalous event sequences, maintaining the context for low-and-slow APT infiltrations.", "replace": "By continuously maintaining rolling variance and mean with a constant (1)$ memory footprint, the system instantaneously computes a normalized Z-Score for each packet. This technique almost entirely eliminates benign background network traffic, thoroughly resolving the LLM latency bottleneck, while perfectly preserving lightweight anomalous event sequences, maintaining the context for low-and-slow APT infiltrations.", "type": "real"}], "reported_file": "main.tex", "fix_files": ["chapters/ch2_literature_review.tex"], "single_shot_visible": false, "error_lines": [{"line": 77, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}, {"line": 78, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}, {"line": 94, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": " string characters out of 5715799\n 545297 words of memory out of 5000000\n 31624 multiletter control sequences out of 15000+600000\n 584049 words of font info for 66 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,11n,65p,1122b,564s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (38 pages, 3521893 bytes).\nPDF statistics:\n 195 PDF objects out of 1000 (max. 8388607)\n 125 compressed objects within 2 object streams\n 0 named destinations out of 1000 (max. 500000)\n 21 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 77: Missing $ inserted.\n- line 78: Missing $ inserted.\n- line 94: Missing $ inserted.\n\nProject files:\n- chapters/ch1_introduction.tex\n- chapters/ch2_literature_review.tex\n- chapters/ch3_proposed_solution.tex\n- chapters/ch4_implementation.tex\n- chapters/ch5_experiments_evaluation.tex\n- chapters/ch6_conclusion.tex\n- images/agentic_fsm_workflow.png\n- images/log_substrate_prompt_injection.png\n- images/soc_ai_concept.png\n- images/soc_human_bottleneck.png\n- main.tex\n\nOther project files (edit them with ):\n\n`chapters/ch1_introduction.tex` (head and lines matching the log, line-numbered):\n```\n1: \\chapter{Introduction}\n2: \\label{ch:introduction}\n3: \n4: This chapter establishes the overarching context and foundational rationale for the research conducted in this thesis. By dissecting the rapidly evolving complexities of the modern cybersecurity landscape, it underscores the systemic vulnerabilities inherent in contemporary Security Operations Centers (SOCs). The introduction delineates the profound limitations of traditional, deterministic rule-based systems when confronting sophisticated, multi-stage cyber adversaries. Furthermore, it highlights the paradoxical challenges introduced by the integration of Generative Artificial Intelligence (GenAI)—balancing immense analytical potential against acute computational latency and adversarial manipulation risks. Consequently, this chapter articulates the necessity for SENTINEL, a novel cognitive two-tier architecture, outlining the specific research objectives, core inquiries, defined scope, and the experimental methodology that guides the empirical validation of the proposed system.\n5: \n6: \\section{Background and Motivation}\n7: \n8: The acceleration of global digital transformation, characterized by the pervasive adoption of cloud-native computing paradigms, the Internet of Things (IoT), and decentralized remote workforce infrastructures, has fundamentally eroded traditional network perimeters. Consequently, enterprise networks have transitioned into highly porous, heterogeneous environments, exponentially expanding the potential attack surfaces available to malicious actors. In this volatile ecosystem, cyber adversaries have continuously refined their methodologies, shifting from isolated, easily identifiable malware strains to highly orchestrated, stealthy campaigns known as Advanced Persistent Threats (APTs) \\cite{ids2018}. These sophisticated threat actors leverage polymorphic payloads, ``living-off-the-land'' (LotL) techniques, and encrypted command-and-control (C2) channels to obfuscate their activities, allowing them to traverse enterprise networks undetected for extended periods.\n9: \n10: Security Operations Centers (SOCs) operate as the vital defense mechanism for organizations, entrusted with the continuous monitoring, real-time detection, and rapid mitigation of such security incidents. To achieve this, modern SOCs deploy a myriad of security telemetry sensors, including Next-Generation Firewalls (NGFW), Intrusion Detection and Prevention Systems (IDS/IPS), and Endpoint Detection and Response (EDR) agents. These diverse data streams are typically aggregated into a central Security Information and Event Management (SIEM) platform \\cite{siem2021}. However, the relentless ingestion of this telemetry has catalyzed a structural crisis within the cybersecurity industry, commonly referred to as the ``Big Data Paradox'' of cybersecurity \\cite{bigdata2019}. This paradox manifests through several critical operational vulnerabilities:\n11: \n12: \\begin{itemize}\n13: \\item \\textbf{Alert Fatigue Crisis:} Traditional SIEM platforms and IDS appliances generate an overwhelming volume of security alerts daily, often numbering in the tens of thousands. The vast majority of these notifications are False Positives (FPs) triggered by benign anomalies, misconfigurations, or poorly tuned heuristic thresholds \\cite{alertfatigue2022}. This incessant barrage of alerts overwhelms Tier-1 security analysts, inducing severe cognitive overload and \"alert fatigue\". Consequently, the probability of a genuine, critical intrusion indicator being inadvertently dismissed or completely overlooked increases exponentially, rendering the human element the weakest link in the defense chain.\n14: \\item \\textbf{The Inefficacy of Deterministic Rule-Based Systems:} The foundational logic of traditional SIEM and IDS tools relies heavily on static signature matching and predefined heuristic rules \\cite{nist80061}. While highly effective at blocking known threat vectors, these mechanisms exhibit a profound structural blindness when confronted with Zero-day vulnerabilities, custom malware variants, or novel, signature-less exploitation techniques. Adversaries easily bypass these static defenses by making trivial modifications to their attack payloads.\n15: \\item \\textbf{Deficiencies in Temporal Data Reduction:} In an attempt to mitigate the prohibitive costs and computational overhead of processing petabytes of log data, numerous SOCs resort to random sampling, log truncation, or aggressive static thresholding. Unfortunately, these data reduction strategies inadvertently sever the temporal evidence chains. By dropping seemingly innocuous packets, the SOC destroys the critical contextual linkages necessary to reconstruct the ``low-and-slow'' behavioral patterns characteristic of APT campaigns, which rely on stealthy reconnaissance and subtle lateral movement spread across weeks or months \\cite{apt_stealth2021}.\n16: \\end{itemize}\n17: \n18: \\begin{figure}[H]\n19: \\centering\n20: \\includegraphics[width=0.9\\textwidth]{images/soc_ai_concept.png}\n21: \\caption{Conceptual Illustration of a Modern AI-Assisted Security Operations Center (SOC) confronting high-velocity threat data.}\n22: \\label{fig:soc_concept}\n23: \\end{figure}\n24: \n25: The recent maturation of Generative Artificial Intelligence (GenAI), and particularly Large Language Models (LLMs), has illuminated a promising paradigm shift for SOC automation. LLMs possess unprecedented capabilities for interpreting complex, unstructured contextual indicators, generating human-readable forensic summaries, and formulating autonomous incident response strategies. Nevertheless, the direct, unmediated integration of LLMs into the high-velocity data streams of a live SOC introduces two severe, intersecting bottlenecks:\n26: \n27: \\begin{enumerate}\n28: \\item \\textbf{Prohibitive Inference Latency and Computational Overhead:} Routing raw, unfiltered network packet captures comprehensively through a multi-billion paramet\n```\n\n`chapters/ch2_literature_review.tex` (head and lines matching the log, line-numbered):\n```\n1: \\chapter{Theoretical Background}\n2: \\label{ch:theoretical_background}\n3: \n4: This chapter establishes the in-depth theoretical foundations in computer science and cybersecurity that serve as the mathematical and architectural basis for the SENTINEL system. The content is systematically developed, beginning with an analysis of the structural limitations of modern Security Operations Centers (SOCs), followed by statistical anomaly detection algorithms, and delving into the core technologies of Generative AI. Specifically, this chapter explores the operating principles of Large Language Models (LLMs), Model Quantization techniques, Agentic AI architectures based on state-graphs, Retrieval-Augmented Generation (RAG) systems, and finally, a detailed analysis of adversarial AI security vulnerabilities.\n5: \n6: \\section{Overview of Security Operations Centers (SOCs) and the Cognitive Bottleneck}\n7: \n8: Modern Security Operations Centers (SOCs) form the core proactive defense layer of enterprise networks. Architecturally, a SOC operates as a centralized ecosystem, integrating a myriad of security appliances such as Security Information and Event Management (SIEM) platforms, Intrusion Detection and Prevention Systems (IDS/IPS), Next-Generation Firewalls (NGFW), and Endpoint Detection and Response (EDR) solutions. The standard Incident Response (IR) lifecycle requires these systems to ingest massive volumes of telemetry data, analyze them for anomalies based on static signatures or predefined heuristics, and generate alerts for Tier-1 analysts to investigate.\n9: \n10: However, the shift towards cloud-native computing models and Zero-Trust architectures has led to an unprecedented data explosion. This colossal volume of network traffic directly contributes to the ''Alert Fatigue'' challenge. In operational reality, Tier-1 analysts are frequently overwhelmed by tens of thousands of alerts daily, among which False Positives typically constitute the vast majority. From a cognitive science perspective, this continuous information overload depletes human attentional resources, leading to a severe degradation in analytical acuity, thereby exponentially increasing the probability of missing genuine and destructive threats \\cite{alertfatigue2022}.\n11: \n12: \\begin{figure}[H]\n13: \\centering\n14: \\includegraphics[width=0.85\\textwidth]{images/soc_human_bottleneck.png}\n15: \\caption{The human bottleneck in traditional SOC systems, where massive alert volumes overwhelm analyst capacity.}\n16: \\label{fig:soc_bottleneck}\n17: \\end{figure}\n18: \n19: Compounding this issue is the proliferation of Advanced Persistent Threats (APTs). APT campaigns are characterized by ''low-and-slow'' attack methodologies, where threat actors fragment their infiltration behavior into multiple insignificant event sequences, operating below the detection thresholds of traditional security systems. Deterministic rule-based systems, due to their over-reliance on instantaneous static thresholds, completely lack the capacity to maintain long-term state to contextualize and correlate these discrete indicators of compromise \\cite{apt_stealth2021}.\n20: \n21: \\section{Large Language Models (LLMs) and the Mathematics of Quantization}\n22: \n23: At the forefront of the Generative AI revolution are Large Language Models (LLMs), built primarily upon the Transformer neural network architecture. The foundational breakthrough of the Transformer is the Self-Attention mechanism, allowing the model to compute correlation weights among all tokens in an input sequence simultaneously, regardless of their positional distance. This capability eliminates the long-term forgetting problem of traditional RNN/LSTM networks, endowing LLMs with profound contextual natural language processing capabilities, making them ideal tools for interpreting unstructured security logs.\n24: \n25: However, integrating LLMs into a SOC environment faces a critical barrier regarding Data Sovereignty. Enterprise security data contains highly sensitive infrastructure information. Transmitting this data to external cloud LLM APIs directly violates security compliance standards and Zero-Trust principles. Consequently, deploying Local LLMs within fully air-gapped environments is a prerequisite.\n26: \n27: The subsequent barrier is the immense hardware requirement. For a model like \\textit{Gemma-2-9B-IT} (with 9 billion parameters) to run locally using 16-bit floating-point (FP16), it requires approximately 18GB of VRAM solely for weight storage. To be feasible on consumer-grade hardware, Model Quantization techniques must be applied. Quantization is a mathematical process aimed at reducing the resolution of neural network parameters from a continuous space (e.g., FP16) to a discrete space with lower bit-width (e.g., 4-bit integer, INT4). By utilizing the GGUF format and the Q4\\_K\\_M quantization standard via the \\texttt{llama.cpp} framework, the required memory footprint is reduced by over 70\\%, while utilizing memory bandwidth more efficiently, ensuring high inference speeds with negligible degradation in cognitive capacity compared to the original model.\n28: \n29: \\section{Agentic AI Architecture and State-Graph Models}\n30: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % =============================================================================\n2: % FPT UNIVERSITY - MASTER OF SOFTWARE ENGINEERING (MSE) THESIS TEMPLATE\n3: % Formatted strictly according to FPT MSE Thesis Guidelines (V5)\n4: % =============================================================================\n5: \\documentclass[12pt,a4paper]{report}\n6: \n7: % --- Packages ---\n8: \\usepackage[utf8]{inputenc}\n9: \\usepackage[T5]{fontenc} % Keep T5 for any occasional Vietnamese names\n10: \\usepackage[english]{babel}\n11: \\addto\\captionsenglish{\\renewcommand{\\bibname}{References}}\n12: \\usepackage{times} % Times New Roman font\n13: \\usepackage{geometry}\n14: \\geometry{top=2.54cm, bottom=2.54cm, left=3.0cm, right=2.8cm} % Margin rules\n15: \\usepackage{graphicx}\n16: \\usepackage{setspace} % Double spacing package\n17: \\usepackage{fancyhdr} % Page numbering custom configuration\n18: \\usepackage{titlesec}\n19: \\usepackage{booktabs}\n20: \\usepackage{enumitem}\n21: \\usepackage{amsmath}\n22: \\usepackage{amssymb}\n23: \\usepackage{url}\n24: \\usepackage{cite}\n25: \\usepackage{array}\n26: \\usepackage{longtable}\n27: \\usepackage{float}\n28: \\usepackage{listings}\n29: \\usepackage{xcolor}\n30: \n31: % --- Paragraph Formatting (Block Style: No indent, 6pt space above) ---\n32: \\setlength{\\parindent}{0pt}\n33: \\setlength{\\parskip}{6pt}\n34: \n35: % --- Headings Formatting (Maximum 3 levels) ---\n36: \\setcounter{secnumdepth}{3}\n37: \\titleformat{\\chapter}[display]{\\Large\\bfseries\\centering}{\\chaptername\\ \\thechapter}{0.5em}{}\n38: \\titleformat{\\section}{\\large\\bfseries}{\\thesection}{0.5em}{}\n39: \\titleformat{\\subsection}{\\normalsize\\bfseries}{\\thesubsection}{0.5em}{}\n40: \\titleformat{\\subsubsection}{\\normalsize\\itshape}{\\thesubsubsection}{0.5em}{}\n41: \n42: % --- Code Block Styling ---\n43: \\lstset{\n44: basicstyle=\\ttfamily\\small,\n45: breaklines=true,\n46: frame=single,\n47: backgroundcolor=\\color{gray!5},\n48: keywordstyle=\\color{blue},\n49: commentstyle=\\color{green!60!black},\n50: stringstyle=\\color{orange},\n51: showstringspaces=false,\n52: inputencoding=utf8,\n53: extendedchars=true\n54: }\n55: \n56: % --- Header/Footer Customization (Page number on Top-Right) ---\n57: \\pagestyle{fancy}\n58: \\fancyhf{}\n59: \\fancyhead[R]{\\thepage} % Position page number on top right\n60: \\renewcommand{\\headrulewidth}{0pt} % Remove header line\n61: \n62: % Override standard plain style (which is automatically used on Chapter start pages)\n63: \\fancypagestyle{plain}{\n64: \\fancyhf{}\n65: \\fancyhead[R]{\\thepage}\n66: \\renewcommand{\\headrulewidth}{0pt}\n67: }\n68: \n69: % =============================================================================\n70: \\begin{document}\n71: \\selectlanguage{english}\n72: \n73: % -----------------------------------------------------------------------------\n74: % FRONT MATTER (No page numbering on cover pages)\n75: % -----------------------------------------------------------------------------\n76: \\pagestyle{empty}\n77: \n78: % Cover Page 1\n79: \\begin{titlepage}\n80: \\centering\n81: \\vspace*{1cm}\n82: {\\large\\textbf{MINISTRY OF EDUCATION AND TRAINING}}\\\\[0.1cm]\n83: {\\large\\textbf{FPT UNIVERSITY}}\\\\[3cm]\n84: \n85: {\\Large A TWO-TIER COGNITIVE ARCHITECTURE FOR AUTOMATED THREAT DETECTION AND RESPONSE USING AGENTIC AI}\\\\[3cm]\n86: \n87: by\\\\[1cm]\n88: \n89: Nguyen Duc Binh\\\\[3cm]\n90: \n91: A thesis submitted in conformity with the requirements\\\\\n92: for the degree of Master of Software Engineering\\\\[1cm]\n93: \n94: \\vfill\n95: {\\normalsize \\copyright\\ Copyright by Nguyen Duc Binh 2026}\n96: \\end{titlepage}\n97: \n98: % Cover Page 2 (with Supervisors)\n99: \\begin{titlepage}\n100: \\centering\n101: \\vspace*{1cm}\n102: {\\large\\textbf{MINISTRY OF EDUCATION AND TRAINING}}\\\\[0.1cm]\n103: {\\large\\textbf{FPT UNIVERSITY}}\\\\[3cm]\n104: \n105: {\\Large A TWO-TIER COGNITIVE ARCHITECTURE FOR AUTOMATED THREAT DETECTION AND RESPONSE USING AGENTIC AI}\\\\[3cm]\n106: \n107: by\\\\[1cm]\n108: \n109: Nguyen Duc Binh\\\\[3cm]\n110: \n111: A thesis submitted in conformity with the requirements\\\\\n112: for the degree of Master of Software Engineering\\\\[2cm]\n113: \n114: Supervisor:\\\\\n115: Dr. Bui Van Hieu\\\\\n116: Dr. Dang Van Hieu\\\\[1cm]\n117: \n118: \\vfill\n119: {\\normalsize \\copyright\\ Copyright by Nguyen Duc Binh 2026}\n120: \\end{titlepage}\n121: \n122: % -----------------------------------------------------------------------------\n123: % FRONT MATTER (ARABIC NUMERALS 1, 2, 3...)\n124: % -----------------------------------------------------------------------------\n125: \\pagenumbering{arabic}\n126: \\pagestyle{fancy}\n127: \\setcounter{page}{1} % Starts from page 1 after cover pages\n128: \n129: % Abstract Page\n130: \\newpage\n131: \\addcontentsline{toc}{chapter}{Abstract}\n132: \\begin{center}\n133: {\\Large\\textbf{Abstract}}\n134: \\end{center}\n135: \\vspace{0.5cm}\n136: \n137: \\begin{singlespace}\n138: In the contemporary cybersecurity landscape, Security Operations Centers (SOCs) are consistently overwhelmed by the sheer volume of network alerts, leading to severe alert fatigue and the potential oversight of critical Advanced Persistent Threats (APTs). To address the inherent limitations of traditional, static rule-based systems and the latency bottlenecks of processing raw logs directly through Large Language Models (LLMs), this thesis introduces SENTINEL: A Two-Tier Cognitive Architecture for Automated Threat Detection and Response. The proposed framework operates by deploying Welford's online statistical algorithm at the Transport Tier (Tier-1) to filter benign traffic at wire speed with minimal computational overhead. Subsequently, the Cognitive Agent Tier (Tier-2) leverages a LangGraph-driven AI Agent equipped with a Dual Retrieval-Augmented Generation (Dual-RAG) mechanism—integrating MITRE ATT\\&CK and NIST guidelines—to perform deep, contextual threat reasoning and mitigation. \n139: \n140: Evaluated on the CSE-CIC-IDS2018 and DAPT2020 datasets, SENTINEL demonstrates substantial improvements in both detection accuracy and processing efficiency. Furthermore, the system incorporates robust AI security guardrails, including Delimited Data Encapsulation and HMAC log chaining, achieving near-perfect mitigation against known adversarial AI manipulation attacks and ensuring forensic data integrity. The findings underscore the efficacy of combining deterministic statistical filters with explainable Agentic AI, offering a highly scalable and secure automation solution for modern network defense.\n141: \n142: \\vspace{0.5cm}\n143: \\noindent\\textbf{Keywords:} Retrieval-Augmented Generation, Agentic AI, Network Security, SOC Automation, Welford's Algorithm, Adversarial AI Security.\n144: \\end{singlespace}\n145: \n146: % Acknowledgements Page\n147: \\newpage\n148: \\addcontentsline{toc}{chapter}{Acknowledgments}\n149: \\begin{center}\n150: {\\Large\\textbf{Acknowledgments}}\n151: \\end{center}\n152: \\vspace{0.5cm}\n153: \n154: I would like to express my deepest gratitude to my supervisors, Dr. Bui Van Hieu and Dr. Dang Van Hieu, for their invaluable assistance, dedicated guidance, and insightful feedback throughout the development and writing of this thesis. Their profound expertise and continuous encouragement have been instrumental in the successful completion of this research.\n155: \n156: I am particularly grateful to all the faculty members and staff at FPT University for their kind support, excellent academic environment, and provision of necessary resources during my master's study.\n157: \n158: Finally, I would like to extend my heartfelt thanks to my family for their unwavering moral support, patience, and understanding throughout my academic journey.\n159: \n160: % Lists and Table of Contents\n161: \\newpage\n162: \\listoffigures\n163: \\newpage\n164: \\listoftables\n165: \\newpage\n166: \\tableofcontents\n167: \n168: % -----------------------------------------------------------------------------\n169: % MAIN BODY\n170: % -----------------------------------------------------------------------------\n171: \\newpage\n172: \\onehalfspacing % Apply 1.5 Spacing rules to main body text\n173: \n174: % Include modular chapter files\n175: \\include{chapters/ch1_introduction}\n176: \\include{chapters/ch2_literature_review}\n177: \\include{chapters/ch3_proposed_solution}\n178: \\include{chapters/ch4_implementation}\n179: \\include{chapters/ch5_experiments_evaluation}\n180: \\include{chapters/ch6_conclusion}\n181: \n182: % -----------------------------------------------------------------------------\n183: % REFERENCES (Continuous page numbering)\n184: % -----------------------------------------------------------------------------\n185: \\newpage\n186: \\singlespacing % References are typically single-spaced\n187: \n188: \\begin{thebibliography}{99}\n189: \\addcontentsline{toc}{chapter}{References}\n190: \n191: \\bibitem{ids2018}\n192: I. Sharafaldin, A. H. Lashkari, and A. A. Ghorbani, ``Toward Generating a New Dataset for Cyber Security in Ad hoc Networks,'' in \\textit{Proceedings of the International Conference on Information Systems Security and Privacy (ICISSP)}, 2018.\n193: \n194: \\bibitem{siem2021}\n195: A. Alsubaei, A. Abuhussein, and S. Shiva, ``Security Information and Event Management (SIEM) Features, Challenges, and Solutions,'' \\textit{IEEE Access}, vol. 9, pp. 121111--121128, 2021.\n196: \n197: \\bibitem{bigdata2019}\n198: P. M. M. S. Silva \\textit{et al.}, ``The Big Data Security Challenges in the Era of Cloud Computing,'' \\textit{Computer Networks}, vol. 156, pp. 102--115, 2019.\n199: \n200: \\bibitem{apt_stealth2021}\n201: M. Alshamrani \\textit{et al.}, ``A Survey on Advanced Persistent Threats: Techniques, Solutions, Challenges, and Research Opportunities,'' \\textit{IEEE Communications Surveys \\& Tutorials}, vol. 21, no. 2, pp. 1851--1877, 2021.\n202: \n203: \\bibitem{alertfatigue2022}\n204: S. Hassan, M. A. Saleem, and O. E. Ogu, ``Alert Fatigue in Cybersecurity: A Review,'' \\textit{IEEE Access}, vol. 10, pp. 58632--58645, 2022.\n205: \n206: \\bibitem{welford1962}\n207: B. P. Welford, ``Note on a Method for Calculating Corrected Sums of Squares and Products,'' \\textit{Technometrics}, vol. 4, no. 3, pp. 419--420, 1962.\n208: \n209: \\bibitem{rag2020}\n210: P. Lewis \\textit{et al.}, ``Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks,'' \\textit{Advances in Neural Information Processing Systems (NeurIPS)}, vol. 33, pp. 9459--9474, 2020.\n211: \n212: \\bibitem{langgraph2024}\n213: LangChain AI, ``LangGraph: Multi-Actor, Stateful LLM Applications,'' \\textit{GitHub repository}, 2024. [Online]. Available: https://github.com/langchain-ai/langgraph\n214: \n215: \\bibitem{promptinjection2023}\n216: K. Greshake, S. Abdelnabi, S. Mishra, A. Endres, T. Holz, and M. Fritz, ``More than you've asked for: A Comprehensive Analysis of Novel Prompt Injection Threats to Application-Integrated Large Language Models,'' \\textit{arXiv preprint arXiv:2302.12173}, 2023.\n217: \n218: \\bibitem{nist80061}\n219: P. Cichonski, T. Millar, T. Grance, and K. Scarfone, ``Computer Security Incident Handling Guide,'' NIST Special Publication 800-61 Revision 2, 2012.\n220: \n221: \\bibitem{rrf2009}\n222: G. V. Cormack, C. L. A. Clarke, and S. Buettcher, ``Reciprocal Rank Fusion Outperforms Condorcet and Individual Bootstrap Product Algorithms,'' in \\textit{Proceedings of the 32nd International ACM SIGIR Conference on Research and Development in Information Retrieval}, 2009.\n223: \n224: \\bibitem{watchtower2026}\n225: T. Ravindran \\textit{et al.}, ``Poisoning the Watchtower: Prompt Injection Attacks Against LLM-Augmented Security Operations Through Adversarial Log Content,'' \\textit{arXiv preprint arXiv:2605.24421}, 2026.\n226: \n227: \\bibitem{cyberrag2025}\n228: A. Researcher \\textit{et al.}, ``CyberRAG: An Agentic RAG cyber attack classification and reporting tool,'' \\textit{Future Generation Computer Systems}, vol. 176, p. 108186, 2026.\n229: \n230: \\bibitem{lang2026}\n231: A. Abdennebi \\textit{et al.}, ``LanG -- A Governance-Aware Agentic AI Platform for Unified Security Operations,'' \\textit{arXiv preprint arXiv:2604.05440}, 2026.\n232: \n233: \\bibitem{splunkllm2026}\n234: M. Analyst \\textit{et al.}, ``Policy-Guided Threat Hunting: An LLM enabled Framework with Splunk SOC Triage,'' \\textit{arXiv preprint arXiv:2603.23966}, 2026.\n235: \n236: \\end{thebibliography}\n237: \n238: \\end{document}\n239: \n```\n\nCompile log (tail):\n```\nstring characters out of 5715799\n 545297 words of memory out of 5000000\n 31624 multiletter control sequences out of 15000+600000\n 584049 words of font info for 66 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,11n,65p,1122b,564s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (38 pages, 3521893 bytes).\nPDF statistics:\n 195 PDF objects out of 1000 (max. 8388607)\n 125 compressed objects within 2 object streams\n 0 named destinations out of 1000 (max. 500000)\n 21 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\nBy continuously maintaining rolling variance and mean with a constant (1)$ memory footprint, the system instantaneously computes a normalized Z-Score for each packet. This technique almost entirely eliminates benign background network traffic, thoroughly resolving the LLM latency bottleneck, while perfectly preserving lightweight anomalous event sequences, maintaining the context for low-and-slow APT infiltrations.\n=======\nBy continuously maintaining rolling variance and mean with a constant $O(1)$ memory footprint, the system instantaneously computes a normalized Z-Score for each packet. This technique almost entirely eliminates benign background network traffic, thoroughly resolving the LLM latency bottleneck, while perfectly preserving lightweight anomalous event sequences, maintaining the context for low-and-slow APT infiltrations.\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\nWhile Agentic AI provides unparalleled forensic analysis capabilities, the immense computational complexity of LLMs ((N^2)$ where N is the input sequence length for the Attention mechanism) creates a paradox: they cannot process massive volumes of raw network data streams at wire-speed. To resolve this problem, a high-throughput preprocessing data filtration mechanism operating with an optimal space and time complexity of (1)$ is mandatory.\n\nWelford's Online Algorithm \\cite{welford1962} provides a precise and numerically stable mathematical formulation for computing variance over streaming data. Instead of storing the entire historical dataset to compute the sum of squares (which poses risks of catastrophic cancellation and high complexity), Welford's algorithm updates the Mean ($\\mu_k$) and the Sum of Squared Differences ({2,k}$) for each new data point $ using recurrence relations:\n=======\nWhile Agentic AI provides unparalleled forensic analysis capabilities, the immense computational complexity of LLMs ($O(N^2)$ where N is the input sequence length for the Attention mechanism) creates a paradox: they cannot process massive volumes of raw network data streams at wire-speed. To resolve this problem, a high-throughput preprocessing data filtration mechanism operating with an optimal space and time complexity of $O(1)$ is mandatory.\n\nWelford's Online Algorithm \\cite{welford1962} provides a precise and numerically stable mathematical formulation for computing variance over streaming data. Instead of storing the entire historical dataset to compute the sum of squares (which poses risks of catastrophic cancellation and high complexity), Welford's algorithm updates the Mean ($\\mu_k$) and the Sum of Squared Differences ($M_{2,k}$) for each new data point $x_k$ using recurrence relations:\n>>>>>>> REPLACE\n", "id": "github_Binhchuoizzz__AI_Security_Graph__190cab7", "doc": "github_multi/Binhchuoizzz__AI_Security_Graph__190cab7", "mutation": "real", "source": "github", "repo": "Binhchuoizzz/AI_Security_Graph", "sha": "190cab7dd9c1833fe03694583a9042b21fbd536a", "parent_sha": "b22cf033a282d08e0713bfa5447e52219e754b76", "license": "MIT", "url": "https://github.com/Binhchuoizzz/AI_Security_Graph/commit/190cab7dd9c1833fe03694583a9042b21fbd536a", "changed_files": ["chapters/ch2_literature_review.tex"], "original_root": "main.tex", "n_files": 7, "engine": "pdflatex", "error_category": "Missing $ inserted.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 77: Missing $ inserted.\n- line 78: Missing $ inserted.\n- line 94: Missing $ inserted.\n\nProject files:\n- chapters/ch1_introduction.tex\n- chapters/ch2_literature_review.tex\n- chapters/ch3_proposed_solution.tex\n- chapters/ch4_implementation.tex\n- chapters/ch5_experiments_evaluation.tex\n- chapters/ch6_conclusion.tex\n- images/agentic_fsm_workflow.png\n- images/log_substrate_prompt_injection.png\n- images/soc_ai_concept.png\n- images/soc_human_bottleneck.png\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % =============================================================================\n2: % FPT UNIVERSITY - MASTER OF SOFTWARE ENGINEERING (MSE) THESIS TEMPLATE\n3: % Formatted strictly according to FPT MSE Thesis Guidelines (V5)\n4: % =============================================================================\n5: \\documentclass[12pt,a4paper]{report}\n6: \n7: % --- Packages ---\n8: \\usepackage[utf8]{inputenc}\n9: \\usepackage[T5]{fontenc} % Keep T5 for any occasional Vietnamese names\n10: \\usepackage[english]{babel}\n11: \\addto\\captionsenglish{\\renewcommand{\\bibname}{References}}\n12: \\usepackage{times} % Times New Roman font\n13: \\usepackage{geometry}\n14: \\geometry{top=2.54cm, bottom=2.54cm, left=3.0cm, right=2.8cm} % Margin rules\n15: \\usepackage{graphicx}\n16: \\usepackage{setspace} % Double spacing package\n17: \\usepackage{fancyhdr} % Page numbering custom configuration\n18: \\usepackage{titlesec}\n19: \\usepackage{booktabs}\n20: \\usepackage{enumitem}\n21: \\usepackage{amsmath}\n22: \\usepackage{amssymb}\n23: \\usepackage{url}\n24: \\usepackage{cite}\n25: \\usepackage{array}\n26: \\usepackage{longtable}\n27: \\usepackage{float}\n28: \\usepackage{listings}\n29: \\usepackage{xcolor}\n30: \n31: % --- Paragraph Formatting (Block Style: No indent, 6pt space above) ---\n32: \\setlength{\\parindent}{0pt}\n33: \\setlength{\\parskip}{6pt}\n34: \n35: % --- Headings Formatting (Maximum 3 levels) ---\n36: \\setcounter{secnumdepth}{3}\n37: \\titleformat{\\chapter}[display]{\\Large\\bfseries\\centering}{\\chaptername\\ \\thechapter}{0.5em}{}\n38: \\titleformat{\\section}{\\large\\bfseries}{\\thesection}{0.5em}{}\n39: \\titleformat{\\subsection}{\\normalsize\\bfseries}{\\thesubsection}{0.5em}{}\n40: \\titleformat{\\subsubsection}{\\normalsize\\itshape}{\\thesubsubsection}{0.5em}{}\n41: \n42: % --- Code Block Styling ---\n43: \\lstset{\n44: basicstyle=\\ttfamily\\small,\n45: breaklines=true,\n46: frame=single,\n47: backgroundcolor=\\color{gray!5},\n48: keywordstyle=\\color{blue},\n49: commentstyle=\\color{green!60!black},\n50: stringstyle=\\color{orange},\n51: showstringspaces=false,\n52: inputencoding=utf8,\n53: extendedchars=true\n54: }\n55: \n56: % --- Header/Footer Customization (Page number on Top-Right) ---\n57: \\pagestyle{fancy}\n58: \\fancyhf{}\n59: \\fancyhead[R]{\\thepage} % Position page number on top right\n60: \\renewcommand{\\headrulewidth}{0pt} % Remove header line\n61: \n62: % Override standard plain style (which is automatically used on Chapter start pages)\n63: \\fancypagestyle{plain}{\n64: \\fancyhf{}\n65: \\fancyhead[R]{\\thepage}\n66: \\renewcommand{\\headrulewidth}{0pt}\n67: }\n68: \n69: % =============================================================================\n70: \\begin{document}\n71: \\selectlanguage{english}\n72: \n73: % -----------------------------------------------------------------------------\n74: % FRONT MATTER (No page numbering on cover pages)\n75: % -----------------------------------------------------------------------------\n76: \\pagestyle{empty}\n77: \n78: % Cover Page 1\n79: \\begin{titlepage}\n80: \\centering\n81: \\vspace*{1cm}\n82: {\\large\\textbf{MINISTRY OF EDUCATION AND TRAINING}}\\\\[0.1cm]\n83: {\\large\\textbf{FPT UNIVERSITY}}\\\\[3cm]\n84: \n85: {\\Large A TWO-TIER COGNITIVE ARCHITECTURE FOR AUTOMATED THREAT DETECTION AND RESPONSE USING AGENTIC AI}\\\\[3cm]\n86: \n87: by\\\\[1cm]\n88: \n89: Nguyen Duc Binh\\\\[3cm]\n90: \n91: A thesis submitted in conformity with the requirements\\\\\n92: for the degree of Master of Software Engineering\\\\[1cm]\n93: \n94: \\vfill\n95: {\\normalsize \\copyright\\ Copyright by Nguyen Duc Binh 2026}\n96: \\end{titlepage}\n97: \n98: % Cover Page 2 (with Supervisors)\n99: \\begin{titlepage}\n100: \\centering\n101: \\vspace*{1cm}\n102: {\\large\\textbf{MINISTRY OF EDUCATION AND TRAINING}}\\\\[0.1cm]\n103: {\\large\\textbf{FPT UNIVERSITY}}\\\\[3cm]\n104: \n105: {\\Large A TWO-TIER COGNITIVE ARCHITECTURE FOR AUTOMATED THREAT DETECTION AND RESPONSE USING AGENTIC AI}\\\\[3cm]\n106: \n107: by\\\\[1cm]\n108: \n109: Nguyen Duc Binh\\\\[3cm]\n110: \n111: A thesis submitted in conformity with the requirements\\\\\n112: for the degree of Master of Software Engineering\\\\[2cm]\n113: \n114: Supervisor:\\\\\n115: Dr. Bui Van Hieu\\\\\n116: Dr. Dang Van Hieu\\\\[1cm]\n117: \n118: \\vfill\n119: {\\normalsize \\copyright\\ Copyright by Nguyen Duc Binh 2026}\n120: \\end{titlepage}\n121: \n122: % -----------------------------------------------------------------------------\n123: % FRONT MATTER (ARABIC NUMERALS 1, 2, 3...)\n124: % -----------------------------------------------------------------------------\n125: \\pagenumbering{arabic}\n126: \\pagestyle{fancy}\n127: \\setcounter{page}{1} % Starts from page 1 after cover pages\n128: \n129: % Abstract Page\n130: \\newpage\n131: \\addcontentsline{toc}{chapter}{Abstract}\n132: \\begin{center}\n133: {\\Large\\textbf{Abstract}}\n134: \\end{center}\n135: \\vspace{0.5cm}\n136: \n137: \\begin{singlespace}\n138: In the contemporary cybersecurity landscape, Security Operations Centers (SOCs) are consistently overwhelmed by the sheer volume of network alerts, leading to severe alert fatigue and the potential oversight of critical Advanced Persistent Threats (APTs). To address the inherent limitations of traditional, static rule-based systems and the latency bottlenecks of processing raw logs directly through Large Language Models (LLMs), this thesis introduces SENTINEL: A Two-Tier Cognitive Architecture for Automated Threat Detection and Response. The proposed framework operates by deploying Welford's online statistical algorithm at the Transport Tier (Tier-1) to filter benign traffic at wire speed with minimal computational overhead. Subsequently, the Cognitive Agent Tier (Tier-2) leverages a LangGraph-driven AI Agent equipped with a Dual Retrieval-Augmented Generation (Dual-RAG) mechanism—integrating MITRE ATT\\&CK and NIST guidelines—to perform deep, contextual threat reasoning and mitigation. \n139: \n140: Evaluated on the CSE-CIC-IDS2018 and DAPT2020 datasets, SENTINEL demonstrates substantial improvements in both detection accuracy and processing efficiency. Furthermore, the system incorporates robust AI security guardrails, including Delimited Data Encapsulation and HMAC log chaining, achieving near-perfect mitigation against known adversarial AI manipulation attacks and ensuring forensic data integrity. The findings underscore the efficacy of combining deterministic statistical filters with explainable Agentic AI, offering a highly scalable and secure automation solution for modern network defense.\n141: \n142: \\vspace{0.5cm}\n143: \\noindent\\textbf{Keywords:} Retrieval-Augmented Generation, Agentic AI, Network Security, SOC Automation, Welford's Algorithm, Adversarial AI Security.\n144: \\end{singlespace}\n145: \n146: % Acknowledgements Page\n147: \\newpage\n148: \\addcontentsline{toc}{chapter}{Acknowledgments}\n149: \\begin{center}\n150: {\\Large\\textbf{Acknowledgments}}\n151: \\end{center}\n152: \\vspace{0.5cm}\n153: \n154: I would like to express my deepest gratitude to my supervisors, Dr. Bui Van Hieu and Dr. Dang Van Hieu, for their invaluable assistance, dedicated guidance, and insightful feedback throughout the development and writing of this thesis. Their profound expertise and continuous encouragement have been instrumental in the successful completion of this research.\n155: \n156: I am particularly grateful to all the faculty members and staff at FPT University for their kind support, excellent academic environment, and provision of necessary resources during my master's study.\n157: \n158: Finally, I would like to extend my heartfelt thanks to my family for their unwavering moral support, patience, and understanding throughout my academic journey.\n159: \n160: % Lists and Table of Contents\n161: \\newpage\n162: \\listoffigures\n163: \\newpage\n164: \\listoftables\n165: \\newpage\n166: \\tableofcontents\n167: \n168: % -----------------------------------------------------------------------------\n169: % MAIN BODY\n170: % -----------------------------------------------------------------------------\n171: \\newpage\n172: \\onehalfspacing % Apply 1.5 Spacing rules to main body text\n173: \n174: % Include modular chapter files\n175: \\include{chapters/ch1_introduction}\n176: \\include{chapters/ch2_literature_review}\n177: \\include{chapters/ch3_proposed_solution}\n178: \\include{chapters/ch4_implementation}\n179: \\include{chapters/ch5_experiments_evaluation}\n180: \\include{chapters/ch6_conclusion}\n181: \n182: % -----------------------------------------------------------------------------\n183: % REFERENCES (Continuous page numbering)\n184: % -----------------------------------------------------------------------------\n185: \\newpage\n186: \\singlespacing % References are typically single-spaced\n187: \n188: \\begin{thebibliography}{99}\n189: \\addcontentsline{toc}{chapter}{References}\n190: \n191: \\bibitem{ids2018}\n192: I. Sharafaldin, A. H. Lashkari, and A. A. Ghorbani, ``Toward Generating a New Dataset for Cyber Security in Ad hoc Networks,'' in \\textit{Proceedings of the International Conference on Information Systems Security and Privacy (ICISSP)}, 2018.\n193: \n194: \\bibitem{siem2021}\n195: A. Alsubaei, A. Abuhussein, and S. Shiva, ``Security Information and Event Management (SIEM) Features, Challenges, and Solutions,'' \\textit{IEEE Access}, vol. 9, pp. 121111--121128, 2021.\n196: \n197: \\bibitem{bigdata2019}\n198: P. M. M. S. Silva \\textit{et al.}, ``The Big Data Security Challenges in the Era of Cloud Computing,'' \\textit{Computer Networks}, vol. 156, pp. 102--115, 2019.\n199: \n200: \\bibitem{apt_stealth2021}\n201: M. Alshamrani \\textit{et al.}, ``A Survey on Advanced Persistent Threats: Techniques, Solutions, Challenges, and Research Opportunities,'' \\textit{IEEE Communications Surveys \\& Tutorials}, vol. 21, no. 2, pp. 1851--1877, 2021.\n202: \n203: \\bibitem{alertfatigue2022}\n204: S. Hassan, M. A. Saleem, and O. E. Ogu, ``Alert Fatigue in Cybersecurity: A Review,'' \\textit{IEEE Access}, vol. 10, pp. 58632--58645, 2022.\n205: \n206: \\bibitem{welford1962}\n207: B. P. Welford, ``Note on a Method for Calculating Corrected Sums of Squares and Products,'' \\textit{Technometrics}, vol. 4, no. 3, pp. 419--420, 1962.\n208: \n209: \\bibitem{rag2020}\n210: P. Lewis \\textit{et al.}, ``Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks,'' \\textit{Advances in Neural Information Processing Systems (NeurIPS)}, vol. 33, pp. 9459--9474, 2020.\n211: \n212: \\bibitem{langgraph2024}\n213: LangChain AI, ``LangGraph: Multi-Actor, Stateful LLM Applications,'' \\textit{GitHub repository}, 2024. [Online]. Available: https://github.com/langchain-ai/langgraph\n214: \n215: \\bibitem{promptinjection2023}\n216: K. Greshake, S. Abdelnabi, S. Mishra, A. Endres, T. Holz, and M. Fritz, ``More than you've asked for: A Comprehensive Analysis of Novel Prompt Injection Threats to Application-Integrated Large Language Models,'' \\textit{arXiv preprint arXiv:2302.12173}, 2023.\n217: \n218: \\bibitem{nist80061}\n219: P. Cichonski, T. Millar, T. Grance, and K. Scarfone, ``Computer Security Incident Handling Guide,'' NIST Special Publication 800-61 Revision 2, 2012.\n220: \n221: \\bibitem{rrf2009}\n222: G. V. Cormack, C. L. A. Clarke, and S. Buettcher, ``Reciprocal Rank Fusion Outperforms Condorcet and Individual Bootstrap Product Algorithms,'' in \\textit{Proceedings of the 32nd International ACM SIGIR Conference on Research and Development in Information Retrieval}, 2009.\n223: \n224: \\bibitem{watchtower2026}\n225: T. Ravindran \\textit{et al.}, ``Poisoning the Watchtower: Prompt Injection Attacks Against LLM-Augmented Security Operations Through Adversarial Log Content,'' \\textit{arXiv preprint arXiv:2605.24421}, 2026.\n226: \n227: \\bibitem{cyberrag2025}\n228: A. Researcher \\textit{et al.}, ``CyberRAG: An Agentic RAG cyber attack classification and reporting tool,'' \\textit{Future Generation Computer Systems}, vol. 176, p. 108186, 2026.\n229: \n230: \\bibitem{lang2026}\n231: A. Abdennebi \\textit{et al.}, ``LanG -- A Governance-Aware Agentic AI Platform for Unified Security Operations,'' \\textit{arXiv preprint arXiv:2604.05440}, 2026.\n232: \n233: \\bibitem{splunkllm2026}\n234: M. Analyst \\textit{et al.}, ``Policy-Guided Threat Hunting: An LLM enabled Framework with Splunk SOC Triage,'' \\textit{arXiv preprint arXiv:2603.23966}, 2026.\n235: \n236: \\end{thebibliography}\n237: \n238: \\end{document}\n239: \n```\n\nCompile log (tail):\n```\nstring characters out of 5715799\n 545297 words of memory out of 5000000\n 31624 multiletter control sequences out of 15000+600000\n 584049 words of font info for 66 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,11n,65p,1122b,564s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (38 pages, 3521893 bytes).\nPDF statistics:\n 195 PDF objects out of 1000 (max. 8388607)\n 125 compressed objects within 2 object streams\n 0 named destinations out of 1000 (max. 500000)\n 21 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/Binhchuoizzz/AI_Security_Graph"} {"bib": false, "lane": "project", "file_edits": [{"file": "preamble.tex", "search": "% NOTE: `declbox` is defined ONCE, above, on mdframed. A second definition used to\n% sit here built on \\newtcolorbox, left behind when the package was switched from\n% tcolorbox to mdframed to avoid loading TikZ/PGF. Since tcolorbox is no longer\n% loaded, \\newtcolorbox was undefined and the document could not compile at all -\n% this was the fatal error in the first three CI builds. Do not reintroduce a second\n% definition here without also loading the package it needs.", "replace": "% A box for the \"declared\" methodological statements that carry the paper\n\\newtcolorbox{declbox}[1][]{\n enhanced, breakable, colback=gray!5, colframe=gray!55,\n boxrule=0.5pt, arc=1.5pt, left=8pt, right=8pt, top=6pt, bottom=6pt,\n fonttitle=\\bfseries\\small, #1}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["preamble.tex"], "single_shot_visible": true, "error_lines": [{"line": 96, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 99, "text": "You can't use `macro parameter character #' in horizontal mode.", "file": "main.tex", "fileLabel": null}], "log_tail": " 531050 string characters out of 5715799\n 1361109 words of memory out of 5000000\n 52603 multiletter control sequences out of 15000+600000\n 740432 words of font info for 430 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,15n,120p,1197b,1778s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (30 pages, 1141403 bytes).\nPDF statistics:\n 387 PDF objects out of 1000 (max. 8388607)\n 305 compressed objects within 4 object streams\n 154 named destinations out of 1000 (max. 500000)\n 76846 words of extra memory for PDF output out of 89155 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 96: Undefined control sequence.\n- line 99: You can't use `macro parameter character #' in horizontal mode.\n\nProject files:\n- .gitignore\n- README.md\n- appendices/a_reproducibility.tex\n- appendices/b_notation.tex\n- figures/ces_b07_sigma_star_eta.png\n- figures/ces_b08_collapse_map.png\n- figures/ces_b08_sigma_star_lambda.png\n- figures/ces_b08_trace.png\n- figures/ces_b09_collapse_map.png\n- figures/ces_b09_dose_response.png\n- figures/ces_b09_sigma_star_rr.png\n- figures/ces_b09_trace.png\n- figures/ces_b10_aggregates_spread.png\n- figures/ces_b10_domino_trace.png\n- figures/ces_b13_morris_mu_sigma.png\n- figures/ces_b13_sobol_byproducts.png\n- figures/ces_b13_sobol_indices.png\n- figures/ces_sign_frontier.png\n- figures/retention_sweep.png\n- frontmatter.tex\n- main.tex\n- preamble.tex\n- references.bib\n- sections/01_introduction.tex\n- sections/02_literature.tex\n- sections/03_model.tex\n- sections/04_calibration.tex\n- sections/05_protocol.tex\n- sections/06_baseline.tex\n- sections/07_sign_frontier.tex\n- sections/08_stress_tests.tex\n- sections/09_ownership.tex\n- sections/10_sensitivity.tex\n- sections/11_qoi_repair.tex\n- sections/12_discussion.tex\n- sections/13_limitations.tex\n- sections/14_conclusion.tex\n\nOther project files (edit them with ):\n\n`preamble.tex` (full file, line-numbered):\n```\n1: % !TEX root = main.tex\n2: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n3: % PREAMBLE - packages, layout, macros\n4: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n5: \n6: %------------------------------------------------------------ math etc.\n7: % NOTE: amsmath/mathtools MUST be loaded before newtxmath, and amssymb must\n8: % NOT be loaded alongside it (newtxmath already provides the AMS symbols).\n9: \\usepackage{amsmath,mathtools}\n10: \n11: %---------------------------------------------------------------- fonts\n12: \\usepackage[T1]{fontenc}\n13: \\usepackage[utf8]{inputenc}\n14: \\usepackage{newtxtext,newtxmath} % Times-like text and matching math\n15: \\usepackage{microtype}\n16: \n17: %--------------------------------------------------------------- layout\n18: \\usepackage[a4paper,margin=2.7cm]{geometry}\n19: \\usepackage{setspace}\n20: \\onehalfspacing\n21: \n22: %--------------------------------------------------------------- tables\n23: \\usepackage{booktabs}\n24: \\usepackage{tabularx}\n25: \\usepackage{multirow}\n26: \\usepackage{threeparttable}\n27: \n28: %----------------------------------------------------------- draft speed\n29: % Set \\fastdrafttrue to skip rendering the figures: they become empty frames\n30: % of the right size and compilation gets much faster while you edit prose.\n31: % Set it back to \\fastdraftfalse for the final PDF.\n32: \\newif\\iffastdraft\n33: \\fastdraftfalse\n34: \n35: %-------------------------------------------------------------- figures\n36: \\iffastdraft\n37: \\usepackage[draft]{graphicx}\n38: \\else\n39: \\usepackage{graphicx}\n40: \\fi\n41: \\usepackage[labelfont=bf,font=small]{caption}\n42: \\usepackage{subcaption}\n43: \\usepackage{float}\n44: \\graphicspath{{figures/}{results/}{./}}\n45: \n46: %--------------------------------------------------------------- floats\n47: \\usepackage[section]{placeins}\n48: \n49: %---------------------------------------------------------------- lists\n50: \\usepackage{enumitem}\n51: \\setlist{noitemsep,topsep=4pt}\n52: \n53: %------------------------------------------------------------ algorithm\n54: \\usepackage{algorithm}\n55: \\usepackage{algpseudocode}\n56: \n57: %----------------------------------------------------------- boxes/misc\n58: \\usepackage{xcolor}\n59: % mdframed rather than tcolorbox: tcolorbox pulls in the whole of TikZ/PGF,\n60: % which is by far the most expensive thing this document could load and is\n61: % the usual cause of a timeout on Overleaf's free tier. mdframed with\n62: % framemethod=default draws the same boxes with no TikZ at all.\n63: \\usepackage{mdframed}\n64: \\mdfdefinestyle{declstyle}{%\n65: linecolor=gray!55, linewidth=0.5pt,\n66: backgroundcolor=gray!5,\n67: frametitlebackgroundcolor=gray!12,\n68: frametitlefont=\\bfseries\\small,\n69: innerleftmargin=8pt, innerrightmargin=8pt,\n70: innertopmargin=6pt, innerbottommargin=6pt}\n71: \\newenvironment{declbox}[1][]\n72: {\\begin{mdframed}[style=declstyle,#1]}\n73: {\\end{mdframed}}\n74: \n75: %----------------------------------------------------- bibliography\n76: \\usepackage[backend=biber,style=authoryear,natbib=true,maxcitenames=2,\n77: maxbibnames=9,uniquelist=false,giveninits=true,\n78: doi=false,isbn=false,url=false,eprint=false]{biblatex}\n79: \\addbibresource{references.bib}\n80: \n81: %------------------------------------------------------------- hyperref\n82: \\usepackage[colorlinks=true,allcolors=blue!55!black,\n83: pdftitle={Endogenous Investment and Capital Accumulation in a\n84: Disaggregated Keynesian Cross},\n85: pdfsubject={Agent-based macroeconomics}]{hyperref}\n86: \\usepackage[nameinlink,capitalise]{cleveref}\n87: \n88: %------------------------------------------------------ custom commands\n89: \\newcommand{\\sigstar}{\\sigma^{\\ast}}\n90: \\newcommand{\\rhostar}{\\rho^{\\ast}}\n91: \\newcommand{\\Ka}{K}\n92: \\newcommand{\\Ystar}{Y^{\\ast}}\n93: \\DeclareMathOperator{\\clip}{clip}\n94: \n95: % NOTE: `declbox` is defined ONCE, above, on mdframed. A second definition used to\n96: % sit here built on \\newtcolorbox, left behind when the package was switched from\n97: % tcolorbox to mdframed to avoid loading TikZ/PGF. Since tcolorbox is no longer\n98: % loaded, \\newtcolorbox was undefined and the document could not compile at all -\n99: % this was the fatal error in the first three CI builds. Do not reintroduce a second\n100: % definition here without also loading the package it needs.\n101: \n```\n\n`frontmatter.tex` (full file, line-numbered):\n```\n1: % !TEX root = main.tex\n2: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n3: % FRONT MATTER - title, abstract, contents\n4: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n5: \n6: \\title{\\bfseries Endogenous Investment and Capital Accumulation\\\\[2pt]\n7: in a Disaggregated Keynesian Cross\\\\[6pt]\n8: \\large A Normalised-CES Agent-Based Model with an Endogenous\n9: Labour Market}\n10: \n11: \\author{%\n12: Mattia \\textsc{[Surname]}\\thanks{%\n13: Correspondence: \\texttt{[email]}. This paper documents an exploratory\n14: computational model. Every number reported here is either \\emph{measured}\n15: from a committed, reproducible driver script, or explicitly declared as a\n16: design target or convention; the distinction is maintained throughout\n17: (\\cref{sec:method}). Code, data and figures:\n18: \\texttt{[repository URL]}.}\\\\[2pt]\n19: \\normalsize [Institution]}\n20: \n21: \\date{\\today}\n22: \n23: \\maketitle\n24: \n25: \n26: \\begin{abstract}\n27: \\noindent\n28: We extend the disaggregated Keynesian cross of \\citet{Teglio2025} with\n29: endogenous investment and capital accumulation, so that both the demand and\n30: the supply side of a heterogeneous-agent economy are endogenous. Production\n31: is a \\emph{normalised} CES \\citep{KlumpDeLaGrandville2000} with elasticity of\n32: substitution~$\\sigma$; firms hire endogenously subject to three limits, the\n33: wage follows a Blanchflower--Oswald wage curve, investment is financed\n34: internally out of retained earnings, and the model is stock-flow consistent\n35: across the whole parameter space. The central question is Kaleckian: does\n36: higher retention raise output by building capacity (supply), or lower it by\n37: displacing workers and shrinking the wage bill (demand)?\n38: \n39: We find that the answer is governed by~$\\sigma$, but that it is not well posed\n40: as a single label. $Y(\\rho)$ is \\emph{U-shaped}, with a turning point\n41: $\\rhostar$ that rises with~$\\sigma$ and lies inside the swept support in 19 of\n42: 22 conditional cells; the empirically anchored retention rate lies to the\n43: \\emph{left} of that turn for every $\\sigma \\geq 0.5$, so retention depresses\n44: output there and expands it beyond. Read through a single slope, this\n45: structure presents as a \\emph{sign frontier} $\\sigstar \\approx 0.65$ --- a\n46: description we retain, but as a local summary of a curve rather than as a\n47: verdict on the economy. Three separate stabilisation hypotheses --- slower demand\n48: expectations, a balanced-budget unemployment benefit, and that same benefit\n49: as a cushion against firm heterogeneity --- are each \\emph{falsified} by the\n50: data they were designed to test, and all three fail through the same channel:\n51: a wage$\\,\\to\\,$unemployment$\\,\\to\\,$capital-erosion feedback that originates\n52: in the wage curve and is immune to demand-side instruments. This channel,\n53: rather than the sign frontier, is the model's most robust finding.\n54: \n55: A global sensitivity analysis over sixteen parameters then shows that the\n56: headline does \\emph{not} survive marginalisation: wage-led outcomes are the\n57: exception, only $48\\%$ of the empirically defensible space is viable at all,\n58: and viability is governed almost entirely by the depreciation rate $\\delta$\n59: ($S_T \\approx 1.00$) rather than by~$\\sigma$ ($S_T = 0.02$). At the\n60: depreciation rate the data imply for this model's perimeter\n61: ($\\delta \\approx 0.09$), \\emph{zero} of 843 sampled points survive --- a\n62: structural limitation of a capital block without trend growth, not a parameter\n63: to be tuned.\n64: \n65: Finally we show that the quantity of interest was itself part of the result. A\n66: $2\\times2$ experiment, under a verdict rule fixed in advance, separates the two\n67: candidate explanations of the gap between the conditional and marginal\n68: readings, and returns the estimator: measuring a two-point chord across a\n69: U-shaped response rather than a slope over its whole support moves $\\sigstar$\n70: from $0.643$ to $0.447$ on identical data, with non-overlapping intervals.\n71: Re-running the entire sensitivity analysis on the repaired quantity cuts\n72: $P(\\text{wage-led} \\mid \\text{viable})$ from $0.095$ to $0.026$, while leaving\n73: the variance decomposition almost unchanged --- \\emph{which} parameters matter\n74: is robust to the estimator, the \\emph{level} of the headline is not. We also\n75: document, and correct, a reading error of our own: an apparent inversion of\n76: sign between the conditional and marginal analyses, which we had reported as\n77: an open contradiction, was never present in the measurements.\n78: \n79: \\bigskip\n80: \\noindent\\textbf{Keywords:} agent-based macroeconomics; stock-flow\n81: consistency; elasticity of substitution; wage-led growth; global sensitivity\n82: analysis; capital accumulation.\n83: \n84: \\smallskip\n85: \\noindent\\textbf{JEL:} E11, E12, E22, C63, D31.\n86: \\end{abstract}\n87: \n88: \\clearpage\n89: \\tableofcontents\n90: \\clearpage\n91: \n```\n\n`sections/01_introduction.tex` (full file, line-numbered):\n```\n1: % !TEX root = ../main.tex\n2: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n3: % Introduction\n4: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n5: \n6: \\section{Introduction}\n7: \\label{sec:intro}\n8: \n9: The disaggregated Keynesian cross of \\citet{Teglio2025} shows how\n10: heterogeneity in the marginal propensity to consume opens an output gap: when\n11: income accrues to agents who do not spend it, demand leaks out of the\n12: circular flow and the economy settles below capacity. The mechanism is a\n13: demand mechanism, and the supply side plays no active role: capacity is given.\n14: \n15: This paper asks what happens when the supply side is made endogenous in the\n16: most direct way available --- by letting firms invest out of their own\n17: profits and accumulate capital. The extension is not merely additive. Once\n18: capital accumulates \\emph{and} labour is hired endogenously, two channels\n19: that point in opposite directions become active simultaneously:\n20: \n21: \\begin{itemize}\n22: \\item \\textbf{Supply.} Higher retention $\\rho$ means more investment, more\n23: capital, and higher productive capacity. Taken alone, this raises output.\n24: \\item \\textbf{Demand.} In a demand-constrained regime, more capital means\n25: \\emph{fewer workers are needed to serve the same demand}. Employment falls,\n26: the wage bill falls, and because workers have a higher propensity to consume\n27: than capitalists, demand falls with it.\n28: \\end{itemize}\n29: \n30: Which channel dominates is the classical wage-led versus profit-led question\n31: \\citep{BhaduriMarglin1990,LavoieStockhammer2013}, and this paper's first\n32: result is that its answer is not a property of the model but a function of a\n33: single technological parameter: the elasticity of substitution between\n34: capital and labour, $\\sigma$.\n35: \n36: \\paragraph{Three contributions.}\n37: First, we build and calibrate a stock-flow-consistent agent-based model in\n38: which the wage-led/profit-led sign is an \\emph{outcome} rather than an\n39: assumption, and we locate the frontier $\\sigstar$ at which it turns\n40: (\\cref{sec:frontier}). Second, we subject that frontier to four independent\n41: stress tests --- wage flexibility, adaptive expectations, fiscal policy, and\n42: firm heterogeneity --- and report that three explicit stabilisation\n43: hypotheses are falsified, all three through the same\n44: wage$\\,\\to\\,U\\,\\to\\,$capital-erosion channel (\\cref{sec:stress},\n45: \\cref{sec:discussion}). Third, we run a global sensitivity analysis over the\n46: full defensible parameter space and find that the headline result does not\n47: survive marginalisation, that viability is governed by the depreciation rate\n48: rather than by $\\sigma$, and that at the empirically implied depreciation\n49: rate the model does not exist at all (\\cref{sec:sa}).\n50: \n51: \\paragraph{A note on what this paper reports.}\n52: An unusual proportion of what follows is negative. Three hypotheses are\n53: falsified; one headline is shown not to generalise; one contradiction is left\n54: explicitly open. This is deliberate. The project operates under a declared\n55: rule --- restated in \\cref{sec:method} --- that every number entering a table\n56: or a figure must either be measured from a committed, reproducible driver or\n57: be labelled a design target. The rule was adopted after an audit found that\n58: several previously recorded ``results'' were in fact design targets that had\n59: never been measured. Its consequence is that results which contradict the\n60: project's own expectations are reported rather than recalibrated away, and\n61: the reader should read the negative findings as the paper's substance, not\n62: as its residue.\n63: \n64: The remainder is organised as follows. \\Cref{sec:literature} places the model\n65: in the literature. \\Cref{sec:model} presents it. \\Cref{sec:calibration}\n66: documents parameter anchoring, distinguishing estimates from conventions.\n67: \\Cref{sec:method} states the experimental protocol. \\Cref{sec:baseline} to\n68: \\cref{sec:sa} report results. \\Cref{sec:discussion} draws the two\n69: cross-cutting readings, \\cref{sec:limits} states the limitations, and\n70: \\cref{sec:conclusion} concludes.\n71: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: % Endogenous Investment and Capital Accumulation in a Disaggregated\n3: % Keynesian Cross\n4: %\n5: % Compile on Overleaf with: pdfLaTeX + Biber (Menu > Compiler)\n6: %\n7: % This file is deliberately kept to structure only: every package and macro\n8: % lives in preamble.tex, every section in its own file under sections/.\n9: % Sections are pulled in with \\input (not \\include) so that no spurious page\n10: % break is introduced between them.\n11: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n12: \\documentclass[11pt,a4paper]{article}\n13: \n14: \\input{preamble}\n15: \n16: \\begin{document}\n17: \n18: \\input{frontmatter}\n19: \n20: \\input{sections/01_introduction}\n21: \\input{sections/02_literature}\n22: \\input{sections/03_model}\n23: \\input{sections/04_calibration}\n24: \\input{sections/05_protocol}\n25: \\input{sections/06_baseline}\n26: \\input{sections/07_sign_frontier}\n27: \\input{sections/08_stress_tests}\n28: \\input{sections/09_ownership}\n29: \\input{sections/10_sensitivity}\n30: \\input{sections/11_qoi_repair}\n31: \\input{sections/12_discussion}\n32: \\input{sections/13_limitations}\n33: \\input{sections/14_conclusion}\n34: \n35: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n36: % Bibliography\n37: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n38: \\printbibliography[heading=bibintoc,title={References}]\n39: \n40: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n41: % Appendices\n42: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n43: \\appendix\n44: \\input{appendices/a_reproducibility}\n45: \\input{appendices/b_notation}\n46: \n47: \\end{document}\n48: \n```\n\nCompile log (tail):\n```\n531050 string characters out of 5715799\n 1361109 words of memory out of 5000000\n 52603 multiletter control sequences out of 15000+600000\n 740432 words of font info for 430 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,15n,120p,1197b,1778s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (30 pages, 1141403 bytes).\nPDF statistics:\n 387 PDF objects out of 1000 (max. 8388607)\n 305 compressed objects within 4 object streams\n 154 named destinations out of 1000 (max. 500000)\n 76846 words of extra memory for PDF output out of 89155 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n% A box for the \"declared\" methodological statements that carry the paper\n\\newtcolorbox{declbox}[1][]{\n enhanced, breakable, colback=gray!5, colframe=gray!55,\n boxrule=0.5pt, arc=1.5pt, left=8pt, right=8pt, top=6pt, bottom=6pt,\n fonttitle=\\bfseries\\small, #1}\n=======\n% NOTE: `declbox` is defined ONCE, above, on mdframed. A second definition used to\n% sit here built on \\newtcolorbox, left behind when the package was switched from\n% tcolorbox to mdframed to avoid loading TikZ/PGF. Since tcolorbox is no longer\n% loaded, \\newtcolorbox was undefined and the document could not compile at all -\n% this was the fatal error in the first three CI builds. Do not reintroduce a second\n% definition here without also loading the package it needs.\n>>>>>>> REPLACE\n", "id": "github_MattiaSaramin__endogenous-investment-abm__7c4874f", "doc": "github_multi/MattiaSaramin__endogenous-investment-abm__7c4874f", "mutation": "real", "source": "github", "repo": "MattiaSaramin/endogenous-investment-abm", "sha": "7c4874ff6154449b797cb638be60005b5193bb4b", "parent_sha": "85f865000bbf4b931d30b7be0b61b2200dda1cad", "license": "MIT", "url": "https://github.com/MattiaSaramin/endogenous-investment-abm/commit/7c4874ff6154449b797cb638be60005b5193bb4b", "changed_files": ["preamble.tex"], "original_root": "main.tex", "n_files": 20, "engine": "pdflatex", "error_category": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 96: Undefined control sequence.\n- line 99: You can't use `macro parameter character #' in horizontal mode.\n\nProject files:\n- .gitignore\n- README.md\n- appendices/a_reproducibility.tex\n- appendices/b_notation.tex\n- figures/ces_b07_sigma_star_eta.png\n- figures/ces_b08_collapse_map.png\n- figures/ces_b08_sigma_star_lambda.png\n- figures/ces_b08_trace.png\n- figures/ces_b09_collapse_map.png\n- figures/ces_b09_dose_response.png\n- figures/ces_b09_sigma_star_rr.png\n- figures/ces_b09_trace.png\n- figures/ces_b10_aggregates_spread.png\n- figures/ces_b10_domino_trace.png\n- figures/ces_b13_morris_mu_sigma.png\n- figures/ces_b13_sobol_byproducts.png\n- figures/ces_b13_sobol_indices.png\n- figures/ces_sign_frontier.png\n- figures/retention_sweep.png\n- frontmatter.tex\n- main.tex\n- preamble.tex\n- references.bib\n- sections/01_introduction.tex\n- sections/02_literature.tex\n- sections/03_model.tex\n- sections/04_calibration.tex\n- sections/05_protocol.tex\n- sections/06_baseline.tex\n- sections/07_sign_frontier.tex\n- sections/08_stress_tests.tex\n- sections/09_ownership.tex\n- sections/10_sensitivity.tex\n- sections/11_qoi_repair.tex\n- sections/12_discussion.tex\n- sections/13_limitations.tex\n- sections/14_conclusion.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: % Endogenous Investment and Capital Accumulation in a Disaggregated\n3: % Keynesian Cross\n4: %\n5: % Compile on Overleaf with: pdfLaTeX + Biber (Menu > Compiler)\n6: %\n7: % This file is deliberately kept to structure only: every package and macro\n8: % lives in preamble.tex, every section in its own file under sections/.\n9: % Sections are pulled in with \\input (not \\include) so that no spurious page\n10: % break is introduced between them.\n11: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n12: \\documentclass[11pt,a4paper]{article}\n13: \n14: \\input{preamble}\n15: \n16: \\begin{document}\n17: \n18: \\input{frontmatter}\n19: \n20: \\input{sections/01_introduction}\n21: \\input{sections/02_literature}\n22: \\input{sections/03_model}\n23: \\input{sections/04_calibration}\n24: \\input{sections/05_protocol}\n25: \\input{sections/06_baseline}\n26: \\input{sections/07_sign_frontier}\n27: \\input{sections/08_stress_tests}\n28: \\input{sections/09_ownership}\n29: \\input{sections/10_sensitivity}\n30: \\input{sections/11_qoi_repair}\n31: \\input{sections/12_discussion}\n32: \\input{sections/13_limitations}\n33: \\input{sections/14_conclusion}\n34: \n35: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n36: % Bibliography\n37: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n38: \\printbibliography[heading=bibintoc,title={References}]\n39: \n40: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n41: % Appendices\n42: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n43: \\appendix\n44: \\input{appendices/a_reproducibility}\n45: \\input{appendices/b_notation}\n46: \n47: \\end{document}\n48: \n```\n\nCompile log (tail):\n```\n531050 string characters out of 5715799\n 1361109 words of memory out of 5000000\n 52603 multiletter control sequences out of 15000+600000\n 740432 words of font info for 430 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,15n,120p,1197b,1778s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (30 pages, 1141403 bytes).\nPDF statistics:\n 387 PDF objects out of 1000 (max. 8388607)\n 305 compressed objects within 4 object streams\n 154 named destinations out of 1000 (max. 500000)\n 76846 words of extra memory for PDF output out of 89155 (max. 10000000)\n```", "repo_url": "https://github.com/MattiaSaramin/endogenous-investment-abm"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}& \t\t\t\t\t\t\t& \\checkmark \\\\", "replace": " \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t& \t\t\t\t\t\t\t& \\checkmark \\\\", "type": "real"}, {"file": "main.tex", "search": " \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t&\t\t\t \\\\", "replace": " \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t&\t\t\t \\\\", "type": "real"}, {"file": "main.tex", "search": "\t\t\\item Timeline for a specific subject %(see Figure \\ref{fig:timeline})%, perhaps re-playing the experiment in X times realtime. (If actual realtime, you could replay the audio...)", "replace": "\t\t\\item Timeline for a specific subject (see Figure \\ref{fig:timeline})%, perhaps re-playing the experiment in X times realtime. (If actual realtime, you could replay the audio...)", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 164, "text": "Extra alignment tab has been changed to \\cr.", "file": "main.tex", "fileLabel": null}], "log_tail": ".\n ) \nHere is how much of TeX's memory you used:\n 12454 strings out of 473190\n 201793 string characters out of 5715799\n 660995 words of memory out of 5000000\n 35520 multiletter control sequences out of 15000+600000\n 607080 words of font info for 91 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,1326b,426s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (4 pages, 159112 bytes).\nPDF statistics:\n 94 PDF objects out of 1000 (max. 8388607)\n 64 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 164: Extra alignment tab has been changed to \\cr.\n\nProject files:\n- WAC2016.bib\n- cc.png\n- main.tex\n- sig-alternate.cls\n- waccopyright.sty\n\nOther project files (edit them with ):\n\n`sig-alternate.cls` (head and lines matching the log, line-numbered):\n```\n...\n50: \\def\\fileversion{v2.9} % for ACM's tracking purposes\n51: \\def\\filedate{August 12, 2013} % Gerry Murray's tracking data\n52: \\def\\docdate {\\filedate}\n53: \\usepackage{epsfig}\n54: \\usepackage{amssymb}\n55: \\usepackage{amsmath}\n56: \\usepackage{amsfonts}\n...\n121: \\typeout{Document Class 'sig-alternate' <9th June '13>. Modified by\n122: G.K.M. Tobin/Gerry Murray/Boris Veytsman}\n123: \\typeout{Based in part upon document Style `acmconf' <22 May 89>. Hacked 4/91 by}\n124: \\typeout{shivers@cs.cmu.edu, 4/93 by theobald@cs.mcgill.ca}\n125: \\typeout{Excerpts were taken from (Journal Style) 'esub2acm.cls'.}\n126: \\typeout{****** Bugs/comments/suggestions/technicalities to Gerry Murray -- murray@hq.acm.org ******}\n127: \\typeout{Questions on the style, SIGS policies, etc. to Adrienne Griscti griscti@acm.org}\n128: \n129: \n130: \\let\\@concepts\\@empty\n...\n132: \\RequirePackage{comment}\n133: \\excludecomment{CCSXML}\n134: \n...\n140: \\newcommand\\ccsdesc[2][100]{%\n141: \\ccsdesc@parse#1~#2~}\n...\n145: \\def\\ccsdesc@parse#1~#2~#3~{%\n146: \\expandafter\\ifx\\csname CCS@#2\\endcsname\\relax\n147: \\expandafter\\gdef\\csname CCS@#2\\endcsname{\\textbullet\\textbf{#2} $\\to$ }%\n148: \\g@addto@macro{\\@concepts}{\\csname CCS@#2\\endcsname}\\fi\n149: \\expandafter\\g@addto@macro\\expandafter{\\csname CCS@#2\\endcsname}{%\n150: \\ifnum#1>499\\textbf{#3; }\\else\n151: \\ifnum#1>299\\textit{#3; }\\else\n152: #3; \\fi\\fi}}\n```\n\n`WAC2016.bib` (head and lines matching the log, line-numbered):\n```\n...\n3: \n...\n5: \n6: \n...\n8: \n9: \n10: \n11: @inproceedings{mushram,\n12: \tAuthor = {Emmanuel Vincent and Maria G. Jafari and Mark D. Plumbley},\n13: \tBooktitle = {UK ICA Research Network Workshop},\n14: \tDate-Added = {2015-10-12 16:58:35 +0000},\n15: \tDate-Modified = {2015-10-12 16:58:35 +0000},\n16: \tKeywords = {perceptual evaluation},\n17: \tTitle = {Preliminary guidelines for subjective evalutation of audio source separation algorithms},\n18: \tYear = {2006},\n19: \tBdsk-File-1 = {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}}\n20: \n21: @conference{scale,\n22: \tAuthor = {Arnau Vazquez Giner},\n23: \tBooktitle = {AIA/DAGA Conference on Acoustics, Merano (Italy)},\n24: \tDate-Added = {2015-10-12 16:55:54 +0000},\n25: \tDate-Modified = {2015-10-12 16:55:54 +0000},\n26: \tKeywords = {perceptual evaluation},\n27: \tTitle = {Scale - A Software Tool for Listening Experiments},\n28: \tYear = {2013},\n29: \tBdsk-File-1 = {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}}\n30: \n31: @conference{whisper,\n32: \tAuthor = {Simon Ciba and Andr{\\'e} Wlodarski and Hans-Joachim Maempel},\n33: \tBooktitle = {126th Convention of the Audio Engineering Society},\n34: \tDate-Added = {2015-10-12 16:55:54 +0000},\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{sig-alternate}\n2: \\usepackage{hyperref}\t% make links (like references, links to Sections, ...) clickable\n3: \\usepackage{enumitem}\t% tighten itemize etc by appending '[noitemsep,nolistsep]'\n4: \\usepackage{cleveref}\n5: \n6: \\graphicspath{{img/}} % put the images in this folder\n7: \n8: \\begin{document}\n9: \n10: % Copyright\n11: \\setcopyright{waclicense}\n12: \n13: \n14: %% DOI\n15: %\\doi{10.475/123_4}\n16: %\n17: %% ISBN\n18: %\\isbn{123-4567-24-567/08/06}\n19: %\n20: %%Conference\n21: %\\conferenceinfo{PLDI '13}{June 16--19, 2013, Seattle, WA, USA}\n22: %\n23: %\\acmPrice{\\$15.00}\n24: \n25: %\n26: % --- Author Metadata here ---\n27: \\conferenceinfo{Web Audio Conference WAC-2016,}{April 4--6, 2016, Atlanta, USA}\n28: \\CopyrightYear{2016} % Allows default copyright year (20XX) to be over-ridden - IF NEED BE.\n29: %\\crdata{0-12345-67-8/90/01} % Allows default copyright data (0-89791-88-6/97/05) to be over-ridden - IF NEED BE.\n30: % --- End of Author Metadata ---\n31: \n32: \\title{Web Audio Evaluation Tool: A framework for subjective assessment of audio}\n33: %\\subtitle{[Extended Abstract]\n34: %\\titlenote{A full version of this paper is available as\n35: %\\textit{Author's Guide to Preparing ACM SIG Proceedings Using\n36: %\\LaTeX$2_\\epsilon$\\ and BibTeX} at\n37: %\\texttt{www.acm.org/eaddress.htm}}}\n38: %\n39: % You need the command \\numberofauthors to handle the 'placement\n40: % and alignment' of the authors beneath the title.\n41: %\n42: % For aesthetic reasons, we recommend 'three authors at a time'\n43: % i.e. three 'name/affiliation blocks' be placed beneath the title.\n44: %\n45: % NOTE: You are NOT restricted in how many 'rows' of\n46: % \"name/affiliations\" may appear. We just ask that you restrict\n47: % the number of 'columns' to three.\n48: %\n49: % Because of the available 'opening page real-estate'\n50: % we ask you to refrain from putting more than six authors\n51: % (two rows with three columns) beneath the article title.\n52: % More than six makes the first-page appear very cluttered indeed.\n53: %\n54: % Use the \\alignauthor commands to handle the names\n55: % and affiliations for an 'aesthetic maximum' of six authors.\n56: % Add names, affiliations, addresses for\n57: % the seventh etc. author(s) as the argument for the\n58: % \\additionalauthors command.\n59: % These 'additional authors' will be output/set for you\n60: % without further effort on your part as the last section in\n61: % the body of your article BEFORE References or any Appendices.\n62: \n63: % FIVE authors instead of four, to leave space between first two authors.\n64: \\numberofauthors{5} % in this sample file, there are a *total*\n65: % of EIGHT authors. SIX appear on the 'first-page' (for formatting\n66: % reasons) and the remaining two appear in the \\additionalauthors section.\n67: %\n68: \\author{\n69: % You can go ahead and credit any number of authors here,\n70: % e.g. one 'row of three' or two rows (consisting of one row of three\n71: % and a second row of one, two or three).\n72: %\n73: % The command \\alignauthor (no curly braces needed) should\n74: % precede each author name, affiliation/snail-mail address and\n75: % e-mail address. Additionally, tag each line of\n76: % affiliation/address with \\affaddr, and tag the\n77: % e-mail address with \\email.\n78: %\n79: % 1st. author\n80: \\alignauthor Nicholas Jillings\\\\\n81: \\email{n.g.r.jillings@se14.qmul.ac.uk}\n82: % dummy author for nicer spacing\n83: \\alignauthor \n84: % 2nd. author\n85: \\alignauthor Brecht De Man\\\\\n86: \\email{b.deman@qmul.ac.uk}\n87: \\and % use '\\and' if you need 'another row' of author names\n88: % 3rd. author\n89: \\alignauthor David Moffat\\\\\n90: \\email{d.j.moffat@qmul.ac.uk}\n91: % 4th. author\n92: \\alignauthor Joshua D. Reiss\\\\\n93: \\email{joshua.reiss@qmul.ac.uk}\n94: \\and % new line for address\n95: \\affaddr{Centre for Digital Music}\\\\\n96: \\affaddr{School of Electronic Engineering and Computer Science}\\\\\n97: \\affaddr{Queen Mary University of London}\\\\\n98: \\affaddr{Mile End Road,}\n99: \\affaddr{London E1 4NS}\\\\\n100: \\affaddr{United Kingdom}\\\\\n101: }\n102: %Centre for Digital Music, School of Electronic Engineering and Computer Science, Queen Mary University of London\n103: %% 5th. author\n104: %\\alignauthor Sean Fogarty\\\\\n105: % \\affaddr{NASA Ames Research Center}\\\\\n106: % \\affaddr{Moffett Field}\\\\\n107: % \\email{fogartys@amesres.org}\n108: %% 6th. author\n109: %\\alignauthor Charles Palmer\\\\\n110: % \\affaddr{Palmer Research Laboratories}\\\\\n111: % \\affaddr{8600 Datapoint Drive}\\\\\n112: % \\email{cpalmer@prl.com}\n113: %}\n114: % There's nothing stopping you putting the seventh, eighth, etc.\n115: % author on the opening page (as the 'third row') but we ask,\n116: % for aesthetic reasons that you place these 'additional authors'\n117: % in the \\additional authors block, viz.\n118: %\\additionalauthors{Additional authors: John Smith (The Th{\\o}rv{\\\"a}ld Group,\n119: %email: {\\texttt{jsmith@affiliation.org}}) and Julius P.~Kumquat\n120: %(The Kumquat Consortium, email: {\\texttt{jpkumquat@consortium.net}}).}\n121: \\date{1 October 2015}\n122: % Just remember to make sure that the TOTAL number of authors\n123: % is the number that will appear on the first page PLUS the\n124: % number that will appear in the \\additionalauthors section.\n125: \n126: \\maketitle\n127: \\begin{abstract}\n128: Here comes the abstract. \n129: \\end{abstract}\n130: \n131: \n132: \\section{Introduction}\n133: \n134: \t% Listening tests/perceptual audio evaluation: what are they, why are they important\n135: \t% As opposed to limited scope of WAC15 paper: also musical features, realism of sound effects / sound synthesis, performance of source separation and other algorithms... \n136: \tPerceptual evaluation of audio, in the form of listening tests, is a powerful way to assess anything from audio codec quality over realism of sound synthesis to the performance of source separation, automated music production and other auditory evaluations.\n137: \tIn less technical areas, the framework of a listening test can be used to measure emotional response to music or test cognitive abilities. \n138: \t% maybe some references? If there's space.\n139: \n140: \t% check out http://link.springer.com/article/10.1007/s10055-015-0270-8 - only paper that cited WAC15 paper\n141: \n142: \t% Why difficult? Challenges? What constitutes a good interface?\n143: \t% Technical, interfaces, user friendliness, reliability \n144: \tSeveral applications for performing perceptual listening tests currently exist, as can be seen in Table \\ref{tab:toolboxes}. The Web Audio Evaluation Toolbox stands out as it does not require proprietary software or a specific platform and provides a wide range of interface and test types in one user friendly environment. Furthermore, it does not require any progamming experience as any test based on the default test types can be configured in the browser as well. Note that the design of an effective listening test further poses many challenges unrelated to interface design, which are beyond the scope of this paper \\cite{bech}. \n145: \n146: \t% Why in the browser? \n147: \tWeb Audio API has important features for performing perceptual tests including sample level manipulation of audio streams \\cite{schoeffler2015mushra}, synchronous playback and flexible playback. Being in the browser also allows leveraging the flexible object oriented JavaScript format and native support for web documents, such as the extensible markup language (XML) which is used for configuration and test result files. Using the web also reduces deployment requirements to a basic web server with advanced functionality such as test collection and automatic processing using PHP. As recruiting participants can be very time-consuming, and as for some tests a large number of participants is needed, browser-based tests \\cite{schoeffler2015mushra}. However, to our knowledge, no tool currently exists that allows the creation of a remotely accessible listening test. \n148: \n149: \tBoth BeaqleJS \\cite{beaqlejs} and mushraJS\\footnote{https://github.com/akaroice/mushraJS} also operate in the browser, however BeaqleJS does not make use of the Web Audio API and therefore lacks arbitrary manipulation of audio stream samples, and neither offer an adequately wide choice of test designs for them to be useful to many researchers. %requires programming knowledge?... \n150: \t\n151: \t% only browser-based? \n152: \t\\begin{table*}[ht]\n153: \\caption{Table with existing listening test platforms and their features}\n154: \\begin{center}\n155: \t\\begin{tabular}{|*{6}{l|}}\n156: \t\t\\hline\n157: \t\t\\textbf{Name} \t& \\textbf{Ref.} \t& \\textbf{Language} \t& \\textbf{Interfaces} \t\t\t& \\textbf{Remote} \t\t\t& \\textbf{All UI} \t\\\\\n158: \t\t\\hline\n159: \t\tAPE \t\t\t& \\cite{ape}\t\t& MATLAB\t\t\t\t& multi-stimulus, 1 axis per attribute \t& \t\t\t\t\t& \t\t\t \\\\\n160: \t\tBeaqleJS\t\t& \\cite{beaqlejs}\t& JavaScript\t\t\t& ABX, MUSHRA \t\t\t\t\t& (not natively supported) \t& \t\t\t \\\\\n161: \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t& \t\t\t\t\t\t\t& \\checkmark \\\\\n162: \t\tmushraJS\t\t& \t\t\t\t\t& JavaScript \t\t\t& MUSHRA \t\t\t\t\t\t& \\checkmark\t\t\t\t& \t \\\\\n163: \t\tMUSHRAM\t\t\t& \\cite{mushram}\t& MATLAB\t\t\t\t& MUSHRA\t\t\t\t\t\t& \t\t\t\t\t\t\t& \t\t\t \\\\\n164: \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t&\t\t\t \\\\\n165: \t\tWhisPER\t\t\t& \\cite{whisper}\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t& \\checkmark \\\\\n166: \t\t\\textbf{WAET}\t& \\cite{waet}\t\t& JavaScript\t\t\t& \\textbf{All of the above}\t\t\t\t& \\checkmark\t\t\t\t& \\checkmark \\\\\n167: \t\t\\hline\n168: \t\\end{tabular}\n169: \\end{center}\n170: \\label{tab:toolboxes}\n171: \\end{table*}%\n172: \n173: \\begin{table*}[ht]\n174: \\caption{Table with interfaces and which toolboxes support them}\n175: \\begin{center}\n176: \t\\begin{tabular}{|*{5}{l|}}\n177: \t\t\\hline\n178: \t\t\\textbf{Interface} \t\t\t\t\t\t\t\t\t& \\textbf{HULTI-GEN} \t& \\textbf{Scale} \t& \\textbf{WhisPER} \t& \\textbf{WAET} \\\\\n179: \t\t\\hline\n180: \t\tMUSHRA (ITU-R BS. 1534)\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark \t\\\\\n181: \t\tRank scale \t\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n182: \t\t\tLikert scale\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n183: \t\t\tABC/HR (ITU-R BS. 1116)\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n184: \t\t\t-50 to 50 Bipolar with Ref\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \t\t\t\t\t& \\checkmark\t\\\\\n185: \t\t\tAbsolute Category Rating (ACR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n186: \t\t\tDegredation Category Rating (DCR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n187: \t\t\tComparison Category Rating (CCR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n188: \t\t\t9 Point Hedonic Category Rating Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n189: \t\t\tITU-R 5 Point Continuous Impairment Scale\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n190: \t\t\tPairwise Comparison / AB test\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n191: \t\t\tMulti-attribute ratings\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n192: \t\t\tABX Test\t\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n193: \t\t\tAdaptive psychophysical methods\t\t\t\t\t\t& \t\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n194: \t\t\tRepertory Grid Technique (RGT)\t\t\t\t\t\t&\t\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n195: \t\t\tSemantic differential\t\t\t\t\t\t\t\t&\t\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n196: \t\t\tn-Alternative Forced choice \t\t\t\t\t\t&\t\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\t&\t\t\t\t\\\\\n197: \n198: \t\t\\hline\n199: \t\\end{tabular}\n200: \\end{center}\n201: \\label{tab:toolbox_interfaces}\n202: \\end{table*}%\n203: \n204: % \n205: %Selling points: remote tests, visualisaton, create your own test in the browser, many interfaces, few/no dependencies, flexibility\n206: \n207: To meet the need for a cross-platform, versatile and easy-to-use listening test tool, we previously developed the Web Audio Evaluation Tool \\cite{waet} which at the time of its inception was capable of running a listening test in the browser from an XML configuration file, and storing an XML file as well, with one particular interface. We have now expanded this into a tool with which a wide range of listening test types can easily be constructed and set up remotely, without any need for manually altering code or configuration files, and which allows visualisation of the collected results in the browser. In this paper, we discuss these different aspects and explore which future improvements would be possible. Specifically, in Section \\ref{sec:architecture} we cover the general implementation aspects, with a focus on the Web Audio API, followed by a discussion of the requirements for successful remote tests in Section \\ref{sec:remote}. Section \\ref{sec:interfaces} describes the various interfaces the tool supports, as well as how to keep this manageable. Finally, in Section \\ref{sec:analysis} we provide an overview of the analysis capabilities in the browser, before summarising our findings and listing future research directions in Section \\ref{sec:conclusion}. \n208: \n209: \\begin{comment}\n210: % MEETING 8 OCTOBER\n211: \\subsection{Meeting 8 October}\n212: \\begin{itemize}\n213: \t\\item Do we manipulate audio?\\\\\n214: \t \t\\begin{itemize}\n215: \t \t\t\\item Add loudness equalisation? (test\\_create.html) Tag with gains. \n216: \t \t\t\\item Add volume slider? \n217: \t \t\t\\item Cross-fade (in interface node): default 0, number of seconds\n218: \t \t\t\\item Also: we use the playback buffer to present metrics of which portion is listened to\n219: \t \t\\end{itemize}\n220: \t \\item Logging system information: whichever are possible (justify others)\n221: \t \\item Input streams as audioelements\n222: \t \t\\item Capture microphone to estimate loudness (especially Macbook)\n223: \t \t\\item Test page (in-built oscillators): left-right calibration, ramp up test tone until you hear it; optional compensating EQ (future work implementing own filters) --> Highlight issues! \n224: \t \t\\item Record IP address (PHP function, grab and append to XML file)\n225: \t \t\\item Expand anchor/reference options\n226: \t \t\\item AB / ABX\n227: \\end{itemize}\n228: \n229: \\subsubsection{Issues}\n230: \\begin{itemize}\n231: \t\\item Filters not consistent (Nick to test across browsers)\n232: \t\\item Playback audiobuffers need to be destroyed and rebuilt each time\n233: \t\\item Can't get channel data, hardware input/output... \n234: \\end{itemize}\n235: \\end{comment}\n236: \t\n237: \\section{Architecture} % title? 'back end'? % NICK\n238: \t\\label{sec:architecture}\n239: \n240: While WAET uses a sparse subset of the Web Audio API functionality, its performance comes directly from using the Web Audio API for audio playback. Listening tests can convey large amounts of information other than obtaining the perceptual relationship between the audio fragments. Specifically, with WAET one can obtain which parts of the audio fragments were listened to and when, at what point in the audio stream the participant switched to a different fragment, and how a fragment's rating was adjusted over time within a session, to name a few. Not only does this allow to evaluate a wealth of perceptual aspects, but it helps detect poor participants whose results are potentially not representative. \n241: \n242: One of the key initial design parameters for WAET is to make the tool as open as possible to non-programmers and to this end the tool has been designed in such a way that all of the user modifiable options are included in a single XML document. This document is loaded up automatically by the web page and the JavaScript code parses and loads any extra resources required to create the test.\n243: \n244: The specification document also contains the URL of the audio fragments for each test page. These fragments are downloaded asynchronously an\n```\n\nCompile log (tail):\n```\n.\n ) \nHere is how much of TeX's memory you used:\n 12454 strings out of 473190\n 201793 string characters out of 5715799\n 660995 words of memory out of 5000000\n 35520 multiletter control sequences out of 15000+600000\n 607080 words of font info for 91 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,1326b,426s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (4 pages, 159112 bytes).\nPDF statistics:\n 94 PDF objects out of 1000 (max. 8388607)\n 64 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\t\t\\item Timeline for a specific subject (see Figure \\ref{fig:timeline})%, perhaps re-playing the experiment in X times realtime. (If actual realtime, you could replay the audio...)\n=======\n\t\t\\item Timeline for a specific subject %(see Figure \\ref{fig:timeline})%, perhaps re-playing the experiment in X times realtime. (If actual realtime, you could replay the audio...)\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t&\t\t\t \\\\\n=======\n \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t&\t\t\t \\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t& \t\t\t\t\t\t\t& \\checkmark \\\\\n=======\n \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}& \t\t\t\t\t\t\t& \\checkmark \\\\\n>>>>>>> REPLACE\n", "id": "github_WQVH3__dissertation__62d5b52", "doc": "github_multi/WQVH3__dissertation__62d5b52", "mutation": "real", "source": "github", "repo": "WQVH3/dissertation", "sha": "62d5b52178ce3f48559a660537da83b74c43be68", "parent_sha": "17a573b5dac90d750937d67e038752d461a9165f", "license": "GPL-3.0", "url": "https://github.com/WQVH3/dissertation/commit/62d5b52178ce3f48559a660537da83b74c43be68", "changed_files": ["WAC2016.tex"], "original_root": "WAC2016.tex", "n_files": 4, "engine": "pdflatex", "error_category": "Extra alignment tab has been changed to \\CS.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 164: Extra alignment tab has been changed to \\cr.\n\nProject files:\n- WAC2016.bib\n- cc.png\n- main.tex\n- sig-alternate.cls\n- waccopyright.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{sig-alternate}\n2: \\usepackage{hyperref}\t% make links (like references, links to Sections, ...) clickable\n3: \\usepackage{enumitem}\t% tighten itemize etc by appending '[noitemsep,nolistsep]'\n4: \\usepackage{cleveref}\n5: \n6: \\graphicspath{{img/}} % put the images in this folder\n7: \n8: \\begin{document}\n9: \n10: % Copyright\n11: \\setcopyright{waclicense}\n12: \n13: \n14: %% DOI\n15: %\\doi{10.475/123_4}\n16: %\n17: %% ISBN\n18: %\\isbn{123-4567-24-567/08/06}\n19: %\n20: %%Conference\n21: %\\conferenceinfo{PLDI '13}{June 16--19, 2013, Seattle, WA, USA}\n22: %\n23: %\\acmPrice{\\$15.00}\n24: \n25: %\n26: % --- Author Metadata here ---\n27: \\conferenceinfo{Web Audio Conference WAC-2016,}{April 4--6, 2016, Atlanta, USA}\n28: \\CopyrightYear{2016} % Allows default copyright year (20XX) to be over-ridden - IF NEED BE.\n29: %\\crdata{0-12345-67-8/90/01} % Allows default copyright data (0-89791-88-6/97/05) to be over-ridden - IF NEED BE.\n30: % --- End of Author Metadata ---\n31: \n32: \\title{Web Audio Evaluation Tool: A framework for subjective assessment of audio}\n33: %\\subtitle{[Extended Abstract]\n34: %\\titlenote{A full version of this paper is available as\n35: %\\textit{Author's Guide to Preparing ACM SIG Proceedings Using\n36: %\\LaTeX$2_\\epsilon$\\ and BibTeX} at\n37: %\\texttt{www.acm.org/eaddress.htm}}}\n38: %\n39: % You need the command \\numberofauthors to handle the 'placement\n40: % and alignment' of the authors beneath the title.\n41: %\n42: % For aesthetic reasons, we recommend 'three authors at a time'\n43: % i.e. three 'name/affiliation blocks' be placed beneath the title.\n44: %\n45: % NOTE: You are NOT restricted in how many 'rows' of\n46: % \"name/affiliations\" may appear. We just ask that you restrict\n47: % the number of 'columns' to three.\n48: %\n49: % Because of the available 'opening page real-estate'\n50: % we ask you to refrain from putting more than six authors\n51: % (two rows with three columns) beneath the article title.\n52: % More than six makes the first-page appear very cluttered indeed.\n53: %\n54: % Use the \\alignauthor commands to handle the names\n55: % and affiliations for an 'aesthetic maximum' of six authors.\n56: % Add names, affiliations, addresses for\n57: % the seventh etc. author(s) as the argument for the\n58: % \\additionalauthors command.\n59: % These 'additional authors' will be output/set for you\n60: % without further effort on your part as the last section in\n61: % the body of your article BEFORE References or any Appendices.\n62: \n63: % FIVE authors instead of four, to leave space between first two authors.\n64: \\numberofauthors{5} % in this sample file, there are a *total*\n65: % of EIGHT authors. SIX appear on the 'first-page' (for formatting\n66: % reasons) and the remaining two appear in the \\additionalauthors section.\n67: %\n68: \\author{\n69: % You can go ahead and credit any number of authors here,\n70: % e.g. one 'row of three' or two rows (consisting of one row of three\n71: % and a second row of one, two or three).\n72: %\n73: % The command \\alignauthor (no curly braces needed) should\n74: % precede each author name, affiliation/snail-mail address and\n75: % e-mail address. Additionally, tag each line of\n76: % affiliation/address with \\affaddr, and tag the\n77: % e-mail address with \\email.\n78: %\n79: % 1st. author\n80: \\alignauthor Nicholas Jillings\\\\\n81: \\email{n.g.r.jillings@se14.qmul.ac.uk}\n82: % dummy author for nicer spacing\n83: \\alignauthor \n84: % 2nd. author\n85: \\alignauthor Brecht De Man\\\\\n86: \\email{b.deman@qmul.ac.uk}\n87: \\and % use '\\and' if you need 'another row' of author names\n88: % 3rd. author\n89: \\alignauthor David Moffat\\\\\n90: \\email{d.j.moffat@qmul.ac.uk}\n91: % 4th. author\n92: \\alignauthor Joshua D. Reiss\\\\\n93: \\email{joshua.reiss@qmul.ac.uk}\n94: \\and % new line for address\n95: \\affaddr{Centre for Digital Music}\\\\\n96: \\affaddr{School of Electronic Engineering and Computer Science}\\\\\n97: \\affaddr{Queen Mary University of London}\\\\\n98: \\affaddr{Mile End Road,}\n99: \\affaddr{London E1 4NS}\\\\\n100: \\affaddr{United Kingdom}\\\\\n101: }\n102: %Centre for Digital Music, School of Electronic Engineering and Computer Science, Queen Mary University of London\n103: %% 5th. author\n104: %\\alignauthor Sean Fogarty\\\\\n105: % \\affaddr{NASA Ames Research Center}\\\\\n106: % \\affaddr{Moffett Field}\\\\\n107: % \\email{fogartys@amesres.org}\n108: %% 6th. author\n109: %\\alignauthor Charles Palmer\\\\\n110: % \\affaddr{Palmer Research Laboratories}\\\\\n111: % \\affaddr{8600 Datapoint Drive}\\\\\n112: % \\email{cpalmer@prl.com}\n113: %}\n114: % There's nothing stopping you putting the seventh, eighth, etc.\n115: % author on the opening page (as the 'third row') but we ask,\n116: % for aesthetic reasons that you place these 'additional authors'\n117: % in the \\additional authors block, viz.\n118: %\\additionalauthors{Additional authors: John Smith (The Th{\\o}rv{\\\"a}ld Group,\n119: %email: {\\texttt{jsmith@affiliation.org}}) and Julius P.~Kumquat\n120: %(The Kumquat Consortium, email: {\\texttt{jpkumquat@consortium.net}}).}\n121: \\date{1 October 2015}\n122: % Just remember to make sure that the TOTAL number of authors\n123: % is the number that will appear on the first page PLUS the\n124: % number that will appear in the \\additionalauthors section.\n125: \n126: \\maketitle\n127: \\begin{abstract}\n128: Here comes the abstract. \n129: \\end{abstract}\n130: \n131: \n132: \\section{Introduction}\n133: \n134: \t% Listening tests/perceptual audio evaluation: what are they, why are they important\n135: \t% As opposed to limited scope of WAC15 paper: also musical features, realism of sound effects / sound synthesis, performance of source separation and other algorithms... \n136: \tPerceptual evaluation of audio, in the form of listening tests, is a powerful way to assess anything from audio codec quality over realism of sound synthesis to the performance of source separation, automated music production and other auditory evaluations.\n137: \tIn less technical areas, the framework of a listening test can be used to measure emotional response to music or test cognitive abilities. \n138: \t% maybe some references? If there's space.\n139: \n140: \t% check out http://link.springer.com/article/10.1007/s10055-015-0270-8 - only paper that cited WAC15 paper\n141: \n142: \t% Why difficult? Challenges? What constitutes a good interface?\n143: \t% Technical, interfaces, user friendliness, reliability \n144: \tSeveral applications for performing perceptual listening tests currently exist, as can be seen in Table \\ref{tab:toolboxes}. The Web Audio Evaluation Toolbox stands out as it does not require proprietary software or a specific platform and provides a wide range of interface and test types in one user friendly environment. Furthermore, it does not require any progamming experience as any test based on the default test types can be configured in the browser as well. Note that the design of an effective listening test further poses many challenges unrelated to interface design, which are beyond the scope of this paper \\cite{bech}. \n145: \n146: \t% Why in the browser? \n147: \tWeb Audio API has important features for performing perceptual tests including sample level manipulation of audio streams \\cite{schoeffler2015mushra}, synchronous playback and flexible playback. Being in the browser also allows leveraging the flexible object oriented JavaScript format and native support for web documents, such as the extensible markup language (XML) which is used for configuration and test result files. Using the web also reduces deployment requirements to a basic web server with advanced functionality such as test collection and automatic processing using PHP. As recruiting participants can be very time-consuming, and as for some tests a large number of participants is needed, browser-based tests \\cite{schoeffler2015mushra}. However, to our knowledge, no tool currently exists that allows the creation of a remotely accessible listening test. \n148: \n149: \tBoth BeaqleJS \\cite{beaqlejs} and mushraJS\\footnote{https://github.com/akaroice/mushraJS} also operate in the browser, however BeaqleJS does not make use of the Web Audio API and therefore lacks arbitrary manipulation of audio stream samples, and neither offer an adequately wide choice of test designs for them to be useful to many researchers. %requires programming knowledge?... \n150: \t\n151: \t% only browser-based? \n152: \t\\begin{table*}[ht]\n153: \\caption{Table with existing listening test platforms and their features}\n154: \\begin{center}\n155: \t\\begin{tabular}{|*{6}{l|}}\n156: \t\t\\hline\n157: \t\t\\textbf{Name} \t& \\textbf{Ref.} \t& \\textbf{Language} \t& \\textbf{Interfaces} \t\t\t& \\textbf{Remote} \t\t\t& \\textbf{All UI} \t\\\\\n158: \t\t\\hline\n159: \t\tAPE \t\t\t& \\cite{ape}\t\t& MATLAB\t\t\t\t& multi-stimulus, 1 axis per attribute \t& \t\t\t\t\t& \t\t\t \\\\\n160: \t\tBeaqleJS\t\t& \\cite{beaqlejs}\t& JavaScript\t\t\t& ABX, MUSHRA \t\t\t\t\t& (not natively supported) \t& \t\t\t \\\\\n161: \t\tHULTI-GEN \t\t& \\cite{hultigen}\t& MAX \t\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t& \t\t\t\t\t\t\t& \\checkmark \\\\\n162: \t\tmushraJS\t\t& \t\t\t\t\t& JavaScript \t\t\t& MUSHRA \t\t\t\t\t\t& \\checkmark\t\t\t\t& \t \\\\\n163: \t\tMUSHRAM\t\t\t& \\cite{mushram}\t& MATLAB\t\t\t\t& MUSHRA\t\t\t\t\t\t& \t\t\t\t\t\t\t& \t\t\t \\\\\n164: \t\tScale \t\t\t& \\cite{scale}\t\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces} &\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t&\t\t\t \\\\\n165: \t\tWhisPER\t\t\t& \\cite{whisper}\t& MATLAB\t\t\t\t& See Table \\ref{tab:toolbox_interfaces}\t\t\t\t\t\t\t\t&\t\t\t\t\t\t\t& \\checkmark \\\\\n166: \t\t\\textbf{WAET}\t& \\cite{waet}\t\t& JavaScript\t\t\t& \\textbf{All of the above}\t\t\t\t& \\checkmark\t\t\t\t& \\checkmark \\\\\n167: \t\t\\hline\n168: \t\\end{tabular}\n169: \\end{center}\n170: \\label{tab:toolboxes}\n171: \\end{table*}%\n172: \n173: \\begin{table*}[ht]\n174: \\caption{Table with interfaces and which toolboxes support them}\n175: \\begin{center}\n176: \t\\begin{tabular}{|*{5}{l|}}\n177: \t\t\\hline\n178: \t\t\\textbf{Interface} \t\t\t\t\t\t\t\t\t& \\textbf{HULTI-GEN} \t& \\textbf{Scale} \t& \\textbf{WhisPER} \t& \\textbf{WAET} \\\\\n179: \t\t\\hline\n180: \t\tMUSHRA (ITU-R BS. 1534)\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark \t\\\\\n181: \t\tRank scale \t\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n182: \t\t\tLikert scale\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n183: \t\t\tABC/HR (ITU-R BS. 1116)\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n184: \t\t\t-50 to 50 Bipolar with Ref\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \t\t\t\t\t& \\checkmark\t\\\\\n185: \t\t\tAbsolute Category Rating (ACR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n186: \t\t\tDegredation Category Rating (DCR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n187: \t\t\tComparison Category Rating (CCR) Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n188: \t\t\t9 Point Hedonic Category Rating Scale\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\\\\\n189: \t\t\tITU-R 5 Point Continuous Impairment Scale\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n190: \t\t\tPairwise Comparison / AB test\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n191: \t\t\tMulti-attribute ratings\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n192: \t\t\tABX Test\t\t\t\t\t\t\t\t\t\t\t& \\checkmark \t\t\t&\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\\\\\n193: \t\t\tAdaptive psychophysical methods\t\t\t\t\t\t& \t\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n194: \t\t\tRepertory Grid Technique (RGT)\t\t\t\t\t\t&\t\t\t\t\t\t&\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n195: \t\t\tSemantic differential\t\t\t\t\t\t\t\t&\t\t\t\t\t\t& \\checkmark\t\t& \\checkmark\t\t&\t\t\t\t\\\\\n196: \t\t\tn-Alternative Forced choice \t\t\t\t\t\t&\t\t\t\t\t\t& \\checkmark\t\t&\t\t\t\t\t&\t\t\t\t\\\\\n197: \n198: \t\t\\hline\n199: \t\\end{tabular}\n200: \\end{center}\n201: \\label{tab:toolbox_interfaces}\n202: \\end{table*}%\n203: \n204: % \n205: %Selling points: remote tests, visualisaton, create your own test in the browser, many interfaces, few/no dependencies, flexibility\n206: \n207: To meet the need for a cross-platform, versatile and easy-to-use listening test tool, we previously developed the Web Audio Evaluation Tool \\cite{waet} which at the time of its inception was capable of running a listening test in the browser from an XML configuration file, and storing an XML file as well, with one particular interface. We have now expanded this into a tool with which a wide range of listening test types can easily be constructed and set up remotely, without any need for manually altering code or configuration files, and which allows visualisation of the collected results in the browser. In this paper, we discuss these different aspects and explore which future improvements would be possible. Specifically, in Section \\ref{sec:architecture} we cover the general implementation aspects, with a focus on the Web Audio API, followed by a discussion of the requirements for successful remote tests in Section \\ref{sec:remote}. Section \\ref{sec:interfaces} describes the various interfaces the tool supports, as well as how to keep this manageable. Finally, in Section \\ref{sec:analysis} we provide an overview of the analysis capabilities in the browser, before summarising our findings and listing future research directions in Section \\ref{sec:conclusion}. \n208: \n209: \\begin{comment}\n210: % MEETING 8 OCTOBER\n211: \\subsection{Meeting 8 October}\n212: \\begin{itemize}\n213: \t\\item Do we manipulate audio?\\\\\n214: \t \t\\begin{itemize}\n215: \t \t\t\\item Add loudness equalisation? (test\\_create.html) Tag with gains. \n216: \t \t\t\\item Add volume slider? \n217: \t \t\t\\item Cross-fade (in interface node): default 0, number of seconds\n218: \t \t\t\\item Also: we use the playback buffer to present metrics of which portion is listened to\n219: \t \t\\end{itemize}\n220: \t \\item Logging system information: whichever are possible (justify others)\n221: \t \\item Input streams as audioelements\n222: \t \t\\item Capture microphone to estimate loudness (especially Macbook)\n223: \t \t\\item Test page (in-built oscillators): left-right calibration, ramp up test tone until you hear it; optional compensating EQ (future work implementing own filters) --> Highlight issues! \n224: \t \t\\item Record IP address (PHP function, grab and append to XML file)\n225: \t \t\\item Expand anchor/reference options\n226: \t \t\\item AB / ABX\n227: \\end{itemize}\n228: \n229: \\subsubsection{Issues}\n230: \\begin{itemize}\n231: \t\\item Filters not consistent (Nick to test across browsers)\n232: \t\\item Playback audiobuffers need to be destroyed and rebuilt each time\n233: \t\\item Can't get channel data, hardware input/output... \n234: \\end{itemize}\n235: \\end{comment}\n236: \t\n237: \\section{Architecture} % title? 'back end'? % NICK\n238: \t\\label{sec:architecture}\n239: \n240: While WAET uses a sparse subset of the Web Audio API functionality, its performance comes directly from using the Web Audio API for audio playback. Listening tests can convey large amounts of information other than obtaining the perceptual relationship between the audio fragments. Specifically, with WAET one can obtain which parts of the audio fragments were listened to and when, at what point in the audio stream the participant switched to a different fragment, and how a fragment's rating was adjusted over time within a session, to name a few. Not only does this allow to evaluate a wealth of perceptual aspects, but it helps detect poor participants whose results are potentially not representative. \n241: \n242: One of the key initial design parameters for WAET is to make the tool as open as possible to non-programmers and to this end the tool has been designed in such a way that all of the user modifiable options are included in a single XML document. This document is loaded up automatically by the web page and the JavaScript code parses and loads any extra resources required to create the test.\n243: \n244: The specification document also contains the URL of the audio fragments for each test page. These fragments are downloaded asynchronously an\n```\n\nCompile log (tail):\n```\n.\n ) \nHere is how much of TeX's memory you used:\n 12454 strings out of 473190\n 201793 string characters out of 5715799\n 660995 words of memory out of 5000000\n 35520 multiletter control sequences out of 15000+600000\n 607080 words of font info for 91 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,1326b,426s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (4 pages, 159112 bytes).\nPDF statistics:\n 94 PDF objects out of 1000 (max. 8388607)\n 64 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/WQVH3/dissertation"} {"bib": false, "lane": "project", "file_edits": [{"file": "figures/f1_architecture.tex", "search": "\\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west, align=left]", "replace": "\\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west]", "type": "real"}, {"file": "figures/f1_architecture.tex", "search": "\\node[font=\\scriptsize, right=0.5mm of rR, anchor=west, align=left]", "replace": "\\node[font=\\scriptsize, right=0.5mm of rR, anchor=west]", "type": "real"}, {"file": "main.tex", "search": "% Figure PDFs (F2/F3/F6/F7) are generated in journal/figures/ by\n% scripts/plot_f*.py; symlinks in paper_drafts/figures/ point there\n% so \\includegraphics{figures/...} resolves without \\graphicspath.", "replace": "% Resolve \\includegraphics{figures/...} against both the local\n% paper_drafts/figures/ dir (F1 TikZ + any local figures) and the\n% sibling journal/figures/ dir (where the F2/F3/F6/F7 PDFs are\n% generated by scripts/plot_f*.py and journal/plot_*.py). Trailing\n% slash on each path is required by graphicx.\n\\graphicspath{{figures/}{../figures/}}", "type": "real"}, {"file": "main.tex", "search": "\\title{Probabilistic Spatial Memory: A Bounded-Memory Retrieval\nSubstrate for Wearable Look-Back Question Answering}\n\\titlerunning{Probabilistic Spatial Memory for Wearable Look-Back QA}\n\n% Author block intentionally blank for double-blind review.", "replace": "\\title{Probabilistic Spatial Memory: A Bounded-Memory Retrieval\nSubstrate for Wearable Look-Back Question Answering}\n\n% Author block intentionally blank for double-blind review.", "type": "real"}], "reported_file": "figures/f1_architecture.tex", "fix_files": ["figures/f1_architecture.tex", "main.tex"], "single_shot_visible": false, "error_lines": [{"line": 84, "text": "LaTeX Error: Not allowed in LR mode.", "file": "figures/f1_architecture.tex", "fileLabel": "f1_architecture.tex"}, {"line": 84, "text": "LaTeX Error: Not allowed in LR mode.", "file": "main.tex", "fileLabel": null}, {"line": 96, "text": "LaTeX Error: Not allowed in LR mode.", "file": "main.tex", "fileLabel": null}], "log_tail": "exmf-dist/fonts/type1/public/cm-super/sfbx0900.pfb>\nOutput written on main.pdf (24 pages, 1712321 bytes).\nPDF statistics:\n 574 PDF objects out of 1000 (max. 8388607)\n 352 compressed objects within 4 object streams\n 97 named destinations out of 1000 (max. 500000)\n 59425 words of extra memory for PDF output out of 61914 (max. 10000000)\n\n", "prompt": "The LaTeX file `figures/f1_architecture.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- figures/f1_architecture.tex line 84: LaTeX Error: Not allowed in LR mode.\n- line 84: LaTeX Error: Not allowed in LR mode.\n- line 96: LaTeX Error: Not allowed in LR mode.\n\nProject files:\n- .gitignore\n- figures/f1_architecture.tex\n- main.tex\n- references.bib\n- section_1_intro.tex\n- section_2_method.tex\n- section_3_pipeline.tex\n- section_4_related.tex\n- section_5_results.tex\n- section_6_limitations.tex\n- section_7_conclusion.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: % PSM: Probabilistic Spatial Memory for Wearable Look-Back QA\n2: % ECCV 2026 Wearables AI Workshop submission, v1 draft skeleton.\n3: %\n4: % This is a generic LaTeX skeleton, not the ECCV style itself —\n5: % drop in eccv2026.sty / \\documentclass{eccv2026} when the\n6: % workshop's style file lands. The section content (sections 1-7,\n7: % one .tex file each in this dir) is target-agnostic and will\n8: % slot into the ECCV style directly with no rewrites.\n9: %\n10: % To compile locally (any TeX distribution):\n11: % cd journal/paper_drafts\n12: % pdflatex main.tex\n13: % bibtex main\n14: % pdflatex main.tex\n15: % pdflatex main.tex\n16: %\n17: % Section status (2026-06-04):\n18: % §1 Intro v1 drafted\n19: % §2 Architecture v1 drafted\n20: % §3 Pipeline v1 drafted\n21: % §4 Setup folded into §5.1; standalone §4 omitted\n22: % §5 Results v1 drafted (§5.5 multi-session locked;\n23: % §5.8 Aria Gen 2 PENDING task #7)\n24: % §6 Limitations v1 drafted\n25: % §7 Conclusion placeholder; write last\n26: \n27: % Springer LNCS template (ECCV's required format). When the\n28: % workshop-specific eccv2026.sty drops, swap \\documentclass{llncs}\n29: % for \\documentclass{eccv2026}; the body is otherwise compatible.\n30: \\documentclass[runningheads]{llncs}\n31: \n32: \\usepackage[utf8]{inputenc}\n33: \\usepackage[T1]{fontenc}\n34: \\usepackage{microtype}\n35: \\usepackage{graphicx}\n36: % Figure PDFs (F2/F3/F6/F7) are generated in journal/figures/ by\n37: % scripts/plot_f*.py; symlinks in paper_drafts/figures/ point there\n38: % so \\includegraphics{figures/...} resolves without \\graphicspath.\n39: \\usepackage{booktabs}\n40: \\usepackage{amsmath}\n41: \\usepackage{amssymb}\n42: \\usepackage{xcolor}\n43: \\usepackage[hidelinks]{hyperref}\n44: \\usepackage{xspace}\n45: \\usepackage{pifont}\n46: \\usepackage{tikz}\n47: \\usetikzlibrary{positioning, arrows.meta, fit, calc,\n48: shapes.geometric, backgrounds}\n49: \n50: % Macros used across sections.\n51: \\newcommand{\\psm}{\\textsc{PSM}\\xspace}\n52: \\newcommand{\\caponek}{\\texttt{per\\_cell\\_cap}\\xspace}\n53: % Per-cell PASS / FAIL marks for the multi-corpus acceptance table.\n54: % pifont's \\ding chars match the LNCS body font weight better than\n55: % amssymb \\checkmark / $\\times$ at the cell sizes used in tables.\n56: \\newcommand{\\cmark}{\\ding{51}}\n57: \\newcommand{\\xmark}{\\ding{55}}\n58: \n59: \\title{Probabilistic Spatial Memory: A Bounded-Memory Retrieval\n60: Substrate for Wearable Look-Back Question Answering}\n61: \\titlerunning{Probabilistic Spatial Memory for Wearable Look-Back QA}\n62: \n63: % Author block intentionally blank for double-blind review.\n64: \\author{Anonymous}\n65: \\institute{Anonymous Institution\\\\\\email{anon@example.com}}\n66: \n67: \\begin{document}\n68: \n69: \\maketitle\n70: \n71: \\begin{abstract}\n72: A wearable AI assistant captures hours of egocentric video per day;\n73: answering a look-back question (``where did I leave my keys?'')\n74: requires retrieving the relevant moments under strict on-device\n75: memory bounds. We propose \\textbf{Probabilistic Spatial Memory}\n76: (\\psm), a streaming spatial-temporal index combining an H3 hex-grid\n77: tessellation, a time-decayed ring buffer of HyperLogLog sketches per\n78: cell, and reservoir-sampled CLIP-embedding exemplars. \\psm{} exposes\n79: a novel \\caponek{} knob that smoothly trades strict spatial diversity\n80: for embedding-similarity precision; the permissive endpoint\n81: (\\texttt{cap}=$K$) reduces to brute-force retrieval over all\n82: in-reservoir exemplars. The\n83: spatial-axis discrimination generalizes across \\textbf{14 street-scale\n84: sessions} drawn from \\textbf{3 distinct sensor stacks} (SLOPER4D\n85: head-mounted LiDAR, Nymeria + LookOut~\\cite{pan2025lookout} Project\n86: Aria MPS) and \\textbf{3 encoder families} (laion CLIP-L / CLIP-bigG,\n87: Google SigLIP~2~\\cite{tschannen2025siglip2}): 13/14 sessions pass a\n88: monotone-r10$\\to$r12 Hit\\,@\\,5 acceptance with $\\geq 4$\\,pp lift on\n89: at least one encoder. At matched candidate budget ($K{=}8$),\n90: \\psm{} \\emph{beats} vanilla Gemini~3.1~Pro retrieval by\n91: $1{-}\\infty\\times$ on every one of these 14 sessions (median\n92: $\\sim 4\\times$, with 4 sessions where vanilla MLLM Hit\\,@\\,5 is\n93: zero because the uniform $K{=}8$ frames structurally never land\n94: in a $\\sim$3\\,s GT interval). The C engine ($\\sim$700 LoC) and\n95: Python eval harness are released under MIT.\n96: \n97: \\keywords{Egocentric video \\and Spatial memory \\and Bounded memory \\and\n98: Look-back QA \\and Retrieval substrate \\and Wearable AI.}\n99: \\end{abstract}\n100: \n101: % ---- Body sections -------------------------------------------------\n102: \\input{section_1_intro.tex}\n103: \\input{section_2_method.tex}\n104: \\input{section_3_pipeline.tex}\n105: \\input{section_4_related.tex}\n106: \\input{section_5_results.tex}\n107: \\input{section_6_limitations.tex}\n108: \n109: \\input{section_7_conclusion.tex}\n110: \n111: % Reproducibility note: the engine + eval harness are released\n112: % under MIT (URL withheld for double-blind review; available in\n113: % the camera-ready). Key reproduction entry points:\n114: % scripts/sweep_per_cell_cap.py (per_cell_cap sweep)\n115: % scripts/multisession_per_cell_cap_sweep.py (multi-session)\n116: % scripts/eval_psm_mllm.py --mllm gemini (PSM->Gemini rerank)\n117: % Folded into a footnote below to save vertical space.\n118: \n119: % ---- Bibliography -------------------------------------------------\n120: \\bibliographystyle{plain}\n121: \\bibliography{references}\n122: \n123: \\end{document}\n124: \n```\n\nCurrent content of `figures/f1_architecture.tex` (full file, line-numbered):\n```\n1: % F1 — PSM architecture overview.\n2: % Three-stage left-to-right pipeline: streaming input -> PSM ingest\n3: % (H3 cells with per-cell ring-buffer-of-HLLs + reservoir exemplars)\n4: % -> top-K retrieval (per_cell_cap gate) -> MLLM rerank.\n5: % Pure TikZ; requires \\usetikzlibrary{positioning,arrows.meta,fit,\n6: % calc,shapes.geometric,backgrounds} loaded in main.tex.\n7: \\begin{figure}[t]\n8: \\centering\n9: % TikZ-native scaling (scale + transform shape) rather than\n10: % \\resizebox{\\linewidth}{!}{...}; the latter measures the picture\n11: % in an \\hbox, which is incompatible with the fit library + multi-\n12: % line label nodes used below (triggers \"Not allowed in LR mode\"\n13: % at the close of the resizebox). 0.78 fits the LNCS single-column\n14: % linewidth comfortably; bump if the journal style is wider.\n15: \\begin{tikzpicture}[\n16: scale=0.78, transform shape,\n17: >={Stealth[length=2mm,width=1.6mm]},\n18: font=\\scriptsize,\n19: node distance=2mm and 3mm,\n20: box/.style={draw, rounded corners=1pt, align=center,\n21: inner sep=2pt, minimum height=5mm, fill=white},\n22: iobox/.style={box, fill=gray!8},\n23: stage/.style={draw, dashed, rounded corners=2pt,\n24: inner sep=3pt, gray!70},\n25: stagelbl/.style={font=\\scriptsize\\bfseries, gray!60!black},\n26: hex/.style={draw, regular polygon, regular polygon sides=6,\n27: minimum size=6mm, inner sep=0pt, rotate=30,\n28: fill=gray!5},\n29: hexhi/.style={hex, fill=blue!12, draw=blue!60!black, very thick},\n30: hllbox/.style={draw, minimum width=2.2mm, minimum height=2.2mm,\n31: inner sep=0pt, fill=orange!25, draw=orange!70!black},\n32: hllold/.style={hllbox, fill=orange!8, draw=orange!30},\n33: resvslot/.style={draw, minimum width=2.2mm, minimum height=2.2mm,\n34: inner sep=0pt, fill=blue!15, draw=blue!60!black},\n35: flow/.style={->, thick, gray!60!black},\n36: smallflow/.style={->, semithick, gray!60!black},\n37: ]\n38: \n39: % ============== Stage 0: streaming input ==============\n40: \\node[iobox] (frames)\n41: {Video frames\\\\@ 1\\,fps};\n42: \\node[iobox, below=2mm of frames] (slam)\n43: {SLAM trajectory\\\\$(\\text{lat},\\text{lng},t)$};\n44: \n45: % ============== Stage 1: PSM ingest ==============\n46: % Encoder\n47: \\node[box, right=8mm of frames] (enc)\n48: {VLM encoder\\\\\\textit{(CLIP-L / bigG /}\\\\\\textit{SigLIP\\,2)}};\n49: \\node[box, right=3mm of enc, fill=blue!8] (emb)\n50: {$\\mathbf{e}\\in\\mathbb{R}^{D}$};\n51: \n52: % H3 lookup\n53: \\node[box, right=8mm of slam, fill=gray!8] (h3lookup)\n54: {H3 lookup\\\\(res.\\ $r{=}12$)};\n55: \n56: % H3 hex grid (cluster of 7 hexes -- 1 center + 6 ring)\n57: \\coordinate (hexcenter) at ($(emb.east) + (16mm, -5mm)$);\n58: % Hex geometry: pointy-top via rotate=30. Use side-to-side offsets.\n59: \\pgfmathsetmacro{\\hs}{3.0mm} % side length proxy; controlled by minimum size\n60: % Place 7 hexes manually around (hexcenter). With minimum size 6mm\n61: % and rotate=30 we get pointy-top; horizontal spacing ~5.2mm,\n62: % vertical step ~3.0mm between offset rows.\n63: \\node[hex] (h0) at ($(hexcenter) + (-5.2mm, 3.0mm)$) {};\n64: \\node[hex] (h1) at ($(hexcenter) + ( 0mm, 6.0mm)$) {};\n65: \\node[hex] (h2) at ($(hexcenter) + ( 5.2mm, 3.0mm)$) {};\n66: \\node[hexhi] (hC) at (hexcenter) {};\n67: \\node[hex] (h4) at ($(hexcenter) + (-5.2mm,-3.0mm)$) {};\n68: \\node[hex] (h5) at ($(hexcenter) + ( 0mm, -6.0mm)$) {};\n69: \\node[hex] (h6) at ($(hexcenter) + ( 5.2mm,-3.0mm)$) {};\n70: \n71: \\node[font=\\scriptsize, below=0.5mm of h5] {H3 hex cells};\n72: \n73: % Per-cell state pop-out (for highlighted hex hC)\n74: \\coordinate (cellAnchor) at ($(hexcenter) + (18mm, 0mm)$);\n75: \n76: % Ring buffer of HLL sketches: 6 small boxes in a row, decayed shading\n77: \\node[hllold] (hll1) at ($(cellAnchor) + (-4.0mm, 5.0mm)$) {};\n78: \\node[hllold] (hll2) at ($(cellAnchor) + (-1.6mm, 5.0mm)$) {};\n79: \\node[hllbox] (hll3) at ($(cellAnchor) + ( 0.8mm, 5.0mm)$) {};\n80: \\node[hllbox] (hll4) at ($(cellAnchor) + ( 3.2mm, 5.0mm)$) {};\n81: \\node[hllbox] (hll5) at ($(cellAnchor) + ( 5.6mm, 5.0mm)$) {};\n82: \\node[hllbox] (hll6) at ($(cellAnchor) + ( 8.0mm, 5.0mm)$) {};\n83: \\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west]\n84: (hlllbl) {ring of $C$\\\\HLL sketches\\\\\\textit{(time-decay)}};\n85: \n86: % Reservoir: 5 small slots in a row\n87: \\node[resvslot] (r1) at ($(cellAnchor) + (-4.0mm, 0mm)$) {};\n88: \\node[resvslot] (r2) at ($(cellAnchor) + (-1.6mm, 0mm)$) {};\n89: \\node[resvslot] (r3) at ($(cellAnchor) + ( 0.8mm, 0mm)$) {};\n90: \\node[resvslot] (r4) at ($(cellAnchor) + ( 3.2mm, 0mm)$) {};\n91: \\node[resvslot] (r5) at ($(cellAnchor) + ( 5.6mm, 0mm)$) {};\n92: \\node[font=\\scriptsize] at ($(r5.east)+(1.0mm,0)$) [anchor=west]\n93: (rlbl) {$\\cdots$};\n94: \\node[resvslot] (rR) at ($(cellAnchor) + ( 9.0mm, 0mm)$) {};\n95: \\node[font=\\scriptsize, right=0.5mm of rR, anchor=west]\n96: (rsvlbl) {reservoir of $R$\\\\exemplar embeddings};\n97: \n98: % Bound-emphasis label\n99: \\node[font=\\scriptsize\\itshape, below=4mm of r3, align=center,\n100: gray!60!black] (boundlbl)\n101: {bounded per-cell state};\n102: \n103: % Connector from highlighted hex to pop-out block\n104: \\draw[smallflow, dashed, blue!50!black]\n105: (hC.east) -- ($(hll1.west) + (-1mm, -2.5mm)$);\n106: \n107: % Stage-1 flow arrows\n108: \\draw[flow] (frames.east) -- (enc.west);\n109: \\draw[flow] (enc.east) -- (emb.west);\n110: \\draw[flow] (slam.east) -- (h3lookup.west);\n111: \\draw[flow] (emb.east) -- ++(3mm,0) |- (hC.west);\n112: \\draw[flow] (h3lookup.east) -- ++(3mm,0) |- (h4.west);\n113: \n114: % ============== Stage 2: top-K retrieval ==============\n115: \\node[iobox, right=22mm of rsvlbl, align=center] (query)\n116: {Question\\\\\\textit{``where did I}\\\\\\textit{leave my keys?''}};\n117: \\node[box, below=2mm of query] (qenc)\n118: {same VLM\\\\encoder};\n119: \\node[box, right=4mm of qenc, fill=blue!8] (qemb)\n120: {$\\mathbf{q}$};\n121: \n122: \\node[box, below=6mm of qemb, align=center, fill=orange!10,\n123: draw=orange!70!black] (topk)\n124: {top-$K$ retrieval\\\\(cosine sim.)\\\\\\textit{per\\_cell\\_cap gate}};\n125: \n126: % Output candidate list\n127: \\node[box, below=4mm of topk, align=center, fill=blue!5] (cands)\n128: {$K{=}5$ candidates\\\\$(t,\\text{cell},\\text{lat},\\text{lng},\\mathbf{e})$\\\\\\textit{sub-ms}};\n129: \n130: \\draw[flow] (query.south) -- (qenc.north);\n131: \\draw[flow] (qenc.east) -- (qemb.west);\n132: \\draw[flow] (qemb.south) |- (topk.east);\n133: % Reservoir -> top-K (cosine search target)\n134: \\draw[flow] (rR.east) -- ++(2mm,0) -- ++(0,-7mm) -| (topk.west);\n135: \\draw[flow] (topk.south) -- (cands.north);\n136: \n137: % ============== Stage 3: MLLM rerank ==============\n138: \\node[box, right=10mm of cands, align=center,\n139: fill=green!8, draw=green!50!black] (fetch)\n140: {fetch $K$\\\\frames\\\\\\textit{(buffer)}};\n141: \\node[box, right=3mm of fetch, align=center,\n142: fill=green!12, draw=green!50!black] (mllm)\n143: {MLLM rerank\\\\\\textit{Gemini\\,3.1\\,Pro}};\n144: \\node[iobox, right=3mm of mllm, align=center] (ans)\n145: {answer\\\\$(t, \\text{frame})$};\n146: \n147: \\draw[flow] (cands.east) -- (fetch.west);\n148: \\draw[flow] (fetch.east) -- (mllm.west);\n149: \\draw[flow] (mllm.east) -- (ans.west);\n150: \n151: % ============== Stage bounding boxes ==============\n152: % Drawn last (not via pgfonlayer{background}, which is incompatible\n153: % with the enclosing \\resizebox{\\linewidth}{!}{...} — pgfonlayer\n154: % emits vertical-mode primitives that are illegal in LR mode).\n155: % Since `stage` is a transparent dashed outline at the perimeter of\n156: % the fit region, drawing it on top of content rather than behind\n157: % is visually identical.\n158: \\node[stage, fit=(frames)(slam),\n159: label={[stagelbl, anchor=south]above:Stage 0: stream}] {};\n160: \\node[stage, fit=(enc)(emb)(h3lookup)(h0)(h2)(h5)(rsvlbl)(boundlbl),\n161: label={[stagelbl, anchor=south]above:Stage 1: PSM ingest}] {};\n162: \\node[stage, fit=(query)(qenc)(qemb)(topk)(cands),\n163: label={[stagelbl, anchor=south]above:Stage 2: PSM top-$K$}] {};\n164: \\node[stage, fit=(fetch)(mllm)(ans),\n165: label={[stagelbl, anchor=south]above:Stage 3: MLLM rerank}] {};\n166: \n167: \\end{tikzpicture}\n168: \\caption{\\textbf{PSM architecture.}\n169: Stage~0: streaming egocentric frames at 1\\,fps plus the wearer's\n170: SLAM trajectory.\n171: Stage~1 (\\emph{ingest}): each frame is encoded by a swappable\n172: vision--language encoder (CLIP-L / CLIP-bigG / SigLIP\\,2) and\n173: deposited into the H3 hex cell containing its $(\\text{lat},\n174: \\text{lng})$. Per-cell state is \\emph{bounded}: a ring buffer of $C$\n175: HyperLogLog sketches (orange; older sketches faded) gives a\n176: time-decayed unique-event cardinality and the\n177: $(t_{\\min}, t_{\\max})$ envelope; a reservoir of $R$\n178: sampled embeddings (blue) is the bounded-memory substitute for the\n179: linearly-growing CLIP bank.\n180: Stage~2 (\\emph{retrieval}): the query text is encoded with the same\n181: encoder and cosine-similarity-searched against the reservoir union;\n182: \\caponek{} bounds how many of the $K{=}5$ slots a single cell may\n183: fill, returning candidate $(t, \\text{cell}, \\text{lat}, \\text{lng},\n184: \\mathbf{e})$ tuples in sub-millisecond C-side wall time.\n185: Stage~3 (\\emph{rerank}): the $K{=}5$ frames are fetched from the\n186: device frame buffer and shipped to a frontier MLLM (Gemini\\,3.1\\,Pro),\n187: which picks the single best frame index --- the localized answer.}\n188: \\label{fig:f1-architecture}\n189: \\end{figure}\n190: \n```\n\nCompile log (tail):\n```\nexmf-dist/fonts/type1/public/cm-super/sfbx0900.pfb>\nOutput written on main.pdf (24 pages, 1712321 bytes).\nPDF statistics:\n 574 PDF objects out of 1000 (max. 8388607)\n 352 compressed objects within 4 object streams\n 97 named destinations out of 1000 (max. 500000)\n 59425 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\title{Probabilistic Spatial Memory: A Bounded-Memory Retrieval\nSubstrate for Wearable Look-Back Question Answering}\n\n% Author block intentionally blank for double-blind review.\n=======\n\\title{Probabilistic Spatial Memory: A Bounded-Memory Retrieval\nSubstrate for Wearable Look-Back Question Answering}\n\\titlerunning{Probabilistic Spatial Memory for Wearable Look-Back QA}\n\n% Author block intentionally blank for double-blind review.\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n% Resolve \\includegraphics{figures/...} against both the local\n% paper_drafts/figures/ dir (F1 TikZ + any local figures) and the\n% sibling journal/figures/ dir (where the F2/F3/F6/F7 PDFs are\n% generated by scripts/plot_f*.py and journal/plot_*.py). Trailing\n% slash on each path is required by graphicx.\n\\graphicspath{{figures/}{../figures/}}\n=======\n% Figure PDFs (F2/F3/F6/F7) are generated in journal/figures/ by\n% scripts/plot_f*.py; symlinks in paper_drafts/figures/ point there\n% so \\includegraphics{figures/...} resolves without \\graphicspath.\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\node[font=\\scriptsize, right=0.5mm of rR, anchor=west]\n=======\n\\node[font=\\scriptsize, right=0.5mm of rR, anchor=west, align=left]\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west]\n=======\n\\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west, align=left]\n>>>>>>> REPLACE\n", "id": "github_arjtala__probabilistic_spatial_memory__7729164", "doc": "github_multi/arjtala__probabilistic_spatial_memory__7729164", "mutation": "real", "source": "github", "repo": "arjtala/probabilistic_spatial_memory", "sha": "77291642dbe4f05ec044d27d83e593466839662f", "parent_sha": "2ca6618c8341fde27c221158324dd04baa6cdc2b", "license": "MIT", "url": "https://github.com/arjtala/probabilistic_spatial_memory/commit/77291642dbe4f05ec044d27d83e593466839662f", "changed_files": ["figures/f1_architecture.tex", "main.tex"], "original_root": "main.tex", "n_files": 10, "engine": "pdflatex", "error_category": "LaTeX Error: Not allowed in LR mode.", "prompt_v1": "The LaTeX file `figures/f1_architecture.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- figures/f1_architecture.tex line 84: LaTeX Error: Not allowed in LR mode.\n- line 84: LaTeX Error: Not allowed in LR mode.\n- line 96: LaTeX Error: Not allowed in LR mode.\n\nProject files:\n- .gitignore\n- figures/f1_architecture.tex\n- main.tex\n- references.bib\n- section_1_intro.tex\n- section_2_method.tex\n- section_3_pipeline.tex\n- section_4_related.tex\n- section_5_results.tex\n- section_6_limitations.tex\n- section_7_conclusion.tex\n\nCurrent content of `figures/f1_architecture.tex` (full file, line-numbered):\n```\n1: % F1 — PSM architecture overview.\n2: % Three-stage left-to-right pipeline: streaming input -> PSM ingest\n3: % (H3 cells with per-cell ring-buffer-of-HLLs + reservoir exemplars)\n4: % -> top-K retrieval (per_cell_cap gate) -> MLLM rerank.\n5: % Pure TikZ; requires \\usetikzlibrary{positioning,arrows.meta,fit,\n6: % calc,shapes.geometric,backgrounds} loaded in main.tex.\n7: \\begin{figure}[t]\n8: \\centering\n9: % TikZ-native scaling (scale + transform shape) rather than\n10: % \\resizebox{\\linewidth}{!}{...}; the latter measures the picture\n11: % in an \\hbox, which is incompatible with the fit library + multi-\n12: % line label nodes used below (triggers \"Not allowed in LR mode\"\n13: % at the close of the resizebox). 0.78 fits the LNCS single-column\n14: % linewidth comfortably; bump if the journal style is wider.\n15: \\begin{tikzpicture}[\n16: scale=0.78, transform shape,\n17: >={Stealth[length=2mm,width=1.6mm]},\n18: font=\\scriptsize,\n19: node distance=2mm and 3mm,\n20: box/.style={draw, rounded corners=1pt, align=center,\n21: inner sep=2pt, minimum height=5mm, fill=white},\n22: iobox/.style={box, fill=gray!8},\n23: stage/.style={draw, dashed, rounded corners=2pt,\n24: inner sep=3pt, gray!70},\n25: stagelbl/.style={font=\\scriptsize\\bfseries, gray!60!black},\n26: hex/.style={draw, regular polygon, regular polygon sides=6,\n27: minimum size=6mm, inner sep=0pt, rotate=30,\n28: fill=gray!5},\n29: hexhi/.style={hex, fill=blue!12, draw=blue!60!black, very thick},\n30: hllbox/.style={draw, minimum width=2.2mm, minimum height=2.2mm,\n31: inner sep=0pt, fill=orange!25, draw=orange!70!black},\n32: hllold/.style={hllbox, fill=orange!8, draw=orange!30},\n33: resvslot/.style={draw, minimum width=2.2mm, minimum height=2.2mm,\n34: inner sep=0pt, fill=blue!15, draw=blue!60!black},\n35: flow/.style={->, thick, gray!60!black},\n36: smallflow/.style={->, semithick, gray!60!black},\n37: ]\n38: \n39: % ============== Stage 0: streaming input ==============\n40: \\node[iobox] (frames)\n41: {Video frames\\\\@ 1\\,fps};\n42: \\node[iobox, below=2mm of frames] (slam)\n43: {SLAM trajectory\\\\$(\\text{lat},\\text{lng},t)$};\n44: \n45: % ============== Stage 1: PSM ingest ==============\n46: % Encoder\n47: \\node[box, right=8mm of frames] (enc)\n48: {VLM encoder\\\\\\textit{(CLIP-L / bigG /}\\\\\\textit{SigLIP\\,2)}};\n49: \\node[box, right=3mm of enc, fill=blue!8] (emb)\n50: {$\\mathbf{e}\\in\\mathbb{R}^{D}$};\n51: \n52: % H3 lookup\n53: \\node[box, right=8mm of slam, fill=gray!8] (h3lookup)\n54: {H3 lookup\\\\(res.\\ $r{=}12$)};\n55: \n56: % H3 hex grid (cluster of 7 hexes -- 1 center + 6 ring)\n57: \\coordinate (hexcenter) at ($(emb.east) + (16mm, -5mm)$);\n58: % Hex geometry: pointy-top via rotate=30. Use side-to-side offsets.\n59: \\pgfmathsetmacro{\\hs}{3.0mm} % side length proxy; controlled by minimum size\n60: % Place 7 hexes manually around (hexcenter). With minimum size 6mm\n61: % and rotate=30 we get pointy-top; horizontal spacing ~5.2mm,\n62: % vertical step ~3.0mm between offset rows.\n63: \\node[hex] (h0) at ($(hexcenter) + (-5.2mm, 3.0mm)$) {};\n64: \\node[hex] (h1) at ($(hexcenter) + ( 0mm, 6.0mm)$) {};\n65: \\node[hex] (h2) at ($(hexcenter) + ( 5.2mm, 3.0mm)$) {};\n66: \\node[hexhi] (hC) at (hexcenter) {};\n67: \\node[hex] (h4) at ($(hexcenter) + (-5.2mm,-3.0mm)$) {};\n68: \\node[hex] (h5) at ($(hexcenter) + ( 0mm, -6.0mm)$) {};\n69: \\node[hex] (h6) at ($(hexcenter) + ( 5.2mm,-3.0mm)$) {};\n70: \n71: \\node[font=\\scriptsize, below=0.5mm of h5] {H3 hex cells};\n72: \n73: % Per-cell state pop-out (for highlighted hex hC)\n74: \\coordinate (cellAnchor) at ($(hexcenter) + (18mm, 0mm)$);\n75: \n76: % Ring buffer of HLL sketches: 6 small boxes in a row, decayed shading\n77: \\node[hllold] (hll1) at ($(cellAnchor) + (-4.0mm, 5.0mm)$) {};\n78: \\node[hllold] (hll2) at ($(cellAnchor) + (-1.6mm, 5.0mm)$) {};\n79: \\node[hllbox] (hll3) at ($(cellAnchor) + ( 0.8mm, 5.0mm)$) {};\n80: \\node[hllbox] (hll4) at ($(cellAnchor) + ( 3.2mm, 5.0mm)$) {};\n81: \\node[hllbox] (hll5) at ($(cellAnchor) + ( 5.6mm, 5.0mm)$) {};\n82: \\node[hllbox] (hll6) at ($(cellAnchor) + ( 8.0mm, 5.0mm)$) {};\n83: \\node[font=\\scriptsize, right=0.5mm of hll6, anchor=west]\n84: (hlllbl) {ring of $C$\\\\HLL sketches\\\\\\textit{(time-decay)}};\n85: \n86: % Reservoir: 5 small slots in a row\n87: \\node[resvslot] (r1) at ($(cellAnchor) + (-4.0mm, 0mm)$) {};\n88: \\node[resvslot] (r2) at ($(cellAnchor) + (-1.6mm, 0mm)$) {};\n89: \\node[resvslot] (r3) at ($(cellAnchor) + ( 0.8mm, 0mm)$) {};\n90: \\node[resvslot] (r4) at ($(cellAnchor) + ( 3.2mm, 0mm)$) {};\n91: \\node[resvslot] (r5) at ($(cellAnchor) + ( 5.6mm, 0mm)$) {};\n92: \\node[font=\\scriptsize] at ($(r5.east)+(1.0mm,0)$) [anchor=west]\n93: (rlbl) {$\\cdots$};\n94: \\node[resvslot] (rR) at ($(cellAnchor) + ( 9.0mm, 0mm)$) {};\n95: \\node[font=\\scriptsize, right=0.5mm of rR, anchor=west]\n96: (rsvlbl) {reservoir of $R$\\\\exemplar embeddings};\n97: \n98: % Bound-emphasis label\n99: \\node[font=\\scriptsize\\itshape, below=4mm of r3, align=center,\n100: gray!60!black] (boundlbl)\n101: {bounded per-cell state};\n102: \n103: % Connector from highlighted hex to pop-out block\n104: \\draw[smallflow, dashed, blue!50!black]\n105: (hC.east) -- ($(hll1.west) + (-1mm, -2.5mm)$);\n106: \n107: % Stage-1 flow arrows\n108: \\draw[flow] (frames.east) -- (enc.west);\n109: \\draw[flow] (enc.east) -- (emb.west);\n110: \\draw[flow] (slam.east) -- (h3lookup.west);\n111: \\draw[flow] (emb.east) -- ++(3mm,0) |- (hC.west);\n112: \\draw[flow] (h3lookup.east) -- ++(3mm,0) |- (h4.west);\n113: \n114: % ============== Stage 2: top-K retrieval ==============\n115: \\node[iobox, right=22mm of rsvlbl, align=center] (query)\n116: {Question\\\\\\textit{``where did I}\\\\\\textit{leave my keys?''}};\n117: \\node[box, below=2mm of query] (qenc)\n118: {same VLM\\\\encoder};\n119: \\node[box, right=4mm of qenc, fill=blue!8] (qemb)\n120: {$\\mathbf{q}$};\n121: \n122: \\node[box, below=6mm of qemb, align=center, fill=orange!10,\n123: draw=orange!70!black] (topk)\n124: {top-$K$ retrieval\\\\(cosine sim.)\\\\\\textit{per\\_cell\\_cap gate}};\n125: \n126: % Output candidate list\n127: \\node[box, below=4mm of topk, align=center, fill=blue!5] (cands)\n128: {$K{=}5$ candidates\\\\$(t,\\text{cell},\\text{lat},\\text{lng},\\mathbf{e})$\\\\\\textit{sub-ms}};\n129: \n130: \\draw[flow] (query.south) -- (qenc.north);\n131: \\draw[flow] (qenc.east) -- (qemb.west);\n132: \\draw[flow] (qemb.south) |- (topk.east);\n133: % Reservoir -> top-K (cosine search target)\n134: \\draw[flow] (rR.east) -- ++(2mm,0) -- ++(0,-7mm) -| (topk.west);\n135: \\draw[flow] (topk.south) -- (cands.north);\n136: \n137: % ============== Stage 3: MLLM rerank ==============\n138: \\node[box, right=10mm of cands, align=center,\n139: fill=green!8, draw=green!50!black] (fetch)\n140: {fetch $K$\\\\frames\\\\\\textit{(buffer)}};\n141: \\node[box, right=3mm of fetch, align=center,\n142: fill=green!12, draw=green!50!black] (mllm)\n143: {MLLM rerank\\\\\\textit{Gemini\\,3.1\\,Pro}};\n144: \\node[iobox, right=3mm of mllm, align=center] (ans)\n145: {answer\\\\$(t, \\text{frame})$};\n146: \n147: \\draw[flow] (cands.east) -- (fetch.west);\n148: \\draw[flow] (fetch.east) -- (mllm.west);\n149: \\draw[flow] (mllm.east) -- (ans.west);\n150: \n151: % ============== Stage bounding boxes ==============\n152: % Drawn last (not via pgfonlayer{background}, which is incompatible\n153: % with the enclosing \\resizebox{\\linewidth}{!}{...} — pgfonlayer\n154: % emits vertical-mode primitives that are illegal in LR mode).\n155: % Since `stage` is a transparent dashed outline at the perimeter of\n156: % the fit region, drawing it on top of content rather than behind\n157: % is visually identical.\n158: \\node[stage, fit=(frames)(slam),\n159: label={[stagelbl, anchor=south]above:Stage 0: stream}] {};\n160: \\node[stage, fit=(enc)(emb)(h3lookup)(h0)(h2)(h5)(rsvlbl)(boundlbl),\n161: label={[stagelbl, anchor=south]above:Stage 1: PSM ingest}] {};\n162: \\node[stage, fit=(query)(qenc)(qemb)(topk)(cands),\n163: label={[stagelbl, anchor=south]above:Stage 2: PSM top-$K$}] {};\n164: \\node[stage, fit=(fetch)(mllm)(ans),\n165: label={[stagelbl, anchor=south]above:Stage 3: MLLM rerank}] {};\n166: \n167: \\end{tikzpicture}\n168: \\caption{\\textbf{PSM architecture.}\n169: Stage~0: streaming egocentric frames at 1\\,fps plus the wearer's\n170: SLAM trajectory.\n171: Stage~1 (\\emph{ingest}): each frame is encoded by a swappable\n172: vision--language encoder (CLIP-L / CLIP-bigG / SigLIP\\,2) and\n173: deposited into the H3 hex cell containing its $(\\text{lat},\n174: \\text{lng})$. Per-cell state is \\emph{bounded}: a ring buffer of $C$\n175: HyperLogLog sketches (orange; older sketches faded) gives a\n176: time-decayed unique-event cardinality and the\n177: $(t_{\\min}, t_{\\max})$ envelope; a reservoir of $R$\n178: sampled embeddings (blue) is the bounded-memory substitute for the\n179: linearly-growing CLIP bank.\n180: Stage~2 (\\emph{retrieval}): the query text is encoded with the same\n181: encoder and cosine-similarity-searched against the reservoir union;\n182: \\caponek{} bounds how many of the $K{=}5$ slots a single cell may\n183: fill, returning candidate $(t, \\text{cell}, \\text{lat}, \\text{lng},\n184: \\mathbf{e})$ tuples in sub-millisecond C-side wall time.\n185: Stage~3 (\\emph{rerank}): the $K{=}5$ frames are fetched from the\n186: device frame buffer and shipped to a frontier MLLM (Gemini\\,3.1\\,Pro),\n187: which picks the single best frame index --- the localized answer.}\n188: \\label{fig:f1-architecture}\n189: \\end{figure}\n190: \n```\n\nCompile log (tail):\n```\nexmf-dist/fonts/type1/public/cm-super/sfbx0900.pfb>\nOutput written on main.pdf (24 pages, 1712321 bytes).\nPDF statistics:\n 574 PDF objects out of 1000 (max. 8388607)\n 352 compressed objects within 4 object streams\n 97 named destinations out of 1000 (max. 500000)\n 59425 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "repo_url": "https://github.com/arjtala/probabilistic_spatial_memory"} {"bib": false, "lane": "project", "file_edits": [{"file": "file-setup.tex", "search": "\\usepackage[utf8]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage[a4paper,margin=1in]{geometry}", "replace": "\\usepackage[a4paper,margin=1in]{geometry}", "type": "real"}, {"file": "front.tex", "search": " {\\normalsize \\textit{Internship Project Report}}\\\\[0.15in]\n\n {\\Large \\textbf{Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems}}\\\\[0.20in]\n\n {\\large\n \\textbf{A Project Report}\\\\[0.12in]\n Submitted in Partial Fulfillment of the Requirements for the\\\\\n Award of the Degree of\\\\[0.12in]\n \\textsc{\\textbf{BACHELOR OF TECHNOLOGY}}\\\\\n \\textit{In}\\\\\n \\textbf{Computer Science \\& Engineering}\\\\[0.24in]\n }\n\n \\normalsize\\textit{Submitted by}\\\\[0.1in]\n \\textbf{Sai Pranay Bhamidi}\\\\\n Roll No.\\ 2206119\\\\[0.12in]\n\n \\textit{Under the supervision of}\\\\[0.12in]", "replace": " {\\normalsize \\textit{Internship Project Report}}\\\\[0.15in]\n \\Large \\textbf{Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems}\\\\[0.15in]\n \\large{ \\textbf{A Project Report} \\\\[0.12in] {Submitted in Partial Fulfillment of the Requirements for the \\\\ {Award of the Degree of}\\\\[0.12in] \\textsc{\\textbf{BACHELOR OF TECHNOLOGY}} \\\\\n \\textit{In}\\\\\n \\textbf{Computer Science \\& Engineering}\\\\[0.12in]\n }\\\\[0.12in]\n \\normalsize \\textit{Submitted by} \\\\[0.1in]\n \\textbf{Sai Pranay Bhamidi} \\\\\n Roll No.\\ 2206119\\\\\n\n \\vspace{.12in}\n \\textit{Under the supervision of}\\\\[0.12in]", "type": "real"}, {"file": "front.tex", "search": " \\textbf{\\large Dr.\\ Jyoti Prakash Singh} & \\textbf{\\large Mr.\\ Dubasi Pavan Kumar}\\\\\n Professor & Founder \\& CEO\\\\\n Dept.\\ of CSE, NIT Patna & VibeTensor\\\\", "replace": " \\textbf{\\large Dr.\\ Jyoti Prakash Singh} & \\textbf{\\large Mr.\\ Dubasi Pavan Kumar} \\\\\n Professor & Founder \\& CEO \\\\\n Dept.\\ of CSE, NIT Patna & VibeTensor \\\\", "type": "real"}, {"file": "front.tex", "search": " \\textbf{June 2026}\n\\end{titlepage}", "replace": " \\textbf{June 2026}\n\n\\end{titlepage}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["file-setup.tex", "front.tex"], "single_shot_visible": true, "error_lines": [{"line": 9, "text": "LaTeX Error: There's no line here to end.", "file": "main.tex", "fileLabel": null}, {"line": 29, "text": "Missing } inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>\nOutput written on main.pdf (56 pages, 2892971 bytes).\nPDF statistics:\n 527 PDF objects out of 1000 (max. 8388607)\n 409 compressed objects within 5 object streams\n 177 named destinations out of 1000 (max. 500000)\n 61 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: LaTeX Error: There's no line here to end.\n- line 29: Missing } inserted.\n\nProject files:\n- History.png\n- archi.drawio.png\n- carbon_before_p1.png\n- carbon_before_p2.png\n- carbon_merkle_blockchain.png\n- carbon_provenance_p1.png\n- carbon_provenance_p2.png\n- carbon_regulated_p1.png\n- carbon_regulated_p2.png\n- carbon_regulated_result.png\n- easscan.png\n- file-setup.tex\n- front.tex\n- main.tex\n- sections/1declaration.tex\n- sections/2acknow.tex\n- sections/3abstract.tex\n- sections/4introduction.tex\n- sections/5literatureSurvey.tex\n- sections/6methodology.tex\n- sections/7conclusion.tex\n- sections/NitP.jpeg\n- sections/appendix.tex\n- sections/certificate.tex\n- sections/dedication.tex\n- sections/internship_certificate.tex\n- sections/internship_certificate_PRINT_NOTES.md\n- sections/ref.tex\n- ssd_architecture.png\n- workflow.png\n\nOther project files (edit them with ):\n\n`file-setup.tex` (full file, line-numbered):\n```\n1: \\usepackage[utf8]{inputenc}\n2: \\usepackage[T1]{fontenc}\n3: \\usepackage[a4paper,margin=1in]{geometry}\n4: \\usepackage{graphicx}\n5: \\usepackage{float}\n6: \\usepackage{amsmath}\n7: \\usepackage{amsfonts}\n8: \\usepackage{amssymb}\n9: \\usepackage{booktabs}\n10: \\usepackage{multirow}\n11: \\usepackage{array}\n12: \\usepackage{setspace}\n13: \\usepackage{titlesec}\n14: \\usepackage{caption}\n15: \\usepackage{subcaption}\n16: \\usepackage{hyperref}\n17: \\usepackage{enumitem}\n18: \\usepackage{longtable}\n19: \\usepackage{tabularx}\n20: \\usepackage{fancyhdr}\n21: \\usepackage{xcolor}\n22: \\usepackage{listings}\n23: \n24: \\setstretch{1.2}\n25: \n26: \\hypersetup{\n27: colorlinks=true,\n28: linkcolor=blue,\n29: urlcolor=blue,\n30: citecolor=black\n31: }\n32: \n33: \\lstset{\n34: basicstyle=\\ttfamily\\footnotesize,\n35: backgroundcolor=\\color{gray!10},\n36: frame=single,\n37: breaklines=true,\n38: keywordstyle=\\color{blue}\\bfseries,\n39: commentstyle=\\color{gray},\n40: stringstyle=\\color{orange},\n41: numbers=left,\n42: numberstyle=\\tiny\\color{gray},\n43: captionpos=b,\n44: language=Python\n45: }\n46: \n```\n\n`front.tex` (full file, line-numbered):\n```\n1: \\begin{titlepage}\n2: \\centering\n3: {\\LARGE \\textbf{VibeTensor Private Limited}}\\\\[0.01in]\n4: {\\normalsize \\textit{Internship Project Report}}\\\\[0.15in]\n5: \n6: {\\Large \\textbf{Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems}}\\\\[0.20in]\n7: \n8: {\\large\n9: \\textbf{A Project Report}\\\\[0.12in]\n10: Submitted in Partial Fulfillment of the Requirements for the\\\\\n11: Award of the Degree of\\\\[0.12in]\n12: \\textsc{\\textbf{BACHELOR OF TECHNOLOGY}}\\\\\n13: \\textit{In}\\\\\n14: \\textbf{Computer Science \\& Engineering}\\\\[0.24in]\n15: }\n16: \n17: \\normalsize\\textit{Submitted by}\\\\[0.1in]\n18: \\textbf{Sai Pranay Bhamidi}\\\\\n19: Roll No.\\ 2206119\\\\[0.12in]\n20: \n21: \\textit{Under the supervision of}\\\\[0.12in]\n22: \\begin{tabular}{c@{\\hspace{3cm}}c}\n23: \\textbf{\\large Dr.\\ Jyoti Prakash Singh} & \\textbf{\\large Mr.\\ Dubasi Pavan Kumar}\\\\\n24: Professor & Founder \\& CEO\\\\\n25: Dept.\\ of CSE, NIT Patna & VibeTensor\\\\\n26: \\end{tabular}\\\\[0.15in]\n27: \n28: \\includegraphics[width=0.3\\textwidth]{sections/NitP.jpeg}\\\\[0.15in]\n29: \n30: \\textbf{Department of Computer Science \\& Engineering}\\\\\n31: \\textbf{NATIONAL INSTITUTE OF TECHNOLOGY PATNA}\\\\\n32: \\textbf{Patna, India -- 800005}\\\\[0.12in]\n33: \\textbf{June 2026}\n34: \\end{titlepage}\n35: \n```\n\n`sections/certificate.tex` (full file, line-numbered):\n```\n1: \\pagebreak\n2: \\phantomsection\n3: \\cleardoublepage\n4: \\addcontentsline{toc}{chapter}{Certificate}\n5: \n6: \\begin{center}\n7: {\\bf \\large NATIONAL INSTITUTE OF TECHNOLOGY PATNA}\\\\ \\vspace{0.1in}\n8: {\\bf \\large INDIA, 800005}\n9: \\end{center}\n10: \n11: \\begin{figure}[h]\n12: \\centering\n13: \\includegraphics[width=0.3\\linewidth]{sections/NitP.jpeg}\n14: \\end{figure}\n15: \n16: \\begin{center}\n17: {\\bf \\large DEPARTMENT OF COMPUTER SCIENCE ENGINEERING}\n18: \\end{center}\n19: \n20: \\begin{center}\n21: \\large \\underline{\\fontsize{12.5}{16}\\selectfont \\textbf{CERTIFICATE}} \\\\\n22: \\vspace{0.1in}\n23: \\small This is to certify that the project entitled \\textbf{``Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems''} submitted by: \\\\ \\vspace{0.1in}\n24: \\textbf{Sai Pranay Bhamidi -- 2206119} \\\\ \\vspace{0.1in}\n25: \n26: in the partial fulfillment of the requirements for the award of degree of Bachelor of Technology in Computer Science and Engineering is an authentic work carried out as part of research and internship work under academic supervision and guidance.\n27: \\end{center}\n28: \n29: \n30: \\begin{flushleft}\n31: \\vspace{20mm}\n32: \\begin{tabular}{p{7cm}p{7cm}}\n33: \\rule{6cm}{0.15mm} & \\rule{6cm}{0.15mm} \\\\\n34: \\textbf{Dr.\\ Jyoti Prakash Singh} & \\textbf{Mr.\\ Dubasi Pavan Kumar} \\\\\n35: Professor & Founder \\& CEO \\\\\n36: Department of CSE, NIT Patna & Vibe Tensor \\\\[0.3cm]\n37: \\end{tabular}\n38: \n39: \\vspace{5mm}\n40: \\textbf{Date: June 2026}\n41: \n42: \\end{flushleft}\n43: \n44: \\vfill\n45: \\noindent\\rule{\\linewidth}{2pt}\n46: \n```\n\n`sections/internship_certificate.tex` (full file, line-numbered):\n```\n1: \\pagebreak\n2: \\phantomsection\n3: \\cleardoublepage\n4: \\addcontentsline{toc}{chapter}{Internship Certificate}\n5: \n6: %% =====================================================================\n7: %% Internship Certificate - VibeTensor Private Limited\n8: %% Document ID: VT/INTC/2026/SP-2206119 (ISO 9001:2015 7.5.2)\n9: %% Statutory letterhead per Section 12(3), Companies Act 2013:\n10: %% - Company name\n11: %% - CIN: U74909TS2025PTC197692\n12: %% - Registered office address\n13: %% - Email and website\n14: %% - Helpful additions: DPIIT, GSTIN\n15: %% =====================================================================\n16: \n17: \\noindent\\rule{\\linewidth}{2pt}\\\\[0.2in]\n18: \n19: %% --- Letterhead block ------------------------------------------------\n20: \\begin{center}\n21: {\\Large \\textbf{VIBETENSOR PRIVATE LIMITED}}\\\\[2pt]\n22: {\\small Reg. Office: 5-11-755/2, Sagara Colony Road No.\\ 2, Vidyaranyapuri,}\\\\\n23: {\\small Warangal, Hanamkonda, Telangana, India -- 506009}\\\\[2pt]\n24: {\\small CIN: U74909TS2025PTC197692 \\ \\ $|$ \\ \\ GSTIN: 36AAKCV9991Q1ZX \\ \\ $|$ \\ \\ DPIIT: DIPP206711}\\\\\n25: {\\small Email: info@vibetensor.com \\ \\ $|$ \\ \\ Website: www.vibetensor.com}\n26: \\end{center}\n27: \n28: \\vspace{0.15in}\n29: \\noindent\\rule{\\linewidth}{0.5pt}\\\\[0.1in]\n30: \n31: %% --- Title ----------------------------------------------------------\n32: \\begin{center}\n33: {\\Large \\textbf{\\underline{INTERNSHIP CERTIFICATE}}}\n34: \\end{center}\n35: \n36: \\vspace{0.1in}\n37: \n38: \\noindent\\textbf{Document ID:} VT/INTC/2026/SP-2206119 \\hfill \\textbf{Date of Issue:} 12 May 2026\n39: \n40: \\vspace{0.3in}\n41: \n42: %% --- Body -----------------------------------------------------------\n43: \\noindent\n44: \\textbf{TO WHOM IT MAY CONCERN}\n45: \n46: \\vspace{0.2in}\n47: \n48: \\noindent\n49: This is to certify that \\textbf{Mr.\\ Bhamidi Sai Pranay} (Roll No.\\ 2206119),\n50: a final-year student of the Bachelor of Technology programme in Computer\n51: Science and Engineering at the National Institute of Technology Patna, was\n52: engaged as a \\textbf{Software Development Engineering Intern} at\n53: \\textbf{VibeTensor Private Limited} for the period\n54: \\textbf{05 January 2026 to 27 June 2026}.\n55: \n56: \\vspace{0.2in}\n57: \n58: \\noindent\n59: During the internship, the candidate worked under the direct supervision of\n60: the undersigned and contributed to the following project:\n61: \n62: \\vspace{0.1in}\n63: \n64: \\noindent\n65: \\textbf{Project:} \\textit{Regulated AI Orchestration --- Integrating the\n66: Attestix Security Protocol into Multi-Agent AI Systems.}\n67: \n68: \\vspace{0.15in}\n69: \n70: \\noindent\n71: \\textbf{Scope of work completed by the candidate:}\n72: \n73: \\begin{itemize}\n74: \\setlength\\itemsep{2pt}\n75: \\item Designed and authored a shared, parameterised \\texttt{AttestixManager} integration layer used uniformly across four domain pipelines.\n76: \\item Implemented four end-to-end regulated multi-agent pipelines (Healthcare, Finance, ESG Audit, Legal Advisory) using LangChain, LangGraph, CrewAI, Semantic Kernel and the OpenAI Agents SDK.\n77: \\item Engineered a provider-agnostic LLM factory enabling the same pipelines to run on either Groq llama-3.3-70b-versatile or AWS Bedrock \\texttt{us.meta.llama3-3-70b-instruct-v1:0}.\n78: \\item Built an automated regression test suite (13 pytest cases, 13/13 passing) covering identity provisioning, UCAN delegation, conformity gating, Merkle chain integrity, mandatory token enforcement, and OWASP LLM01 prompt-injection mitigation.\n79: \\item Designed a golden-prompt evaluation harness (20 fixtures, 7 adversarial safety probes) and captured numeric evaluation scores against the regulated pipelines.\n80: \\item Authored an Article 10 / Article 11 / Article 43 / Annex V coverage layer aligned with the European Union Artificial Intelligence Act (Regulation (EU) 2024/1689).\n81: \\item Identified two engineering defects in the upstream Attestix library during integration testing (load-order race condition; EAS gas-limit insufficiency on Base Sepolia) and verified the corresponding upstream fixes end-to-end.\n82: \\item Anchored a regulated audit trail to the Base Sepolia Layer-2 network via the Ethereum Attestation Service, with verifiable transaction record retained as part of the project deliverables.\n83: \\end{itemize}\n84: \n85: \\vspace{0.15in}\n86: \n87: \\noindent\n88: The above work was carried out by the candidate as part of a structured\n89: internship engagement at VibeTensor Private Limited and is reflected in the\n90: project report submitted in partial fulfilment of the requirements for the\n91: award of the Bachelor of Technology degree.\n92: \n93: \\vspace{0.2in}\n94: \n95: \\noindent\n96: \\textbf{Conduct and disposition:} During the internship the candidate\n97: demonstrated technical proficiency, intellectual honesty regarding the\n98: boundary between his own contribution and the underlying Attestix library\n99: (which is the intellectual property of VibeTensor Private Limited and predates\n100: the candidate's engagement), and adherence to the company's code of conduct,\n101: information-security policies, and data-handling guidelines.\n102: \n103: \\vspace{0.2in}\n104: \n105: \\noindent\n106: \\textbf{Intellectual property statement:} The Attestix Protocol library used\n107: in the project is the intellectual property of VibeTensor Private Limited and\n108: its founder, and predates the candidate's internship. The integration layer,\n109: domain pipelines, test suite, evaluation harness, benchmarks, and report\n110: authored by the candidate during this engagement are the contributions\n111: recognised in this certificate, governed by the executed internship and\n112: intellectual-property assignment agreements between VibeTensor Private\n113: Limited and the candidate.\n114: \n115: \\vspace{0.2in}\n116: \n117: \\noindent\n118: We wish him every success in his future academic and professional pursuits.\n119: \n120: \\vspace{0.5in}\n121: \n122: %% --- Signature block ------------------------------------------------\n123: \\begin{flushleft}\n124: \\rule{6cm}{0.4pt}\\\\[0.1in]\n125: \\textbf{Mr.\\ Dubasi Pavan Kumar}\\\\\n126: Founder and Chief Executive Officer\\\\\n127: VibeTensor Private Limited\\\\\n128: Email: pavan@vibetensor.com\\\\[0.2in]\n129: \\textit{(Affix company seal)}\n130: \\end{flushleft}\n131: \n132: \\vfill\n133: \\noindent\\rule{\\linewidth}{0.5pt}\\\\\n134: {\\footnotesize VibeTensor Private Limited \\ $|$ \\ CIN U74909TS2025PTC197692 \\ $|$ \\ Document aligned with ISO 9001:2015 clause 7.5.2}\\\\\n135: \\noindent\\rule{\\linewidth}{2pt}\n136: \n```\n\n`sections/1declaration.tex` (full file, line-numbered):\n```\n1: \\pagebreak\n2: \\phantomsection\n3: \\cleardoublepage\n4: \\addcontentsline{toc}{chapter}{Declaration}\n5: \n6: \\noindent\\rule{\\linewidth}{2pt}\n7: \\begin{center}\n8: {\\bf \\Large DECLARATION AND COPYRIGHT TRANSFER}\\\\\n9: \\par\\vspace{5mm}\n10: \\end{center}\n11: \n12: \\noindent\n13: I, \\textbf{Sai Pranay Bhamidi}, Roll No.\\ \\textbf{2206119}, a registered candidate for Undergraduate Programme (B.Tech.) under Department of Computer Science and Engineering of National Institute of Technology Patna, declare that this project report titled \\textbf{``Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems''} is my own original research and internship-based project work carried out during the VIII Semester under the supervision and guidance of \\textbf{Dr.\\ Jyoti Prakash Singh}, Professor, Department of CSE, NIT Patna, and \\textbf{Mr.\\ Dubasi Pavan Kumar}, Founder \\& CEO, VibeTensor, and has not been presented and will not be presented to any other University/Institute for a similar or any other Degree award.\n14: \n15: \\vspace{0.8cm}\n16: \n17: \\noindent\n18: I further confirm that for all third-party copyright material used in this project report, including figures, datasets, references, and electronic resources, proper acknowledgment and citation have been provided wherever applicable.\n19: \n20: \\vspace{0.8cm}\n21: \n22: \\noindent\n23: I hereby transfer exclusive copyright for this project report to NIT Patna. The following rights are reserved by the author:\n24: \n25: \\vspace{0.3cm}\n26: \n27: \\begin{enumerate}\n28: \\item[(a)] The right to use, free of charge, all or part of this work in future academic, research, or publication activities with proper acknowledgment.\n29: \n30: \\vspace{0.2cm}\n31: \n32: \\item[(b)] The right to reproduce this project report for academic and non-commercial purposes provided the copies are not offered for sale.\n33: \\end{enumerate}\n34: \n35: \\vspace{1.5cm}\n36: \n37: \\noindent\n38: Signature of the candidate:\n39: \n40: \\vspace{0.3cm}\n41: \n42: \\noindent\n43: \\rule{6cm}{0.15mm}\\\\[0.2cm]\n44: \\textbf{Sai Pranay Bhamidi}\\\\[0.2cm]\n45: Date: June 2026\n46: \n47: \\vfill\n48: \\noindent\\rule{\\linewidth}{2pt}\n49: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: \n3: \\input{file-setup}\n4: \n5: \\begin{document}\n6: \n7: \\input{front}\n8: \n9: \\pagenumbering{roman}\n10: \n11: \\input{sections/certificate}\n12: \\input{sections/internship_certificate}\n13: \\input{sections/1declaration}\n14: \\input{sections/2acknow}\n15: \\input{sections/dedication}\n16: \\input{sections/3abstract}\n17: \n18: \\tableofcontents\n19: \n20: \\vspace{0.5cm}\n21: \n22: \\listoftables\n23: \n24: \\listoffigures\n25: \n26: \\pagebreak\n27: \\phantomsection\n28: \\cleardoublepage\n29: \\addcontentsline{toc}{chapter}{List of Abbreviations}\n30: \n31: \\vspace*{-\\topskip}\n32: \\rule{\\linewidth}{2pt} \\\\\n33: \\vspace{0.1in}\n34: \\begin{center}\n35: {\\bf \\Large LIST OF ABBREVIATIONS}\\\\\n36: \\par\\vspace{5mm}\n37: \\end{center}\n38: \n39: \\begin{tabular}{ll}\n40: AI & Artificial Intelligence \\\\\n41: API & Application Programming Interface \\\\\n42: CHF & Congestive Heart Failure \\\\\n43: CI & Continuous Integration \\\\\n44: CIN & Corporate Identification Number \\\\\n45: CMO & Chief Medical Officer \\\\\n46: CSE & Computer Science and Engineering \\\\\n47: CSV & Comma-Separated Values \\\\\n48: DID & Decentralised Identifier \\\\\n49: DPA & Data Processing Agreement \\\\\n50: DPDP & Digital Personal Data Protection (Act, India 2023) \\\\\n51: EAS & Ethereum Attestation Service \\\\\n52: EIP & Ethereum Improvement Proposal \\\\\n53: ESG & Environmental, Social and Governance \\\\\n54: EU & European Union \\\\\n55: EVM & Ethereum Virtual Machine \\\\\n56: GDPR & General Data Protection Regulation (EU 2016/679) \\\\\n57: IAM & Identity and Access Management \\\\\n58: JTI & JWT ID (token unique identifier) \\\\\n59: JWT & JSON Web Token \\\\\n60: L2 & Layer 2 (Blockchain) \\\\\n61: LLM & Large Language Model \\\\\n62: MAS & Multi-Agent System \\\\\n63: OWASP & Open Worldwide Application Security Project \\\\\n64: PHI & Protected Health Information \\\\\n65: PII & Personally Identifiable Information \\\\\n66: PoC & Proof of Concept \\\\\n67: RFC & Request for Comments \\\\\n68: SCC & Standard Contractual Clauses \\\\\n69: SDK & Software Development Kit \\\\\n70: SHA & Secure Hash Algorithm \\\\\n71: SSRF & Server-Side Request Forgery \\\\\n72: TX & Transaction (hash) \\\\\n73: UAIT & Universal Agent Identity Token \\\\\n74: UCAN & User Controlled Authorization Networks \\\\\n75: UID & Unique Identifier \\\\\n76: VC & Verifiable Credential \\\\\n77: W3C & World Wide Web Consortium \\\\\n78: \\end{tabular}\n79: \n80: \\pagenumbering{arabic}\n81: \n82: \\input{sections/4introduction}\n83: \\input{sections/5literatureSurvey}\n84: \\input{sections/6methodology}\n85: \\input{sections/7conclusion}\n86: \\input{sections/ref}\n87: \\input{sections/appendix}\n88: \n89: \\end{document}\n90: \n```\n\nCompile log (tail):\n```\n10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>\nOutput written on main.pdf (56 pages, 2892971 bytes).\nPDF statistics:\n 527 PDF objects out of 1000 (max. 8388607)\n 409 compressed objects within 5 object streams\n 177 named destinations out of 1000 (max. 500000)\n 61 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\textbf{June 2026}\n\n\\end{titlepage}\n=======\n \\textbf{June 2026}\n\\end{titlepage}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\textbf{\\large Dr.\\ Jyoti Prakash Singh} & \\textbf{\\large Mr.\\ Dubasi Pavan Kumar} \\\\\n Professor & Founder \\& CEO \\\\\n Dept.\\ of CSE, NIT Patna & VibeTensor \\\\\n=======\n \\textbf{\\large Dr.\\ Jyoti Prakash Singh} & \\textbf{\\large Mr.\\ Dubasi Pavan Kumar}\\\\\n Professor & Founder \\& CEO\\\\\n Dept.\\ of CSE, NIT Patna & VibeTensor\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n {\\normalsize \\textit{Internship Project Report}}\\\\[0.15in]\n \\Large \\textbf{Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems}\\\\[0.15in]\n \\large{ \\textbf{A Project Report} \\\\[0.12in] {Submitted in Partial Fulfillment of the Requirements for the \\\\ {Award of the Degree of}\\\\[0.12in] \\textsc{\\textbf{BACHELOR OF TECHNOLOGY}} \\\\\n \\textit{In}\\\\\n \\textbf{Computer Science \\& Engineering}\\\\[0.12in]\n }\\\\[0.12in]\n \\normalsize \\textit{Submitted by} \\\\[0.1in]\n \\textbf{Sai Pranay Bhamidi} \\\\\n Roll No.\\ 2206119\\\\\n\n \\vspace{.12in}\n \\textit{Under the supervision of}\\\\[0.12in]\n=======\n {\\normalsize \\textit{Internship Project Report}}\\\\[0.15in]\n\n {\\Large \\textbf{Regulated AI Orchestration: Integrating the Attestix Security Protocol into Multi-Agent AI Systems}}\\\\[0.20in]\n\n {\\large\n \\textbf{A Project Report}\\\\[0.12in]\n Submitted in Partial Fulfillment of the Requirements for the\\\\\n Award of the Degree of\\\\[0.12in]\n \\textsc{\\textbf{BACHELOR OF TECHNOLOGY}}\\\\\n \\textit{In}\\\\\n \\textbf{Computer Science \\& Engineering}\\\\[0.24in]\n }\n\n \\normalsize\\textit{Submitted by}\\\\[0.1in]\n \\textbf{Sai Pranay Bhamidi}\\\\\n Roll No.\\ 2206119\\\\[0.12in]\n\n \\textit{Under the supervision of}\\\\[0.12in]\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[a4paper,margin=1in]{geometry}\n=======\n\\usepackage[utf8]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage[a4paper,margin=1in]{geometry}\n>>>>>>> REPLACE\n", "id": "github_ascender1729__attestix-multiagent-integration-fixed__921f789", "doc": "github_multi/ascender1729__attestix-multiagent-integration-fixed__921f789", "mutation": "real", "source": "github", "repo": "ascender1729/attestix-multiagent-integration-fixed", "sha": "921f7890079101fb0f97f8536dde4e473a8ade11", "parent_sha": "98b1ecc2262a7fe9e025aad48e7a8fb3d605de79", "license": "Apache-2.0", "url": "https://github.com/ascender1729/attestix-multiagent-integration-fixed/commit/921f7890079101fb0f97f8536dde4e473a8ade11", "changed_files": ["file-setup.tex", "front.tex"], "original_root": "main.tex", "n_files": 15, "engine": "pdflatex", "error_category": "LaTeX Error: There's no line here to end.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: LaTeX Error: There's no line here to end.\n- line 29: Missing } inserted.\n\nProject files:\n- History.png\n- archi.drawio.png\n- carbon_before_p1.png\n- carbon_before_p2.png\n- carbon_merkle_blockchain.png\n- carbon_provenance_p1.png\n- carbon_provenance_p2.png\n- carbon_regulated_p1.png\n- carbon_regulated_p2.png\n- carbon_regulated_result.png\n- easscan.png\n- file-setup.tex\n- front.tex\n- main.tex\n- sections/1declaration.tex\n- sections/2acknow.tex\n- sections/3abstract.tex\n- sections/4introduction.tex\n- sections/5literatureSurvey.tex\n- sections/6methodology.tex\n- sections/7conclusion.tex\n- sections/NitP.jpeg\n- sections/appendix.tex\n- sections/certificate.tex\n- sections/dedication.tex\n- sections/internship_certificate.tex\n- sections/internship_certificate_PRINT_NOTES.md\n- sections/ref.tex\n- ssd_architecture.png\n- workflow.png\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: \n3: \\input{file-setup}\n4: \n5: \\begin{document}\n6: \n7: \\input{front}\n8: \n9: \\pagenumbering{roman}\n10: \n11: \\input{sections/certificate}\n12: \\input{sections/internship_certificate}\n13: \\input{sections/1declaration}\n14: \\input{sections/2acknow}\n15: \\input{sections/dedication}\n16: \\input{sections/3abstract}\n17: \n18: \\tableofcontents\n19: \n20: \\vspace{0.5cm}\n21: \n22: \\listoftables\n23: \n24: \\listoffigures\n25: \n26: \\pagebreak\n27: \\phantomsection\n28: \\cleardoublepage\n29: \\addcontentsline{toc}{chapter}{List of Abbreviations}\n30: \n31: \\vspace*{-\\topskip}\n32: \\rule{\\linewidth}{2pt} \\\\\n33: \\vspace{0.1in}\n34: \\begin{center}\n35: {\\bf \\Large LIST OF ABBREVIATIONS}\\\\\n36: \\par\\vspace{5mm}\n37: \\end{center}\n38: \n39: \\begin{tabular}{ll}\n40: AI & Artificial Intelligence \\\\\n41: API & Application Programming Interface \\\\\n42: CHF & Congestive Heart Failure \\\\\n43: CI & Continuous Integration \\\\\n44: CIN & Corporate Identification Number \\\\\n45: CMO & Chief Medical Officer \\\\\n46: CSE & Computer Science and Engineering \\\\\n47: CSV & Comma-Separated Values \\\\\n48: DID & Decentralised Identifier \\\\\n49: DPA & Data Processing Agreement \\\\\n50: DPDP & Digital Personal Data Protection (Act, India 2023) \\\\\n51: EAS & Ethereum Attestation Service \\\\\n52: EIP & Ethereum Improvement Proposal \\\\\n53: ESG & Environmental, Social and Governance \\\\\n54: EU & European Union \\\\\n55: EVM & Ethereum Virtual Machine \\\\\n56: GDPR & General Data Protection Regulation (EU 2016/679) \\\\\n57: IAM & Identity and Access Management \\\\\n58: JTI & JWT ID (token unique identifier) \\\\\n59: JWT & JSON Web Token \\\\\n60: L2 & Layer 2 (Blockchain) \\\\\n61: LLM & Large Language Model \\\\\n62: MAS & Multi-Agent System \\\\\n63: OWASP & Open Worldwide Application Security Project \\\\\n64: PHI & Protected Health Information \\\\\n65: PII & Personally Identifiable Information \\\\\n66: PoC & Proof of Concept \\\\\n67: RFC & Request for Comments \\\\\n68: SCC & Standard Contractual Clauses \\\\\n69: SDK & Software Development Kit \\\\\n70: SHA & Secure Hash Algorithm \\\\\n71: SSRF & Server-Side Request Forgery \\\\\n72: TX & Transaction (hash) \\\\\n73: UAIT & Universal Agent Identity Token \\\\\n74: UCAN & User Controlled Authorization Networks \\\\\n75: UID & Unique Identifier \\\\\n76: VC & Verifiable Credential \\\\\n77: W3C & World Wide Web Consortium \\\\\n78: \\end{tabular}\n79: \n80: \\pagenumbering{arabic}\n81: \n82: \\input{sections/4introduction}\n83: \\input{sections/5literatureSurvey}\n84: \\input{sections/6methodology}\n85: \\input{sections/7conclusion}\n86: \\input{sections/ref}\n87: \\input{sections/appendix}\n88: \n89: \\end{document}\n90: \n```\n\nCompile log (tail):\n```\n10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb>\nOutput written on main.pdf (56 pages, 2892971 bytes).\nPDF statistics:\n 527 PDF objects out of 1000 (max. 8388607)\n 409 compressed objects within 5 object streams\n 177 named destinations out of 1000 (max. 500000)\n 61 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/ascender1729/attestix-multiagent-integration-fixed"} {"bib": false, "lane": "project", "file_edits": [{"file": "results.tex", "search": "\\caption{\\textit{Near Future} ($+0.25$--$+1.2\\,\\gya$) top-10: effectively identical to \\textit{Present} across the entire stable plateau.", "replace": "\\caption{\\textit{Near Future} ($+0.25$--$+1.2$\\,\\gya$) top-10: effectively identical to \\textit{Present} across the entire stable plateau.", "type": "real"}], "reported_file": "main.tex", "fix_files": ["results.tex"], "single_shot_visible": false, "error_lines": [{"line": 359, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "st/font\ns/type1/public/cm-super/sfbx1200.pfb>\nOutput written on main.pdf (73 pages, 14914064 bytes).\nPDF statistics:\n 776 PDF objects out of 1000 (max. 8388607)\n 575 compressed objects within 6 object streams\n 222 named destinations out of 1000 (max. 500000)\n 81 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 359: Missing $ inserted.\n\nProject files:\n- CollegeShields/Darwin.png\n- CollegeShields/Official-logo_IoA-University.png\n- abstract.tex\n- apalike-doi.bst\n- appendix_assumptions.tex\n- appendix_bayes_pedagogy.tex\n- appendix_constants.tex\n- appendix_dragonfly.tex\n- appendix_features.tex\n- appendix_geo_scores.tex\n- appendix_lit_review.tex\n- appendix_missions.tex\n- appendix_notation.tex\n- appendix_priors.tex\n- discussion.tex\n- images/beta_update_figure.png\n- images/epoch_feature_timeline.png\n- images/feature_panel_present.png\n- images/fig_bayesian_update.png\n- images/fig_hdi_comparison.png\n- images/future_epoch_bathymetry.png\n- images/location_feature_spider.png\n- images/pipeline_flowchart.png\n- images/sensitivity_analysis.png\n- images/solar_system_comparison.png\n- images/temporal_habitability_trend.png\n- images/thesis_frame_002.png\n- images/thesis_frame_017.png\n- images/thesis_frame_029.png\n- images/thesis_frame_036.png\n- images/thesis_frame_068.png\n- introduction.tex\n- main.tex\n- methods.tex\n- references.bib\n- results.tex\n- version.tex\n\nOther project files (edit them with ):\n\n`version.tex` (full file, line-numbered):\n```\n1: %% version.tex — Thesis version tracking\n2: %% Update this file for each revision.\n3: \\newcommand{\\thesisversion}{v24}\n4: \\newcommand{\\thesisdate}{8th May 2026}\n5: \n```\n\n`abstract.tex` (full file, line-numbered):\n```\n1: %% ============================================================\n2: %% abstract.tex — Thesis Abstract\n3: %% ============================================================\n4: %% Drop-in note: this file provides the abstract text inside a\n5: %% standard `abstract` environment. If your thesis class instead\n6: %% expects an unnumbered chapter, replace the environment with:\n7: %% \\chapter*{Abstract}\n8: %% \\addcontentsline{toc}{chapter}{Abstract}\n9: %% ... text ...\n10: %% ============================================================\n11: \n12: \\chapter*{Abstract}\n13: \\addcontentsline{toc}{chapter}{Abstract}\n14: \n15: Saturn's moon \\titan{} is the only known world beyond Earth with stable\n16: surface liquids, a dense organic-rich atmosphere, and a subsurface water\n17: reservoir, making it a site where prebiotic chemistry can be studied at\n18: planetary scale over geological time. Previous habitability assessments\n19: have been largely qualitative or restricted to a single location or epoch.\n20: This thesis develops the first quantitative, spatially-resolved, multi-epoch\n21: habitability map of \\titan{}'s surface, combining eight Cassini observational\n22: proxy features (liquid hydrocarbon, organic abundance, chemical energy,\n23: methane cycling, surface--atmosphere exchange, topographic complexity,\n24: geomorphological diversity, and subsurface water access) within a Bayesian\n25: Beta-conjugate framework. The posterior habitability probability\n26: $P(H \\mid \\featurevec)$ is evaluated at every pixel of a global grid\n27: (\\SI{4490}{\\metre\\per\\text{px}}, 6.49 million pixels) at five temporal anchor\n28: epochs from the Late Heavy Bombardment ($-3.5\\gya$) to the red-giant ocean\n29: ($+5.9\\gya$), with 95\\% credible intervals at each location.\n30: \n31: At the present epoch, north polar lake margins are the highest-scoring\n32: environments: Towada Lacus ranks first ($P(H) = 0.573$), driven by the highest\n33: spectrally resolved organic abundance of any polar lake combined with surface\n34: liquid and active methane cycling. The temporal trajectory is non-monotonic,\n35: passing through three regimes: organic-accumulation dominance during the\n36: bombardment, polar-lake dominance from $-1.0\\gya$ through the present, and a\n37: global water--ammonia ocean from $+5.1\\gya$ in which former polar basins again\n38: lead (Uvs Lacus, $P(H) = 0.713$). A transient solvent-free interval of\n39: $\\sim$1.1\\,Gyr separates the hydrocarbon and water-ocean regimes. Applied as\n40: an external check, the framework independently identifies Selk crater, the\n41: \\dragonfly{} landing site, as the most geomorphologically diverse equatorial\n42: location ($f_7 = 0.629$, $6.8\\times$ the global median) from Cassini data\n43: alone. Throughout, the maps quantify the co-occurrence of the physical and\n44: chemical preconditions for life, not the presence of life or the likelihood of\n45: its origin.\n46: \n47: \\vspace{1em}\n48: \\noindent\\textbf{Keywords:} Cassini; astrobiology; ocean worlds; prebiotic chemistry; methane lakes; subsurface ocean;\n49: Selk crater; VIMS; synthetic aperture radar; planetary science; acetylenotrophy; \\titan{}; Beta-conjugate; \n50: habitability; Bayesian inference; multi-epoch; temporal evolution; \\dragonfly{}\n51: \n```\n\n`introduction.tex` (head and lines matching the log, line-numbered):\n```\n...\n4: \\chapter{Introduction}\n5: \\label{ch:introduction}\n6: \n7: \\section{Titan as an Astrobiological Target}\n8: \\label{sec:search_context}\n9: \n10: The search for habitable environments beyond Earth has increasingly focused on icy ocean worlds in the outer solar system. Among these, Saturn's moon \\titan{} is unusual in several respects.\n11: It is the only moon with a dense atmosphere (dominated by molecular nitrogen\n12: at 1.467\\,bar surface pressure and 93.65\\,K; \\citealt{Fulchignoni2005}, Appendix~\\ref{app:constants}) and the\n13: only known extraterrestrial world to host stable surface liquids\n14: \\citep{Stofan2007}, completing a full precipitation--evaporation--lake cycle\n15: structurally analogous to Earth's hydrological cycle. Its atmosphere\n16: continuously produces complex organic tholins at\n17: $\\sim5\\times10^{-14}$\\,g\\,cm$^{-2}$\\,s$^{-1}$ \\citep{Lavvas2011}, building\n18: a global organic sediment layer over $\\sim$4\\,Gyr \\citep{Lorenz2008}.\n19: At depth, a subsurface water body at $\\sim$55--80\\,km was inferred from the\n20: tidal Love number $k_2 = 0.589\\pm0.150$ \\citep{Iess2012}. A 2025 reanalysis of the same Cassini radiometric data found interior tidal dissipation of $\\sim$3--4\\,TW inconsistent with a continuous global ocean, pointing instead to a thick slushy high-pressure ice layer with isolated pockets of liquid water \\citep{Petricca2025}. Tidal heating within this slushy layer maintains liquid water pockets and may generate brine conduits through the ice shell, as investigated by \\citet{charlotte}. The subsurface water access precondition used in this thesis (Section~\\ref{sec:defining_habitability}) is constructed to be agnostic to this distinction: it depends on tidally-driven conduits reaching the surface, a mechanism both the continuous-ocean and slushy-pocket models support (Section~\\ref{sec:features}). Together, the cycling solvent, the large organic inventory, and the subsurface water make \\titan{} a site where prebiotic chemistry can be studied at planetary scale over geological time.\n21: \n22: \\section{The Physical Environment}\n23: \\label{sec:titan_environment}\n24: \n25: The atmosphere ($\\sim$94\\% \\ce{N2}, 5.65\\% \\ce{CH4}; \\citealt{Niemann2005})\n26: sustains a methane cycle with observed equatorial rainfall \\citep{Turtle2011},\n27: fluvial channel networks \\citep{Miller2021channels}, and polar hydrocarbon\n28: seas (Kraken, Ligeia, and Punga Mare) containing $\\sim$70{,}000\\,km$^3$ of\n29: liquid methane--ethane \\citep{Mastrogiuseppe2019,Malaska2025}. The lake distribution is markedly asymmetric: the north polar region hosts hundreds of filled lakes and seas covering $\\sim$1.6\\% of the global surface, while equivalent southern latitudes are largely devoid of standing liquid \\citep{Aharonson2009}. This hemispheric imbalance arises from the eccentricity of Saturn's orbit, which makes northern summers longer and milder than southern summers, driving net methane transport from south to north over Milankovitch-like cycles of $\\sim$45{,}000\\,yr \\citep{Aharonson2009}. The 45{,}000\\,yr oscillation is far shorter than the spacing between the epochs modelled in this thesis (Section~\\ref{sec:scope}), so the present-epoch north-polar dominance shown in the habitability maps should be read as a snapshot of the current phase of this cycle, not a permanent feature of \\titan{}'s surface. The surface is geologically diverse: equatorial dune fields ($\\sim$17\\% by SAR area), plains\n30: ($\\sim$65\\%), labyrinth terrain, impact craters, and mountains, as classified\n31: by the \\citet{Lopes2019} global geomorphological map that\n32: provides the terrain classification underpinning this thesis.\n33: \n```\n\n`methods.tex` (head and lines matching the log, line-numbered):\n```\n...\n4: \\chapter{Methods}\n5: \\label{ch:methods}\n6: \n7: \\section{Overview of the Analytical Approach}\n8: \\label{sec:overview}\n9: \n10: The framework proceeds in four analytical steps: (1) extraction of eight habitability-proxy features from the Cassini observational archive (Section~\\ref{sec:features}); (2) Bayesian conjugate updating to produce a posterior habitability probability map at each epoch (Section~\\ref{sec:bayes}); (3) temporal scaling of features across five anchor epochs and 74 intermediate geological epochs from $-3.8\\gya$ to $+6.5\\gya$ (Sections~\\ref{sec:temporal_configs}--\\ref{sec:multi_epoch}); and (4) ranking of named surface sites by posterior probability. These analytical steps are implemented within a five-stage processing pipeline (data acquisition, preprocessing, feature extraction, Bayesian inference, and outputs; Figure~\\ref{fig:pipeline}), in which steps (1) and (2) above correspond to the feature-extraction and Bayesian-inference stages. The posterior is evaluated at every pixel of the canonical equirectangular grid, producing global maps at each epoch from which habitable-zone boundaries, site rankings, and temporal trajectories can be extracted. Acronyms, notation, and the full data-source catalogue are defined in Appendix~\\ref{app:notation}.\n11: \n12: The analysis is applied at \\SI{4490}{\\metre\\per\\text{px}} resolution on a\n13: canonical equirectangular grid covering the full globe (1802 pixels in\n14: latitude $\\times$ 3603 pixels in longitude = 6.49$\\times10^6$ pixels),\n15: using a west-positive longitude convention consistent with all Cassini raster\n16: products. Raw GeoTIFF data products are reprojected onto this grid using \\texttt{rasterio.warp.reproject} with bilinear resampling; polar inset maps use an oblique stereographic projection \\citep{Snyder1987} (Appendix~\\ref{sec:projection}). The grid resolution corresponds to $\\sim$20\\,km at the equator,\n17: comparable to the spatial scale of terrain-class boundaries in the \\citet{Lopes2019}\n18: geomorphological map and sufficient to resolve\n19: individual lake margins, crater structures, and dune-field boundaries.\n20: Figure~\\ref{fig:pipeline} provides a schematic overview.\n21: \n22: \\begin{figure}[H]\n23: \\centering\n24: \\includegraphics[width=\\textwidth]{images/pipeline_flowchart.png}\n25: \\caption{Schematic overview of the five-stage Titan habitability analysis\n26: pipeline. All eight habitability-proxy features are extracted in Stage 3\n27: and combined in the Bayesian posterior update of Stage 4 to produce\n28: $P(H \\mid \\featurevec)$ maps at each of the five temporal configurations.}\n29: \\label{fig:pipeline}\n30: \\end{figure}\n31: \n32: \\section{Observational Data Sources}\n33: \\label{sec:data}\n```\n\n`results.tex` (head and lines matching the log, line-numbered):\n```\n...\n6: \\chapter{Results}\n7: \\label{ch:results}\n8: \n9: \\section{Overview and Temporal Habitability Trends}\n10: \\label{sec:results_overview}\n11: \n12: The Bayesian framework produces posterior mean habitability maps $P(H \\mid \\featurevec)$ at five temporal anchor epochs and, via the multi-epoch reconstruction (Section~\\ref{sec:multi_epoch}), at 74 intermediate epochs spanning $-3.8$ to $+6.5\\gya$. Each anchor epoch uses an epoch-specific Bayesian model with $\\kappa=5$, $\\lambda=6$: the \\textit{Present} and \\textit{Near Future} epochs use the 8-feature formula ($\\mu_0=0.331$, $P_\\text{max}=0.696$); the \\textit{Past} and \\textit{Lake Formation} epochs add impact-melt proximity and cryovolcanic flux features (9 features, $\\mu_0 \\approx 0.29$--$0.33$); and the \\textit{Future} epoch uses a transformed 8-feature set reflecting the water--ammonia ocean regime ($\\mu_0=0.695$, $P_\\text{max}=0.861$), producing a maximum of $P(H)=0.713$ at Uvs Lacus. The 95\\% CI for Selk crater (the most-studied individual site) is $[0.04, 0.49]$, representative of the wide credible intervals arising from the moderate information content of the Cassini observables. The five epochs are presented chronologically below.\n13: \n14: Figure~\\ref{fig:temporal_trend} shows the temporal trajectory. The global median rises from 0.271 at the LHB to 0.302 at \\textit{Lake Formation} ($-1.0\\gya$), then increases to 0.316 at the \\textit{Present} epoch as the polar lake system fully establishes. This level is maintained through the \\textit{Near Future} ($+0.25\\gya$), before a transient minimum centred on $\\sim$$+5.0\\gya$ when the polar seas have evaporated but the water--ammonia eutectic has not yet been crossed: a $\\sim$1.1\\,Gyr interval during which \\titan{} is transiently solvent-free. The global mean then rises to its maximum of 0.530 at the \\textit{Future} epoch ($+5.9\\gya$) as the red-giant ocean covers the surface.\n15: \n16: The north polar/equatorial ratio tracks the dominance of the liquid-hydrocarbon feature superimposed on the VIMS organic-abundance signal: $\\sim$1.42 at LHB (organic lead alone, no polar seas), rising to $\\sim$1.51 at \\textit{Present} (organic + lake dominance), and declining to $\\sim$1.40 at the \\textit{Future} global ocean (uniform liquid, but polar organic advantage persists). The trajectory is non-monotonic, passing through three qualitatively distinct regimes: (i)~organic-accumulation dominance during the LHB, where polar proto-basins lead on VIMS-derived $f_2$ alone; (ii)~polar-lake dominance from $-1.0\\gya$ through the present, where the liquid-hydrocarbon feature amplifies the existing polar lead; and (iii)~global ocean dominance from $+5.1\\gya$, where liquid availability is globally uniform and the residual polar lead is driven by the higher organic stockpile at former polar basin sites.\n17: \n18: \\begin{figure}[H]\n19: \\centering\n20: \\includegraphics[width=\\textwidth]{images/temporal_habitability_trend.png}\n21: \\caption{Global and regional mean posterior habitability $P(H \\mid \\featurevec)$\n22: as a function of geological time from the LHB peak ($-3.8\\gya$) to the\n23: post-red-giant refreezing epoch ($+6.5\\gya$).\n24: Black solid line: global mean. Blue dashed: north polar region\n25: ($>$60\\textdegree{}N). Orange dash-dot: equatorial belt\n26: ($|\\text{lat}| < 30\\textdegree{}$). Red dotted: crater sites.\n27: Vertical dashed lines mark key epoch boundaries; blue shading\n28: indicates the red-giant ocean window ($+5.1$--$6.0\\gya$).}\n29: \\label{fig:temporal_trend}\n30: \\end{figure}\n31: \n32: The maps in this chapter quantify\n33: \\textbf{present-day solvent habitability}: the capacity of each\n34: location to support liquid-solvent chemistry. At the present epoch,\n35: they correctly identify north polar lake shores as the globally\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %% ============================================================\n2: %% main.tex — Titan Habitability MPhil Thesis\n3: %% Compile: pdflatex main && bibtex main && pdflatex main && pdflatex main\n4: %% ============================================================\n5: \\documentclass[11pt,a4paper,twoside]{report}\n6: \\raggedbottom\n7: \n8: \\usepackage[utf8]{inputenc}\n9: \\usepackage[T1]{fontenc}\n10: % lmodern fonts not in this TeX installation; using CM\n11: \\usepackage[margin=2.5cm,inner=3.2cm]{geometry}\n12: \\usepackage{setspace}\n13: \\usepackage{etoolbox}\n14: \\BeforeBeginEnvironment{tabular}{\\singlespacing} % single space for tables \n15: % microtype disabled (requires scalable fonts)\n16: % \\usepackage{microtype}\n17: \\usepackage{emptypage}\n18: \\usepackage{amsmath,amssymb,mathtools}\n19: \\usepackage[version=4]{mhchem}\n20: \\usepackage{textcomp} % provides \\textdegree; do NOT redefine \\degree\n21: \\usepackage{bm}\n22: \\usepackage{graphicx}\n23: \\usepackage{float}\n24: \\usepackage[labelfont=bf,font=small]{caption}\n25: \\usepackage{booktabs}\n26: \\usepackage{longtable}\n27: \\usepackage{multirow}\n28: \\usepackage{array}\n29: \\usepackage{tabularx}\n30: \\usepackage{makecell}\n31: \\usepackage[dvipsnames]{xcolor}\n32: \\usepackage[\n33: colorlinks=true,\n34: linkcolor=MidnightBlue,\n35: citecolor=ForestGreen,\n36: urlcolor=Maroon,\n37: pdfauthor={Chris Meadows},\n38: pdftitle={Bayesian Surface Habitability Mapping of Titan},\n39: ]{hyperref}\n40: \\usepackage{doi} % renders doi fields as clickable hyperlinks\n41: \\usepackage{cleveref}\n42: \\usepackage[round,authoryear,sort&compress]{natbib}\n43: \\usepackage{fancyhdr}\n44: \\usepackage{enumitem}\n45: \\usepackage{siunitx}\n46: \\sisetup{separate-uncertainty=true,per-mode=symbol}\n47: \n48: % Reduce the excessive vertical space before chapter titles\n49: \\usepackage{titlesec}\n50: \\titleformat{\\chapter}[hang]\n51: {\\normalfont\\LARGE\\bfseries}{\\thechapter}{1em}{}\n52: \\titlespacing*{\\chapter}{0pt}{20pt}{16pt}\n53: \n54: \\pagestyle{fancy}\n55: \\fancyhf{}\n56: \\fancyhead[LE]{\\small\\itshape\\leftmark}\n57: \\fancyhead[RO]{\\small\\itshape\\rightmark}\n58: \\fancyfoot[C]{\\thepage}\n59: \\renewcommand{\\headrulewidth}{0.4pt}\n60: \n61: % Custom commands\n62: \\newcommand{\\titan}{Titan}\n63: \\newcommand{\\cassini}{\\textit{Cassini}}\n64: \\newcommand{\\huygens}{\\textit{Huygens}}\n65: \\newcommand{\\dragonfly}{\\textit{Dragonfly}}\n66: \\newcommand{\\featurevec}{\\mathbf{f}}\n67: \\newcommand{\\gya}{\\,\\text{Gya}}\n68: \\newcommand{\\myr}{\\,\\text{Myr}}\n69: \\DeclareMathOperator{\\Beta}{Beta}\n70: \n71: \\input{version}\n72: \n73: \\begin{document}\n74: \\onehalfspacing\n75: \n76: %% ----- Title page -------------------------------------------------------\n77: \\begin{titlepage}\n78: \\centering\n79: \\includegraphics[width=7cm]{CollegeShields/Official-logo_IoA-University.png}\n80: \n81: \\vspace*{1.8cm}\n82: {\\LARGE\\bfseries Bayesian Surface Habitability Mapping of Titan}\\\\[0.7em]\n83: {\\large\\itshape from the Late Heavy Bombardment to the Solar Red-Giant Phase}\n84: \\vspace{1.5cm}\n85: \n86: {\\normalsize A report submitted for the degree of}\\\\[0.4em]\n87: {\\large\\bfseries Master of Philosophy}\\\\[0.2em]\n88: {\\large Planetary Science and Life in the Universe}\n89: \\vspace{1.0cm}\n90: \n91: {\\large\\itshape Chris Meadows, Darwin College}\\\\[0.4em]\n92: {\\normalsize \\texttt{cm10004@cam.ac.uk}}\\\\[0.2em]\n93: \\vspace*{1cm}\n94: \\centering\n95: \\includegraphics[width=3cm]{CollegeShields/Darwin.png}\n96: \\vspace*{1cm}\n97: \n98: \n99: {\\large Easter Term 2026}\n100: \\vfill\n101: \\rule{0.5\\textwidth}{0.4pt}\\\\[0.4em]\n102: {\\footnotesize All code, processed data products, and static habitability\n103: maps are openly archived at\n104: \\url{https://github.com/chrimblechrumble/pslu-p3}.}\\\\[0.3em]\n105: {\\footnotesize \\thesisversion{} --- \\thesisdate}\n106: \\end{titlepage}\n107: \n108: %% ----- Abstract ---------------------------------------------------------\n109: % \\chapter*{Abstract}\n110: % \\addcontentsline{toc}{chapter}{Abstract}\n111: \n112: % Saturn's moon \\titan{} is unique amongst solar system bodies in simultaneously\n113: % possessing a dense nitrogen-dominated atmosphere, a global methane--ethane\n114: % precipitation and lake cycle that is structurally analogous to the terrestrial\n115: % hydrological cycle, the largest inventory of complex organic chemistry in the\n116: % solar system outside Earth, confirmed polar hydrocarbon seas containing an\n117: % estimated $\\sim$70{,}000\\,km$^3$ of liquid methane--ethane--nitrogen, and a\n118: % deep interior water--ammonia ocean inferred from tidal deformation\n119: % measurements. This convergence of chemical feedstock, cycling solvent, and\n120: % liquid environments makes \\titan{} not merely a potentially habitable world\n121: % but a natural laboratory for prebiotic chemistry at planetary scale.\n122: \n123: % This thesis presents a quantitative, spatially-resolved probabilistic\n124: % framework for assessing \\titan{}'s surface and near-surface habitability at\n125: % five temporal configurations spanning the Late Heavy Bombardment\n126: % ($-3.5\\gya$), a lake-formation transition epoch ($-1.0\\gya$), the\n127: % present-day \\cassini{} epoch, a near-future solar warming window ($+0.25\\gya$),\n128: % and the red-giant future ($+5.9\\gya$). Eight observational\n129: % habitability-proxy features are derived from the complete \\cassini{} dataset\n130: % --- synthetic aperture radar (SAR), near-infrared spectroscopy (VIMS),\n131: % thermal mapping (CIRS), radar altimetry, and the Lopes et al.\\ (2019) global\n132: % geomorphological map --- and combined through a Bayesian Beta-conjugate\n133: % posterior update to yield probability maps $P(\\text{habitable}\\mid\\featurevec)$\n134: % at \\SI{4490}{\\metre\\per\\text{px}} resolution across the full globe.\n135: \n136: % At the present epoch, habitability is highest along the margins of the north\n137: % polar hydrocarbon seas, where posterior means reach $P(H)\\approx0.55$--0.57.\n138: % During the Late Heavy Bombardment, impact-melt ponds at major crater sites\n139: % constituted the dominant habitability zones. In the far future, solar\n140: % red-giant expansion will produce a near-globally habitable water--ammonia\n141: % ocean over an extraordinary accumulated organic substrate.\n142: \n143: % The analysis independently validates the NASA \\dragonfly{} mission's selection\n144: % of Selk crater: although its present-day solvent habitability is modest\n145: % (the $\\sim$6th percentile of present-epoch and $\\sim$40th percentile of\n146: % past-epoch habitability), its geomorphological diversity is the highest of any\n147: % equatorial site ($6.8\\times$ the global median) --- the Cassini proxy for the\n148: % past water--organic chemistry that \\dragonfly{} targets. The instrument suite\n149: % is shown to be well-matched to the dominant habitability drivers at the target site.\n150: \n151: %% ----- Abstract ---------------------------------------------------------\n152: \\input{abstract}\n153: \n154: %% ----- Chapters ---------------------------------------------------------\n155: \\input{introduction}\n156: \\input{methods}\n157: \\input{results}\n158: \\input{discussion}\n159: \n160: \n161: \n162: %% ----- Bibliography -----------------------------------------------------\n163: \\addcontentsline{toc}{chapter}{References}\n164: \\bibliographystyle{apalike-doi}\n165: \\bibliography{references}\n166: \n167: \n168: %% ----- Acknowledgements -------------------------------------------------\n169: % \\chapter*{Acknowledgements}\n170: % \\addcontentsline{toc}{chapter}{Acknowledgements}\n171: \n172: % The author gratefully acknowledges the NASA/ESA \\cassini{}--\\huygens{}\n173: % mission team, whose thirteen years of sustained observation produced the\n174: % extraordinary dataset underpinning every quantitative result presented here.\n175: % The Lopes et al.\\ (2019) global geomorphological shapefiles were made\n176: % available by Dr Rosaly Lopes and colleagues at the Jet Propulsion Laboratory.\n177: % The Corlies et al.\\ (2017) globally interpolated topographic model and the\n178: % Miller et al.\\ (2021) global fluvial channel map were obtained through the\n179: % Hayes Research Group at Cornell University. The Seignovert et al.\\ (2019)\n180: % VIMS+ISS global mosaic is archived at CaltechDATA.\n181: \n182: \n183: %% ----- Appendices -------------------------------------------------------\n184: \\appendix\n185: \n186: \\input{appendix_constants}\n187: \\input{appendix_priors}\n188: \\input{appendix_bayes_pedagogy}\n189: \\input{appendix_geo_scores}\n190: \\input{appendix_assumptions}\n191: \\input{appendix_notation}\n192: \\input{appendix_features}\n193: \\input{appendix_missions}\n194: \\input{appendix_dragonfly}\n195: \\input{appendix_lit_review}\n196: \n197: \\end{document}\n198: \n```\n\nCompile log (tail):\n```\nst/font\ns/type1/public/cm-super/sfbx1200.pfb>\nOutput written on main.pdf (73 pages, 14914064 bytes).\nPDF statistics:\n 776 PDF objects out of 1000 (max. 8388607)\n 575 compressed objects within 6 object streams\n 222 named destinations out of 1000 (max. 500000)\n 81 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\caption{\\textit{Near Future} ($+0.25$--$+1.2$\\,\\gya$) top-10: effectively identical to \\textit{Present} across the entire stable plateau.\n=======\n\\caption{\\textit{Near Future} ($+0.25$--$+1.2\\,\\gya$) top-10: effectively identical to \\textit{Present} across the entire stable plateau.\n>>>>>>> REPLACE\n", "id": "github_chrimblechrumble__pslu-p3__cfe61b6", "doc": "github_multi/chrimblechrumble__pslu-p3__cfe61b6", "mutation": "real", "source": "github", "repo": "chrimblechrumble/pslu-p3", "sha": "cfe61b65d93818492d32ae34ac1f21856b9fd238", "parent_sha": "9da01f59ef3ac0e15a7dfdde2d47d13ed775aee8", "license": "GPL-3.0", "url": "https://github.com/chrimblechrumble/pslu-p3/commit/cfe61b65d93818492d32ae34ac1f21856b9fd238", "changed_files": ["results.tex"], "original_root": "main.tex", "n_files": 18, "engine": "pdflatex", "error_category": "Missing $ inserted.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 359: Missing $ inserted.\n\nProject files:\n- CollegeShields/Darwin.png\n- CollegeShields/Official-logo_IoA-University.png\n- abstract.tex\n- apalike-doi.bst\n- appendix_assumptions.tex\n- appendix_bayes_pedagogy.tex\n- appendix_constants.tex\n- appendix_dragonfly.tex\n- appendix_features.tex\n- appendix_geo_scores.tex\n- appendix_lit_review.tex\n- appendix_missions.tex\n- appendix_notation.tex\n- appendix_priors.tex\n- discussion.tex\n- images/beta_update_figure.png\n- images/epoch_feature_timeline.png\n- images/feature_panel_present.png\n- images/fig_bayesian_update.png\n- images/fig_hdi_comparison.png\n- images/future_epoch_bathymetry.png\n- images/location_feature_spider.png\n- images/pipeline_flowchart.png\n- images/sensitivity_analysis.png\n- images/solar_system_comparison.png\n- images/temporal_habitability_trend.png\n- images/thesis_frame_002.png\n- images/thesis_frame_017.png\n- images/thesis_frame_029.png\n- images/thesis_frame_036.png\n- images/thesis_frame_068.png\n- introduction.tex\n- main.tex\n- methods.tex\n- references.bib\n- results.tex\n- version.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %% ============================================================\n2: %% main.tex — Titan Habitability MPhil Thesis\n3: %% Compile: pdflatex main && bibtex main && pdflatex main && pdflatex main\n4: %% ============================================================\n5: \\documentclass[11pt,a4paper,twoside]{report}\n6: \\raggedbottom\n7: \n8: \\usepackage[utf8]{inputenc}\n9: \\usepackage[T1]{fontenc}\n10: % lmodern fonts not in this TeX installation; using CM\n11: \\usepackage[margin=2.5cm,inner=3.2cm]{geometry}\n12: \\usepackage{setspace}\n13: \\usepackage{etoolbox}\n14: \\BeforeBeginEnvironment{tabular}{\\singlespacing} % single space for tables \n15: % microtype disabled (requires scalable fonts)\n16: % \\usepackage{microtype}\n17: \\usepackage{emptypage}\n18: \\usepackage{amsmath,amssymb,mathtools}\n19: \\usepackage[version=4]{mhchem}\n20: \\usepackage{textcomp} % provides \\textdegree; do NOT redefine \\degree\n21: \\usepackage{bm}\n22: \\usepackage{graphicx}\n23: \\usepackage{float}\n24: \\usepackage[labelfont=bf,font=small]{caption}\n25: \\usepackage{booktabs}\n26: \\usepackage{longtable}\n27: \\usepackage{multirow}\n28: \\usepackage{array}\n29: \\usepackage{tabularx}\n30: \\usepackage{makecell}\n31: \\usepackage[dvipsnames]{xcolor}\n32: \\usepackage[\n33: colorlinks=true,\n34: linkcolor=MidnightBlue,\n35: citecolor=ForestGreen,\n36: urlcolor=Maroon,\n37: pdfauthor={Chris Meadows},\n38: pdftitle={Bayesian Surface Habitability Mapping of Titan},\n39: ]{hyperref}\n40: \\usepackage{doi} % renders doi fields as clickable hyperlinks\n41: \\usepackage{cleveref}\n42: \\usepackage[round,authoryear,sort&compress]{natbib}\n43: \\usepackage{fancyhdr}\n44: \\usepackage{enumitem}\n45: \\usepackage{siunitx}\n46: \\sisetup{separate-uncertainty=true,per-mode=symbol}\n47: \n48: % Reduce the excessive vertical space before chapter titles\n49: \\usepackage{titlesec}\n50: \\titleformat{\\chapter}[hang]\n51: {\\normalfont\\LARGE\\bfseries}{\\thechapter}{1em}{}\n52: \\titlespacing*{\\chapter}{0pt}{20pt}{16pt}\n53: \n54: \\pagestyle{fancy}\n55: \\fancyhf{}\n56: \\fancyhead[LE]{\\small\\itshape\\leftmark}\n57: \\fancyhead[RO]{\\small\\itshape\\rightmark}\n58: \\fancyfoot[C]{\\thepage}\n59: \\renewcommand{\\headrulewidth}{0.4pt}\n60: \n61: % Custom commands\n62: \\newcommand{\\titan}{Titan}\n63: \\newcommand{\\cassini}{\\textit{Cassini}}\n64: \\newcommand{\\huygens}{\\textit{Huygens}}\n65: \\newcommand{\\dragonfly}{\\textit{Dragonfly}}\n66: \\newcommand{\\featurevec}{\\mathbf{f}}\n67: \\newcommand{\\gya}{\\,\\text{Gya}}\n68: \\newcommand{\\myr}{\\,\\text{Myr}}\n69: \\DeclareMathOperator{\\Beta}{Beta}\n70: \n71: \\input{version}\n72: \n73: \\begin{document}\n74: \\onehalfspacing\n75: \n76: %% ----- Title page -------------------------------------------------------\n77: \\begin{titlepage}\n78: \\centering\n79: \\includegraphics[width=7cm]{CollegeShields/Official-logo_IoA-University.png}\n80: \n81: \\vspace*{1.8cm}\n82: {\\LARGE\\bfseries Bayesian Surface Habitability Mapping of Titan}\\\\[0.7em]\n83: {\\large\\itshape from the Late Heavy Bombardment to the Solar Red-Giant Phase}\n84: \\vspace{1.5cm}\n85: \n86: {\\normalsize A report submitted for the degree of}\\\\[0.4em]\n87: {\\large\\bfseries Master of Philosophy}\\\\[0.2em]\n88: {\\large Planetary Science and Life in the Universe}\n89: \\vspace{1.0cm}\n90: \n91: {\\large\\itshape Chris Meadows, Darwin College}\\\\[0.4em]\n92: {\\normalsize \\texttt{cm10004@cam.ac.uk}}\\\\[0.2em]\n93: \\vspace*{1cm}\n94: \\centering\n95: \\includegraphics[width=3cm]{CollegeShields/Darwin.png}\n96: \\vspace*{1cm}\n97: \n98: \n99: {\\large Easter Term 2026}\n100: \\vfill\n101: \\rule{0.5\\textwidth}{0.4pt}\\\\[0.4em]\n102: {\\footnotesize All code, processed data products, and static habitability\n103: maps are openly archived at\n104: \\url{https://github.com/chrimblechrumble/pslu-p3}.}\\\\[0.3em]\n105: {\\footnotesize \\thesisversion{} --- \\thesisdate}\n106: \\end{titlepage}\n107: \n108: %% ----- Abstract ---------------------------------------------------------\n109: % \\chapter*{Abstract}\n110: % \\addcontentsline{toc}{chapter}{Abstract}\n111: \n112: % Saturn's moon \\titan{} is unique amongst solar system bodies in simultaneously\n113: % possessing a dense nitrogen-dominated atmosphere, a global methane--ethane\n114: % precipitation and lake cycle that is structurally analogous to the terrestrial\n115: % hydrological cycle, the largest inventory of complex organic chemistry in the\n116: % solar system outside Earth, confirmed polar hydrocarbon seas containing an\n117: % estimated $\\sim$70{,}000\\,km$^3$ of liquid methane--ethane--nitrogen, and a\n118: % deep interior water--ammonia ocean inferred from tidal deformation\n119: % measurements. This convergence of chemical feedstock, cycling solvent, and\n120: % liquid environments makes \\titan{} not merely a potentially habitable world\n121: % but a natural laboratory for prebiotic chemistry at planetary scale.\n122: \n123: % This thesis presents a quantitative, spatially-resolved probabilistic\n124: % framework for assessing \\titan{}'s surface and near-surface habitability at\n125: % five temporal configurations spanning the Late Heavy Bombardment\n126: % ($-3.5\\gya$), a lake-formation transition epoch ($-1.0\\gya$), the\n127: % present-day \\cassini{} epoch, a near-future solar warming window ($+0.25\\gya$),\n128: % and the red-giant future ($+5.9\\gya$). Eight observational\n129: % habitability-proxy features are derived from the complete \\cassini{} dataset\n130: % --- synthetic aperture radar (SAR), near-infrared spectroscopy (VIMS),\n131: % thermal mapping (CIRS), radar altimetry, and the Lopes et al.\\ (2019) global\n132: % geomorphological map --- and combined through a Bayesian Beta-conjugate\n133: % posterior update to yield probability maps $P(\\text{habitable}\\mid\\featurevec)$\n134: % at \\SI{4490}{\\metre\\per\\text{px}} resolution across the full globe.\n135: \n136: % At the present epoch, habitability is highest along the margins of the north\n137: % polar hydrocarbon seas, where posterior means reach $P(H)\\approx0.55$--0.57.\n138: % During the Late Heavy Bombardment, impact-melt ponds at major crater sites\n139: % constituted the dominant habitability zones. In the far future, solar\n140: % red-giant expansion will produce a near-globally habitable water--ammonia\n141: % ocean over an extraordinary accumulated organic substrate.\n142: \n143: % The analysis independently validates the NASA \\dragonfly{} mission's selection\n144: % of Selk crater: although its present-day solvent habitability is modest\n145: % (the $\\sim$6th percentile of present-epoch and $\\sim$40th percentile of\n146: % past-epoch habitability), its geomorphological diversity is the highest of any\n147: % equatorial site ($6.8\\times$ the global median) --- the Cassini proxy for the\n148: % past water--organic chemistry that \\dragonfly{} targets. The instrument suite\n149: % is shown to be well-matched to the dominant habitability drivers at the target site.\n150: \n151: %% ----- Abstract ---------------------------------------------------------\n152: \\input{abstract}\n153: \n154: %% ----- Chapters ---------------------------------------------------------\n155: \\input{introduction}\n156: \\input{methods}\n157: \\input{results}\n158: \\input{discussion}\n159: \n160: \n161: \n162: %% ----- Bibliography -----------------------------------------------------\n163: \\addcontentsline{toc}{chapter}{References}\n164: \\bibliographystyle{apalike-doi}\n165: \\bibliography{references}\n166: \n167: \n168: %% ----- Acknowledgements -------------------------------------------------\n169: % \\chapter*{Acknowledgements}\n170: % \\addcontentsline{toc}{chapter}{Acknowledgements}\n171: \n172: % The author gratefully acknowledges the NASA/ESA \\cassini{}--\\huygens{}\n173: % mission team, whose thirteen years of sustained observation produced the\n174: % extraordinary dataset underpinning every quantitative result presented here.\n175: % The Lopes et al.\\ (2019) global geomorphological shapefiles were made\n176: % available by Dr Rosaly Lopes and colleagues at the Jet Propulsion Laboratory.\n177: % The Corlies et al.\\ (2017) globally interpolated topographic model and the\n178: % Miller et al.\\ (2021) global fluvial channel map were obtained through the\n179: % Hayes Research Group at Cornell University. The Seignovert et al.\\ (2019)\n180: % VIMS+ISS global mosaic is archived at CaltechDATA.\n181: \n182: \n183: %% ----- Appendices -------------------------------------------------------\n184: \\appendix\n185: \n186: \\input{appendix_constants}\n187: \\input{appendix_priors}\n188: \\input{appendix_bayes_pedagogy}\n189: \\input{appendix_geo_scores}\n190: \\input{appendix_assumptions}\n191: \\input{appendix_notation}\n192: \\input{appendix_features}\n193: \\input{appendix_missions}\n194: \\input{appendix_dragonfly}\n195: \\input{appendix_lit_review}\n196: \n197: \\end{document}\n198: \n```\n\nCompile log (tail):\n```\nst/font\ns/type1/public/cm-super/sfbx1200.pfb>\nOutput written on main.pdf (73 pages, 14914064 bytes).\nPDF statistics:\n 776 PDF objects out of 1000 (max. 8388607)\n 575 compressed objects within 6 object streams\n 222 named destinations out of 1000 (max. 500000)\n 81 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/chrimblechrumble/pslu-p3"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "% Adjust the page margins\n\\setlength{\\hintscolumnwidth}{2.5cm}\n\n%----------------------------------------------------------------------------------------", "replace": "% Adjust the page margins\n\\setlength{\\hintscolumnwidth}{2.5cm}\n\\setlength{\\makecvheadnamewidth}{10cm}\n\n%----------------------------------------------------------------------------------------", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 37, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 38, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}], "log_tail": "rol sequences out of 15000+600000\n 583950 words of font info for 104 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 129i,11n,129p,1001b,470s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 235514 bytes).\nPDF statistics:\n 111 PDF objects out of 1000 (max. 8388607)\n 80 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 32269 words of extra memory for PDF output out of 35830 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 37: Undefined control sequence.\n- line 38: Missing number, treated as zero.\n\nProject files:\n- main.tex\n- sections/education.tex\n- sections/experience.tex\n- sections/projects.tex\n- sections/skills.tex\n\nOther project files (edit them with ):\n\n`sections/skills.tex` (full file, line-numbered):\n```\n1: %----------------------------------------------------------------------------------------\n2: %\tTECHNICAL SKILLS SECTION\n3: %----------------------------------------------------------------------------------------\n4: \n5: \\section{Technical Skills}\n6: \n7: \\subsection{Programming Languages}\n8: \\cvitem{}{C++ (C++ 17/20 standards), Python 2.7/3.7, C\\# (Unity)}\n9: \n10: \\subsection{Scripting Languages}\n11: \\cvitem{}{Windows CLI, Shell, Powershell}\n12: \n13: \\subsection{Technical Expertise}\n14: \\cvitem{Version Control}{Perforce, Git}\n15: \\cvitem{CI/CD}{Jenkins}\n16: \\cvitem{Containerization}{Docker}\n17: \\cvitem{Game Engines}{Unreal Engine}\n18: \\cvitem{Operating Systems}{Headless Linux GNU, Windows}\n19: \\cvitem{Cloud Platforms}{AWS, Google Cloud}\n```\n\n`sections/experience.tex` (full file, line-numbered):\n```\n1: %----------------------------------------------------------------------------------------\n2: %\tWORK EXPERIENCE SECTION\n3: %----------------------------------------------------------------------------------------\n4: \n5: \\section{Work Experience}\n6: \n7: \\cventry{2025 -- Current}{Simulation Engineer}{Greenroom Robotics}{}{}{\n8: \\begin{itemize}\n9: \\item Developing a Digital Twin simulation for Autonomous Marine Vessels in Unreal Engine 5\n10: \\item Implementing advanced simulation algorithms for maritime autonomous systems\n11: \\end{itemize}}\n12: \n13: \\cventry{2020 -- 2025}{Software Developer}{Vantari VR}{}{}{\n14: \\begin{itemize}\n15: \\item Was a founding developer for a VR Simulation training product educating clinicians\n16: \\item Developed and was delivery lead on multiple medical procedures utilising latest VR technologies in Unreal Engine\n17: \\item Was the lead Dev Ops and developed and maintained an end to end dev ops pipeline utilising Jenkins, Bitbucket Pipelines and various Docker pipelines\n18: \\item Led technical implementations for VR medical training simulations\n19: \\end{itemize}}\n20: \n21: \\cventry{2019 -- 2020}{Programming Instructor}{Academy of Interactive Entertainment}{}{}{\n22: \\begin{itemize}\n23: \\item Develop and deliver content for the Advanced Diploma of Professional Game Development (10702NAT)\n24: \\item Mentored students in advanced programming concepts and game development practices\n25: \\item Created comprehensive curriculum for professional game development training\n26: \\end{itemize}}\n27: \n28: \\cventry{2015 -- 2019}{Software Developer}{Rotor Studios}{}{}{\n29: \\begin{itemize}\n30: \\item Unreal Engine C++ Developer\n31: \\item Product and Technical Lead\n32: \\item Dev Ops (CI/CD)\n33: \\item Led development of high-profile VR and interactive experiences\n34: \\end{itemize}}\n35: \n36: \\cventry{Various}{IT Roles}{General Pants Group, Acer, Schenker Logistics}{}{}{\n37: \\begin{itemize}\n38: \\item Diverse IT experience across retail, hardware, and logistics sectors\n39: \\item Gained foundational technical and business process knowledge\n40: \\end{itemize}}\n```\n\n`sections/projects.tex` (full file, line-numbered):\n```\n1: %----------------------------------------------------------------------------------------\n2: %\tSHIPPED PRODUCTS SECTION\n3: %----------------------------------------------------------------------------------------\n4: \n5: \\section{Shipped Products}\n6: \n7: \\cventry{June 2020 -- July 2025}{Vantari Virtual Patient}{Software Engineer, Delivery Lead, Dev Ops}{\\href{https://www.vantarivr.com.au/}{www.vantarivr.com.au}}{}{\n8: \\begin{itemize}\n9: \\item Led development of comprehensive VR medical training platform\n10: \\item Implemented scalable architecture for multi-user VR experiences\n11: \\item Managed end-to-end DevOps pipeline for continuous deployment\n12: \\item Delivered high-quality VR training modules for healthcare professionals\n13: \\end{itemize}}\n14: \n15: \\cventry{August 2015 -- June 2019}{Showroom 360 - Toyota Australia}{QA/Junior Developer → Software Developer → Product Delivery Lead}{\\href{https://www.youtube.com/watch?v=C5uvNmWT7QQ}{YouTube Demo}}{}{\n16: \\begin{itemize}\n17: \\item Progressed through multiple roles demonstrating technical growth and leadership capabilities\n18: \\item Developed interactive automotive showroom experience using Unreal Engine\n19: \\item Led product delivery and coordinated with stakeholders for successful deployment\n20: \\item Implemented quality assurance processes and technical standards\n21: \\end{itemize}}\n22: \n23: \\cventry{July 2016 -- September 2016}{Dreamworld VR Rollercoaster}{Dev-Ops and Platform Optimisation}{\\href{https://www.youtube.com/watch?v=Gz-CvZMjSz0}{YouTube Demo}}{}{\n24: \\begin{itemize}\n25: \\item Optimized VR experience for Galaxy Note 5 platform\n26: \\item Implemented performance optimizations for mobile VR deployment\n27: \\item Managed deployment pipeline for theme park installation\n28: \\item Delivered high-performance VR experience for consumer entertainment\n29: \\end{itemize}}\n```\n\n`sections/education.tex` (full file, line-numbered):\n```\n1: %----------------------------------------------------------------------------------------\n2: %\tEDUCATION SECTION\n3: %----------------------------------------------------------------------------------------\n4: \n5: \\section{Education}\n6: \n7: \\cventry{2015}{Bachelors in Games Development (Programming)}{SAE Qantm College}{}{GPA: 6.47}{\n8: \\begin{itemize}\n9: \\item Specialized in game programming and interactive media development\n10: \\item Strong academic performance with above-average GPA\n11: \\item Comprehensive foundation in software engineering principles and game development methodologies\n12: \\end{itemize}}\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: % Professional Software Engineer CV\n3: % LaTeX Template\n4: % Version 2.0 (2024)\n5: %\n6: % Based on Overleaf Professional Resume Template\n7: % Optimized for ATS and professional presentation\n8: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n9: \n10: %----------------------------------------------------------------------------------------\n11: %\tPACKAGES AND DOCUMENT CONFIGURATIONS\n12: %----------------------------------------------------------------------------------------\n13: \n14: \\documentclass[11pt,a4paper,sans]{moderncv}\n15: \n16: % ModernCV themes\n17: \\moderncvstyle{banking} % CV theme - options include: 'casual' (default), 'classic', 'oldstyle' and 'banking'\n18: \\moderncvcolor{blue} % CV color - options include: 'blue' (default), 'orange', 'green', 'red', 'purple', 'grey' and 'black'\n19: \n20: \\usepackage[utf8]{inputenc}\n21: \\usepackage[scale=0.85]{geometry} % Reduce document margins\n22: \\usepackage{import}\n23: \\usepackage{multicol}\n24: \\usepackage{enumitem}\n25: \\usepackage{amssymb}\n26: \n27: % Personal data\n28: \\name{J'Jay}{Yabsley}\n29: \\address{Caringbah South, 2229}{}{}\n30: \\phone[mobile]{0404 211 790}\n31: \\email{jay.yabsley@gmail.com}\n32: \\social[github]{jay-yabsley} % Optional - add your GitHub username\n33: \\social[linkedin]{jay-yabsley} % Optional - add your LinkedIn profile\n34: \n35: % Adjust the page margins\n36: \\setlength{\\hintscolumnwidth}{2.5cm}\n37: \\setlength{\\makecvheadnamewidth}{10cm}\n38: \n39: %----------------------------------------------------------------------------------------\n40: %\tDOCUMENT\n41: %----------------------------------------------------------------------------------------\n42: \n43: \\begin{document}\n44: \n45: %----------------------------------------------------------------------------------------\n46: %\tCURRICULUM VITAE\n47: %----------------------------------------------------------------------------------------\n48: \n49: \\makecvtitle % Print the CV title\n50: \n51: %----------------------------------------------------------------------------------------\n52: %\tPROFESSIONAL SUMMARY SECTION\n53: %----------------------------------------------------------------------------------------\n54: \n55: \\section{Professional Summary}\n56: \\cvitem{}{Software Engineer with over 9 years of experience in software development and API integration. Proficient in C++, Python, and C\\#, with a proven track record in leading technical implementations and delivering scalable solutions. Adept at collaborating with diverse teams to meet business and user needs.}\n57: \n58: %----------------------------------------------------------------------------------------\n59: %\tTECHNICAL SKILLS SECTION\n60: %----------------------------------------------------------------------------------------\n61: \n62: \\input{sections/skills}\n63: \n64: %----------------------------------------------------------------------------------------\n65: %\tWORK EXPERIENCE SECTION\n66: %----------------------------------------------------------------------------------------\n67: \n68: \\input{sections/experience}\n69: \n70: %----------------------------------------------------------------------------------------\n71: %\tPROJECTS SECTION\n72: %----------------------------------------------------------------------------------------\n73: \n74: \\input{sections/projects}\n75: \n76: %----------------------------------------------------------------------------------------\n77: %\tEDUCATION SECTION\n78: %----------------------------------------------------------------------------------------\n79: \n80: \\input{sections/education}\n81: \n82: %----------------------------------------------------------------------------------------\n83: %\tREFERENCES SECTION\n84: %----------------------------------------------------------------------------------------\n85: \n86: \\section{References}\n87: \\cvitem{}{Available upon request}\n88: \n89: %----------------------------------------------------------------------------------------\n90: \n91: \\end{document}\n```\n\nCompile log (tail):\n```\nrol sequences out of 15000+600000\n 583950 words of font info for 104 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 129i,11n,129p,1001b,470s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 235514 bytes).\nPDF statistics:\n 111 PDF objects out of 1000 (max. 8388607)\n 80 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 32269 words of extra memory for PDF output out of 35830 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n% Adjust the page margins\n\\setlength{\\hintscolumnwidth}{2.5cm}\n\\setlength{\\makecvheadnamewidth}{10cm}\n\n%----------------------------------------------------------------------------------------\n=======\n% Adjust the page margins\n\\setlength{\\hintscolumnwidth}{2.5cm}\n\n%----------------------------------------------------------------------------------------\n>>>>>>> REPLACE\n", "id": "github_jayyabsley__curriculum-vitae__1e8a98f", "doc": "github_multi/jayyabsley__curriculum-vitae__1e8a98f", "mutation": "real", "source": "github", "repo": "jayyabsley/curriculum-vitae", "sha": "1e8a98f55aa91ad989404b49977feb6a8c816a49", "parent_sha": "5c2eb59f0c0624430344a4071e7462bcbbaf53b1", "license": "MIT", "url": "https://github.com/jayyabsley/curriculum-vitae/commit/1e8a98f55aa91ad989404b49977feb6a8c816a49", "changed_files": ["cv.tex"], "original_root": "cv.tex", "n_files": 5, "engine": "pdflatex", "error_category": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 37: Undefined control sequence.\n- line 38: Missing number, treated as zero.\n\nProject files:\n- main.tex\n- sections/education.tex\n- sections/experience.tex\n- sections/projects.tex\n- sections/skills.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: % Professional Software Engineer CV\n3: % LaTeX Template\n4: % Version 2.0 (2024)\n5: %\n6: % Based on Overleaf Professional Resume Template\n7: % Optimized for ATS and professional presentation\n8: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n9: \n10: %----------------------------------------------------------------------------------------\n11: %\tPACKAGES AND DOCUMENT CONFIGURATIONS\n12: %----------------------------------------------------------------------------------------\n13: \n14: \\documentclass[11pt,a4paper,sans]{moderncv}\n15: \n16: % ModernCV themes\n17: \\moderncvstyle{banking} % CV theme - options include: 'casual' (default), 'classic', 'oldstyle' and 'banking'\n18: \\moderncvcolor{blue} % CV color - options include: 'blue' (default), 'orange', 'green', 'red', 'purple', 'grey' and 'black'\n19: \n20: \\usepackage[utf8]{inputenc}\n21: \\usepackage[scale=0.85]{geometry} % Reduce document margins\n22: \\usepackage{import}\n23: \\usepackage{multicol}\n24: \\usepackage{enumitem}\n25: \\usepackage{amssymb}\n26: \n27: % Personal data\n28: \\name{J'Jay}{Yabsley}\n29: \\address{Caringbah South, 2229}{}{}\n30: \\phone[mobile]{0404 211 790}\n31: \\email{jay.yabsley@gmail.com}\n32: \\social[github]{jay-yabsley} % Optional - add your GitHub username\n33: \\social[linkedin]{jay-yabsley} % Optional - add your LinkedIn profile\n34: \n35: % Adjust the page margins\n36: \\setlength{\\hintscolumnwidth}{2.5cm}\n37: \\setlength{\\makecvheadnamewidth}{10cm}\n38: \n39: %----------------------------------------------------------------------------------------\n40: %\tDOCUMENT\n41: %----------------------------------------------------------------------------------------\n42: \n43: \\begin{document}\n44: \n45: %----------------------------------------------------------------------------------------\n46: %\tCURRICULUM VITAE\n47: %----------------------------------------------------------------------------------------\n48: \n49: \\makecvtitle % Print the CV title\n50: \n51: %----------------------------------------------------------------------------------------\n52: %\tPROFESSIONAL SUMMARY SECTION\n53: %----------------------------------------------------------------------------------------\n54: \n55: \\section{Professional Summary}\n56: \\cvitem{}{Software Engineer with over 9 years of experience in software development and API integration. Proficient in C++, Python, and C\\#, with a proven track record in leading technical implementations and delivering scalable solutions. Adept at collaborating with diverse teams to meet business and user needs.}\n57: \n58: %----------------------------------------------------------------------------------------\n59: %\tTECHNICAL SKILLS SECTION\n60: %----------------------------------------------------------------------------------------\n61: \n62: \\input{sections/skills}\n63: \n64: %----------------------------------------------------------------------------------------\n65: %\tWORK EXPERIENCE SECTION\n66: %----------------------------------------------------------------------------------------\n67: \n68: \\input{sections/experience}\n69: \n70: %----------------------------------------------------------------------------------------\n71: %\tPROJECTS SECTION\n72: %----------------------------------------------------------------------------------------\n73: \n74: \\input{sections/projects}\n75: \n76: %----------------------------------------------------------------------------------------\n77: %\tEDUCATION SECTION\n78: %----------------------------------------------------------------------------------------\n79: \n80: \\input{sections/education}\n81: \n82: %----------------------------------------------------------------------------------------\n83: %\tREFERENCES SECTION\n84: %----------------------------------------------------------------------------------------\n85: \n86: \\section{References}\n87: \\cvitem{}{Available upon request}\n88: \n89: %----------------------------------------------------------------------------------------\n90: \n91: \\end{document}\n```\n\nCompile log (tail):\n```\nrol sequences out of 15000+600000\n 583950 words of font info for 104 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 129i,11n,129p,1001b,470s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 235514 bytes).\nPDF statistics:\n 111 PDF objects out of 1000 (max. 8388607)\n 80 compressed objects within 1 object stream\n 12 named destinations out of 1000 (max. 500000)\n 32269 words of extra memory for PDF output out of 35830 (max. 10000000)\n```", "repo_url": "https://github.com/jayyabsley/curriculum-vitae"} {"bib": false, "lane": "project", "file_edits": [{"file": "chapters/02a-geometry.tex", "search": "\\begin{definition}[Riemannian metric and gradient]\n\\label{def:geo-metric}\nA \\emph{Riemannian metric} $g$ assigns to each $p$ an inner product", "replace": "\\begin{definition}[Riemannian metric and gradient]\nA \\emph{Riemannian metric} $g$ assigns to each $p$ an inner product", "type": "real"}, {"file": "main.tex", "search": "\\usepackage{amsmath,amssymb,amsthm}\n\\usepackage{mathtools}\n\n% ---- Graphics, colour, diagrams --------------------------------------------", "replace": "\\usepackage{amsmath,amssymb,amsthm}\n\\usepackage{mathtools}\n\\usepackage{stmaryrd}\n\n% ---- Graphics, colour, diagrams --------------------------------------------", "type": "real"}, {"file": "main.tex", "search": "\\newcommand{\\stat}[1]{\\textsc{#1}}\n\\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n\\def\\refused{\\textcolor{refused}{\\stat{refused}}}", "replace": "\\newcommand{\\stat}[1]{{\\scshape #1}}\n\\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n\\newcommand{\\refused}{\\textcolor{refused}{\\stat{refused}}}", "type": "real"}, {"file": "main.tex", "search": "\\def\\rq#1#2{\\paragraph{RQ#1.}\\textit{#2}}", "replace": "\\newcommand{\\rq}[2]{\\paragraph{RQ#1.}\\textit{#2}}", "type": "real"}, {"file": "main.tex", "search": " {\\normalsize [Department / Doctoral School]\\\\ {[Institution]}\\par}", "replace": " {\\normalsize [Department / Doctoral School]\\\\ [Institution]\\par}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["chapters/02a-geometry.tex", "main.tex"], "single_shot_visible": false, "error_lines": [{"line": 130, "text": "LaTeX Error: Command \\refused already defined.", "file": "main.tex", "fileLabel": null}, {"line": 142, "text": "LaTeX Error: Command \\rq already defined.", "file": "main.tex", "fileLabel": null}, {"line": 173, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}, {"line": 100, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}, {"line": 114, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 115, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 120, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 154, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}, {"line": 166, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 174, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 180, "text": "LaTeX Error: Command \\scshape invalid in math mode.", "file": "main.tex", "fileLabel": null}, {"line": 127, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "pfb>\nOutput written on main.pdf (79 pages, 880367 bytes).\nPDF statistics:\n 882 PDF objects out of 1000 (max. 8388607)\n 715 compressed objects within 8 object streams\n 336 named destinations out of 1000 (max. 500000)\n 162317 words of extra memory for PDF output out of 184870 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 130: LaTeX Error: Command \\refused already defined.\n- line 142: LaTeX Error: Command \\rq already defined.\n- line 173: Missing number, treated as zero.\n- line 100: Missing \\endcsname inserted.\n- line 114: LaTeX Error: Command \\scshape invalid in math mode.\n- line 115: LaTeX Error: Command \\scshape invalid in math mode.\n- line 120: LaTeX Error: Command \\scshape invalid in math mode.\n- line 154: Missing \\endcsname inserted.\n- line 166: LaTeX Error: Command \\scshape invalid in math mode.\n- line 174: LaTeX Error: Command \\scshape invalid in math mode.\n- line 180: LaTeX Error: Command \\scshape invalid in math mode.\n- line 127: Missing \\endcsname inserted.\n\nProject files:\n- .gitignore\n- README.md\n- chapters/01-introduction.tex\n- chapters/02-background.tex\n- chapters/02a-algebra.tex\n- chapters/02a-analysis.tex\n- chapters/02a-geometry.tex\n- chapters/02a-math-foundations.tex\n- chapters/02a-measure.tex\n- chapters/02a-order-logic.tex\n- chapters/02a-synthesis.tex\n- chapters/02b-recent-advances.tex\n- chapters/03-conceptual-framework.tex\n- chapters/04-methodology.tex\n- chapters/05-artifact.tex\n- chapters/06-fusion.tex\n- chapters/07-all-language.tex\n- chapters/08-vision-2030.tex\n- chapters/09-discussion.tex\n- chapters/10-conclusion.tex\n- chapters/A-method-catalog.tex\n- chapters/B-law-table.tex\n- chapters/C-timeline.tex\n- main.tex\n- references.bib\n\nOther project files (edit them with ):\n\n`references.bib` (head and lines matching the log, line-numbered):\n```\n...\n7: \n...\n11: \n12: @online{vdaalst-cv,\n13: author = {van der Aalst, Wil M. P.},\n14: title = {Curriculum Vitae --- Wil van der Aalst},\n15: year = {2025},\n16: url = {https://www.vdaalst.com/about_me/about_me.html},\n17: urldate = {2026-06-21}\n18: }\n19: \n20: @online{celonis-godfather,\n21: author = {{RWTH Aachen Process and Data Science Group}},\n22: title = {Celonis Appoints ``Godfather of Process Mining'' Professor Wil van der Aalst as Chief Scientist},\n23: year = {2021},\n24: date = {2021-08-24},\n25: url = {https://www.pads.rwth-aachen.de/cms/PADS/Der-Lehrstuhl/Aktuelle-Meldungen/~qbuga/Celonis-Appoints-Godfather-of-Process-M/},\n26: urldate = {2026-06-21}\n27: }\n28: \n29: @inproceedings{pm-manifesto-2011,\n30: author = {van der Aalst, Wil M. P. and {IEEE Task Force on Process Mining}},\n31: title = {Process Mining Manifesto},\n32: booktitle = {Business Process Management Workshops (BPM 2011)},\n33: series = {Lecture Notes in Business Information Processing},\n34: volume = {99},\n35: pages = {169--194},\n36: year = {2012},\n37: publisher = {Springer},\n38: doi = {10.1007/978-3-642-28108-2_19}\n39: }\n```\n\n`chapters/01-introduction.tex` (head and lines matching the log, line-numbered):\n```\n1: \\chapter{Introduction}\n2: \\label{ch:introduction}\n3: \n4: \\epigraph{When water flashes to steam, it will always attempt to increase to\n5: roughly $1{,}700$ times its original volume.}{\\textit{The National Board of\n6: Boiler and Pressure Vessel Inspectors} \\citep{nationalboard-steam}}\n7: \n8: \\section{Background and Motivation}\n9: \\label{sec:motivation}\n10: \n11: For most of computing history, the only ``language'' a machine could be made to\n12: understand with any depth was source code, and even that understanding was\n13: trapped inside individual tools. An editor that knew how to complete a Python\n14: symbol knew nothing about Rust; a tool that could navigate Java could not hover\n15: over TypeScript. Each pair of an editor and a programming language demanded its\n16: own integration, so that supporting $M$ editors across $N$ languages implied, in\n17: the worst case, $M \\times N$ separate implementations of the same handful of\n18: ideas: completion, go-to-definition, diagnostics, hover.\n19: \n20: In 2016, Microsoft, Red Hat, and Codenvy published the \\emph{Language Server\n21: Protocol} (LSP), a JSON-RPC contract that let a single \\emph{language server}\n22: serve any number of editors \\citep{lsp-redhat-2016,lsp-official}. The protocol's\n23: own documentation states the design intent plainly: ``a single Language Server\n24: can be re-used in multiple development tools, which in turn can support multiple\n25: languages with minimal effort'' \\citep{lsp-official}. The combinatorial effect\n26: is the move from $M \\times N$ to $M + N$: $M$ editor adapters plus $N$ servers\n27: \\citep{lsp-mxn-fcc}. LSP did not make editors smarter; it \\emph{decoupled} the\n28: locus of language intelligence from the locus of display, and in doing so turned\n29: ``understanding a language'' into a reusable, networked service.\n30: \n```\n\n`chapters/02-background.tex` (head and lines matching the log, line-numbered):\n```\n1: \\chapter{Background and Related Work}\n2: \\label{ch:background}\n3: \n4: \\epigraph{There is no AI without PI.}{\\textit{Wil van der Aalst}, on\n5: object-centric process mining as the enabler of artificial intelligence\n6: \\citep{noai-nopi-2025}}\n7: \n8: This chapter establishes the four foundations on which the thesis rests: process\n9: mining and the paradigm founded by van der Aalst (\\cref{sec:bg-pm}); the Language\n10: Server Protocol (\\cref{sec:bg-lsp}); the Model Context Protocol\n11: (\\cref{sec:bg-mcp}); and the Agent-to-Agent protocol together with the wider\n12: agent-interoperability landscape (\\cref{sec:bg-a2a,sec:bg-landscape}).\n13: \\Cref{sec:bg-synthesis} draws them together into the observation that organises\n14: the rest of the thesis: each is the same decoupling, performed at a different\n15: layer.\n16: \n17: \\section{Process Mining and the van der Aalst Paradigm}\n18: \\label{sec:bg-pm}\n19: \n20: \\subsection{Origins and definition}\n21: \n22: Process mining sits between data mining and business process management. Its\n23: canonical statement, from the \\emph{Process Mining Manifesto} issued by the IEEE\n24: Task Force on Process Mining---a document drafted by more than seventy-five people\n25: across more than fifty organisations \\citep{tfpm-manifesto}---is that ``the basic\n26: idea of process mining is to discover, monitor and improve real processes\n27: (i.e., not assumed processes) by extracting knowledge from event logs readily\n28: available in today's (information) systems'' \\citep{pm-manifesto-2011}. The\n29: field's reference monograph is van der Aalst's \\emph{Process Mining: Data Science\n30: in Action} \\citep{vdaalst-book-2016}.\n```\n\n`chapters/02b-recent-advances.tex` (head and lines matching the log, line-numbered):\n```\n1: \\section{Recent Advances (December 2025 -- June 2026)}\n2: \\label{sec:recent}\n3: \n4: The thesis is written into a fast-moving literature. This section surveys\n5: seventy preprints from the six months preceding submission to show that the\n6: argument sits at a live confluence rather than on settled ground.\\footnote{The\n7: works surveyed here were located by a machine-assisted arXiv harvest restricted to\n8: the window 2025-12-01 to 2026-06-21; fifteen were additionally verified by hand\n9: against their arXiv abstract pages (identifier, title, authors, and v1 date), and\n10: the remainder by the harvest's per-item fetch. As living preprints whose contents\n11: and versions change, every entry should be re-verified before formal submission;\n12: the set carries bounded status \\candidate\\ rather than \\admitted.} The survey is\n13: organised by the five research currents the thesis joins.\n14: \n15: \\paragraph{Process mining is becoming agentic and object-centric.} The discipline\n16: of \\cref{sec:bg-pm} is, in real time, turning toward the agents and the\n17: object-centric data this thesis foregrounds. Van der Aalst's own group has\n18: released \\emph{PMAx}, ``an agentic framework for AI-driven process mining'' that\n19: turns natural-language business questions into mining artifacts\n20: \\citep{pmax26}, and a neuro-symbolic anomaly detector that injects \\emph{Declare}\n21: constraints into neural conformance \\citep{gaikwad26}---the very Declare-plus-OCEL\n22: combination the artifact of \\cref{ch:artifact} uses. Object-centric event data is\n23: receiving fresh ontological foundations for time and relations \\citep{hooshyar25}\n24: and comparative grounding against industrial multilevel mining \\citep{ronzoni25}.\n25: LLMs are entering predictive monitoring \\citep{padella26}, business-process\n26: modelling assessment \\citep{lauer26}, multi-agent work-in-progress prediction\n27: \\citep{bibalan25}, and clinical-pathway risk estimation \\citep{ardimento26}, while\n28: the field reflects on ``process analytics'' as a discipline \\citep{stierle25},\n29: explainable workflow verification \\citep{klimek25}, decentralised edge mining\n30: \\citep{reiter25}, and network-traffic mining \\citep{vitale25}. The thesis's\n```\n\n`chapters/02a-math-foundations.tex` (full file, line-numbered):\n```\n1: \\chapter{Mathematical Foundations, from First Principles}\n2: \\label{ch:math}\n3: \n4: \\epigraph{Mathematics is the art of giving the same name to different\n5: things.}{Henri Poincar\\'e}\n6: \n7: The arguments of this thesis---that three protocols compose into one substrate,\n8: that conformance is three-valued, that convergence is a phase transition, that a\n9: repository can be read as a curved space of trajectories---are stated informally\n10: in \\cref{ch:framework} and instantiated in \\cref{ch:artifact}. This chapter\n11: supplies their mathematics, and it does so \\emph{from first principles}: each\n12: construct is built from sets and axioms, with definitions, and with proofs of the\n13: propositions the later chapters invoke. The intent is that no subsequent claim\n14: rests on borrowed authority; where the thesis says ``composition'', ``lattice'',\n15: ``latent heat'', or ``curvature'', this chapter says exactly what is meant.\n16: \n17: We make no claim to new mathematics. The contribution is the \\emph{derivation of\n18: the thesis's own constructs} within standard mathematics, so that they are\n19: falsifiable rather than merely evocative. Five pillars are built, and a short\n20: synthesis (\\cref{sec:synthesis-functor}) draws them into a single functor; each\n21: terminates in a result used later:\n22: \n23: \\begin{description}[leftmargin=1.6em,style=nextline]\n24: \\item[Pillar I --- The algebra of composition (\\cref{sec:alg}).] From monoids\n25: through categories, functors, adjunctions, monoidal categories, and operads to\n26: the \\emph{Decoupling Theorem} (\\cref{thm:decoupling}), which is the algebraic\n27: engine behind the phase transition's mechanism (\\cref{prop:discontinuous}).\n28: \\item[Pillar II --- The order-theoretic logic of conformance.] From posets and\n29: lattices to Kleene's and Belnap's many-valued logics, formalising the\n30: \\code{ConformanceVector} (\\cref{lst:cv}) and \\cref{prin:three-valued}.\n31: \\item[Pillar III --- The analysis of phase transitions.] From limits and\n32: continuity to Landau's free-energy expansion and a from-scratch derivation of\n33: the Clausius--Clapeyron relation and the latent heat that anchors\n34: \\cref{sec:fw-latent}.\n35: \\item[Pillar IV --- The geometry of law-state.] From topological spaces through\n36: smooth manifolds, connections, and curvature to gradient flow, formalising the\n37: manifold metaphors of \\code{AGENTS.md} (repository as manifold, failsets as\n38: curvature, admissibility as $\\Phi_G = 0$).\n39: \\item[Pillar V --- Measure, probability, and information.] From $\\sigma$-algebras\n40: through entropy and Fisher information, making ``receipts are proof measure'' a\n41: literal measure, recasting non-collapse as a data-processing inequality, and\n42: identifying the manifold of Pillar~IV with a statistical manifold via the\n43: Fisher--Rao metric.\n44: \\end{description}\n45: \n46: A reader fluent in these areas may treat the chapter as fixing notation and skip\n47: to \\cref{ch:framework}; a reader who wants the thesis to stand on its own will\n48: find here the load it is asked to bear. Pillars are developed in the order above;\n49: forward references to later chapters are deliberate, marking where each piece of\n50: mathematics is spent.\n51: \n52: \\input{chapters/02a-algebra}\n53: \\input{chapters/02a-order-logic} % Pillar II\n54: \\input{chapters/02a-analysis} % Pillar III\n55: \\input{chapters/02a-geometry} % Pillar IV\n56: \\input{chapters/02a-measure} % Pillar V\n57: \\input{chapters/02a-synthesis} % Synthesis: the conformance functor\n58: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % ============================================================================\n2: % The Phase Transition of Language\n3: % A doctoral thesis (design-science monograph)\n4: %\n5: % Build: biber + pdflatex (x2). No TeX toolchain is assumed locally;\n6: % this source is Overleaf-ready. A Markdown reading copy is provided\n7: % alongside as thesis.md.\n8: %\n9: % Epistemic discipline (inherited from the artifact under study):\n10: % - claims are graded with bounded status, not declarations of success;\n11: % - forecasts are flagged as forecasts;\n12: % - the words of triumph are declined throughout.\n13: % ============================================================================\n14: \\documentclass[11pt,a4paper,oneside]{report}\n15: \n16: % ---- Encoding and fonts ----------------------------------------------------\n17: \\usepackage[utf8]{inputenc}\n18: \\usepackage[T1]{fontenc}\n19: \\usepackage{lmodern}\n20: \\usepackage{textcomp}\n21: \\usepackage{microtype}\n22: \n23: % ---- Page layout -----------------------------------------------------------\n24: \\usepackage[a4paper,margin=3cm,bindingoffset=0.6cm]{geometry}\n25: \\usepackage{setspace}\n26: \\onehalfspacing\n27: \\usepackage{emptypage}\n28: \\usepackage{fancyhdr}\n29: \\pagestyle{fancy}\n30: \\fancyhf{}\n31: \\fancyhead[L]{\\nouppercase{\\leftmark}}\n32: \\fancyhead[R]{\\thepage}\n33: \\renewcommand{\\headrulewidth}{0.4pt}\n34: \n35: % ---- Mathematics -----------------------------------------------------------\n36: \\usepackage{amsmath,amssymb,amsthm}\n37: \\usepackage{mathtools}\n38: \\usepackage{stmaryrd}\n39: \n40: % ---- Graphics, colour, diagrams --------------------------------------------\n41: \\usepackage{graphicx}\n42: \\usepackage{xcolor}\n43: \\definecolor{admitted}{RGB}{27,94,32}\n44: \\definecolor{refused}{RGB}{183,28,28}\n45: \\definecolor{unknown}{RGB}{120,120,120}\n46: \\definecolor{lawblue}{RGB}{13,71,161}\n47: \\definecolor{codebg}{RGB}{245,245,245}\n48: \\usepackage{tikz}\n49: \\usetikzlibrary{arrows.meta,positioning,shapes.geometric,calc,fit,backgrounds,decorations.pathreplacing}\n50: \\usepackage{tikz-cd}\n51: \n52: % ---- Tables ----------------------------------------------------------------\n53: \\usepackage{booktabs}\n54: \\usepackage{array}\n55: \\usepackage{longtable}\n56: \\usepackage{tabularx}\n57: \\newcolumntype{Y}{>{\\raggedright\\arraybackslash}X}\n58: \n59: % ---- Lists and quotations --------------------------------------------------\n60: \\usepackage{enumitem}\n61: \\usepackage{csquotes}\n62: \\usepackage{epigraph}\n63: \\setlength{\\epigraphwidth}{0.62\\textwidth}\n64: \n65: % ---- Code listings ---------------------------------------------------------\n66: \\usepackage{listings}\n67: \\lstdefinelanguage{Rust}{\n68: morekeywords={pub,struct,enum,trait,impl,fn,let,mut,self,Self,match,if,else,%\n69: for,in,while,loop,return,type,const,static,use,mod,where,async,await,dyn,%\n70: move,ref,as,crate,super,unsafe,true,false,Option,Result,Vec,Box,String,%\n71: HashMap,bool,u8,u32,u64,i32,f64,usize,Some,None,Ok,Err},\n72: sensitive=true,\n73: morecomment=[l]{//},\n74: morecomment=[s]{/*}{*/},\n75: morestring=[b]\",\n76: }\n77: \\lstset{\n78: basicstyle=\\ttfamily\\footnotesize,\n79: backgroundcolor=\\color{codebg},\n80: keywordstyle=\\color{lawblue}\\bfseries,\n81: commentstyle=\\color{unknown}\\itshape,\n82: stringstyle=\\color{admitted},\n83: numberstyle=\\tiny\\color{unknown},\n84: numbers=left,\n85: numbersep=8pt,\n86: frame=single,\n87: framesep=5pt,\n88: rulecolor=\\color{unknown!40},\n89: breaklines=true,\n90: showstringspaces=false,\n91: captionpos=b,\n92: xleftmargin=14pt,\n93: }\n94: \n95: % ---- Bibliography ----------------------------------------------------------\n96: \\usepackage[backend=biber,style=authoryear,sorting=nyt,natbib=true,%\n97: maxcitenames=2,mincitenames=1,maxbibnames=12,uniquelist=false,giveninits=true]{biblatex}\n98: \\addbibresource{references.bib}\n99: \n100: % ---- Hyperlinks and cross-references ---------------------------------------\n101: \\usepackage[hidelinks,breaklinks=true]{hyperref}\n102: \\hypersetup{\n103: pdftitle={The Phase Transition of Language},\n104: pdfsubject={The convergence of LSP, MCP, and A2A into a universal law-state runtime},\n105: pdfkeywords={process mining, conformance checking, LSP, MCP, A2A, agentic AI, OCEL},\n106: }\n107: \\usepackage[nameinlink,capitalise]{cleveref}\n108: \n109: % ---- Theorem-like environments ---------------------------------------------\n110: \\theoremstyle{plain}\n111: \\newtheorem{theorem}{Theorem}[chapter]\n112: \\newtheorem{lemma}[theorem]{Lemma}\n113: \\newtheorem{corollary}[theorem]{Corollary}\n114: \\newtheorem{proposition}{Proposition}[chapter]\n115: \\newtheorem{hypothesis}{Hypothesis}[chapter]\n116: \\theoremstyle{definition}\n117: \\newtheorem{definition}{Definition}[chapter]\n118: \\newtheorem{principle}{Principle}[chapter]\n119: \\newtheorem{axiom}{Axiom}[chapter]\n120: \\newtheorem{construction}{Construction}[chapter]\n121: \\newtheorem{example}{Example}[chapter]\n122: \\newtheorem{notation}{Notation}[chapter]\n123: \\theoremstyle{remark}\n124: \\newtheorem*{remark}{Remark}\n125: \n126: % ---- Custom semantics ------------------------------------------------------\n127: % Bounded-status rendering (the thesis grades its own claims this way).\n128: \\newcommand{\\stat}[1]{{\\scshape #1}}\n129: \\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n130: \\newcommand{\\refused}{\\textcolor{refused}{\\stat{refused}}}\n131: \\newcommand{\\unknownstat}{\\textcolor{unknown}{\\stat{unknown}}}\n132: \\newcommand{\\candidate}{\\stat{candidate}}\n133: \\newcommand{\\partialstat}{\\stat{partial}}\n134: \\newcommand{\\blocked}{\\stat{blocked}}\n135: \\newcommand{\\openstat}{\\stat{open}}\n136: \\newcommand{\\forecast}{\\textcolor{refused}{\\stat{forecast}}}\n137: % Artifact vocabulary\n138: \\newcommand{\\lspmax}{\\mbox{\\textsc{lsp-max}}}\n139: \\newcommand{\\maxm}[1]{\\texttt{max/#1}}\n140: \\newcommand{\\code}[1]{\\texttt{#1}}\n141: % Research-question environment\n142: \\newcommand{\\rq}[2]{\\paragraph{RQ#1.}\\textit{#2}}\n143: \n144: % A reusable \"claim card\" for graded findings.\n145: \\newcommand{\\finding}[2]{\\par\\noindent\\fbox{\\parbox{0.97\\linewidth}{%\n146: \\textbf{Finding #1} \\hfill #2}}\\par\\vspace{4pt}}\n147: \n148: \\title{The Phase Transition of Language}\n149: \\author{[Author Name]}\n150: \\date{June 2026}\n151: \n152: % ============================================================================\n153: \\begin{document}\n154: % ============================================================================\n155: \n156: \\pagenumbering{roman}\n157: \n158: % ---------------------------------------------------------------- Title page\n159: \\begin{titlepage}\n160: \\centering\n161: \\vspace*{1.2cm}\n162: {\\scshape\\large Doctoral Thesis\\par}\n163: \\vspace{1.0cm}\n164: {\\Huge\\bfseries The Phase Transition of Language\\par}\n165: \\vspace{0.9cm}\n166: {\\large\\itshape On the Convergence of the Language Server, Model Context,\\\\\n167: and Agent-to-Agent Protocols into a Universal Law-State Runtime\\par}\n168: \\vspace{0.4cm}\n169: {\\large A Process-Mining Vision for 2030\\par}\n170: \\vspace{1.6cm}\n171: {\\large [Author Name]\\par}\n172: \\vspace{0.4cm}\n173: {\\normalsize [Department / Doctoral School]\\\\ [Institution]\\par}\n174: \\vfill\n175: {\\normalsize Prepared for the consideration of\\par}\n176: \\vspace{0.2cm}\n177: {\\large Prof.\\ dr.\\ ir.\\ Wil M.\\ P.\\ van der Aalst\\par}\n178: \\vspace{1.2cm}\n179: {\\normalsize June 2026\\par}\n180: \\vspace{0.6cm}\n181: {\\footnotesize Workspace artifact under study: \\lspmax{} (CalVer 26.6.18).\\par}\n182: \\end{titlepage}\n183: \n184: % ---------------------------------------------------------------- Abstract\n185: \\chapter*{Abstract}\n186: \\addcontentsline{toc}{chapter}{Abstract}\n187: \\markboth{Abstract}{Abstract}\n188: \n189: The Language Server Protocol (LSP) decoupled editors from language intelligence,\n190: collapsing an $M \\times N$ integration burden into $M + N$ and turning code\n191: understanding into a reusable service \\citep{lsp-redhat-2016,lsp-official}.\n192: A decade later, two further protocols have repeated this move at higher layers:\n193: the Model Context Protocol (MCP), open-sourced by Anthropic in November~2024,\n194: standardised how models reach tools, data, and context \\citep{mcp-anthropic-2024};\n195: and the Agent-to-Agent protocol (A2A), published by Google in April~2025,\n196: standardised how autonomous agents discover and coordinate with one another\n197: \\citep{a2a-google-2025}. This thesis argues that the fusion of these three\n198: protocols---LSP for meaning, MCP for context, A2A for coordination---constitutes\n199: not an incremental integration but a \\emph{phase transition} in machine-mediated\n200: language, analogous to the roughly $1{,}600$--$1{,}700$-fold volume expansion when\n201: water becomes steam at its boiling point \\citep{phys-illinois-steam,nationalboard-steam}.\n202: The input that drives the transition is standardisation: a large, discontinuous\n203: investment---a latent heat---absorbed at apparent constant ``temperature'' that,\n204: once paid, expands the addressable surface of language by orders of magnitude.\n205: \n206: We develop the argument through the lens of process mining, the discipline\n207: founded by Wil van der Aalst, in which behaviour recorded as event logs is checked\n208: for conformance against a model of how it ought to unfold\n209: \\citep{pm-manifesto-2011,vdaalst-book-2016}. We contend that when LSP is\n210: generalised beyond source code to all forms of language---natural language,\n211: legal and regulatory text, mathematics, biological sequence, music, and business\n212: process---each such language acquires an event log and therefore a conformance\n213: surface. Echoing van der Aalst's recent dictum that there is ``no AI without PI''\n214: (process intelligence), in which object-centric process mining is ``the missing\n215: link connecting data and processes'' \\citep{noai-nopi-2025}, we argue that there\n216: is no trustworthy conformance for all language without an object-centric event\n217: abstraction \\citep{ocel2-2024}.\n218: \n219: We instantiate the argument in \\lspmax, a law-state runtime projected through LSP\n220: whose \\code{ConformanceVector} keeps \\admitted, \\refused, and \\unknownstat{} law\n221: axes strictly distinct, whose diagnostics are emitted as object-centric events\n222: (OCEL~2.0), and whose claims are graded only by bounded status \\citep{lspmax}.\n223: Using design-science methodology \\citep{hevner2004,peffers2007}, we present the\n224: artifact, a fusion architecture, and a 2030 roadmap. Throughout, we adopt the\n225: artifact's own epistemic discipline: we grade each claim as \\admitted, \\refused,\n226: or \\unknownstat; we mark every projection as a \\forecast; and we decline the\n227: language of triumph.\n228: \n229: \\vfill\n230: \\noindent\\textbf{Keywords:} process mining; conformance checking; object-centric\n231: event logs; Language Server Protocol; Model Context Protocol; Agent-to-Agent\n232: protocol; agentic AI; law-state runtime; protocol convergence.\n233: \n234: % ---------------------------------------------------------- Epistemic note\n235: \\chapter*{A Note on Method and Language}\n236: \\addcontentsline{toc}{chapter}{A Note on Method and Language}\n237: \\markboth{A Note on Method and Language}{A Note on Method and Language}\n238: \n239: This thesis studies an artifact, \\lspmax, whose constitution forbids\n240: \\emph{victory language}---unbounded declarations such as ``solved'' or\n241: ``guaranteed''---and instead requires every claim to carry a \\emph{bounded\n242: status} and, where admission is asserted, a \\emph{receipt}: a content-addressed\n243: record binding a digest, a boundary, and a negative-control result\n244: \\citep{lspmax}. It would be inconsistent to describe such an artifact in the\n245: register it refuses. We therefore adopt its discipline as our own. Findings are\n246: graded \\admitted{} (evidence present and checked), \\refused{} (evidence present,\n247: contrary), or \\unknownstat{} (admissibility not yet determinable); intermediate\n248: grades \\candidate, \\partialstat, and \\openstat{} are used where appropriate. The\n249: three states never collapse into one another: an \\unknownstat{} is never quietly\n250: promoted to \\admitted. Numerical predictions about 2030 are commercial or\n251: analyst forecasts, not measurements, and are marked \\forecast. Quotations from\n252: primary specifications are reproduced verbatim and cited to the revision in force\n253: at the time of writing; the reader is cautioned that living specifications\n254: (MCP, A2A, and LSP~3.18 among them) continue to evolve.\n255: \n256: % ---------------------------------------------------------------- Contents\n257: \\cleardoublepage\n258: \\tableofcontents\n259: \\listoffigures\n260: \\listoftables\n261: \n262: % ============================================================================\n263: \\cleardoublepage\n264: \\pagenumbering{arabic}\n265: \\setcounter{page}{1}\n266: % ============================================================================\n267: %\n268: % Chapters are maintained as separate files under chapters/ and included\n269: % below. Each \\input is uncommented as the chapter is written, so that the\n270: % document always compiles with whatever content currently exists.\n271: %\n272: \\input{chapters/01-introduction} % Ch 1: Introduction; thesis statement; RQs\n273: \\input{chapters/02-background} % Ch 2: Process mining; LSP; MCP; A2A\n274: \\input{chapters/02b-recent-advances} % (closing section of Ch 2: recent arXiv 2025-2026)\n275: \\input{chapters/02a-math-foundations} % Ch 3: Mathematical foundations (algebra/logic/analysis/geometry)\n276: \\input{chapters/03-conceptual-framework} % Ch 4: Language as process; phase transition\n277: \\input{chapters/04-methodology} % Ch 5: Design science; bounded-status epistemics\n278: \\input{chapters/05-artifact} % Ch 6: The lsp-max artifact\n279: \\input{chapters/06-fusion} % Ch 7: The LSP x MCP x A2A fusion architecture\n280: \\input{chapters/07-all-language} % Ch 8: Conformance checking for all language\n281: \\input{chapters/08-vision-2030} % Ch 9: The phase transition realised; roadmap\n282: \\input{chapters/09-discussion} % Ch 10: RQs revisited; threats to validity\n283: \\input{chapters/10-conclusion} % Ch 11: Contributions; future work\n284: % NOTE: chapter numbers follow \\input order, not file names.\n285: %\n286: % ============================================================================\n287: \n288: % ---------------------------------------------------------------- References\n289: \\cleardoublepage\n290: \\printbibliography[heading=bibintoc,title={References}]\n291: \n292: % ---------------------------------------------------------------- Appendices\n293: \\appendix\n294: \\input{chapters/A-method-catalog} % App A: the max/* method catalogue\n295: \\input{chapters/B-law-table} % App B: laws and bounded-status vocabulary\n296: \\input{chapters/C-timeline} % App C: protocol timeline 2016--2030\n297: \n298: \\end{document}\n299: \n```\n\nCompile log (tail):\n```\npfb>\nOutput written on main.pdf (79 pages, 880367 bytes).\nPDF statistics:\n 882 PDF objects out of 1000 (max. 8388607)\n 715 compressed objects within 8 object streams\n 336 named destinations out of 1000 (max. 500000)\n 162317 words of extra memory for PDF output out of 184870 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n {\\normalsize [Department / Doctoral School]\\\\ [Institution]\\par}\n=======\n {\\normalsize [Department / Doctoral School]\\\\ {[Institution]}\\par}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\newcommand{\\rq}[2]{\\paragraph{RQ#1.}\\textit{#2}}\n=======\n\\def\\rq#1#2{\\paragraph{RQ#1.}\\textit{#2}}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\newcommand{\\stat}[1]{{\\scshape #1}}\n\\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n\\newcommand{\\refused}{\\textcolor{refused}{\\stat{refused}}}\n=======\n\\newcommand{\\stat}[1]{\\textsc{#1}}\n\\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n\\def\\refused{\\textcolor{refused}{\\stat{refused}}}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage{amsmath,amssymb,amsthm}\n\\usepackage{mathtools}\n\\usepackage{stmaryrd}\n\n% ---- Graphics, colour, diagrams --------------------------------------------\n=======\n\\usepackage{amsmath,amssymb,amsthm}\n\\usepackage{mathtools}\n\n% ---- Graphics, colour, diagrams --------------------------------------------\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\begin{definition}[Riemannian metric and gradient]\nA \\emph{Riemannian metric} $g$ assigns to each $p$ an inner product\n=======\n\\begin{definition}[Riemannian metric and gradient]\n\\label{def:geo-metric}\nA \\emph{Riemannian metric} $g$ assigns to each $p$ an inner product\n>>>>>>> REPLACE\n", "id": "github_seanchatmangpt__lsp-max__df7df26", "doc": "github_multi/seanchatmangpt__lsp-max__df7df26", "mutation": "real", "source": "github", "repo": "seanchatmangpt/lsp-max", "sha": "df7df26493221e3a6a4dd5171f931d85348676d2", "parent_sha": "d579a302b2e4ccb0d5ef024b3b6ba3c0a7572ac5", "license": "Apache-2.0", "url": "https://github.com/seanchatmangpt/lsp-max/commit/df7df26493221e3a6a4dd5171f931d85348676d2", "changed_files": ["chapters/02a-geometry.tex", "thesis.tex"], "original_root": "thesis.tex", "n_files": 23, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS already defined.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 130: LaTeX Error: Command \\refused already defined.\n- line 142: LaTeX Error: Command \\rq already defined.\n- line 173: Missing number, treated as zero.\n- line 100: Missing \\endcsname inserted.\n- line 114: LaTeX Error: Command \\scshape invalid in math mode.\n- line 115: LaTeX Error: Command \\scshape invalid in math mode.\n- line 120: LaTeX Error: Command \\scshape invalid in math mode.\n- line 154: Missing \\endcsname inserted.\n- line 166: LaTeX Error: Command \\scshape invalid in math mode.\n- line 174: LaTeX Error: Command \\scshape invalid in math mode.\n- line 180: LaTeX Error: Command \\scshape invalid in math mode.\n- line 127: Missing \\endcsname inserted.\n\nProject files:\n- .gitignore\n- README.md\n- chapters/01-introduction.tex\n- chapters/02-background.tex\n- chapters/02a-algebra.tex\n- chapters/02a-analysis.tex\n- chapters/02a-geometry.tex\n- chapters/02a-math-foundations.tex\n- chapters/02a-measure.tex\n- chapters/02a-order-logic.tex\n- chapters/02a-synthesis.tex\n- chapters/02b-recent-advances.tex\n- chapters/03-conceptual-framework.tex\n- chapters/04-methodology.tex\n- chapters/05-artifact.tex\n- chapters/06-fusion.tex\n- chapters/07-all-language.tex\n- chapters/08-vision-2030.tex\n- chapters/09-discussion.tex\n- chapters/10-conclusion.tex\n- chapters/A-method-catalog.tex\n- chapters/B-law-table.tex\n- chapters/C-timeline.tex\n- main.tex\n- references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % ============================================================================\n2: % The Phase Transition of Language\n3: % A doctoral thesis (design-science monograph)\n4: %\n5: % Build: biber + pdflatex (x2). No TeX toolchain is assumed locally;\n6: % this source is Overleaf-ready. A Markdown reading copy is provided\n7: % alongside as thesis.md.\n8: %\n9: % Epistemic discipline (inherited from the artifact under study):\n10: % - claims are graded with bounded status, not declarations of success;\n11: % - forecasts are flagged as forecasts;\n12: % - the words of triumph are declined throughout.\n13: % ============================================================================\n14: \\documentclass[11pt,a4paper,oneside]{report}\n15: \n16: % ---- Encoding and fonts ----------------------------------------------------\n17: \\usepackage[utf8]{inputenc}\n18: \\usepackage[T1]{fontenc}\n19: \\usepackage{lmodern}\n20: \\usepackage{textcomp}\n21: \\usepackage{microtype}\n22: \n23: % ---- Page layout -----------------------------------------------------------\n24: \\usepackage[a4paper,margin=3cm,bindingoffset=0.6cm]{geometry}\n25: \\usepackage{setspace}\n26: \\onehalfspacing\n27: \\usepackage{emptypage}\n28: \\usepackage{fancyhdr}\n29: \\pagestyle{fancy}\n30: \\fancyhf{}\n31: \\fancyhead[L]{\\nouppercase{\\leftmark}}\n32: \\fancyhead[R]{\\thepage}\n33: \\renewcommand{\\headrulewidth}{0.4pt}\n34: \n35: % ---- Mathematics -----------------------------------------------------------\n36: \\usepackage{amsmath,amssymb,amsthm}\n37: \\usepackage{mathtools}\n38: \\usepackage{stmaryrd}\n39: \n40: % ---- Graphics, colour, diagrams --------------------------------------------\n41: \\usepackage{graphicx}\n42: \\usepackage{xcolor}\n43: \\definecolor{admitted}{RGB}{27,94,32}\n44: \\definecolor{refused}{RGB}{183,28,28}\n45: \\definecolor{unknown}{RGB}{120,120,120}\n46: \\definecolor{lawblue}{RGB}{13,71,161}\n47: \\definecolor{codebg}{RGB}{245,245,245}\n48: \\usepackage{tikz}\n49: \\usetikzlibrary{arrows.meta,positioning,shapes.geometric,calc,fit,backgrounds,decorations.pathreplacing}\n50: \\usepackage{tikz-cd}\n51: \n52: % ---- Tables ----------------------------------------------------------------\n53: \\usepackage{booktabs}\n54: \\usepackage{array}\n55: \\usepackage{longtable}\n56: \\usepackage{tabularx}\n57: \\newcolumntype{Y}{>{\\raggedright\\arraybackslash}X}\n58: \n59: % ---- Lists and quotations --------------------------------------------------\n60: \\usepackage{enumitem}\n61: \\usepackage{csquotes}\n62: \\usepackage{epigraph}\n63: \\setlength{\\epigraphwidth}{0.62\\textwidth}\n64: \n65: % ---- Code listings ---------------------------------------------------------\n66: \\usepackage{listings}\n67: \\lstdefinelanguage{Rust}{\n68: morekeywords={pub,struct,enum,trait,impl,fn,let,mut,self,Self,match,if,else,%\n69: for,in,while,loop,return,type,const,static,use,mod,where,async,await,dyn,%\n70: move,ref,as,crate,super,unsafe,true,false,Option,Result,Vec,Box,String,%\n71: HashMap,bool,u8,u32,u64,i32,f64,usize,Some,None,Ok,Err},\n72: sensitive=true,\n73: morecomment=[l]{//},\n74: morecomment=[s]{/*}{*/},\n75: morestring=[b]\",\n76: }\n77: \\lstset{\n78: basicstyle=\\ttfamily\\footnotesize,\n79: backgroundcolor=\\color{codebg},\n80: keywordstyle=\\color{lawblue}\\bfseries,\n81: commentstyle=\\color{unknown}\\itshape,\n82: stringstyle=\\color{admitted},\n83: numberstyle=\\tiny\\color{unknown},\n84: numbers=left,\n85: numbersep=8pt,\n86: frame=single,\n87: framesep=5pt,\n88: rulecolor=\\color{unknown!40},\n89: breaklines=true,\n90: showstringspaces=false,\n91: captionpos=b,\n92: xleftmargin=14pt,\n93: }\n94: \n95: % ---- Bibliography ----------------------------------------------------------\n96: \\usepackage[backend=biber,style=authoryear,sorting=nyt,natbib=true,%\n97: maxcitenames=2,mincitenames=1,maxbibnames=12,uniquelist=false,giveninits=true]{biblatex}\n98: \\addbibresource{references.bib}\n99: \n100: % ---- Hyperlinks and cross-references ---------------------------------------\n101: \\usepackage[hidelinks,breaklinks=true]{hyperref}\n102: \\hypersetup{\n103: pdftitle={The Phase Transition of Language},\n104: pdfsubject={The convergence of LSP, MCP, and A2A into a universal law-state runtime},\n105: pdfkeywords={process mining, conformance checking, LSP, MCP, A2A, agentic AI, OCEL},\n106: }\n107: \\usepackage[nameinlink,capitalise]{cleveref}\n108: \n109: % ---- Theorem-like environments ---------------------------------------------\n110: \\theoremstyle{plain}\n111: \\newtheorem{theorem}{Theorem}[chapter]\n112: \\newtheorem{lemma}[theorem]{Lemma}\n113: \\newtheorem{corollary}[theorem]{Corollary}\n114: \\newtheorem{proposition}{Proposition}[chapter]\n115: \\newtheorem{hypothesis}{Hypothesis}[chapter]\n116: \\theoremstyle{definition}\n117: \\newtheorem{definition}{Definition}[chapter]\n118: \\newtheorem{principle}{Principle}[chapter]\n119: \\newtheorem{axiom}{Axiom}[chapter]\n120: \\newtheorem{construction}{Construction}[chapter]\n121: \\newtheorem{example}{Example}[chapter]\n122: \\newtheorem{notation}{Notation}[chapter]\n123: \\theoremstyle{remark}\n124: \\newtheorem*{remark}{Remark}\n125: \n126: % ---- Custom semantics ------------------------------------------------------\n127: % Bounded-status rendering (the thesis grades its own claims this way).\n128: \\newcommand{\\stat}[1]{{\\scshape #1}}\n129: \\newcommand{\\admitted}{\\textcolor{admitted}{\\stat{admitted}}}\n130: \\newcommand{\\refused}{\\textcolor{refused}{\\stat{refused}}}\n131: \\newcommand{\\unknownstat}{\\textcolor{unknown}{\\stat{unknown}}}\n132: \\newcommand{\\candidate}{\\stat{candidate}}\n133: \\newcommand{\\partialstat}{\\stat{partial}}\n134: \\newcommand{\\blocked}{\\stat{blocked}}\n135: \\newcommand{\\openstat}{\\stat{open}}\n136: \\newcommand{\\forecast}{\\textcolor{refused}{\\stat{forecast}}}\n137: % Artifact vocabulary\n138: \\newcommand{\\lspmax}{\\mbox{\\textsc{lsp-max}}}\n139: \\newcommand{\\maxm}[1]{\\texttt{max/#1}}\n140: \\newcommand{\\code}[1]{\\texttt{#1}}\n141: % Research-question environment\n142: \\newcommand{\\rq}[2]{\\paragraph{RQ#1.}\\textit{#2}}\n143: \n144: % A reusable \"claim card\" for graded findings.\n145: \\newcommand{\\finding}[2]{\\par\\noindent\\fbox{\\parbox{0.97\\linewidth}{%\n146: \\textbf{Finding #1} \\hfill #2}}\\par\\vspace{4pt}}\n147: \n148: \\title{The Phase Transition of Language}\n149: \\author{[Author Name]}\n150: \\date{June 2026}\n151: \n152: % ============================================================================\n153: \\begin{document}\n154: % ============================================================================\n155: \n156: \\pagenumbering{roman}\n157: \n158: % ---------------------------------------------------------------- Title page\n159: \\begin{titlepage}\n160: \\centering\n161: \\vspace*{1.2cm}\n162: {\\scshape\\large Doctoral Thesis\\par}\n163: \\vspace{1.0cm}\n164: {\\Huge\\bfseries The Phase Transition of Language\\par}\n165: \\vspace{0.9cm}\n166: {\\large\\itshape On the Convergence of the Language Server, Model Context,\\\\\n167: and Agent-to-Agent Protocols into a Universal Law-State Runtime\\par}\n168: \\vspace{0.4cm}\n169: {\\large A Process-Mining Vision for 2030\\par}\n170: \\vspace{1.6cm}\n171: {\\large [Author Name]\\par}\n172: \\vspace{0.4cm}\n173: {\\normalsize [Department / Doctoral School]\\\\ [Institution]\\par}\n174: \\vfill\n175: {\\normalsize Prepared for the consideration of\\par}\n176: \\vspace{0.2cm}\n177: {\\large Prof.\\ dr.\\ ir.\\ Wil M.\\ P.\\ van der Aalst\\par}\n178: \\vspace{1.2cm}\n179: {\\normalsize June 2026\\par}\n180: \\vspace{0.6cm}\n181: {\\footnotesize Workspace artifact under study: \\lspmax{} (CalVer 26.6.18).\\par}\n182: \\end{titlepage}\n183: \n184: % ---------------------------------------------------------------- Abstract\n185: \\chapter*{Abstract}\n186: \\addcontentsline{toc}{chapter}{Abstract}\n187: \\markboth{Abstract}{Abstract}\n188: \n189: The Language Server Protocol (LSP) decoupled editors from language intelligence,\n190: collapsing an $M \\times N$ integration burden into $M + N$ and turning code\n191: understanding into a reusable service \\citep{lsp-redhat-2016,lsp-official}.\n192: A decade later, two further protocols have repeated this move at higher layers:\n193: the Model Context Protocol (MCP), open-sourced by Anthropic in November~2024,\n194: standardised how models reach tools, data, and context \\citep{mcp-anthropic-2024};\n195: and the Agent-to-Agent protocol (A2A), published by Google in April~2025,\n196: standardised how autonomous agents discover and coordinate with one another\n197: \\citep{a2a-google-2025}. This thesis argues that the fusion of these three\n198: protocols---LSP for meaning, MCP for context, A2A for coordination---constitutes\n199: not an incremental integration but a \\emph{phase transition} in machine-mediated\n200: language, analogous to the roughly $1{,}600$--$1{,}700$-fold volume expansion when\n201: water becomes steam at its boiling point \\citep{phys-illinois-steam,nationalboard-steam}.\n202: The input that drives the transition is standardisation: a large, discontinuous\n203: investment---a latent heat---absorbed at apparent constant ``temperature'' that,\n204: once paid, expands the addressable surface of language by orders of magnitude.\n205: \n206: We develop the argument through the lens of process mining, the discipline\n207: founded by Wil van der Aalst, in which behaviour recorded as event logs is checked\n208: for conformance against a model of how it ought to unfold\n209: \\citep{pm-manifesto-2011,vdaalst-book-2016}. We contend that when LSP is\n210: generalised beyond source code to all forms of language---natural language,\n211: legal and regulatory text, mathematics, biological sequence, music, and business\n212: process---each such language acquires an event log and therefore a conformance\n213: surface. Echoing van der Aalst's recent dictum that there is ``no AI without PI''\n214: (process intelligence), in which object-centric process mining is ``the missing\n215: link connecting data and processes'' \\citep{noai-nopi-2025}, we argue that there\n216: is no trustworthy conformance for all language without an object-centric event\n217: abstraction \\citep{ocel2-2024}.\n218: \n219: We instantiate the argument in \\lspmax, a law-state runtime projected through LSP\n220: whose \\code{ConformanceVector} keeps \\admitted, \\refused, and \\unknownstat{} law\n221: axes strictly distinct, whose diagnostics are emitted as object-centric events\n222: (OCEL~2.0), and whose claims are graded only by bounded status \\citep{lspmax}.\n223: Using design-science methodology \\citep{hevner2004,peffers2007}, we present the\n224: artifact, a fusion architecture, and a 2030 roadmap. Throughout, we adopt the\n225: artifact's own epistemic discipline: we grade each claim as \\admitted, \\refused,\n226: or \\unknownstat; we mark every projection as a \\forecast; and we decline the\n227: language of triumph.\n228: \n229: \\vfill\n230: \\noindent\\textbf{Keywords:} process mining; conformance checking; object-centric\n231: event logs; Language Server Protocol; Model Context Protocol; Agent-to-Agent\n232: protocol; agentic AI; law-state runtime; protocol convergence.\n233: \n234: % ---------------------------------------------------------- Epistemic note\n235: \\chapter*{A Note on Method and Language}\n236: \\addcontentsline{toc}{chapter}{A Note on Method and Language}\n237: \\markboth{A Note on Method and Language}{A Note on Method and Language}\n238: \n239: This thesis studies an artifact, \\lspmax, whose constitution forbids\n240: \\emph{victory language}---unbounded declarations such as ``solved'' or\n241: ``guaranteed''---and instead requires every claim to carry a \\emph{bounded\n242: status} and, where admission is asserted, a \\emph{receipt}: a content-addressed\n243: record binding a digest, a boundary, and a negative-control result\n244: \\citep{lspmax}. It would be inconsistent to describe such an artifact in the\n245: register it refuses. We therefore adopt its discipline as our own. Findings are\n246: graded \\admitted{} (evidence present and checked), \\refused{} (evidence present,\n247: contrary), or \\unknownstat{} (admissibility not yet determinable); intermediate\n248: grades \\candidate, \\partialstat, and \\openstat{} are used where appropriate. The\n249: three states never collapse into one another: an \\unknownstat{} is never quietly\n250: promoted to \\admitted. Numerical predictions about 2030 are commercial or\n251: analyst forecasts, not measurements, and are marked \\forecast. Quotations from\n252: primary specifications are reproduced verbatim and cited to the revision in force\n253: at the time of writing; the reader is cautioned that living specifications\n254: (MCP, A2A, and LSP~3.18 among them) continue to evolve.\n255: \n256: % ---------------------------------------------------------------- Contents\n257: \\cleardoublepage\n258: \\tableofcontents\n259: \\listoffigures\n260: \\listoftables\n261: \n262: % ============================================================================\n263: \\cleardoublepage\n264: \\pagenumbering{arabic}\n265: \\setcounter{page}{1}\n266: % ============================================================================\n267: %\n268: % Chapters are maintained as separate files under chapters/ and included\n269: % below. Each \\input is uncommented as the chapter is written, so that the\n270: % document always compiles with whatever content currently exists.\n271: %\n272: \\input{chapters/01-introduction} % Ch 1: Introduction; thesis statement; RQs\n273: \\input{chapters/02-background} % Ch 2: Process mining; LSP; MCP; A2A\n274: \\input{chapters/02b-recent-advances} % (closing section of Ch 2: recent arXiv 2025-2026)\n275: \\input{chapters/02a-math-foundations} % Ch 3: Mathematical foundations (algebra/logic/analysis/geometry)\n276: \\input{chapters/03-conceptual-framework} % Ch 4: Language as process; phase transition\n277: \\input{chapters/04-methodology} % Ch 5: Design science; bounded-status epistemics\n278: \\input{chapters/05-artifact} % Ch 6: The lsp-max artifact\n279: \\input{chapters/06-fusion} % Ch 7: The LSP x MCP x A2A fusion architecture\n280: \\input{chapters/07-all-language} % Ch 8: Conformance checking for all language\n281: \\input{chapters/08-vision-2030} % Ch 9: The phase transition realised; roadmap\n282: \\input{chapters/09-discussion} % Ch 10: RQs revisited; threats to validity\n283: \\input{chapters/10-conclusion} % Ch 11: Contributions; future work\n284: % NOTE: chapter numbers follow \\input order, not file names.\n285: %\n286: % ============================================================================\n287: \n288: % ---------------------------------------------------------------- References\n289: \\cleardoublepage\n290: \\printbibliography[heading=bibintoc,title={References}]\n291: \n292: % ---------------------------------------------------------------- Appendices\n293: \\appendix\n294: \\input{chapters/A-method-catalog} % App A: the max/* method catalogue\n295: \\input{chapters/B-law-table} % App B: laws and bounded-status vocabulary\n296: \\input{chapters/C-timeline} % App C: protocol timeline 2016--2030\n297: \n298: \\end{document}\n299: \n```\n\nCompile log (tail):\n```\npfb>\nOutput written on main.pdf (79 pages, 880367 bytes).\nPDF statistics:\n 882 PDF objects out of 1000 (max. 8388607)\n 715 compressed objects within 8 object streams\n 336 named destinations out of 1000 (max. 500000)\n 162317 words of extra memory for PDF output out of 184870 (max. 10000000)\n```", "repo_url": "https://github.com/seanchatmangpt/lsp-max"} {"bib": false, "lane": "project", "file_edits": [{"file": "11b-appendices/wlv-table-alt.tex", "search": " $\\bm{W \\to e \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to e \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/wlv-table-alt.tex", "search": " $\\bm{W \\to \\mu \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to \\mu \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/wlv-table-alt.tex", "search": " $\\bm{W \\to \\tau \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to \\tau \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/wlv-table-nominal.tex", "search": " $\\bm{W \\to \\tau \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to \\tau \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/wlv-table-nominal.tex", "search": " $\\bm{W \\to \\mu \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to \\mu \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/wlv-table-nominal.tex", "search": " $\\bm{W \\to e \\nu}$ &&&&&\\\\", "replace": " $\\bm{W \\to e \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zjets-table-alt.tex", "search": " $\\bm{Z \\to e e}$ &&&&&\\\\", "replace": " $\\bm{Z \\to e e}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zjets-table-alt.tex", "search": " $\\bm{Z \\to \\mu \\mu}$ &&&&&\\\\", "replace": " $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zjets-table-alt.tex", "search": " $\\bm{Z \\to \\tau \\tau}$ &&&&&\\\\", "replace": " $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zjets-table-alt.tex", "search": " $\\bm{Z \\to \\nu \\nu}$ &&&&&\\\\", "replace": " $\\bm{Z \\to \\nu \\nu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zll-table-nominal.tex", "search": " $\\bm{Z \\to \\tau \\tau}$ &&&&&\\\\", "replace": " $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zll-table-nominal.tex", "search": " $\\bm{Z \\to \\mu \\mu}$ &&&&&\\\\", "replace": " $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\", "type": "real"}, {"file": "11b-appendices/zll-table-nominal.tex", "search": " $\\bm{Z \\to e e}$ &&&&&\\\\", "replace": " $\\bm{Z \\to e e}$ &&&&&&\\\\", "type": "real"}], "reported_file": "11b-appendices/zll-table-nominal.tex", "fix_files": ["11b-appendices/wlv-table-alt.tex", "11b-appendices/wlv-table-nominal.tex", "11b-appendices/zjets-table-alt.tex", "11b-appendices/zll-table-nominal.tex"], "single_shot_visible": true, "error_lines": [{"line": 59, "text": "Extra alignment tab has been changed to \\cr.", "file": "11b-appendices/zll-table-nominal.tex", "fileLabel": "zll-table-nominal.tex"}, {"line": 28, "text": "Extra alignment tab has been changed to \\cr.", "file": "11b-appendices/wlv-table-alt.tex", "fileLabel": "wlv-table-alt.tex"}, {"line": 34, "text": "Extra alignment tab has been changed to \\cr.", "file": "11b-appendices/zjets-table-alt.tex", "fileLabel": "zjets-table-alt.tex"}], "log_tail": "c/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (113 pages, 29543826 bytes).\nPDF statistics:\n 5758 PDF objects out of 6186 (max. 8388607)\n 3045 compressed objects within 31 object streams\n 392 named destinations out of 1000 (max. 500000)\n 1087 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `11b-appendices/zll-table-nominal.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- 11b-appendices/zll-table-nominal.tex line 59: Extra alignment tab has been changed to \\cr.\n- 11b-appendices/wlv-table-alt.tex line 28: Extra alignment tab has been changed to \\cr.\n- 11b-appendices/zjets-table-alt.tex line 34: Extra alignment tab has been changed to \\cr.\n\nProject files:\n- .gitignore\n- .gitlab-ci.yml\n- 00a-abstract/abstract.tex\n- 00b-acknowledgements/acknowledgements.tex\n- 00c-declaration/declaration.tex\n- 01-introduction/analysis-roadmap.tex\n- 01-introduction/introduction-body.tex\n- 01-introduction/introduction.tex\n- 02-phys-theory/feyn-higgs-prod.tex\n- 02-phys-theory/feyn-vhbb.tex\n- 02-phys-theory/higgs-pot-01.tex\n- 02-phys-theory/higgs-pot-02.tex\n- 02-phys-theory/sm-lang.tex\n- 02-phys-theory/sm-table.tex\n- 02-phys-theory/theory-body.tex\n- 02-phys-theory/theory.tex\n- 03-detector/detector-body.tex\n- 03-detector/detector.tex\n- 03-detector/dipole.tex\n- 03-detector/impact-params-standalone.tex\n- 03-detector/impact-params.tex\n- 03-detector/quadrupole.tex\n- 03-detector/rf_cavity.tex\n- 03-detector/sagitta.tex\n- 03-detector/sagitta_standalone.tex\n- 04-machine-learning/bdt.tex\n- 04-machine-learning/grad-desc.tex\n- 04-machine-learning/machine-learning-body.tex\n- 04-machine-learning/machine-learning.tex\n- 04-machine-learning/nn.tex\n- 04-machine-learning/pnn.tex\n- 05-reconstruction-and-selection/btag-wps.tex\n- 05-reconstruction-and-selection/cxaod-flow.tex\n- 05-reconstruction-and-selection/data-flow-chart.tex\n- 05-reconstruction-and-selection/event-selection.tex\n- 05-reconstruction-and-selection/jet-categories.tex\n- 05-reconstruction-and-selection/jvt.tex\n- 05-reconstruction-and-selection/pcbt-fig.tex\n- 05-reconstruction-and-selection/reconstruction-and-selection-body.tex\n- 05-reconstruction-and-selection/reconstruction-and-selection.tex\n- ... (93 more)\n\nOther project files (edit them with ):\n\n`11b-appendices/wlv-table-alt.tex` (full file, line-numbered):\n```\n1: \\begin{table}[!htb]\n2: \\centering\n3: \\resizebox{\\textwidth}{!}{\n4: \\begin{tabular}{llrrrr}\n5: \\toprule\n6: DS ID & Process & $\\sigma\\times\\text{BR}$ [pb] & $k$-factor & $\\epsilon_{\\text{filter}}$ & Events \\\\\n7: \\midrule\n8: $\\bm{W \\to e \\nu}$ &&&&&\\\\\n9: 361520 & $W \\to e\\nu$ Np=0 & 13939.0 & 1.2019 & 1.0 & 13936475\\\\\n10: 361521 & $W \\to e\\nu$ Np=1 & 1894.0 & 1.2019 & 1.0 & 9432600\\\\\n11: 361522 & $W \\to e\\nu$ Np=2 & 642.66 & 1.2019 & 1.0 & 6490000\\\\\n12: 361523 & $W \\to e\\nu$ Np=3 & 179.18 & 1.2019 & 1.0 & 3499000\\\\\n13: 361524 & $W \\to e\\nu$ Np=4 & 70.785 & 1.2019 & 1.0 & 4456600\\\\\n14: $\\bm{W \\to \\mu \\nu}$ &&&&&\\\\\n15: 361525 & $W \\to \\mu\\nu$ Np=0 & 13935.0 & 1.2019 & 1.0 & 13922800\\\\\n16: 361526 & $W \\to \\mu\\nu$ Np=1 & 1893.3 & 1.2019 & 1.0 & 9456750\\\\\n17: 361527 & $W \\to \\mu\\nu$ Np=2 & 642.7 & 1.2019 & 1.0 & 6488600\\\\\n18: 361528 & $W \\to \\mu\\nu$ Np=3 & 179.19 & 1.2019 & 1.0 & 3483000\\\\\n19: 361529 & $W \\to \\mu\\nu$ Np=4 & 70.761 & 1.2019 & 1.0 & 4487400\\\\\n20: $\\bm{W \\to \\tau \\nu}$ &&&&&\\\\\n21: 361530 & $W \\to \\tau\\nu$ Np=0 & 13920.0 & 1.2019 & 1.0 & 13982400\\\\\n22: 361531 & $W \\to \\tau\\nu$ Np=1 & 1891.9 & 1.2019 & 1.0 & 9455400\\\\\n23: 361532 & $W \\to \\tau\\nu$ Np=2 & 641.87 & 1.2019 & 1.0 & 6492400\\\\\n24: 361533 & $W \\to \\tau\\nu$ Np=3 & 179.21 & 1.2019 & 1.0 & 3533000\\\\\n25: 361534 & $W \\to \\tau\\nu$ Np=4 & 71.012 & 1.2019 & 1.0 & 4473600\\\\\n26: \\bottomrule\n27: \\end{tabular}\n28: }\n29: \\caption{Alternative $W \\to \\ell \\nu$ samples used in the analysis, which are\n30: all generated using \\textsc{MadGraph} + \\textsc{Pythia}~8.}\n31: \\label{tabular:wjetsAlternativeSamples}\n32: \\end{table}\n```\n\n`11b-appendices/zjets-table-alt.tex` (full file, line-numbered):\n```\n1: \\begin{table}[!htb]\n2: \\centering\n3: \\resizebox{\\textwidth}{!}{\n4: \\begin{tabular}{llrrrr}\n5: \\toprule\n6: DS ID & Process & $\\sigma\\times\\text{BR}$ [pb] & $k$-factor & $\\epsilon_{\\text{filter}}$ & Events \\\\\n7: \\midrule\n8: $\\bm{Z \\to e e}$ &&&&&\\\\\n9: 361500 & $Z \\to ee$ Np=0 & 1401.6 & 1.232 & 1.0 & 6871800\\\\\n10: 361501 & $Z \\to ee$ Np=1 & 211.99 & 1.232 & 1.0 & 3597000\\\\\n11: 361502 & $Z \\to ee$ Np=2 & 67.305 & 1.232 & 1.0 & 2540800\\\\\n12: 361503 & $Z \\to ee$ Np=3 & 18.679 & 1.232 & 0.99 & 634200\\\\\n13: 361504 & $Z \\to ee$ Np=4 & 7.291 & 1.232 & 1.0 & 222500\\\\\n14: $\\bm{Z \\to \\mu \\mu}$ &&&&&\\\\\n15: 361505 & $Z \\to \\mu\\mu$ Np=0 & 1402 & 1.232 & 1.0 & 6878400\\\\\n16: 361506 & $Z \\to \\mu\\mu$ Np=1 & 211.95 & 1.232 & 1.0 & 3599000\\\\\n17: 361507 & $Z \\to \\mu\\mu$ Np=2 & 67.353 & 1.232 & 1.0 & 2542600\\\\\n18: 361508 & $Z \\to \\mu\\mu$ Np=3 & 18.633 & 1.232 & 1.0 & 633200\\\\\n19: 361509 & $Z \\to \\mu\\mu$ Np=4 & 7.3013& 1.232 & 1.0 & 220500\\\\\n20: $\\bm{Z \\to \\tau \\tau}$ &&&&&\\\\\n21: 361510 & $Z \\to \\tau\\tau$ Np=0 & 1397.8& 1.232 & 1.0 & 6840000\\\\\n22: 361511 & $Z \\to \\tau\\tau$ Np=1 & 211.4& 1.232 & 1.0 & 3391000\\\\\n23: 361512 & $Z \\to \\tau\\tau$ Np=2 & 67.176& 1.232 & 1.0 & 2542000\\\\\n24: 361513 & $Z \\to \\tau\\tau$ Np=3 & 18.609& 1.232 & 1.0 & 634200\\\\\n25: 361514 & $Z \\to \\tau\\tau$ Np=4 & 7.2749& 1.232 & 1.0 & 224500\\\\\n26: $\\bm{Z \\to \\nu \\nu}$ &&&&&\\\\\n27: 361515 & $Z \\to \\nu\\nu$ Np=0 & 7518.4 & 1.2283 & 1.0 & 1645600\\\\ \n28: 361516 & $Z \\to \\nu\\nu$ Np=1 & 1200.1& 1.2283 & 1.0 & 10767600\\\\\n29: 361517 & $Z \\to \\nu\\nu$ Np=2 & 387.16& 1.2283 & 1.0 & 6096200\\\\\n30: 361518 & $Z \\to \\nu\\nu$ Np=3 & 110.08& 1.2283 & 1.0 & 3801800\\\\\n31: 361519 & $Z \\to \\nu\\nu$ Np=4 & 43.389& 1.2283 & 1.0 & 2835100\\\\\n32: \\bottomrule\n33: \\end{tabular}\n34: }\n35: \\caption{Alternative Z + jets samples used in the analysis, which are all\n36: generated using \\textsc{MadGraph} + \\textsc{Pythia}~8.}\n37: \\label{tabular:zjetsAlternativeSamples}\n38: \\end{table}\n```\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,12pt, oneside]{memoir}\n2: \n3: \\include{thesis.preamble}\n4: \\setlrmarginsandblock{4cm}{2cm}{*}\n5: \\setulmarginsandblock{2.5cm}{*}{1}\n6: \\checkandfixthelayout \n7: \n8: \\begin{document}\n9: \n10: \\title{Measurements of $H \\rightarrow b\\bar{b}$ decays and $VH$ production}\n11: \n12: \\author{Thomas Charman}\n13: \\submitdate{\\today}\n14: \n15: \\pagenumbering{arabic}\n16: \\doublespacing\n17: \\maketitle\n18: \n19: %\\input{00c-declaration/declaration}\n20: %\\input{00a-abstract/abstract}\n21: %\\input{00b-acknowledgements/acknowledgements}\n22: \\setcounter{tocdepth}{3}\n23: \\tableofcontents*\n24: %\\listoffigures\n25: %\\listoftables\n26: \n27: \\input{01-introduction/introduction-body}\n28: \\input{02-phys-theory/theory-body}\n29: \\input{03-detector/detector-body}\n30: \\input{04-machine-learning/machine-learning-body}\n31: \\input{05-reconstruction-and-selection/reconstruction-and-selection-body}\n32: \\input{06-analysis-strategy/strategy-body}\n33: \\input{07-systematic-errors/systematics-body}\n34: \\input{08-fit-models/fit-models-body}\n35: \\input{09-results/results-body}\n36: \\input{10-conclusion/conclusion-body}\n37: \n38: \\bibliographystyle{unsrtnat}\n39: \\bibliography{11a-bibliography/thesis.bib}\n40: \n41: \\clearpage\n42: \\appendix\n43: \\begin{appendices}\n44: \\input{11b-appendices/truth-tag-pcbt}\n45: \\input{11b-appendices/samples}\n46: \\end{appendices}\n47: \\end{document}\n```\n\nCurrent content of `11b-appendices/zll-table-nominal.tex` (full file, line-numbered):\n```\n1: % For Moriond 2017 the samples are produced as:\n2: % Z\\tau\\tau: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8801/\n3: % Z\\mu\\mu: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8613/\n4: % Zee: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8722/\n5: \\begin{table}[!htb]\n6: \\centering\n7: \\resizebox{\\textwidth}{!}{\n8: \\begin{tabular}{llrrrr}\n9: \\toprule\n10: DS ID & Process & $\\sigma\\times\\text{BR}$ [pb] & $k$-factor & $\\epsilon_{\\text{filter}}$ & Events \\\\\n11: \\midrule\n12: $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\\n13: 364128 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1981.6 &0.9751 & 0.82142 & 7996000\\\\ \n14: 364129 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1978.8 &0.9751 & 0.11314 & 4999000\\\\ \n15: 364130 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1981.8 &0.9751 & 0.064453 & 7995800\\\\ \n16: 364131 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 110.37 &0.9751 & 0.68883 & 5998500\\\\ \n17: 364132 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 110.51 &0.9751 & 0.1829 & 1999200\\\\ \n18: 364133 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 110.87 &0.9751 & 0.110886 & 5999550\\\\ \n19: 364134 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 40.781 &0.9751 & 0.60821 & 5000000\\\\ \n20: 364135 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 40.74 &0.9751 & 0.22897 & 3000000 \\\\ \n21: 364136 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 40.761 &0.9751 & 0.13442 & 4999950\\\\ \n22: 364137 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.5502 &0.9751 & 0.56036 & 2000000\\\\ \n23: 364138 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.6707 &0.9751 & 0.26245 & 1000000 \\\\ \n24: 364139 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.6804 &0.9751 & 0.17313 & 1999950\\\\ \n25: 364140 & $Z \\to \\tau \\tau$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.8096 &0.9751 & 1.0 \t & 2999800\\\\ \n26: 364141 & $Z \\to \\tau \\tau$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14834 &0.9751 & 1.0 \t & 1000000\\\\\n27: $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\\n28: 364100 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1983.0 & 0.9751& 0.8221 & 7982000\\\\\n29: 364101 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1978.4 & 0.9751& 0.11308 & 4983000\\\\\n30: 364102 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1982.2 & 0.9751& 0.064161& 7984000\\\\\n31: 364103 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 108.92 & 0.9751& 0.68873 & 5983000\\\\\n32: 364104 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 109.42 & 0.9751& 0.18596 & 1996800\\\\\n33: 364105 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 108.91 & 0.9751& 0.11375 & 5981600\\\\\n34: 364106 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 39.878 & 0.9751& 0.60899 & 5000000\\\\\n35: 364107 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 39.795 & 0.9751& 0.23308 & 3000000\\\\\n36: 364108 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 39.908 & 0.9751& 0.14618 & 12499900\\\\\n37: 364109 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.5375 & 0.9751& 0.55906 & 2000000\\\\\n38: 364110 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.5403 & 0.9751& 0.26528 & 999600\\\\\n39: 364111 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.4932 & 0.9751& 0.17559 & 1999400\\\\\n40: 364112 & $Z \\to \\mu \\mu$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.7881 & 0.9751& 1.0 & 2996500\\\\\n41: 364113 & $Z \\to \\mu \\mu$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14769 & 0.9751& 1.0 & 1000000\\\\\n42: $\\bm{Z \\to e e}$ &&&&&&\\\\\n43: 364114 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1981.8 & 0.9751& 0.82106 & 8000000\\\\\n44: 364115 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1980.8 & 0.9751& 0.11295 & 4999000\\\\\n45: 364116 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1981.7 & 0.9751& 0.063809& 7995600\\\\\n46: 364117 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 110.5 & 0.9751& 0.69043 & 5997000\\\\\n47: 364118 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 110.63 & 0.9751& 0.18382 & 1999200\\\\\n48: 364119 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 110.31 & 0.9751& 0.11443 & 5970000\\\\\n49: 364120 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 40.731 & 0.9751& 0.61452 & 5000000\\\\\n50: 364121 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 40.67 & 0.9751& 0.23044 & 3000000\\\\\n51: 364122 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 40.694 & 0.9751& 0.14927 & 12499600\\\\\n52: 364123 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.6743 & 0.9751& 0.56134 & 1999800\\\\\n53: 364124 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.6711 & 0.9751& 0.26294 & 999900 \\\\\n54: 364125 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.6766 & 0.9751& 0.17223 & 1999850 \\\\\n55: 364126 & $Z \\to e e$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.8081 & 0.9751& 1.0 \t& 3000000 \\\\\n56: 364127 & $Z \\to e e$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14857 & 0.9751& 1.0 \t& 1000000 \\\\\n57: \\bottomrule\n58: \\end{tabular}\n59: }\n60: \\caption{$Z \\to \\ell\\ell$ samples used in the analysis, which are all\n61: generated using \\textsc{Sherpa}~2.2.1.}\n62: \\label{tabular:mc_samples_Zlljets}\n63: \\end{table}\n```\n\nCompile log (tail):\n```\nc/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (113 pages, 29543826 bytes).\nPDF statistics:\n 5758 PDF objects out of 6186 (max. 8388607)\n 3045 compressed objects within 31 object streams\n 392 named destinations out of 1000 (max. 500000)\n 1087 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n $\\bm{Z \\to e e}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to e e}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to \\mu \\mu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to \\tau \\tau}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to \\nu \\nu}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to \\nu \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to \\tau \\tau}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to \\mu \\mu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{Z \\to e e}$ &&&&&&\\\\\n=======\n $\\bm{Z \\to e e}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to e \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to e \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to \\mu \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to \\mu \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to \\tau \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to \\tau \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to \\tau \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to \\tau \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to \\mu \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to \\mu \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\bm{W \\to e \\nu}$ &&&&&&\\\\\n=======\n $\\bm{W \\to e \\nu}$ &&&&&\\\\\n>>>>>>> REPLACE\n", "id": "github_tom-charman__thesis__f752db3", "doc": "github_multi/tom-charman__thesis__f752db3", "mutation": "real", "source": "github", "repo": "tom-charman/thesis", "sha": "f752db36290d6e06c04f33edec5963b15c54bd7d", "parent_sha": "abefea912963e5e74080fe85fbcdb1cd0e1c9043", "license": "CC-BY-SA-4.0", "url": "https://github.com/tom-charman/thesis/commit/f752db36290d6e06c04f33edec5963b15c54bd7d", "changed_files": ["11b-appendices/wlv-table-alt.tex", "11b-appendices/wlv-table-nominal.tex", "11b-appendices/zjets-table-alt.tex", "11b-appendices/zll-table-nominal.tex"], "original_root": "thesis.tex", "n_files": 95, "engine": "pdflatex", "error_category": "Extra alignment tab has been changed to \\CS.", "prompt_v1": "The LaTeX file `11b-appendices/zll-table-nominal.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- 11b-appendices/zll-table-nominal.tex line 59: Extra alignment tab has been changed to \\cr.\n- 11b-appendices/wlv-table-alt.tex line 28: Extra alignment tab has been changed to \\cr.\n- 11b-appendices/zjets-table-alt.tex line 34: Extra alignment tab has been changed to \\cr.\n\nProject files:\n- .gitignore\n- .gitlab-ci.yml\n- 00a-abstract/abstract.tex\n- 00b-acknowledgements/acknowledgements.tex\n- 00c-declaration/declaration.tex\n- 01-introduction/analysis-roadmap.tex\n- 01-introduction/introduction-body.tex\n- 01-introduction/introduction.tex\n- 02-phys-theory/feyn-higgs-prod.tex\n- 02-phys-theory/feyn-vhbb.tex\n- 02-phys-theory/higgs-pot-01.tex\n- 02-phys-theory/higgs-pot-02.tex\n- 02-phys-theory/sm-lang.tex\n- 02-phys-theory/sm-table.tex\n- 02-phys-theory/theory-body.tex\n- 02-phys-theory/theory.tex\n- 03-detector/detector-body.tex\n- 03-detector/detector.tex\n- 03-detector/dipole.tex\n- 03-detector/impact-params-standalone.tex\n- 03-detector/impact-params.tex\n- 03-detector/quadrupole.tex\n- 03-detector/rf_cavity.tex\n- 03-detector/sagitta.tex\n- 03-detector/sagitta_standalone.tex\n- 04-machine-learning/bdt.tex\n- 04-machine-learning/grad-desc.tex\n- 04-machine-learning/machine-learning-body.tex\n- 04-machine-learning/machine-learning.tex\n- 04-machine-learning/nn.tex\n- 04-machine-learning/pnn.tex\n- 05-reconstruction-and-selection/btag-wps.tex\n- 05-reconstruction-and-selection/cxaod-flow.tex\n- 05-reconstruction-and-selection/data-flow-chart.tex\n- 05-reconstruction-and-selection/event-selection.tex\n- 05-reconstruction-and-selection/jet-categories.tex\n- 05-reconstruction-and-selection/jvt.tex\n- 05-reconstruction-and-selection/pcbt-fig.tex\n- 05-reconstruction-and-selection/reconstruction-and-selection-body.tex\n- 05-reconstruction-and-selection/reconstruction-and-selection.tex\n- ... (93 more)\n\nCurrent content of `11b-appendices/zll-table-nominal.tex` (full file, line-numbered):\n```\n1: % For Moriond 2017 the samples are produced as:\n2: % Z\\tau\\tau: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8801/\n3: % Z\\mu\\mu: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8613/\n4: % Zee: https://prodtask-dev.cern.ch/prodtask/inputlist_with_request/8722/\n5: \\begin{table}[!htb]\n6: \\centering\n7: \\resizebox{\\textwidth}{!}{\n8: \\begin{tabular}{llrrrr}\n9: \\toprule\n10: DS ID & Process & $\\sigma\\times\\text{BR}$ [pb] & $k$-factor & $\\epsilon_{\\text{filter}}$ & Events \\\\\n11: \\midrule\n12: $\\bm{Z \\to \\tau \\tau}$ &&&&&&\\\\\n13: 364128 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1981.6 &0.9751 & 0.82142 & 7996000\\\\ \n14: 364129 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1978.8 &0.9751 & 0.11314 & 4999000\\\\ \n15: 364130 & $Z \\to \\tau \\tau$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1981.8 &0.9751 & 0.064453 & 7995800\\\\ \n16: 364131 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 110.37 &0.9751 & 0.68883 & 5998500\\\\ \n17: 364132 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 110.51 &0.9751 & 0.1829 & 1999200\\\\ \n18: 364133 & $Z \\to \\tau \\tau$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 110.87 &0.9751 & 0.110886 & 5999550\\\\ \n19: 364134 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 40.781 &0.9751 & 0.60821 & 5000000\\\\ \n20: 364135 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 40.74 &0.9751 & 0.22897 & 3000000 \\\\ \n21: 364136 & $Z \\to \\tau \\tau$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 40.761 &0.9751 & 0.13442 & 4999950\\\\ \n22: 364137 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.5502 &0.9751 & 0.56036 & 2000000\\\\ \n23: 364138 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.6707 &0.9751 & 0.26245 & 1000000 \\\\ \n24: 364139 & $Z \\to \\tau \\tau$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.6804 &0.9751 & 0.17313 & 1999950\\\\ \n25: 364140 & $Z \\to \\tau \\tau$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.8096 &0.9751 & 1.0 \t & 2999800\\\\ \n26: 364141 & $Z \\to \\tau \\tau$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14834 &0.9751 & 1.0 \t & 1000000\\\\\n27: $\\bm{Z \\to \\mu \\mu}$ &&&&&&\\\\\n28: 364100 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1983.0 & 0.9751& 0.8221 & 7982000\\\\\n29: 364101 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1978.4 & 0.9751& 0.11308 & 4983000\\\\\n30: 364102 & $Z \\to \\mu \\mu$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1982.2 & 0.9751& 0.064161& 7984000\\\\\n31: 364103 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 108.92 & 0.9751& 0.68873 & 5983000\\\\\n32: 364104 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 109.42 & 0.9751& 0.18596 & 1996800\\\\\n33: 364105 & $Z \\to \\mu \\mu$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 108.91 & 0.9751& 0.11375 & 5981600\\\\\n34: 364106 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 39.878 & 0.9751& 0.60899 & 5000000\\\\\n35: 364107 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 39.795 & 0.9751& 0.23308 & 3000000\\\\\n36: 364108 & $Z \\to \\mu \\mu$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 39.908 & 0.9751& 0.14618 & 12499900\\\\\n37: 364109 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.5375 & 0.9751& 0.55906 & 2000000\\\\\n38: 364110 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.5403 & 0.9751& 0.26528 & 999600\\\\\n39: 364111 & $Z \\to \\mu \\mu$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.4932 & 0.9751& 0.17559 & 1999400\\\\\n40: 364112 & $Z \\to \\mu \\mu$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.7881 & 0.9751& 1.0 & 2996500\\\\\n41: 364113 & $Z \\to \\mu \\mu$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14769 & 0.9751& 1.0 & 1000000\\\\\n42: $\\bm{Z \\to e e}$ &&&&&&\\\\\n43: 364114 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-veto-b-veto & 1981.8 & 0.9751& 0.82106 & 8000000\\\\\n44: 364115 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, c-filter-b-veto & 1980.8 & 0.9751& 0.11295 & 4999000\\\\\n45: 364116 & $Z \\to e e$, $0<\\text{max}(H_T,p_{\\text{T}}^Z)<70$ \\GeV, b-filter & 1981.7 & 0.9751& 0.063809& 7995600\\\\\n46: 364117 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-veto-b-veto & 110.5 & 0.9751& 0.69043 & 5997000\\\\\n47: 364118 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, c-filter-b-veto & 110.63 & 0.9751& 0.18382 & 1999200\\\\\n48: 364119 & $Z \\to e e$, $70<\\text{max}(H_T,p_{\\text{T}}^Z)<140$ \\GeV, b-filter & 110.31 & 0.9751& 0.11443 & 5970000\\\\\n49: 364120 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-veto-b-veto & 40.731 & 0.9751& 0.61452 & 5000000\\\\\n50: 364121 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, c-filter-b-veto & 40.67 & 0.9751& 0.23044 & 3000000\\\\\n51: 364122 & $Z \\to e e$, $140<\\text{max}(H_T,p_{\\text{T}}^Z)<280$ \\GeV, b-filter & 40.694 & 0.9751& 0.14927 & 12499600\\\\\n52: 364123 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-veto-b-veto & 8.6743 & 0.9751& 0.56134 & 1999800\\\\\n53: 364124 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, c-filter-b-veto & 8.6711 & 0.9751& 0.26294 & 999900 \\\\\n54: 364125 & $Z \\to e e$, $280<\\text{max}(H_T,p_{\\text{T}}^Z)<500$ \\GeV, b-filter & 8.6766 & 0.9751& 0.17223 & 1999850 \\\\\n55: 364126 & $Z \\to e e$, $500<\\text{max}(H_T,p_{\\text{T}}^Z)<1000$ \\GeV & 1.8081 & 0.9751& 1.0 \t& 3000000 \\\\\n56: 364127 & $Z \\to e e$, $1000<\\text{max}(H_T,p_{\\text{T}}^Z)<13000$ \\GeV & 0.14857 & 0.9751& 1.0 \t& 1000000 \\\\\n57: \\bottomrule\n58: \\end{tabular}\n59: }\n60: \\caption{$Z \\to \\ell\\ell$ samples used in the analysis, which are all\n61: generated using \\textsc{Sherpa}~2.2.1.}\n62: \\label{tabular:mc_samples_Zlljets}\n63: \\end{table}\n```\n\nCompile log (tail):\n```\nc/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (113 pages, 29543826 bytes).\nPDF statistics:\n 5758 PDF objects out of 6186 (max. 8388607)\n 3045 compressed objects within 31 object streams\n 392 named destinations out of 1000 (max. 500000)\n 1087 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/tom-charman/thesis"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[table]{xcolor}\n\\definecolor{hdrblue}{RGB}{60,90,160}\n\\definecolor{wingreen}{RGB}{180,240,180}\n\\definecolor{lossred}{RGB}{255,180,180}\n\\definecolor{dro}{RGB}{0,128,0}\n\\definecolor{naive}{RGB}{200,0,0}", "replace": "\\usepackage{xcolor}", "type": "real"}, {"file": "main.tex", "search": "\\author{Srujan Sai \\\\ Indian Institute of Technology Gandhinagar \\\\ \\texttt{srujan.sai@iitgn.ac.in}}", "replace": "\\author{Srujan Sai \\\\\\nIndian Institute of Technology Gandhinagar \\\\\\n\\texttt{srujan.sai@iitgn.ac.in}}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 25, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 34, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 37, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 44, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 45, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 46, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 48, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 49, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 50, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 52, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 53, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 54, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "t/fonts/type1/public/amsfonts/cm/cmsy7.pfb>\nOutput written on main.pdf (6 pages, 427359 bytes).\nPDF statistics:\n 212 PDF objects out of 1000 (max. 8388607)\n 148 compressed objects within 2 object streams\n 37 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 25: Undefined control sequence.\n- line 34: Undefined control sequence.\n- line 37: Undefined control sequence.\n- line 44: Undefined control sequence.\n- line 45: Undefined control sequence.\n- line 46: Undefined control sequence.\n- line 48: Undefined control sequence.\n- line 49: Undefined control sequence.\n- line 50: Undefined control sequence.\n- line 52: Undefined control sequence.\n- line 53: Undefined control sequence.\n- line 54: Undefined control sequence.\n\nProject files:\n- auto_generated/key_findings.tex\n- auto_generated/tabular_results.tex\n- auto_generated/wilcoxon.tex\n- main.tex\n- references.bib\n- sections/attack_design.tex\n- sections/conclusion.tex\n- sections/discussion.tex\n- sections/experimental_setup.tex\n- sections/introduction.tex\n- sections/related_work.tex\n- sections/results.tex\n\nOther project files (edit them with ):\n\n`sections/introduction.tex` (full file, line-numbered):\n```\n1: Algorithmic fairness has become critical as machine learning systems deploy in high-stakes domains. A common approach enforces fairness constraints during training, such as Demographic Parity (DP)---equal positive prediction rates across protected groups---and Individual Fairness (IF)---similar individuals receiving similar predictions \\citep{hardt2016equality,dwork2012fairness}.\n2: \n3: Distributionally Robust Optimization (DRO) offers a principled framework for robustness to distributional shifts. DRO-FAIR formulates fairness as a constraint within DRO, learning parameters that satisfy fairness under the worst-case distribution within an uncertainty set \\citep{hashimoto2018fairness}.\n4: \n5: \\textbf{The Gap.} Existing evaluations use \\textit{random label noise}---uniformly flipping labels. This does not reflect adversarial scenarios where an attacker with knowledge of the fairness metric strategically corrupts the most impactful samples \\citep{solans2021poisoning}. To our knowledge, no prior work computes the \\textbf{exact gradient} of fairness metrics with respect to individual labels.\n6: \n7: \\textbf{Our Contributions.}\n8: (1) \\textit{FairnessTargetedPGD}: gradient-based attacks computing\n9: $\\partial(\\text{fairness})/\\partial y_i$ on each label.\n10: (2) The temperature ablation: fixing $\\tau=1$ across all $\\alpha$ (vs.\\\n11: the stepped $\\tau{=}100$ schedule for $\\alpha\\le 0.3$) is the\n12: single biggest determinant of whether DRO wins or loses on Adult DP\n13: under adversarial attack.\n14: (3) The IF k-NN ablation and the empirical-radii interpretation per\n15: Kuldeep's feedback (\\S\\ref{sec:results-tabular}).\n16: (4) The adversarial-vs-random comparison showing adversarial PGD\n17: raises DP by an order of magnitude more than random label noise at\n18: matched $\\alpha$ on Adult.\n19: \n```\n\n`sections/attack_design.tex` (full file, line-numbered):\n```\n1: \\subsection{Threat Model}\n2: The attacker modifies fraction $\\alpha$ of training labels, features, and protected attributes, with white-box access to the fairness metric.\n3: \n4: \\subsection{DP-only Attack}\n5: The gradient of the DP gap with respect to each label is:\n6: \\begin{equation}\n7: \\frac{\\partial (\\text{DP}_{\\text{gap}})}{\\partial y_i} = \\text{sign}(\\bar{y}_0 - \\bar{y}_1) \\times \\left(\\frac{\\mathbf{1}\\{a_i=0\\}}{n_0} - \\frac{\\mathbf{1}\\{a_i=1\\}}{n_1}\\right)\n8: \\end{equation}\n9: where $\\bar{y}_g$ is the mean label for group $g$. We flip the top-$\\alpha n$ samples with the largest positive gradient.\n10: \n11: \\subsection{IF-only Attack}\n12: Using a $k$-NN graph within each protected group:\n13: \\begin{equation}\n14: \\frac{\\partial (\\text{IF})}{\\partial y_i} = \\frac{\\text{agree}_i - \\text{disagree}_i}{k_{\\text{eff}}}\n15: \\end{equation}\n16: \n17: \\subsection{PGD Optimization}\n18: We run $\\mathrm{pgd\\_steps}{=}20$ iterative steps: (1) compute the\n19: fairness-metric gradient with respect to each label and feature\n20: perturbation (the feature-perturbation half maximises $|p_0-p_1|$\n21: directly for the DP and combined attacks, and falls back to\n22: classification loss only for the IF attack), (2) rank samples by\n23: gradient magnitude, (3) flip the top-$\\alpha$ labels, (4) repeat.\n24: After all steps we enforce the exact $\\alpha$ budget by keeping\n25: only the top-$\\alpha$ flips ranked by final gradient magnitude.\n26: The IF attack uses a k-NN graph ($k{=}5$ default; the ablation in\n27: \\S\\ref{sec:results-tabular} shows the attack is insensitive to $k$).\n28: \n```\n\n`sections/experimental_setup.tex` (full file, line-numbered):\n```\n1: \\subsection{Datasets}\n2: \\begin{table}[h]\n3: \\centering\n4: \\begin{tabular}{lrrll}\n5: \\toprule\n6: Dataset & Samples & Features & Protected & Task \\\\\n7: \\midrule\n8: Adult & 45,222 & 12 & Sex & Income $>$50K \\\\\n9: Credit & 30,000 & 22 & Sex & Default \\\\\n10: LSAC & 18,692 & 10 & Sex & Bar passage \\\\\n11: UTKFace & 23,705 & 512 (ResNet18) & Sex (binary) & Age $>$ 25 \\\\\n12: \\bottomrule\n13: \\end{tabular}\n14: \\caption{Datasets used in evaluation. UTKFace results are pending GPU\n15: access (\\texttt{SERVER\\_RUNBOOK.md}).}\n16: \\label{tab:datasets}\n17: \\end{table}\n18: \n19: \\subsection{Methods, Attacks, Hyperparameters}\n20: We compare Naive-FAIR (fixed Lagrange multiplier) vs.\\ DRO-FAIR\n21: (adaptive worst-case reweighting within a TV uncertainty set).\n22: Attacks: DP-only, IF-only, Combined, with $\\alpha\\in\\{0.0, 0.1, 0.2,\n23: 0.3, 0.4\\}$ (tabular) and $\\alpha\\in\\{0.0, 0.1, 0.2\\}$ (UTKFace, when\n24: unblocked). 3 seeds per cell in this paper; 3 additional seeds\n25: ($n{=}6$) are running to enable Wilcoxon $p<0.05$ (the minimum\n26: achievable $p$ with $n{=}3$ is $0.125$).\n27: \n28: Prediction temperature is fixed at $\\tau{=}1$ across all\n29: $\\alpha$ (per Kuldeep's Q12). The earlier $\\tau{=}100$ schedule for\n30: $\\alpha\\le 0.3$ is the artifact behind the previous ``DRO is\n31: fragile'' finding. Inner-loop PGD: $K_{\\mathrm{inner}}{=}10$,\n32: $\\mathrm{pgd\\_steps}{=}20$. Dual ascent: $\\eta_{\\lambda}{=}5\\!\\times\\!10^{-3}$,\n33: $\\lambda_{\\max}{=}1.5$, $\\lambda$ initialised at $0.0$.\n34: Algorithm-1 step order is $\\theta\\!\\to\\!\\lambda\\!\\to\\!\\tilde p$ and the\n35: inner max ascends $\\nabla g$ (not $\\lambda\\nabla g$).\n36: \n37: Statistical significance uses Wilcoxon signed-rank test on per-seed\n38: DP (or IF) deltas. No oracle information (true per-group corruption\n39: rates / mask) is ever passed to the trainer.\n40: \n```\n\n`sections/results.tex` (head and lines matching the log, line-numbered):\n```\n1: \\subsection{Tabular results (Adult, fixed $\\tau=1$)}\n2: \\label{sec:results-tabular}\n3: \n4: \\textbf{Headline.}\n5: Fixing $\\tau=1$ across all $\\alpha$ makes DRO-FAIR beat Naive-FAIR on DP\n6: at every $\\alpha$ on Adult, under both the DP-targeted and combined\n7: PGD attacks, and the advantage grows with $\\alpha$ as the theory\n8: predicts. Accuracy is equal-or-slightly-higher for DRO, so this is a\n9: free fairness win, not an accuracy trade.\n10: Table~\\ref{tab:tau1-adult} reports the clean-test numbers\n11: (mean over 3 seeds); full per-seed traces are in\n12: \\texttt{results/tau\\_ablation\\_tau1.json}.\n13: \n14: \\paragraph{Why the previous story is wrong.}\n15: Earlier results in this project (and the auto-generated tables\n16: archived in \\texttt{results/stale\\_pre\\_fix/}) used a stepped\n17: $\\tau$-schedule: $\\tau{=}100$ for $\\alpha\\le0.3$, $\\tau{=}1$ for\n18: $\\alpha{=}0.4$. Under that schedule DRO \\emph{lost} on Adult DP at\n19: $\\alpha{=}0.1$--$0.3$ (e.g.\\ $\\alpha{=}0.2$: Naive $0.327$ vs DRO\n20: $0.503$, mean of 3 seeds). Switching to a single fixed $\\tau{=}1$ for\n21: all $\\alpha$ (per Kuldeep's Q12) flips the verdict: DRO now wins on\n22: DP at every $\\alpha$ and the gap widens monotonically. The earlier\n23: ``DRO is fragile / inverts on Adult'' conclusion was a\n24: high-temperature artifact, not a real failure of DRO-FAIR.\n25: Table~\\ref{tab:tau-comparison} makes the contrast explicit.\n26: \n27: \\begin{table}[h]\n28: \\centering\\small\n29: \\caption{Adult, DP attack: the ``DRO is fragile'' story was a\n30: $\\tau{=}100$ artifact. Same hyperparameters, only\n```\n\n`sections/discussion.tex` (full file, line-numbered):\n```\n1: \\subsection{The Temperature ($\\tau$) Effect}\n2: \\label{sec:tau-discussion}\n3: \n4: Our central finding on the tabular side is that the prediction\n5: soft-max temperature $\\tau$ is the dominant knob for whether DRO\n6: wins or loses on Adult DP. Under a stepped schedule\n7: ($\\tau{=}100$ for $\\alpha\\le 0.3$, $\\tau{=}1$ for $\\alpha{=}0.4$)\n8: DRO loses on Adult DP almost everywhere; under a fixed $\\tau{=}1$\n9: schedule DRO wins on Adult DP at every $\\alpha$ and the gap widens\n10: monotonically. This is consistent with the theory: $\\tau{=}100$\n11: sharpens the predictions toward $0$/$1$ and so makes the inner\n12: re-weighting concentrate weights on a few ``worst'' samples,\n13: driving $\\lambda_{\\mathrm{DP}}$ to its clamp and causing the\n14: $\\lambda$-runaway the earlier ``adversarial feedback loop''\n15: discussion was observing. At $\\tau{=}1$ the soft predictions\n16: distribute weight smoothly and $\\lambda$ stays bounded, so the\n17: re-weighting helps rather than hurts.\n18: \n19: \\subsection{Adversarial vs.\\ Random Corruption}\n20: The empirical comparison (\\texttt{results/random\\_vs\\_adversarial\\_new.json})\n21: confirms that adversarial PGD raises DP $12$--$40\\times$ more than\n22: random label noise at matched $\\alpha$ on Adult, and $2$--$22\\times$\n23: on Credit. This rules out the ``attack is too weak''\n24: counter-explanation for the Adult low-$\\alpha$ cells.\n25: \n26: \\subsection{Mechanism (old ``feedback loop'')}\n27: The earlier ``adversarial feedback loop'' account of Adult\n28: $\\alpha\\ge 0.3$ (DRO collapsing to constant predictions) is no\n29: longer the right diagnosis under $\\tau{=}1$. We do still see lower\n30: accuracy at $\\alpha{=}0.4$ ($\\approx 0.55$ for both Naive and DRO\n31: on Adult under DP attack), but DP and accuracy are now both\n32: controlled rather than trading against each other.\n33: \n34: \\subsection{Empirical Radii (Q5)}\n35: The TV-radius formula\n36: $\\rho_{\\mathrm{DP},j}=\\alpha/((1-\\alpha)\\pi_j+\\alpha)$ and the\n37: bias-corrected $\\hat\\pi_{j,\\mathrm{clean}}=(\\hat\\pi_j-\\alpha)/(1-2\\alpha)$\n38: are empirical, not theoretical. Under our coordinated (70\\%-minority)\n39: attack structure they can be tightened by estimating $\\pi_{\\mathrm{clean}}$\n40: from the observed post-attack group proportions directly. We\n41: implement this as \\texttt{radii\\_mode='empirical'} in\n42: \\texttt{src/training/dro\\_fair.py} (default stays 'uniform'). This\n43: is in line with Kuldeep's Q5 (\"if the attack is known then we can\n44: use this approximation according to the attack\") and does not claim\n45: the paper is wrong.\n46: \n47: \\subsection{Image data (UTKFace) --- pending GPU access}\n48: The earlier \"DRO inverts on ResNet18 features\" claim from prior\n49: versions of this paper was based on tau=100-stepped results and is\n50: withdrawn. We have no tau=1 UTKFace results yet because the\n51: flair2 GPU access is unresolved. See \\S\\ref{sec:results-utkface}.\n52: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt,a4paper]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage{amsmath,amssymb,amsfonts}\n5: \\usepackage{graphicx}\n6: \\usepackage{booktabs}\n7: \\usepackage{multirow}\n8: \\usepackage{caption}\n9: \\usepackage{subcaption}\n10: \\usepackage{xcolor}\n11: \\usepackage[hidelinks]{hyperref}\n12: \\usepackage{float}\n13: \\usepackage{natbib}\n14: \\usepackage{algorithm}\n15: \\usepackage{algpseudocode}\n16: \\usepackage{pgfplots}\n17: \\pgfplotsset{compat=1.18}\n18: \n19: \\title{Adversarial Fairness Attacks on Distributionally Robust Fair ML}\n20: \\author{Srujan Sai \\\\\\nIndian Institute of Technology Gandhinagar \\\\\\n\\texttt{srujan.sai@iitgn.ac.in}}\n21: \\date{May 2026}\n22: \n23: \\begin{document}\n24: \\maketitle\n25: \n26: \\begin{abstract}\n27: We introduce \\textit{FairnessTargetedPGD}, a gradient-based adversarial attack that explicitly targets fairness metrics---Demographic Parity (DP) and Individual Fairness (IF)---and evaluate the robustness of DRO-FAIR under these attacks. Unlike prior work that tests only random label noise, our attacks compute the exact gradient of the fairness metric with respect to each training label and flip the optimal subset to maximize unfairness. On Adult, fixing the prediction temperature at $\\tau=1$ across all corruption levels $\\alpha$ makes DRO-FAIR beat Naive-FAIR on DP at every $\\alpha$ under the DP-targeted and combined attacks, with the advantage growing in $\\alpha$ and accuracy equal-or-slightly-better. The earlier ``DRO is fragile / inverts on Adult'' finding was a high-temperature artifact (stepped $\\tau{=}100$ schedule for $\\alpha\\le 0.3$); switching to fixed $\\tau{=}1$ inverts that conclusion. Adversarial PGD raises DP by $12$--$40\\times$ more than random label noise at matched $\\alpha$ on Adult. The IF attack is insensitive to the $k$ of the k-NN graph ($k \\in \\{5,10,15\\}$). The UTKFace experiment is blocked on GPU access and we therefore withdraw the earlier ``DRO inverts on image features'' claim from prior versions of this paper.\n28: \\end{abstract}\n29: \n30: \\section{Introduction}\n31: \\label{sec:intro}\n32: \\input{sections/introduction}\n33: \n34: \\section{Attack Design}\n35: \\label{sec:attack}\n36: \\input{sections/attack_design}\n37: \n38: \\section{Experimental Setup}\n39: \\label{sec:setup}\n40: \\input{sections/experimental_setup}\n41: \n42: \\section{Results}\n43: \\label{sec:results}\n44: \\input{sections/results}\n45: \n46: \\section{Discussion}\n47: \\label{sec:discussion}\n48: \\input{sections/discussion}\n49: \n50: \\section{Related Work}\n51: \\label{sec:related}\n52: \\input{sections/related_work}\n53: \n54: \\section{Conclusion}\n55: \\label{sec:conclusion}\n56: \\input{sections/conclusion}\n57: \n58: \\bibliographystyle{plainnat}\n59: \\bibliography{references}\n60: \n61: \\end{document}\n62: \n```\n\nCompile log (tail):\n```\nt/fonts/type1/public/amsfonts/cm/cmsy7.pfb>\nOutput written on main.pdf (6 pages, 427359 bytes).\nPDF statistics:\n 212 PDF objects out of 1000 (max. 8388607)\n 148 compressed objects within 2 object streams\n 37 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\author{Srujan Sai \\\\\\nIndian Institute of Technology Gandhinagar \\\\\\n\\texttt{srujan.sai@iitgn.ac.in}}\n=======\n\\author{Srujan Sai \\\\ Indian Institute of Technology Gandhinagar \\\\ \\texttt{srujan.sai@iitgn.ac.in}}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage{xcolor}\n=======\n\\usepackage[table]{xcolor}\n\\definecolor{hdrblue}{RGB}{60,90,160}\n\\definecolor{wingreen}{RGB}{180,240,180}\n\\definecolor{lossred}{RGB}{255,180,180}\n\\definecolor{dro}{RGB}{0,128,0}\n\\definecolor{naive}{RGB}{200,0,0}\n>>>>>>> REPLACE\n", "id": "github_Srujan0798__DRO-FairML__d4332d6", "doc": "github_multi/Srujan0798__DRO-FairML__d4332d6", "mutation": "real", "source": "github", "repo": "Srujan0798/DRO-FairML", "sha": "d4332d6c50d7aa7fa629f964f83081108bc6d5ed", "parent_sha": "def9f23080601646eb38ee3f291a47caff7d67d1", "license": "MIT", "url": "https://github.com/Srujan0798/DRO-FairML/commit/d4332d6c50d7aa7fa629f964f83081108bc6d5ed", "changed_files": ["main.tex"], "original_root": "main.tex", "n_files": 12, "engine": "pdflatex", "error_category": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 25: Undefined control sequence.\n- line 34: Undefined control sequence.\n- line 37: Undefined control sequence.\n- line 44: Undefined control sequence.\n- line 45: Undefined control sequence.\n- line 46: Undefined control sequence.\n- line 48: Undefined control sequence.\n- line 49: Undefined control sequence.\n- line 50: Undefined control sequence.\n- line 52: Undefined control sequence.\n- line 53: Undefined control sequence.\n- line 54: Undefined control sequence.\n\nProject files:\n- auto_generated/key_findings.tex\n- auto_generated/tabular_results.tex\n- auto_generated/wilcoxon.tex\n- main.tex\n- references.bib\n- sections/attack_design.tex\n- sections/conclusion.tex\n- sections/discussion.tex\n- sections/experimental_setup.tex\n- sections/introduction.tex\n- sections/related_work.tex\n- sections/results.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt,a4paper]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage{amsmath,amssymb,amsfonts}\n5: \\usepackage{graphicx}\n6: \\usepackage{booktabs}\n7: \\usepackage{multirow}\n8: \\usepackage{caption}\n9: \\usepackage{subcaption}\n10: \\usepackage{xcolor}\n11: \\usepackage[hidelinks]{hyperref}\n12: \\usepackage{float}\n13: \\usepackage{natbib}\n14: \\usepackage{algorithm}\n15: \\usepackage{algpseudocode}\n16: \\usepackage{pgfplots}\n17: \\pgfplotsset{compat=1.18}\n18: \n19: \\title{Adversarial Fairness Attacks on Distributionally Robust Fair ML}\n20: \\author{Srujan Sai \\\\\\nIndian Institute of Technology Gandhinagar \\\\\\n\\texttt{srujan.sai@iitgn.ac.in}}\n21: \\date{May 2026}\n22: \n23: \\begin{document}\n24: \\maketitle\n25: \n26: \\begin{abstract}\n27: We introduce \\textit{FairnessTargetedPGD}, a gradient-based adversarial attack that explicitly targets fairness metrics---Demographic Parity (DP) and Individual Fairness (IF)---and evaluate the robustness of DRO-FAIR under these attacks. Unlike prior work that tests only random label noise, our attacks compute the exact gradient of the fairness metric with respect to each training label and flip the optimal subset to maximize unfairness. On Adult, fixing the prediction temperature at $\\tau=1$ across all corruption levels $\\alpha$ makes DRO-FAIR beat Naive-FAIR on DP at every $\\alpha$ under the DP-targeted and combined attacks, with the advantage growing in $\\alpha$ and accuracy equal-or-slightly-better. The earlier ``DRO is fragile / inverts on Adult'' finding was a high-temperature artifact (stepped $\\tau{=}100$ schedule for $\\alpha\\le 0.3$); switching to fixed $\\tau{=}1$ inverts that conclusion. Adversarial PGD raises DP by $12$--$40\\times$ more than random label noise at matched $\\alpha$ on Adult. The IF attack is insensitive to the $k$ of the k-NN graph ($k \\in \\{5,10,15\\}$). The UTKFace experiment is blocked on GPU access and we therefore withdraw the earlier ``DRO inverts on image features'' claim from prior versions of this paper.\n28: \\end{abstract}\n29: \n30: \\section{Introduction}\n31: \\label{sec:intro}\n32: \\input{sections/introduction}\n33: \n34: \\section{Attack Design}\n35: \\label{sec:attack}\n36: \\input{sections/attack_design}\n37: \n38: \\section{Experimental Setup}\n39: \\label{sec:setup}\n40: \\input{sections/experimental_setup}\n41: \n42: \\section{Results}\n43: \\label{sec:results}\n44: \\input{sections/results}\n45: \n46: \\section{Discussion}\n47: \\label{sec:discussion}\n48: \\input{sections/discussion}\n49: \n50: \\section{Related Work}\n51: \\label{sec:related}\n52: \\input{sections/related_work}\n53: \n54: \\section{Conclusion}\n55: \\label{sec:conclusion}\n56: \\input{sections/conclusion}\n57: \n58: \\bibliographystyle{plainnat}\n59: \\bibliography{references}\n60: \n61: \\end{document}\n62: \n```\n\nCompile log (tail):\n```\nt/fonts/type1/public/amsfonts/cm/cmsy7.pfb>\nOutput written on main.pdf (6 pages, 427359 bytes).\nPDF statistics:\n 212 PDF objects out of 1000 (max. 8388607)\n 148 compressed objects within 2 object streams\n 37 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/Srujan0798/DRO-FairML"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\subsection{Aeroponics}", "replace": "\n\\newpage\n\n\\subsection{Aeroponics}", "type": "real"}, {"file": "main.tex", "search": " \\item Nozzle atomizes water to $\\approx$50 micron droplets\n \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n\\end{itemize}\n\n\\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.", "replace": " \\item Nozzle atomizes water to $\\approx$50 micron droplets\n \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n\n\\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 254, "text": "LaTeX Error: \\begin{itemize} on input line 161 ended by \\end{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": "filecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 24A8A89490EA77664851868A8477D881;1902.\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 161 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 19054 strings out of 467099\n 322446 string characters out of 5408265\n 761705 words of memory out of 5000000\n 47949 multiletter control sequences out of 15000+600000\n 692181 words of font info for 158 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,12n,117p,1001b,702s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (10 pages, 1007946 bytes).\nPDF statistics:\n 112 PDF objects out of 1000 (max. 8388607)\n 86 compressed objects within 1 object stream\n 33 named destinations out of 1000 (max. 500000)\n 32779 words of extra memory for PDF output out of 35830 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 254: LaTeX Error: \\begin{itemize} on input line 161 ended by \\end{document}.\n\nProject files:\n- images/blackbox.png\n- images/features.png\n- main.tex\n- references.bib\n- report.cls\n\nOther project files (edit them with ):\n\n`references.bib` (full file, line-numbered):\n```\n1: \n```\n\n`report.cls` (head and lines matching the log, line-numbered):\n```\n...\n4: \n5: \\NeedsTeXFormat{LaTeX2e}\n6: \\ProvidesClass{report}[2021/02/19 Gijs's homework template]\n7: \n...\n9: \\newif\\if@altquants\n10: \\newif\\if@localnums \\@localnumstrue\n11: \\newif\\if@narrowmargins \\@narrowmarginstrue\n12: \\newif\\if@officialeuro\n13: \n14: \\DeclareOption{altquants}{\\@altquantstrue} % while https://github.com/alerque/libertinus/issues/346 remains open\n15: \\DeclareOption{globalnums}{\\@localnumsfalse}\n16: \\DeclareOption{officialeuro}{\\@officialeurotrue}\n17: \\DeclareOption{widemargins}{\\@narrowmarginsfalse}\n18: \n19: \\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{article}}\n20: \\ProcessOptions\\relax\n21: \n22: \\LoadClass[12pt, letterpaper]{article}\n23: \n...\n28: \\RequirePackage[extrasp=0pt, mono, scale=.94, varqu]{inconsolata}\n29: \n...\n31: \\RequirePackage[mono=false]{libertinus-type1}\n32: \n...\n34: \\RequirePackage[lcgreekalpha]{libertinust1math}\n35: \n...\n37: \\RequirePackage[T1]{fontenc}\n38: \\RequirePackage[utf8]{inputenc}\n39: \n...\n41: \\RequirePackage[american]{babel}\n42: \n...\n110: \n111: % disables numbering for exercises, for both actual headers and in TOC\n112: \\def\\l@exercise#1#2{\\begingroup\\let\\numberline\\@gobble\\l@section{#1}{#2}\\endgroup} % https://tex.stackexchange.com/a/62117\n113: \\def\\@nonumsexercise{}\n114: \\def\\@seccntformat#1{% http://www.texfaq.org/FAQ-seccntfmt\n...\n127: \\newcommand*{\\@exercise}[1][\\@nil]{% https://tex.stackexchange.com/a/217763\n128: \\def\\@arg{#1}%\n129: \\begingroup\\edef\\x{\\endgroup% expands exercise counter for \\nameref: https://tex.stackexchange.com/a/569405\n130: \\noexpand\\@exercisesection{%\n131: \\exercisename{} % note: space\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{report}\n2: \\usepackage{setspace} % Setting line spacing\n3: \\usepackage{ulem} % Underline\n4: \\usepackage{caption} % Captioning figures\n5: \\usepackage{subcaption} % Subfigures\n6: \\usepackage{geometry} % Page layout\n7: \\usepackage{multicol} % Columned pages\n8: \\usepackage{array,etoolbox}\n9: \\usepackage{fancyhdr}\n10: \\usepackage{enumitem}\n11: \\usepackage[toc,page]{appendix}\n12: \n13: % Page layout (margins, size, line spacing)\n14: \\geometry{letterpaper, left=1in, right=1in, bottom=1in, top=1in}\n15: \\setstretch{1.5}\n16: \n17: % Headers\n18: \\pagestyle{fancy}\n19: \\lhead{PeaPod - Design Proposal}\n20: \\rhead{UTAG}\n21: \n22: % Metric counter, referencing commands\n23: \\newcounter{metricnumber}\n24: \\setcounter{metricnumber}{1}\n25: \\newcommand{\\metricrow}{M\\arabic{metricnumber}}\n26: \\newcommand{\\mlabel}[1]{\\addtocounter{metricnumber}{-1}\\refstepcounter{metricnumber}\\label{#1}\\addtocounter{metricnumber}{1}}\n27: \\newcommand{\\mref}[1]{M\\ref{#1}}\n28: \n29: \\begin{document}\n30: \n31: \\begin{titlepage}\n32: \\begin{center}\n33: \\vspace*{1.2cm}\n34: \n35: \\textbf{\\large{PeaPod - Design Proposal}}\n36: \n37: \\vspace{0.5cm}\n38: \n39: Outlining a Proposal to the PeaPod Design Brief\n40: \n41: \\vfill\n42: \n43: Jayden Lefebvre - Lead Engineer\\\\\\small{jayden.lefebvre@mail.utoronto.ca}\\\\\n44: \\vspace{1cm}\n45: Nathan Chareunsouk, Navin Vanderwert, Chris Lansdale - Design Engineers\n46: \n47: \\vspace{2.5cm}\n48: \n49: Revision 0.2\\\\\n50: University of Toronto Agritech\\\\\n51: June 4th, 2021\n52: \n53: \\end{center}\n54: \\end{titlepage}\n55: \n56: \\thispagestyle{plain}\n57: \n58: \\tableofcontents\n59: \\newpage\n60: \n61: \\section{Introduction}\n62: \\label{sec:intro}\n63: \n64: \\subsection{Purpose}\n65: \\label{sec:purpose}\n66: \n67: The purpose of this document is to outline the fuction and features of a proposal to the PeaPod Design Brief.\n68: \n69: It accomplishes this by answering the following questions on a recursively-scoping basis:\n70: \\begin{enumerate}\n71: \\item \\textbf{What} is the design? What does it accomplish/what is its function? \n72: \\item \\textbf{How} does it accomplish this? What are its features? \n73: \\item \\textbf{Why} that functionality? Why that way?\n74: \\end{enumerate}\n75: \n76: \\newpage\n77: \n78: \\section{Design}\n79: \n80: Functions of the design are derived from the input and output requirements.\n81: \n82: \\begin{figure}[h]\n83: \\centering\n84: \\includegraphics[width=15cm]{images/blackbox.png}\n85: \\hfill\n86: \\caption{\"Black box\" input-output model of PeaPod.}\n87: \\end{figure}\n88: \n89: Features of the design are developed to meet the function, and are derived from the opportunity statement:\n90: \n91: PeaPod is \"an \\uline{automated} and \\uline{isolated} \\uline{aeroponic} crop growth system, able to generate any \\uline{growth environment} from a combination of independent \\uline{environment parameters}, with both environment and crop growth \\uline{data collection}\".\n92: \n93: \\begin{figure}[h]\n94: \\centering\n95: \\includegraphics[width=12cm]{images/features.png}\n96: \\hfill\n97: \\caption{Features and feature types of PeaPod.}\n98: \\end{figure}\n99: \n100: \\newpage\n101: \n102: \\subsection{Automation}\n103: \\label{sec:automation}\n104: \n105: \n106: \\textbf{What}: Performing growth-, maintenance-, and data-related tasks autonomously on the basis of both schedule and necessity.\n107: \n108: \\textbf{How}:\n109: \\begin{itemize}\n110: \\item Schedule:\n111: \\begin{itemize}\n112: \\item User inputs time/action pairs;\n113: \\item E.g. Water at 08:00, Turn light to setting X at 14:00;\n114: \\item \\textit{Bonus:} Can notify user if action's resource is missing (i.e. water tank low)\n115: \\end{itemize}\n116: \\item Necessity:\n117: \\begin{itemize}\n118: \\item \"Sense, Plan, Act\" robotics/control model:\n119: \\begin{enumerate}\n120: \\item \\textit{Senses} current conditions;\n121: \\item \\textit{Plans} a path to desired condition;\n122: \\item \\textit{Acts} to change current condition to desired condition;\n123: \\end{enumerate}\n124: \\end{itemize}\n125: \\end{itemize}\n126: \\textbf{Why}: Increased accuracy/precision over human interference, minimize human hours spent.\n127: \n128: \\subsection{Isolation/Insulation and Housing}\n129: \\label{sec:isolationinsulation}\n130: \n131: \\textbf{What}: Isolates growth environment from exterior environment, provides structural integrity and mounting points.\n132: \n133: \\textbf{How}: Cube exoskeleton (aluminum extrusion) holds solid (acrylic/foam/corrugated board) internally-reflective (mylar) panels in place and aids in mounting plant growth platforms, lights, etc.\n134: \\begin{itemize}\n135: \\item Isolation:\n136: \\begin{itemize}\n137: \\item Heat - Held by...\n138: \\item Light - Blocked by...\n139: \\item Moisture - Retained by...\n140: \\end{itemize}\n141: \\item Mounting:\n142: \\begin{itemize}\n143: \\item Growth trays - Mounted to rails attached to...\n144: \\item Lights - Held by...\n145: \\item Nozzle - Attached to/stabilized by...\n146: \\item Sensors - Mounted to...\n147: \\item Isolation material - Holds the rest of the things by...\n148: \\end{itemize}\n149: \\end{itemize}\n150: \n151: \\textbf{Why}: Increases thermal and light efficiency. Isolation increases safety against cross-contamination, pathogens, harmful substances. Simple and strong construction with dedicated mounting channels.\n152: \n153: \\newpage\n154: \n155: \\subsection{Aeroponics}\n156: \\label{sec:aeroponics}\n157: \n158: \\textbf{What}: Medium-free growing method that uses nutrients dissolved within atomized water.\n159: \n160: \\textbf{How}: High-pressure nozzles deliver atomized nutrient solution to plant roots. Uses parallel distribution topology.\n161: \\begin{itemize}\n162: \\item Pump fills tank with water that has nutrients dissolved within\n163: \\item Tank uses an air bladder to hold water at desired PSI\n164: \\item Switch checks line pressure and activates/deactivates pump to maintain PSI\n165: \\item Solenoid ball valve feeds water to nozzle\n166: \\item Nozzle atomizes water to $\\approx$50 micron droplets\n167: \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n168: \n169: \\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.\n170: \n171: \\subsection{Environment Control}\n172: \\label{sec:environment}\n173: \n174: The environment control feature can be broken up into \\textbf{control systems} (\\ref{sec:airtemp}-\\ref{sec:dehum}; sometimes in two parts) and \\textbf{set systems} (\\ref{sec:watertemp}-\\ref{sec:lighting}).\n175: \n176: \\subsubsection{Air Temperature}\n177: \\label{sec:airtemp}\n178: \n179: \\textbf{What}: Maintaining desired air temperature within the enclosure.\n180: \n181: \\textbf{How}: Thermoelectric heating/cooling system (peltier tiles w/ polarity switch, 'dimming' current control, PID) on a heat sink w/ fan, feedback from distributed temp sensors\n182: \n183: \\textbf{Why}: TECs have better space and energy efficiency, less complexity (no liquids, pressurized fluids, etc.), better control vs other methods. PID provides best control.\n184: \n185: \\subsubsection{Air Humidification}\n186: \\label{sec:airhum}\n187: \n188: \\textbf{What}: Adding water vapour to air.\n189: \n190: \\textbf{How}: Ultrasonic nebulizer (piezo disc w/ custom driver circuit), RO water\n191: \n192: \\textbf{Why}: Piezo for droplet size, commonly used; RO for purity of water vapour\n193: \n194: \\newpage\n195: \n196: \\subsubsection{Air Dehumidification}\n197: \\label{sec:dehum}\n198: \n199: \\textbf{What}: Absorbs water vapour from the air.\n200: \n201: \\textbf{How}: Silica gel bead cartridges with fans/valves to control airflow across.\n202: \n203: \\textbf{Why}: Non-toxic, safe, cheap, effective. Color-changing indication at saturation, easily reset by baking and recapturing water.\n204: \n205: \\subsubsection{Solution Temperature}\n206: \\label{sec:watertemp}\n207: \n208: \\textbf{What}: Maintaining desired water temperature within the water store.\n209: \n210: \\textbf{How}: Same as \\ref{sec:airtemp}; on a water block\n211: \n212: \\textbf{Why}: Same as \\ref{sec:airtemp}\n213: \n214: \\subsubsection{Solution Nutrients}\n215: \\label{sec:nutrients}\n216: \n217: \\textbf{What}: Precisely dosing the correct amount of various nutrients (K${}^+$, NO${}_3^-$, etc.) to the water system at setup/water addition.\n218: \n219: % TODO: List of nutrients?\n220: \n221: \\textbf{How}: Syringe-like dosage via servo motor to set ppm based on fill volume.\n222: \n223: \\textbf{Why}: Syringe dosage is precise, easy to refill.\n224: \n225: \\subsubsection{Solution pH}\n226: \\label{sec:ph}\n227: \n228: \\textbf{What}: Precisely adds pH up/down solutions to set the solution pH at setup/water addition.\n229: \n230: \\textbf{How}: Same as \\ref{sec:nutrients}.\n231: \n232: \\textbf{Why}: Same as \\ref{sec:nutrients}.\n233: \n234: \\newpage\n235: \n236: \\subsubsection{Lighting}\n237: \\label{sec:lighting}\n238: \n239: \\textbf{What}: Wide spectrum precision LED lighting targeting PAR.\n240: \n241: \\textbf{How}: N LED series/colors, N controlled-current PWM drivers, M LEDs per series = NxM LEDs. Custom LED boards wired in series, one power board per tray, w/ diffusion.\n242: \n243: \\textbf{Why}: LED > every other type in every way, PWM easy protocol, CC because they’re LEDs.\n244: \n245: % \\textbf{What}: \n246: % \\textbf{How}: \n247: % \\textbf{Why}:\n248: \n249: % \\newpage\n250: \n251: % References\n252: % \\bibliographystyle{IEEEtran}\n253: % \\bibliography{references}\n254: \\end{document}\n```\n\nCompile log (tail):\n```\nfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 24A8A89490EA77664851868A8477D881;1902.\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 161 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 19054 strings out of 467099\n 322446 string characters out of 5408265\n 761705 words of memory out of 5000000\n 47949 multiletter control sequences out of 15000+600000\n 692181 words of font info for 158 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,12n,117p,1001b,702s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (10 pages, 1007946 bytes).\nPDF statistics:\n 112 PDF objects out of 1000 (max. 8388607)\n 86 compressed objects within 1 object stream\n 33 named destinations out of 1000 (max. 500000)\n 32779 words of extra memory for PDF output out of 35830 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\item Nozzle atomizes water to $\\approx$50 micron droplets\n \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n\n\\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.\n=======\n \\item Nozzle atomizes water to $\\approx$50 micron droplets\n \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n\\end{itemize}\n\n\\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\newpage\n\n\\subsection{Aeroponics}\n=======\n\n\\subsection{Aeroponics}\n>>>>>>> REPLACE\n", "id": "github_chang-fio__agritech-PeaPod__5e892da", "doc": "github_multi/chang-fio__agritech-PeaPod__5e892da", "mutation": "real", "source": "github", "repo": "chang-fio/agritech-PeaPod", "sha": "5e892da841bd0ea85a0980163081c8dc88bde5b7", "parent_sha": "c6a65b483120c04f170606e079cb454ab7d52307", "license": "MIT", "url": "https://github.com/chang-fio/agritech-PeaPod/commit/5e892da841bd0ea85a0980163081c8dc88bde5b7", "changed_files": ["DesignProposal.tex"], "original_root": "DesignProposal.tex", "n_files": 3, "engine": "pdflatex", "error_category": "LaTeX Error: \\CS{X} on input line N ended by \\CS{X}.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 254: LaTeX Error: \\begin{itemize} on input line 161 ended by \\end{document}.\n\nProject files:\n- images/blackbox.png\n- images/features.png\n- main.tex\n- references.bib\n- report.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{report}\n2: \\usepackage{setspace} % Setting line spacing\n3: \\usepackage{ulem} % Underline\n4: \\usepackage{caption} % Captioning figures\n5: \\usepackage{subcaption} % Subfigures\n6: \\usepackage{geometry} % Page layout\n7: \\usepackage{multicol} % Columned pages\n8: \\usepackage{array,etoolbox}\n9: \\usepackage{fancyhdr}\n10: \\usepackage{enumitem}\n11: \\usepackage[toc,page]{appendix}\n12: \n13: % Page layout (margins, size, line spacing)\n14: \\geometry{letterpaper, left=1in, right=1in, bottom=1in, top=1in}\n15: \\setstretch{1.5}\n16: \n17: % Headers\n18: \\pagestyle{fancy}\n19: \\lhead{PeaPod - Design Proposal}\n20: \\rhead{UTAG}\n21: \n22: % Metric counter, referencing commands\n23: \\newcounter{metricnumber}\n24: \\setcounter{metricnumber}{1}\n25: \\newcommand{\\metricrow}{M\\arabic{metricnumber}}\n26: \\newcommand{\\mlabel}[1]{\\addtocounter{metricnumber}{-1}\\refstepcounter{metricnumber}\\label{#1}\\addtocounter{metricnumber}{1}}\n27: \\newcommand{\\mref}[1]{M\\ref{#1}}\n28: \n29: \\begin{document}\n30: \n31: \\begin{titlepage}\n32: \\begin{center}\n33: \\vspace*{1.2cm}\n34: \n35: \\textbf{\\large{PeaPod - Design Proposal}}\n36: \n37: \\vspace{0.5cm}\n38: \n39: Outlining a Proposal to the PeaPod Design Brief\n40: \n41: \\vfill\n42: \n43: Jayden Lefebvre - Lead Engineer\\\\\\small{jayden.lefebvre@mail.utoronto.ca}\\\\\n44: \\vspace{1cm}\n45: Nathan Chareunsouk, Navin Vanderwert, Chris Lansdale - Design Engineers\n46: \n47: \\vspace{2.5cm}\n48: \n49: Revision 0.2\\\\\n50: University of Toronto Agritech\\\\\n51: June 4th, 2021\n52: \n53: \\end{center}\n54: \\end{titlepage}\n55: \n56: \\thispagestyle{plain}\n57: \n58: \\tableofcontents\n59: \\newpage\n60: \n61: \\section{Introduction}\n62: \\label{sec:intro}\n63: \n64: \\subsection{Purpose}\n65: \\label{sec:purpose}\n66: \n67: The purpose of this document is to outline the fuction and features of a proposal to the PeaPod Design Brief.\n68: \n69: It accomplishes this by answering the following questions on a recursively-scoping basis:\n70: \\begin{enumerate}\n71: \\item \\textbf{What} is the design? What does it accomplish/what is its function? \n72: \\item \\textbf{How} does it accomplish this? What are its features? \n73: \\item \\textbf{Why} that functionality? Why that way?\n74: \\end{enumerate}\n75: \n76: \\newpage\n77: \n78: \\section{Design}\n79: \n80: Functions of the design are derived from the input and output requirements.\n81: \n82: \\begin{figure}[h]\n83: \\centering\n84: \\includegraphics[width=15cm]{images/blackbox.png}\n85: \\hfill\n86: \\caption{\"Black box\" input-output model of PeaPod.}\n87: \\end{figure}\n88: \n89: Features of the design are developed to meet the function, and are derived from the opportunity statement:\n90: \n91: PeaPod is \"an \\uline{automated} and \\uline{isolated} \\uline{aeroponic} crop growth system, able to generate any \\uline{growth environment} from a combination of independent \\uline{environment parameters}, with both environment and crop growth \\uline{data collection}\".\n92: \n93: \\begin{figure}[h]\n94: \\centering\n95: \\includegraphics[width=12cm]{images/features.png}\n96: \\hfill\n97: \\caption{Features and feature types of PeaPod.}\n98: \\end{figure}\n99: \n100: \\newpage\n101: \n102: \\subsection{Automation}\n103: \\label{sec:automation}\n104: \n105: \n106: \\textbf{What}: Performing growth-, maintenance-, and data-related tasks autonomously on the basis of both schedule and necessity.\n107: \n108: \\textbf{How}:\n109: \\begin{itemize}\n110: \\item Schedule:\n111: \\begin{itemize}\n112: \\item User inputs time/action pairs;\n113: \\item E.g. Water at 08:00, Turn light to setting X at 14:00;\n114: \\item \\textit{Bonus:} Can notify user if action's resource is missing (i.e. water tank low)\n115: \\end{itemize}\n116: \\item Necessity:\n117: \\begin{itemize}\n118: \\item \"Sense, Plan, Act\" robotics/control model:\n119: \\begin{enumerate}\n120: \\item \\textit{Senses} current conditions;\n121: \\item \\textit{Plans} a path to desired condition;\n122: \\item \\textit{Acts} to change current condition to desired condition;\n123: \\end{enumerate}\n124: \\end{itemize}\n125: \\end{itemize}\n126: \\textbf{Why}: Increased accuracy/precision over human interference, minimize human hours spent.\n127: \n128: \\subsection{Isolation/Insulation and Housing}\n129: \\label{sec:isolationinsulation}\n130: \n131: \\textbf{What}: Isolates growth environment from exterior environment, provides structural integrity and mounting points.\n132: \n133: \\textbf{How}: Cube exoskeleton (aluminum extrusion) holds solid (acrylic/foam/corrugated board) internally-reflective (mylar) panels in place and aids in mounting plant growth platforms, lights, etc.\n134: \\begin{itemize}\n135: \\item Isolation:\n136: \\begin{itemize}\n137: \\item Heat - Held by...\n138: \\item Light - Blocked by...\n139: \\item Moisture - Retained by...\n140: \\end{itemize}\n141: \\item Mounting:\n142: \\begin{itemize}\n143: \\item Growth trays - Mounted to rails attached to...\n144: \\item Lights - Held by...\n145: \\item Nozzle - Attached to/stabilized by...\n146: \\item Sensors - Mounted to...\n147: \\item Isolation material - Holds the rest of the things by...\n148: \\end{itemize}\n149: \\end{itemize}\n150: \n151: \\textbf{Why}: Increases thermal and light efficiency. Isolation increases safety against cross-contamination, pathogens, harmful substances. Simple and strong construction with dedicated mounting channels.\n152: \n153: \\newpage\n154: \n155: \\subsection{Aeroponics}\n156: \\label{sec:aeroponics}\n157: \n158: \\textbf{What}: Medium-free growing method that uses nutrients dissolved within atomized water.\n159: \n160: \\textbf{How}: High-pressure nozzles deliver atomized nutrient solution to plant roots. Uses parallel distribution topology.\n161: \\begin{itemize}\n162: \\item Pump fills tank with water that has nutrients dissolved within\n163: \\item Tank uses an air bladder to hold water at desired PSI\n164: \\item Switch checks line pressure and activates/deactivates pump to maintain PSI\n165: \\item Solenoid ball valve feeds water to nozzle\n166: \\item Nozzle atomizes water to $\\approx$50 micron droplets\n167: \\item T-quick connects with solenoid ball valves at every unit height feed individual trays\n168: \n169: \\textbf{Why}: No water parameter feedback, 98\\% more water efficient, minimizes pathogens and waste water.\n170: \n171: \\subsection{Environment Control}\n172: \\label{sec:environment}\n173: \n174: The environment control feature can be broken up into \\textbf{control systems} (\\ref{sec:airtemp}-\\ref{sec:dehum}; sometimes in two parts) and \\textbf{set systems} (\\ref{sec:watertemp}-\\ref{sec:lighting}).\n175: \n176: \\subsubsection{Air Temperature}\n177: \\label{sec:airtemp}\n178: \n179: \\textbf{What}: Maintaining desired air temperature within the enclosure.\n180: \n181: \\textbf{How}: Thermoelectric heating/cooling system (peltier tiles w/ polarity switch, 'dimming' current control, PID) on a heat sink w/ fan, feedback from distributed temp sensors\n182: \n183: \\textbf{Why}: TECs have better space and energy efficiency, less complexity (no liquids, pressurized fluids, etc.), better control vs other methods. PID provides best control.\n184: \n185: \\subsubsection{Air Humidification}\n186: \\label{sec:airhum}\n187: \n188: \\textbf{What}: Adding water vapour to air.\n189: \n190: \\textbf{How}: Ultrasonic nebulizer (piezo disc w/ custom driver circuit), RO water\n191: \n192: \\textbf{Why}: Piezo for droplet size, commonly used; RO for purity of water vapour\n193: \n194: \\newpage\n195: \n196: \\subsubsection{Air Dehumidification}\n197: \\label{sec:dehum}\n198: \n199: \\textbf{What}: Absorbs water vapour from the air.\n200: \n201: \\textbf{How}: Silica gel bead cartridges with fans/valves to control airflow across.\n202: \n203: \\textbf{Why}: Non-toxic, safe, cheap, effective. Color-changing indication at saturation, easily reset by baking and recapturing water.\n204: \n205: \\subsubsection{Solution Temperature}\n206: \\label{sec:watertemp}\n207: \n208: \\textbf{What}: Maintaining desired water temperature within the water store.\n209: \n210: \\textbf{How}: Same as \\ref{sec:airtemp}; on a water block\n211: \n212: \\textbf{Why}: Same as \\ref{sec:airtemp}\n213: \n214: \\subsubsection{Solution Nutrients}\n215: \\label{sec:nutrients}\n216: \n217: \\textbf{What}: Precisely dosing the correct amount of various nutrients (K${}^+$, NO${}_3^-$, etc.) to the water system at setup/water addition.\n218: \n219: % TODO: List of nutrients?\n220: \n221: \\textbf{How}: Syringe-like dosage via servo motor to set ppm based on fill volume.\n222: \n223: \\textbf{Why}: Syringe dosage is precise, easy to refill.\n224: \n225: \\subsubsection{Solution pH}\n226: \\label{sec:ph}\n227: \n228: \\textbf{What}: Precisely adds pH up/down solutions to set the solution pH at setup/water addition.\n229: \n230: \\textbf{How}: Same as \\ref{sec:nutrients}.\n231: \n232: \\textbf{Why}: Same as \\ref{sec:nutrients}.\n233: \n234: \\newpage\n235: \n236: \\subsubsection{Lighting}\n237: \\label{sec:lighting}\n238: \n239: \\textbf{What}: Wide spectrum precision LED lighting targeting PAR.\n240: \n241: \\textbf{How}: N LED series/colors, N controlled-current PWM drivers, M LEDs per series = NxM LEDs. Custom LED boards wired in series, one power board per tray, w/ diffusion.\n242: \n243: \\textbf{Why}: LED > every other type in every way, PWM easy protocol, CC because they’re LEDs.\n244: \n245: % \\textbf{What}: \n246: % \\textbf{How}: \n247: % \\textbf{Why}:\n248: \n249: % \\newpage\n250: \n251: % References\n252: % \\bibliographystyle{IEEEtran}\n253: % \\bibliography{references}\n254: \\end{document}\n```\n\nCompile log (tail):\n```\nfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 24A8A89490EA77664851868A8477D881;1902.\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 161 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 19054 strings out of 467099\n 322446 string characters out of 5408265\n 761705 words of memory out of 5000000\n 47949 multiletter control sequences out of 15000+600000\n 692181 words of font info for 158 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,12n,117p,1001b,702s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (10 pages, 1007946 bytes).\nPDF statistics:\n 112 PDF objects out of 1000 (max. 8388607)\n 86 compressed objects within 1 object stream\n 33 named destinations out of 1000 (max. 500000)\n 32779 words of extra memory for PDF output out of 35830 (max. 10000000)\n```", "repo_url": "https://github.com/chang-fio/agritech-PeaPod"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " \\section{Programming}\n \\restorecr\n \\smartdiagram[bubble diagram]{", "replace": " \\section{Programming}\n \\smartdiagram[bubble diagram]{", "type": "real"}, {"file": "main.tex", "search": " } \n\\begin{center}", "replace": " } \n \\par\\vspace{0.3cm}\n\\begin{center}", "type": "real"}, {"file": "main.tex", "search": "\\end{center}\n \\obeycr\n ~", "replace": "\\end{center}\n ~", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 91, "text": "LaTeX Error: There's no line here to end.", "file": "main.tex", "fileLabel": null}, {"line": 92, "text": "LaTeX Error: There's no line here to end.", "file": "main.tex", "fileLabel": null}, {"line": 94, "text": "LaTeX Error: There's no line here to end.", "file": "main.tex", "fileLabel": null}, {"line": 103, "text": "LaTeX Error: There's no line here to end.", "file": "main.tex", "fileLabel": null}], "log_tail": "36--277\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 278--295\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 297--304\n\n []\n\nFile: img/covering.jpg Graphic file (type bmp)\n\n[2] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 35986 strings out of 467745\n 739803 string characters out of 5422257\n 1747798 words of memory out of 5000000\n 64615 multiletter control sequences out of 15000+600000\n 629133 words of font info for 87 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,8n,121p,693b,1011s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (3 pages, 70328 bytes).\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 91: LaTeX Error: There's no line here to end.\n- line 92: LaTeX Error: There's no line here to end.\n- line 94: LaTeX Error: There's no line here to end.\n- line 103: LaTeX Error: There's no line here to end.\n\nProject files:\n- .github/workflows/build-cv.yml\n- .gitignore\n- 1cover_letter_Vorlage.tex\n- 1old_cover_letter_Vorlage.tex\n- LICENSE\n- Lato-Hairline.ttf\n- README.md\n- bibliography.bib\n- collection.sty\n- cover_ku.tex\n- cover_letter_audi.tex\n- cover_letter_microsoft.tex\n- friggeri-cv.cls\n- img/1stars.png\n- img/2stars.png\n- img/3stars.png\n- img/4stars.png\n- img/5stars.png\n- img/covering.jpg\n- img/den.png\n- img/ger.png\n- img/italia.png\n- img/logo.jpg\n- img/logo.png\n- img/maxi1.jpg\n- img/maxi1q.jpg\n- img/maxi2.jpg\n- img/maxi2q.jpg\n- img/maxi3.jpg\n- img/maxi3q.jpg\n- img/pb.jpg\n- img/picture.png\n- img/snow_circle.png\n- img/usa.png\n- main.tex\n- moderncv.cls\n- moderncvcolorgreen.sty\n- moderncvstyleclassic.sty\n- sty/moderncvcolorblack.sty\n- sty/moderncvcolorblue.sty\n- ... (16 more)\n\nOther project files (edit them with ):\n\n`friggeri-cv.cls` (head and lines matching the log, line-numbered):\n```\n...\n5: \\ProvidesClass{friggeri-cv}[2012/04/30 CV class]\n6: \\NeedsTeXFormat{LaTeX2e}\n7: \n8: \\DeclareOption{print}{\\def\\@cv@print{}}\n9: \\DeclareOption*{%\n10: \\PassOptionsToClass{\\CurrentOption}{article}%\n11: }\n12: \\ProcessOptions\\relax\n13: \\LoadClass{article}\n14: \n15: \n...\n19: \n20: \\RequirePackage{xcolor}\n21: \n22: \\definecolor{white}{RGB}{255,255,255}\n23: \n24: \\definecolor{darkgray}{HTML}{333333}\n25: \\definecolor{gray}{HTML}{4D4D4D}\n26: \\definecolor{lightgray}{HTML}{999999}\n27: \\definecolor{green}{HTML}{C2E15F}\n28: \\definecolor{orange}{HTML}{FDA333}\n29: \\definecolor{purple}{HTML}{D3A4F9}\n30: \\definecolor{red}{HTML}{FB4485}\n31: \\definecolor{blue}{HTML}{6CE0F1}\n32: \\definecolor{pblue}{HTML}{3399cc}\n33: \\definecolor{materialpurple}{HTML}{9C27B0}\n34: \\definecolor{materialindigo}{HTML}{3F51B5}\n35: \\definecolor{materialblue}{HTML}{2196F3}\n36: \\definecolor{materialcyan}{HTML}{00BCD4}\n37: \\definecolor{materialteal}{HTML}{009688}\n```\n\n`bibliography.bib` (full file, line-numbered):\n```\n1: % Empty bibliography file (required by biblatex/addbibresource, currently unused in 2cv.tex)\n2: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %!TEX TS-program = xelatex\n2: \\documentclass[]{friggeri-cv}\n3: \\usepackage{afterpage}\n4: \\usepackage{hyperref}\n5: \\usepackage{color}\n6: \\usepackage{xcolor}\n7: \\usepackage{smartdiagram}\n8: \\usepackage{fontspec}\n9: \n10: \\usepackage{metalogo}\n11: \\usepackage[utf8]{inputenc}\n12: \\usepackage{tikz}\n13: \\usetikzlibrary{mindmap,shadows,positioning}\n14: \n15: \n16: \n17: \\hypersetup{\n18: pdftitle={CV-Maximilian Zuleger},\n19: pdfauthor={Maximilian Zuleger},\n20: pdfsubject={cv},\n21: pdfkeywords={cv,maxi,zuleger,software},\n22: colorlinks=false, % no lik border color\n23: allbordercolors=white % white border color for all\n24: }\n25: \\smartdiagramset{\n26: bubble center node font = \\footnotesize,\n27: bubble node font = \\footnotesize,\n28: % specifies the minimum size of the bubble center node\n29: bubble center node size = 0.2cm,\n30: % specifies the minimum size of the bubbles\n31: bubble node size = 0.2cm,\n32: % specifies which is the distance among the bubble center node and the other bubbles\n33: distance center/other bubbles = 0.3cm,\n34: % sets the distance from the text to the border of the bubble center node\n35: distance text center bubble = 0.4cm,\n36: % set center bubble color\n37: bubble center node color = pblue,\n38: % define the list of colors usable in the diagram\n39: set color list = {lightgray, materialcyan, orange, green, materialorange, materialteal, materialamber, materialindigo, materialgreen, materiallime},\n40: % sets the opacity at which the bubbles are shown\n41: bubble fill opacity = 0.6,\n42: % sets the opacity at which the bubble text is shown\n43: bubble text opacity = 0.5,\n44: }\n45: \n46: \\addbibresource{bibliography.bib}\n47: \\RequirePackage{xcolor}\n48: \\definecolor{pblue}{HTML}{0395DE}\n49: \n50: \\begin{document}\n51: \\header{Maximilian~}{Zuleger}\n52: {Software Engineer} \n53: \n54: % Fake text to add separator \n55: %\\fcolorbox{white}{gray}{\\parbox{\\dimexpr\\textwidth-2\\fboxsep-2\\fboxrule}{%\n56: %.....\n57: %}}\n58: \\hspace{5cm}\n59: \\vspace{0.4cm}\n60: % In the aside, each new line forces a line break\n61: \\begin{aside}\n62: %\\includegraphics[scale=0.12]{img/pb.jpg}\n63: \\includegraphics[scale=0.12]{img/maxi2q.jpg}\n64: \\section{Address}\n65: Friedrich-Ebert-Str 18B\n66: 85055 Ingolstadt\n67: ~\n68: \\section{Telephone}\n69: +49 176 63793909\n70: ~\n71: \\section{Mail}\n72: \\href{mailto:kontakt@max-z.de}{\\textbf{kontakt@}max-z.de}\n73: ~\n74: \\section{Web \\& Git}\n75: \\href{https://max-z.de}{max-z.de}\n76: \\href{https://www.linkedin.com/in/maximilian-zuleger-722687129}{LinkedIn}\n77: \\href{https://github.com/maxizu}{github.com/maxizu}\n78: \\href{https://bright.eco}{bright.eco}\n79: \\href{https://maxizu.de}{maxizu.de}\n80: ~\n81: % use \\hspace{} or \\vspace{} to change bubble size, if needed\n82: \\section{Programming}\n83: \\smartdiagram[bubble diagram]{\n84: \\textbf{Java},\n85: \\textbf{C\\#},\n86: \\textbf{Kotlin},\n87: \\textbf{Other},\n88: \\textbf{Web},\n89: \\textbf{Dart}\n90: } \n91: \\par\\vspace{0.3cm}\n92: \\begin{center}\n93: \\section{Personal Skills}\n94: \\vspace{0.35cm}\n95: \\smartdiagram[bubble diagram]{\n96: \\textbf{Loyal},\n97: \\textbf{Efficient},\n98: \\textbf{Realistic},\n99: \\textbf{Accurate},\n100: \\textbf{Flexible},\n101: \\textbf{Calm}\n102: }\n103: \\end{center}\n104: ~\n105: \\end{aside}\n106: ~\n107: ~\n108: \\section{Experience}\n109: \\begin{entrylist}\n110: \\entry\n111: {10/22 - Now}\n112: {Software Engineer}\n113: {amplimind}\n114: {Software Developer, amplimind powered by Audi and Lufthansa Industry \\\\ Solutions, Munich/Germany\\\\}\n115: \\entry\n116: {01/10 - Now}\n117: {Independent Software Developer}\n118: {Mz}\n119: {Software Developer, Website: max-z.de, Ingolstadt/Germany\\\\}\n120: \\entry\n121: {09/18 - 09/22}\n122: {Software Engineer}\n123: {AUDI AG}\n124: {Software Developer at the Audi Software Development Center\\\\}\n125: \\entry\n126: {10/17 - 09/18}\n127: {Software Engineer - E-Mobility}\n128: {AUDI AG}\n129: {Software Engineer and Project Manager for public charging \\\\}\n130: \\entry\n131: {02/17 - 08/17}\n132: {Master Thesis - Electric Car}\n133: {AUDI AG}\n134: {Master thesis about Load Balancing for Charging Stations within Smart City, MQTT and Machine Learning, Ingolstadt/Germany\\\\}\n135: \\entry\n136: {03/16 - 08/17}\n137: {Student Trainee}\n138: {GIGATRONIK AG}\n139: {Software Developer, Machine Learning and Big Data, Ingolstadt/Germany\\\\}\n140: \\entry\n141: {08/15 - 03/16}\n142: {Bachelor Thesis - Neural Networks}\n143: {GIGATRONIK AG}\n144: {Bachelor thesis about neural networks for image recognition in automotive applications, Machine (Deep) Learning, Ingolstadt/Germany\\\\}\n145: \\entry\n146: {06/15 - 10/16}\n147: {Student Trainee}\n148: {Virtual Innovation Forum e.V. - Technische Hochschule Ingolstadt}\n149: {Modelling the fortress of Ingolstadt for the Virtual Innovation Forum at the Technische Hochschule Ingolstadt, Ingolstadt/Germany\\\\}\n150: %\\entry\n151: %{04/15 - 08/15}\n152: %{Student Trainee}\n153: %{GIGATRONIK AG}\n154: %{Automotive Software Engineer, Gigatronik AG, Ingolstadt/Germany\\\\}\n155: \\entry\n156: {09/14 - 03/15}\n157: {Emission Test Laboratory Manager Assistant Intern}\n158: {BMW of North America}\n159: {Software Developer for BMW of North America, Los Angeles/USA\\\\}\n160: %\\entry\n161: % {07/12 - 8/12}\n162: %{Intern}\n163: %{Contabo GmbH}\n164: %{Intern as Web Developer at Contabo GmbH, Munich/Germany\\\\}\n165: %\\entry\n166: %{03/11 - 04/11}\n167: %{Intern}\n168: %{EUC SYD}\n169: %{Electrical engineering and information technology, %internship abroad, Sønderborg/Denmark\\\\}\n170: %\\entry\n171: %{02/11 - 07/11}\n172: %{Intern}\n173: %{FOS Munich}\n174: %{Electrical engineering and information technology, %Workshops FOS/BOS %Munich, Munich/Germany\\\\}\n175: %\\entry\n176: %{09/10 - 02/11}\n177: %{Intern}\n178: %{Siemens AG}\n179: %{Intern as Mechanical Engineer at Siemens, %Munich/Germany\\\\}\n180: %\\entry\n181: %{07/09 - 07/09}\n182: %{Intern}\n183: %{Rohde \\& Schwarz GmbH \\& Co. KG}\n184: %{Intern as a System Administrator, Setting up a server %and managing the IT infrastructure of %Rohde \\& Schwarz, %Munich/Germany\\\\}\n185: \\end{entrylist}\n186: \n187: \\section{Education}\n188: \\begin{entrylist}\n189: \\entry\n190: {2016 - 2017}\n191: {Master's Degree in Computer Science}\n192: {Technische Hochschule Ingolstadt}\n193: {Subject area: Security and Safety, Ingolstadt/Germany\\\\}\n194: \\entry\n195: {2012 - 2016}\n196: {Bachelor's Degree in Computer Science}\n197: {HAW Ingolstadt}\n198: {Optional courses: Math and Automotive Engineering, Ingolstadt/Germany}\n199: \\end{entrylist}\n200: \n201: \\newpage\n202: \n203: \\begin{aside}\n204: ~\n205: ~\n206: \\section{OS Preference}\n207: \\textbf{Windows}\\includegraphics[scale=0.40]{img/5stars.png}\n208: \\textbf{Linux/Unix}\\includegraphics[scale=0.40]{img/4stars.png}\n209: \\textbf{MacOS}\\includegraphics[scale=0.40]{img/4stars.png}\n210: ~\n211: \\section{Languages}\n212: \\textbf{German}\\includegraphics[scale=0.40]{img/5stars.png}\n213: \\textbf{English}\\includegraphics[scale=0.40]{img/4stars.png}\n214: ~\n215: \\section{Places Lived}\n216: ~\n217: \\includegraphics[scale=0.08]{img/ger.png}\n218: Germany (26 years)\n219: ~\n220: \\includegraphics[scale=0.07]{img/usa.png}\n221: United States of America (6 months)\n222: ~\n223: \\includegraphics[scale=0.11]{img/den.png}\n224: Denmark (4 weeks)\n225: ~\n226: \\section{Focus}\n227: ~\n228: \\textbf{Software Developer\\\\}\\includegraphics[scale=0.40]{img/5stars.png}\n229: \\textbf{Extreme Programming\\\\}\\includegraphics[scale=0.40]{img/5stars.png}\n230: \\textbf{Tech Consulting\\\\}\\includegraphics[scale=0.40]{img/4stars.png}\n231: \\textbf{Software architecture\\\\}\\includegraphics[scale=0.40]{img/4stars.png}\n232: \\textbf{Machine learning\\\\}\\includegraphics[scale=0.40]{img/3stars.png}\n233: ~\n234: \\end{aside}\n235: \\section{Social Commitment}\n236: \\begin{entrylist}\n237: \\entry\n238: {Since 10/19}\n239: {Volleyball}\n240: {ESV Ingolstadt-Ringsee e.V.}\n241: {Vice Chairman of the association and Member of the 1. Men's team\\\\}\n242: \\entry\n243: {Since 05/17}\n244: {Environmental Commitment}\n245: {BRIGHT.eco}\n246: {Commitment about the change towards electric cars \\\\(Trustmark - .ECO community)\\\\}\n247: \\entry\n248: {Since 10/17}\n249: {Student Association}\n250: {Students' Life e.V.}\n251: {Member of Honour \\\\\n252: Previously: Chairman (7/15 - 10/17), Member (7/13 - 07/15)\\\\}\n253: \\entry\n254: {10/13 - 01/20}\n255: {Volleyball Coach}\n256: {Katholische Universität Eichstätt/Ingolstadt}\n257: {Volleyball Coach of the Catholic University Ingolstadt/Eichstätt\\\\}\n258: \\entry\n259: {08/13 - 10/17}\n260: {Student Council}\n261: {Technische Hochschule Ingolstadt}\n262: {Student chairman of the Senate,\\\\ Member of the spokesmen-council and the student convention\\\\ \n263: Previously including: (8/13 - 8/16) \\\\Member of the Senate, spokesmen-council and student convention, Student chairman of the Faculty of Science}\n264: \n265: %{Student chairman of the Senate,\\\\ Member of the spokesmen-council and the student convention\\\\ %Previously: \\\\- Member Senate, spokesmen-council and student convention (8/15 – 8/16)\\\\- Student chairman %of the Faculty of Science and student convention, Member of the student spokesmen-council (8/14 – %8/15)\\\\- Member of the Faculty of Science and student convention (8/13 – 8/14)\\\\}\n266: \\entry\n267: {06/14 - 10/17}\n268: {Music Bands Commissioner}\n269: {Technische Hochschule Ingolstadt}\n270: {Music bands Commissioner and Leader of the Big-Band and several other Bands\\\\}\n271: \\entry\n272: {03/14 - 10/17}\n273: {Investment Club}\n274: {Technische Hochschule Ingolstadt}\n275: {Member of the Investment Club and the Investment Confederation (IT)\\\\}\n276: \\end{entrylist}\n277: \\section{Honors \\& Awards}\n278: \\begin{entrylist}\n279: \\entry\n280: {11/18}\n281: {Bavarian Culture Award}\n282: {Bavarian State Ministry Science and Art}\n283: {}\n284: %\\entry\n285: % {10/16}\n286: %{AUDI Hackathon Finalist}\n287: %{Audi AG}\n288: %{}\n289: \\entry\n290: {04/11}\n291: {EUC SYD Best Trainee}\n292: {EUY SYD}\n293: {}\n294: \\end{entrylist}\n295: \n296: \\section{Certifications}\n297: \\begin{entrylist}\n298: \\entry\n299: {Since 2010}\n300: {Online Courses}\n301: {Udacity , Video2Brain, Google, Audi}\n302: {Certificates from several online courses}\n303: \\end{entrylist}\n304: \n305: \\section{Other Info}\n306: Additional information about me:\\\\\n307: \\emph{Due to my study and serveral different jobs in varied areas of the software development I gained extensively knowledge about diverse technologies. I would be happy to provide any additional information you require regarding my history and know how.}\n308: ~\n309: \\begin{flushleft}\n310: \\emph{\\today}\n311: \\end{flushleft}\n312: \\begin{flushright}\n313: \\includegraphics[scale=1]{img/covering.jpg}\\\\\n314: \\emph{Maximilian C. Zuleger}\n315: \\end{flushright}\n316: \\clearpage\n317: \\end{document}\n318: \n```\n\nCompile log (tail):\n```\n36--277\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 278--295\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 297--304\n\n []\n\nFile: img/covering.jpg Graphic file (type bmp)\n\n[2] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 35986 strings out of 467745\n 739803 string characters out of 5422257\n 1747798 words of memory out of 5000000\n 64615 multiletter control sequences out of 15000+600000\n 629133 words of font info for 87 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,8n,121p,693b,1011s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (3 pages, 70328 bytes).\n```", "target": "\n<<<<<<< SEARCH\n\\end{center}\n ~\n=======\n\\end{center}\n \\obeycr\n ~\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n } \n \\par\\vspace{0.3cm}\n\\begin{center}\n=======\n } \n\\begin{center}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\section{Programming}\n \\smartdiagram[bubble diagram]{\n=======\n \\section{Programming}\n \\restorecr\n \\smartdiagram[bubble diagram]{\n>>>>>>> REPLACE\n", "id": "github_maxizu__cv__6879fbb", "doc": "github_multi/maxizu__cv__6879fbb", "mutation": "real", "source": "github", "repo": "maxizu/cv", "sha": "6879fbb857caa152a02a90628fd99c51ab4e3f98", "parent_sha": "12ce1f3b8a858554037f78dfeb9de9c8d47e9cbb", "license": "MIT", "url": "https://github.com/maxizu/cv/commit/6879fbb857caa152a02a90628fd99c51ab4e3f98", "changed_files": ["2cv.tex"], "original_root": "2cv.tex", "n_files": 26, "engine": "xelatex", "error_category": "LaTeX Error: There's no line here to end.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 91: LaTeX Error: There's no line here to end.\n- line 92: LaTeX Error: There's no line here to end.\n- line 94: LaTeX Error: There's no line here to end.\n- line 103: LaTeX Error: There's no line here to end.\n\nProject files:\n- .github/workflows/build-cv.yml\n- .gitignore\n- 1cover_letter_Vorlage.tex\n- 1old_cover_letter_Vorlage.tex\n- LICENSE\n- Lato-Hairline.ttf\n- README.md\n- bibliography.bib\n- collection.sty\n- cover_ku.tex\n- cover_letter_audi.tex\n- cover_letter_microsoft.tex\n- friggeri-cv.cls\n- img/1stars.png\n- img/2stars.png\n- img/3stars.png\n- img/4stars.png\n- img/5stars.png\n- img/covering.jpg\n- img/den.png\n- img/ger.png\n- img/italia.png\n- img/logo.jpg\n- img/logo.png\n- img/maxi1.jpg\n- img/maxi1q.jpg\n- img/maxi2.jpg\n- img/maxi2q.jpg\n- img/maxi3.jpg\n- img/maxi3q.jpg\n- img/pb.jpg\n- img/picture.png\n- img/snow_circle.png\n- img/usa.png\n- main.tex\n- moderncv.cls\n- moderncvcolorgreen.sty\n- moderncvstyleclassic.sty\n- sty/moderncvcolorblack.sty\n- sty/moderncvcolorblue.sty\n- ... (16 more)\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %!TEX TS-program = xelatex\n2: \\documentclass[]{friggeri-cv}\n3: \\usepackage{afterpage}\n4: \\usepackage{hyperref}\n5: \\usepackage{color}\n6: \\usepackage{xcolor}\n7: \\usepackage{smartdiagram}\n8: \\usepackage{fontspec}\n9: \n10: \\usepackage{metalogo}\n11: \\usepackage[utf8]{inputenc}\n12: \\usepackage{tikz}\n13: \\usetikzlibrary{mindmap,shadows,positioning}\n14: \n15: \n16: \n17: \\hypersetup{\n18: pdftitle={CV-Maximilian Zuleger},\n19: pdfauthor={Maximilian Zuleger},\n20: pdfsubject={cv},\n21: pdfkeywords={cv,maxi,zuleger,software},\n22: colorlinks=false, % no lik border color\n23: allbordercolors=white % white border color for all\n24: }\n25: \\smartdiagramset{\n26: bubble center node font = \\footnotesize,\n27: bubble node font = \\footnotesize,\n28: % specifies the minimum size of the bubble center node\n29: bubble center node size = 0.2cm,\n30: % specifies the minimum size of the bubbles\n31: bubble node size = 0.2cm,\n32: % specifies which is the distance among the bubble center node and the other bubbles\n33: distance center/other bubbles = 0.3cm,\n34: % sets the distance from the text to the border of the bubble center node\n35: distance text center bubble = 0.4cm,\n36: % set center bubble color\n37: bubble center node color = pblue,\n38: % define the list of colors usable in the diagram\n39: set color list = {lightgray, materialcyan, orange, green, materialorange, materialteal, materialamber, materialindigo, materialgreen, materiallime},\n40: % sets the opacity at which the bubbles are shown\n41: bubble fill opacity = 0.6,\n42: % sets the opacity at which the bubble text is shown\n43: bubble text opacity = 0.5,\n44: }\n45: \n46: \\addbibresource{bibliography.bib}\n47: \\RequirePackage{xcolor}\n48: \\definecolor{pblue}{HTML}{0395DE}\n49: \n50: \\begin{document}\n51: \\header{Maximilian~}{Zuleger}\n52: {Software Engineer} \n53: \n54: % Fake text to add separator \n55: %\\fcolorbox{white}{gray}{\\parbox{\\dimexpr\\textwidth-2\\fboxsep-2\\fboxrule}{%\n56: %.....\n57: %}}\n58: \\hspace{5cm}\n59: \\vspace{0.4cm}\n60: % In the aside, each new line forces a line break\n61: \\begin{aside}\n62: %\\includegraphics[scale=0.12]{img/pb.jpg}\n63: \\includegraphics[scale=0.12]{img/maxi2q.jpg}\n64: \\section{Address}\n65: Friedrich-Ebert-Str 18B\n66: 85055 Ingolstadt\n67: ~\n68: \\section{Telephone}\n69: +49 176 63793909\n70: ~\n71: \\section{Mail}\n72: \\href{mailto:kontakt@max-z.de}{\\textbf{kontakt@}max-z.de}\n73: ~\n74: \\section{Web \\& Git}\n75: \\href{https://max-z.de}{max-z.de}\n76: \\href{https://www.linkedin.com/in/maximilian-zuleger-722687129}{LinkedIn}\n77: \\href{https://github.com/maxizu}{github.com/maxizu}\n78: \\href{https://bright.eco}{bright.eco}\n79: \\href{https://maxizu.de}{maxizu.de}\n80: ~\n81: % use \\hspace{} or \\vspace{} to change bubble size, if needed\n82: \\section{Programming}\n83: \\smartdiagram[bubble diagram]{\n84: \\textbf{Java},\n85: \\textbf{C\\#},\n86: \\textbf{Kotlin},\n87: \\textbf{Other},\n88: \\textbf{Web},\n89: \\textbf{Dart}\n90: } \n91: \\par\\vspace{0.3cm}\n92: \\begin{center}\n93: \\section{Personal Skills}\n94: \\vspace{0.35cm}\n95: \\smartdiagram[bubble diagram]{\n96: \\textbf{Loyal},\n97: \\textbf{Efficient},\n98: \\textbf{Realistic},\n99: \\textbf{Accurate},\n100: \\textbf{Flexible},\n101: \\textbf{Calm}\n102: }\n103: \\end{center}\n104: ~\n105: \\end{aside}\n106: ~\n107: ~\n108: \\section{Experience}\n109: \\begin{entrylist}\n110: \\entry\n111: {10/22 - Now}\n112: {Software Engineer}\n113: {amplimind}\n114: {Software Developer, amplimind powered by Audi and Lufthansa Industry \\\\ Solutions, Munich/Germany\\\\}\n115: \\entry\n116: {01/10 - Now}\n117: {Independent Software Developer}\n118: {Mz}\n119: {Software Developer, Website: max-z.de, Ingolstadt/Germany\\\\}\n120: \\entry\n121: {09/18 - 09/22}\n122: {Software Engineer}\n123: {AUDI AG}\n124: {Software Developer at the Audi Software Development Center\\\\}\n125: \\entry\n126: {10/17 - 09/18}\n127: {Software Engineer - E-Mobility}\n128: {AUDI AG}\n129: {Software Engineer and Project Manager for public charging \\\\}\n130: \\entry\n131: {02/17 - 08/17}\n132: {Master Thesis - Electric Car}\n133: {AUDI AG}\n134: {Master thesis about Load Balancing for Charging Stations within Smart City, MQTT and Machine Learning, Ingolstadt/Germany\\\\}\n135: \\entry\n136: {03/16 - 08/17}\n137: {Student Trainee}\n138: {GIGATRONIK AG}\n139: {Software Developer, Machine Learning and Big Data, Ingolstadt/Germany\\\\}\n140: \\entry\n141: {08/15 - 03/16}\n142: {Bachelor Thesis - Neural Networks}\n143: {GIGATRONIK AG}\n144: {Bachelor thesis about neural networks for image recognition in automotive applications, Machine (Deep) Learning, Ingolstadt/Germany\\\\}\n145: \\entry\n146: {06/15 - 10/16}\n147: {Student Trainee}\n148: {Virtual Innovation Forum e.V. - Technische Hochschule Ingolstadt}\n149: {Modelling the fortress of Ingolstadt for the Virtual Innovation Forum at the Technische Hochschule Ingolstadt, Ingolstadt/Germany\\\\}\n150: %\\entry\n151: %{04/15 - 08/15}\n152: %{Student Trainee}\n153: %{GIGATRONIK AG}\n154: %{Automotive Software Engineer, Gigatronik AG, Ingolstadt/Germany\\\\}\n155: \\entry\n156: {09/14 - 03/15}\n157: {Emission Test Laboratory Manager Assistant Intern}\n158: {BMW of North America}\n159: {Software Developer for BMW of North America, Los Angeles/USA\\\\}\n160: %\\entry\n161: % {07/12 - 8/12}\n162: %{Intern}\n163: %{Contabo GmbH}\n164: %{Intern as Web Developer at Contabo GmbH, Munich/Germany\\\\}\n165: %\\entry\n166: %{03/11 - 04/11}\n167: %{Intern}\n168: %{EUC SYD}\n169: %{Electrical engineering and information technology, %internship abroad, Sønderborg/Denmark\\\\}\n170: %\\entry\n171: %{02/11 - 07/11}\n172: %{Intern}\n173: %{FOS Munich}\n174: %{Electrical engineering and information technology, %Workshops FOS/BOS %Munich, Munich/Germany\\\\}\n175: %\\entry\n176: %{09/10 - 02/11}\n177: %{Intern}\n178: %{Siemens AG}\n179: %{Intern as Mechanical Engineer at Siemens, %Munich/Germany\\\\}\n180: %\\entry\n181: %{07/09 - 07/09}\n182: %{Intern}\n183: %{Rohde \\& Schwarz GmbH \\& Co. KG}\n184: %{Intern as a System Administrator, Setting up a server %and managing the IT infrastructure of %Rohde \\& Schwarz, %Munich/Germany\\\\}\n185: \\end{entrylist}\n186: \n187: \\section{Education}\n188: \\begin{entrylist}\n189: \\entry\n190: {2016 - 2017}\n191: {Master's Degree in Computer Science}\n192: {Technische Hochschule Ingolstadt}\n193: {Subject area: Security and Safety, Ingolstadt/Germany\\\\}\n194: \\entry\n195: {2012 - 2016}\n196: {Bachelor's Degree in Computer Science}\n197: {HAW Ingolstadt}\n198: {Optional courses: Math and Automotive Engineering, Ingolstadt/Germany}\n199: \\end{entrylist}\n200: \n201: \\newpage\n202: \n203: \\begin{aside}\n204: ~\n205: ~\n206: \\section{OS Preference}\n207: \\textbf{Windows}\\includegraphics[scale=0.40]{img/5stars.png}\n208: \\textbf{Linux/Unix}\\includegraphics[scale=0.40]{img/4stars.png}\n209: \\textbf{MacOS}\\includegraphics[scale=0.40]{img/4stars.png}\n210: ~\n211: \\section{Languages}\n212: \\textbf{German}\\includegraphics[scale=0.40]{img/5stars.png}\n213: \\textbf{English}\\includegraphics[scale=0.40]{img/4stars.png}\n214: ~\n215: \\section{Places Lived}\n216: ~\n217: \\includegraphics[scale=0.08]{img/ger.png}\n218: Germany (26 years)\n219: ~\n220: \\includegraphics[scale=0.07]{img/usa.png}\n221: United States of America (6 months)\n222: ~\n223: \\includegraphics[scale=0.11]{img/den.png}\n224: Denmark (4 weeks)\n225: ~\n226: \\section{Focus}\n227: ~\n228: \\textbf{Software Developer\\\\}\\includegraphics[scale=0.40]{img/5stars.png}\n229: \\textbf{Extreme Programming\\\\}\\includegraphics[scale=0.40]{img/5stars.png}\n230: \\textbf{Tech Consulting\\\\}\\includegraphics[scale=0.40]{img/4stars.png}\n231: \\textbf{Software architecture\\\\}\\includegraphics[scale=0.40]{img/4stars.png}\n232: \\textbf{Machine learning\\\\}\\includegraphics[scale=0.40]{img/3stars.png}\n233: ~\n234: \\end{aside}\n235: \\section{Social Commitment}\n236: \\begin{entrylist}\n237: \\entry\n238: {Since 10/19}\n239: {Volleyball}\n240: {ESV Ingolstadt-Ringsee e.V.}\n241: {Vice Chairman of the association and Member of the 1. Men's team\\\\}\n242: \\entry\n243: {Since 05/17}\n244: {Environmental Commitment}\n245: {BRIGHT.eco}\n246: {Commitment about the change towards electric cars \\\\(Trustmark - .ECO community)\\\\}\n247: \\entry\n248: {Since 10/17}\n249: {Student Association}\n250: {Students' Life e.V.}\n251: {Member of Honour \\\\\n252: Previously: Chairman (7/15 - 10/17), Member (7/13 - 07/15)\\\\}\n253: \\entry\n254: {10/13 - 01/20}\n255: {Volleyball Coach}\n256: {Katholische Universität Eichstätt/Ingolstadt}\n257: {Volleyball Coach of the Catholic University Ingolstadt/Eichstätt\\\\}\n258: \\entry\n259: {08/13 - 10/17}\n260: {Student Council}\n261: {Technische Hochschule Ingolstadt}\n262: {Student chairman of the Senate,\\\\ Member of the spokesmen-council and the student convention\\\\ \n263: Previously including: (8/13 - 8/16) \\\\Member of the Senate, spokesmen-council and student convention, Student chairman of the Faculty of Science}\n264: \n265: %{Student chairman of the Senate,\\\\ Member of the spokesmen-council and the student convention\\\\ %Previously: \\\\- Member Senate, spokesmen-council and student convention (8/15 – 8/16)\\\\- Student chairman %of the Faculty of Science and student convention, Member of the student spokesmen-council (8/14 – %8/15)\\\\- Member of the Faculty of Science and student convention (8/13 – 8/14)\\\\}\n266: \\entry\n267: {06/14 - 10/17}\n268: {Music Bands Commissioner}\n269: {Technische Hochschule Ingolstadt}\n270: {Music bands Commissioner and Leader of the Big-Band and several other Bands\\\\}\n271: \\entry\n272: {03/14 - 10/17}\n273: {Investment Club}\n274: {Technische Hochschule Ingolstadt}\n275: {Member of the Investment Club and the Investment Confederation (IT)\\\\}\n276: \\end{entrylist}\n277: \\section{Honors \\& Awards}\n278: \\begin{entrylist}\n279: \\entry\n280: {11/18}\n281: {Bavarian Culture Award}\n282: {Bavarian State Ministry Science and Art}\n283: {}\n284: %\\entry\n285: % {10/16}\n286: %{AUDI Hackathon Finalist}\n287: %{Audi AG}\n288: %{}\n289: \\entry\n290: {04/11}\n291: {EUC SYD Best Trainee}\n292: {EUY SYD}\n293: {}\n294: \\end{entrylist}\n295: \n296: \\section{Certifications}\n297: \\begin{entrylist}\n298: \\entry\n299: {Since 2010}\n300: {Online Courses}\n301: {Udacity , Video2Brain, Google, Audi}\n302: {Certificates from several online courses}\n303: \\end{entrylist}\n304: \n305: \\section{Other Info}\n306: Additional information about me:\\\\\n307: \\emph{Due to my study and serveral different jobs in varied areas of the software development I gained extensively knowledge about diverse technologies. I would be happy to provide any additional information you require regarding my history and know how.}\n308: ~\n309: \\begin{flushleft}\n310: \\emph{\\today}\n311: \\end{flushleft}\n312: \\begin{flushright}\n313: \\includegraphics[scale=1]{img/covering.jpg}\\\\\n314: \\emph{Maximilian C. Zuleger}\n315: \\end{flushright}\n316: \\clearpage\n317: \\end{document}\n318: \n```\n\nCompile log (tail):\n```\n36--277\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 278--295\n\n []\n\n\nUnderfull \\hbox (badness 10000) in paragraph at lines 297--304\n\n []\n\nFile: img/covering.jpg Graphic file (type bmp)\n\n[2] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 35986 strings out of 467745\n 739803 string characters out of 5422257\n 1747798 words of memory out of 5000000\n 64615 multiletter control sequences out of 15000+600000\n 629133 words of font info for 87 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,8n,121p,693b,1011s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (3 pages, 70328 bytes).\n```", "repo_url": "https://github.com/maxizu/cv"} {"bib": false, "lane": "project", "file_edits": [{"file": "Chapters/1_Intro/todays_lecture.tex", "search": "\\begin{boxtheorem}[\\Erdos-Ko-Rado]", "replace": "\\begin{boxtheorem}[\\Edros-Ko-Rado]", "type": "real"}, {"file": "Chapters/1_Intro/todays_lecture.tex", "search": " \\abs{H} \\leq \\binom{n}{k} \\cdot \\frac{k}{n} = \\binom{n-1}{k-1}", "replace": " \\abs{H} \\leq \\bimom{n}{k} \\cdot \\frac{k}{n} = \\binom{n-1}{k-1}", "type": "real"}, {"file": "TeX_Setup/shortcuts.tex", "search": "\\newcommand{\\Erdos}{Erd\\H{o}s}", "replace": "\\newcommand{\\Erdos}{Edr\\H{o}s}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["Chapters/1_Intro/todays_lecture.tex", "TeX_Setup/shortcuts.tex"], "single_shot_visible": false, "error_lines": [{"line": 23, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 45, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "s/type1/public/sansmathfonts/cms\nssy10.pfb>\n\nOutput written on main.pdf (22 pages, 393019 bytes).\nPDF statistics:\n 330 PDF objects out of 1000 (max. 8388607)\n 230 compressed objects within 3 object streams\n 67 named destinations out of 1000 (max. 500000)\n 157 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 23: Undefined control sequence.\n- line 45: Undefined control sequence.\n\nProject files:\n- .claude/ORGANIZATION.md\n- .claude/STYLE.md\n- .claude/skills/address-comments/SKILL.md\n- .claude/skills/americanise/SKILL.md\n- .claude/skills/check-correctness/SKILL.md\n- .claude/skills/fill-sorries/SKILL.md\n- .claude/skills/integrate/SKILL.md\n- .claude/skills/organize/SKILL.md\n- .claude/skills/post-lecture/SKILL.md\n- .github/workflows/preview-cleanup.yml\n- .github/workflows/publish-latex.yml\n- .gitignore\n- .vscode/settings.json\n- CLAUDE.md\n- Chapters/.DS_Store\n- Chapters/1_Intro/1_1_Colorings.tex\n- Chapters/1_Intro/1_2_Ramsey.tex\n- Chapters/1_Intro/1_3_Matchings.tex\n- Chapters/1_Intro/1_4_Sperner.tex\n- Chapters/1_Intro/1_Intro.tex\n- Chapters/1_Intro/todays_lecture.tex\n- Chapters/Appendices/A_First_Appendix.tex\n- Chapters/Appendices/Appendices.tex\n- LICENSE\n- README.md\n- TOPICS.md\n- TeX_Outputs/Chapters/.DS_Store\n- TeX_Setup/References.bib\n- TeX_Setup/environments.tex\n- TeX_Setup/format.tex\n- TeX_Setup/packages.tex\n- TeX_Setup/shortcuts.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`TeX_Setup/packages.tex` (full file, line-numbered):\n```\n1: \\usepackage[utf8]{inputenc}\n2: \\usepackage[english]{babel}\n3: \n4: \n5: \\usepackage[most]{tcolorbox}\n6: \\usepackage{authblk} % Lets you add an \\affil{} to your title, stating your affiliation {eg. Sigma Mathematics Society}\n7: \\usepackage{ragged2e}\n8: \\usepackage{csquotes}\n9: \\usepackage{pdfpages}\n10: \n11: \\usepackage[a4paper, total={6.6in, 8in}, textheight=680pt, voffset=32pt, footnotesep=25pt]{geometry} % Adjust margins as necessary\n12: \n13: \\usepackage{xfrac}\n14: \\usepackage{cancel}\n15: \n16: \\usepackage[inline]{enumitem}\n17: \n18: %\\usepackage{tgpagella}\n19: \n20: \\usepackage{blindtext}\n21: \\usepackage{lipsum}\n22: \\usepackage{verbatim}\n23: \\usepackage{hyperref}\n24: \\hypersetup{\n25: citebordercolor = 1 1 1,\n26: linkbordercolor = 1 1 1,\n27: filebordercolor = 1 1 1,\n28: menubordercolor = 1 1 1,\n29: urlbordercolor = 1 1 1,\n30: colorlinks = true,\n31: linkcolor = blue,\n32: citecolor = magenta,\n33: urlcolor = blue\n34: }\n35: \n36: \\usepackage{biblatex} % Modify citation format using [style=yourstyle] parameter--eg \\usepackage[style=mla-new]{biblatex}\n37: \\bibliography{TeX_Setup/References.bib}\n38: \\addbibresource{TeX_Setup/References.bib}\n39: \n40: \\usepackage{cancel}\n41: \\usepackage{amssymb}\n42: \\usepackage{amsmath}\n43: \\usepackage{bm}\n44: % \\usepackage{amsthm} % In `environments.tex`\n45: %\\usepackage{MnSymbol}\n46: \\usepackage{mathrsfs}\n47: \\usepackage{mathtools}\n48: % \\usepackage{mathabx}\n49: \\usepackage{mathdots}\n50: \\usepackage{yhmath}\n51: \n52: \\usepackage{array}\n53: \\usepackage{booktabs}\n54: \\usepackage{longtable}\n55: \n56: \\usepackage{graphicx}\n57: \\newcommand\\sbullet[1][.5]{\\mathbin{\\vcenter{\\hbox{\\scalebox{#1}{$\\bullet$}}}}} % Bullet of customisable size\n58: \\usepackage{wrapfig}\n59: \\usepackage{caption}\n60: \\usepackage{subcaption}\n61: \\usepackage{tikz}\n62: \\usepackage{float}\n63: \n64: % Tikz\n65: \\usepackage{tikz-cd}\n66: \\usepackage{tikz-3dplot}\n67: \\usetikzlibrary{positioning}\n68: \\usetikzlibrary{cd}\n69: \\usetikzlibrary{shapes.geometric}\n70: \\usepackage{pgfplots}\n71: \\usepackage{mathrsfs}\n72: \\usetikzlibrary{arrows}\n73: \\usepackage{qtree}\n74: \n75: \\usepackage[colorinlistoftodos]{todonotes}\n```\n\n`TeX_Setup/format.tex` (full file, line-numbered):\n```\n1: % Font\n2: \n3: \\usepackage{sansmathfonts}\n4: % \\usepackage{mathrsfs}\n5: \\usepackage[T1]{fontenc}\n6: \\renewcommand*\\familydefault{\\sfdefault}\n7: \n8: % Structure and Numbering\n9: \n10: \\usepackage{fancyhdr}\n11: \\usepackage{lastpage}\n12: \n13: \\pagestyle{fancy}\n14: \\fancyhf{}\n15: \n16: \\rhead{{Page \\thepage}}%\\hspace{1pt} of \\pageref{LastPage}}}\n17: \\lhead{\\textit\\slshape\\nouppercase{\\leftmark}}\n18: \n19: \\numberwithin{equation}{section}\n20: \n21: % Lists\n22: \n23: \\setlist[description]{font=\\normalfont}\n24: \\setlist[enumerate]{font=\\normalfont}\n25: \n26: % Spacing and indentation\n27: \n28: \\usepackage{setspace}\n29: \\renewcommand{\\baselinestretch}{1.5}\n30: \n31: \\usepackage[skip=12pt, indent=0pt]{parskip}\n32: %\\usepackage{indentfirst}\n33: \n34: \\allowdisplaybreaks % Allows align environments to continue for several pages\n35: \n36: % Colors\n37: \n38: \\usepackage{xcolor}\n39: \\definecolor{darkblue}{rgb}{0.0, 0.0, 0.55}\n40: \\definecolor{pink}{rgb}{0.858, 0.188, 0.478}\n41: \\definecolor{brown}{rgb}{0.8, 0.4, 0.0}\n```\n\n`TeX_Setup/environments.tex` (full file, line-numbered):\n```\n1: \\usepackage{amsthm}\n2: \\usepackage{cleveref}\n3: \n4: \\newtheorem*{theorem*}{Theorem}\n5: \\newtheorem{theorem}{Theorem}[section]\n6: \\newtheorem{corollary}[theorem]{Corollary}%[theorem]\n7: \\newtheorem{lemma}[theorem]{Lemma}\n8: \\newtheorem{claim}[theorem]{Claim}\n9: \\newtheorem{conjecture}[theorem]{Conjecture}\n10: \\newtheorem{algorithm}[theorem]{Algorithm}\n11: \\newtheorem{proposition}[theorem]{Proposition}\n12: \\newtheorem{problem}{Exercise}[section]\n13: \\newenvironment{boxproblem}{\n14: \\begin{tcolorbox}[colback=white!90!black,colframe=black, breakable, enhanced]\\begin{problem}\n15: }{\n16: \\end{problem}\\end{tcolorbox}\n17: }\n18: \\newenvironment{boxtheorem}{\n19: \\begin{tcolorbox}[colback=yellow!15!white,colframe=orange, breakable, enhanced]\\begin{theorem}\n20: }{\n21: \\end{theorem}\\end{tcolorbox}\n22: }\n23: \\newenvironment{boxproposition}{\n24: \\begin{tcolorbox}[colback=yellow!15!white,colframe=orange, breakable, enhanced]\\begin{proposition}\n25: }{\n26: \\end{proposition}\\end{tcolorbox}\n27: }\n28: \\newenvironment{boxlemma}{\n29: \\begin{tcolorbox}[colback=yellow!15!white,colframe=orange, breakable, enhanced]\\begin{lemma}\n30: }{\n31: \\end{lemma}\\end{tcolorbox}\n32: }\n33: \\newenvironment{boxcorollary}{\n34: \\begin{tcolorbox}[colback=yellow!15!white,colframe=orange, breakable, enhanced]\\begin{corollary}\n35: }{\n36: \\end{corollary}\\end{tcolorbox}\n37: }\n38: \n39: \\theoremstyle{remark}\n40: \\newtheorem*{remark}{Remark}\n41: \\newtheorem*{solution}{Solution}\n42: \n43: \\theoremstyle{definition}\n44: \\newtheorem{definition}[theorem]{Definition}\n45: \\newenvironment{boxdefinition}{\n46: \\begin{tcolorbox}[colback=cyan!10!white,colframe=cyan!70!black, breakable, enhanced]\\begin{definition}\n47: }{\n48: \\end{definition}\\end{tcolorbox}\n49: }\n50: \\newtheorem*{convention}{Convention}\n51: \\newenvironment{boxconvention}{\n52: \\begin{tcolorbox}[colback=magenta!3!white,colframe=magenta!70!black, breakable, enhanced]\\begin{convention}\n53: }{\n54: \\end{convention}\\end{tcolorbox}\n55: }\n56: \\newtheorem*{notation}{Notation}\n57: \\newenvironment{boxnotation}{\n58: \\begin{tcolorbox}[colback=magenta!3!white,colframe=magenta!70!black, breakable, enhanced]\\begin{notation}\n59: }{\n60: \\end{notation}\\end{tcolorbox}\n61: }\n62: \\newtheorem*{lnotation}{Local Notation}\n63: \\newenvironment{boxlnotation}{\n64: \\begin{tcolorbox}[colback=magenta!3!white,colframe=magenta!70!black, breakable, enhanced]\\begin{lnotation}\n65: }{\n66: \\end{lnotation}\\end{tcolorbox}\n67: }\n68: \\newtheorem*{abbreviation}{Abbreviation}\n69: \\newenvironment{boxabbrev}{\n70: \\begin{tcolorbox}[colback=magenta!3!white,colframe=magenta!70!black, breakable, enhanced]\\begin{abbreviation}\n71: }{\n72: \\end{abbreviation}\\end{tcolorbox}\n73: }\n74: \\newtheorem*{warning}{Warning}\n75: \\newenvironment{boxwarning}{\n76: \\begin{tcolorbox}[colback=red!50!white,colframe=red!50!black, breakable, enhanced]\\begin{warning}\n77: }{\n78: \\end{warning}\\end{tcolorbox}\n79: }\n80: \\newtheorem{example}[theorem]{Example}\n81: \\newenvironment{boxexample}{\n82: \\begin{tcolorbox}[colframe=green!30!black, breakable, enhanced, breakable, enhanced]\\begin{example}\n83: }{\n84: \\end{example}\\end{tcolorbox}\n85: }\n86: \\newtheorem{nexample}[theorem]{Non-Example}\n87: \\newenvironment{boxnexample}{\n88: \\begin{tcolorbox}[colframe=red!50!black, breakable, enhanced]\\begin{nexample}\n89: }{\n90: \\end{nexample}\\end{tcolorbox}\n91: }\n92: \\newtheorem{cexample}[theorem]{Counterexample}\n93: \\newenvironment{boxcexample}{\n94: \\begin{tcolorbox}[colframe=red!50!black, breakable, enhanced]\\begin{cexample}\n95: }{\n96: \\end{cexample}\\end{tcolorbox}\n97: }\n98: \\newtheorem{exercise}[theorem]{Exercise}\n99: \\newenvironment{boxexercise}{\n100: \\begin{tcolorbox}[colframe=white!30!black, breakable, enhanced, breakable, enhanced]\\begin{exercise}\n101: }{\n102: \\end{exercise}\\end{tcolorbox}\n103: }\n104: \n105: % Proofs of an \"if and only if\", whose two directions are the two items of a\n106: % `description`. The order of the directions is left to each proof.\n107: \\newenvironment{iffproof}{\n108: \\begin{proof} \\hfill \\begin{description}\n109: }{\n110: \\end{description} \\end{proof}\n111: }\n112: \\newcommand{\\ifdir}{\\item[$\\parenth{\\impliedby}$]}\n113: \\newcommand{\\onlyifdir}{\\item[$\\parenth{\\implies}$]}\n114: \n115: % \\def\\SMALLCOLWIDTH{1.5cm}\n116: \\newcolumntype{C}[1]{>{\\centering\\let\\newline\\\\\\arraybackslash\\hspace{0pt}}m{#1}}\n```\n\n`TeX_Setup/shortcuts.tex` (head and lines matching the log, line-numbered):\n```\n...\n4: \n...\n6: \n7: \\newcommand{\\sorry}{\\textcolor{red}{\\texttt{sorry}}}\n8: \n...\n10: \n11: \\newcommand{\\drawplane}{ % For use with TikZ\n12: \\draw[step=0.5cm,gray,very thin] (-3,-3) grid (3,3);\n13: \\draw[thick,->] (-3,0) -- (3,0) node[anchor=west] {$x$};\n14: \\draw[thick,->] (0,-3) -- (0,3) node[anchor=south] {$y$};\n15: \\node[black, anchor=north east] at (0, 0) {$0$};\n16: }\n17: \\usetikzlibrary{decorations.markings}\n18: \\tikzset{->-/.style={decoration={\n19: markings,\n20: mark=at position #1 with {\\arrow{>}}},postaction={decorate}\n21: }}\n22: \n23: \\newenvironment{cd}{\n24: \\begin{equation} \\begin{tikzcd}\n25: }{\n26: \\end{tikzcd} \\end{equation}\n27: }\n28: \\newenvironment{cd*}{\n29: \\begin{equation*} \\begin{tikzcd}\n30: }{\n31: \\end{tikzcd} \\end{equation*}\n32: }\n33: \n34: \\newcommand{\\drawsquare}[1]{\n35: \\draw[thick, blue]\n```\n\n`Chapters/1_Intro/1_Intro.tex` (full file, line-numbered):\n```\n1: %% WEEK 1\n2: \n3: \\chapter{Graphs and Colorings} \\label{Ch1:CH}\n4: \\thispagestyle{empty}\n5: \n6: Much of this course will be about graphs, and a surprising amount of what we want to know about a graph can be phrased as a question about coloring it. We begin with the vocabulary, and then settle the first such question completely: which graphs admit a coloring with only two colors. We then ask the same question of hypergraphs, where it becomes considerably harder---even pinning down how many edges a $3$-uniform hypergraph needs before two colors are no longer enough takes real work. % [CORRECTED] was: \"how large must a graph be before every coloring of it is forced to produce something\n7: % monochromatic\" --- no bound on the number of vertices forces anything ($K_{\\lceil n/2 \\rceil, \\lfloor n/2 \\rfloor}$ is\n8: % triangle-free at every size), and the colorings in question are of edges, not of vertices as everywhere above.\n9: Turning the question around---how large must a complete graph be before every coloring of its edges is forced to produce something monochromatic---gives us the Ramsey numbers. The chapter then leaves coloring behind and puts two more questions to hypergraphs: whether one vertex can be chosen out of each edge, all of them different, which is Hall's marriage theorem; and how many edges a hypergraph can have once no edge is allowed to sit inside another, which is Sperner's.\n10: \n11: \\begin{boxnotation} \\hfill\n12: \\begin{itemize}\n13: \\item $[k]$ will denote $\\set{1, \\ldots, k}$.\n14: \\item $\\sim$ will denote the adjacency relation on graph vertices.\n15: \\item $K_n$ will denote the complete graph on $n$ vertices.\n16: \\end{itemize}\n17: \\end{boxnotation}\n18: \n19: \\input{Chapters/1_Intro/1_1_Colorings.tex}\n20: \\input{Chapters/1_Intro/1_2_Ramsey.tex}\n21: \\input{Chapters/1_Intro/1_3_Matchings.tex}\n22: \\input{Chapters/1_Intro/1_4_Sperner.tex}\n23: \\input{Chapters/1_Intro/todays_lecture}\n24: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper, 12pt, openany, oneside]{book}\n2: \n3: \\def\\COURSENUMBER{21-701}\n4: \\def\\COURSENAME{Discrete Mathematics}\n5: \\def\\LECTURER{Wes Pegden}\n6: \\def\\SCRIBE{Sidharth Hariharan}\n7: \\def\\UNIVERSITY{Carnegie Mellon University}\n8: \\def\\TERM{Fall 2026}\n9: \\def\\REPONAME{DiscreteMathNotes}\n10: \n11: \\input{TeX_Setup/packages.tex}\n12: \n13: \\input{TeX_Setup/format.tex}\n14: \n15: \\input{TeX_Setup/environments.tex}\n16: \n17: \\input{TeX_Setup/shortcuts.tex}\n18: \n19: \\title{\\vspace{-2em} {\\huge \\COURSENUMBER: \\COURSENAME}}\n20: \n21: \\author{\n22: Lecturer: \\LECTURER \\\\\n23: Scribe: \\SCRIBE\n24: \\\\ \\hfill \\\\\n25: \\UNIVERSITY\\ - \\TERM}\n26: % \\author{\n27: % \\begin{tabular}{rl}\n28: % Lecturer: & \\LECTURER \\\\\n29: % Scribes: & \\SCRIBE\n30: % \\end{tabular}\n31: % }\n32: \\date{\n33: This version of the notes was last compiled on \\today.\n34: \\\\ \\hfill \\\\\n35: For the latest version, visit \\url{https://thefundamentaltheor3m.github.io/\\REPONAME/main.pdf}.\n36: \\\\ \\hfill \\\\\n37: For comments, errors or suggestions, please raise an issue/make a pull request at \\url{https://github.com/thefundamentaltheor3m/\\REPONAME}.\n38: }\n39: \n40: \\begin{document}\n41: \n42: \\setlength{\\abovedisplayskip}{7.5pt} % Space above an align environment\n43: \\setlength{\\belowdisplayskip}{7.5pt} % Space below an align environment\n44: \\setlength{\\abovedisplayshortskip}{2pt}\n45: \\setlength{\\belowdisplayshortskip}{2pt}\n46: \n47: \\maketitle\n48: \\thispagestyle{empty}\n49: \n50: \\tableofcontents\n51: \\thispagestyle{empty}\n52: \n53: \\newpage\n54: \n55: \\nocite{*}\n56: \n57: \\input{Chapters/1_Intro/1_Intro.tex}\n58: \n59: % \\input{Chapters/Appendices/Appendices.tex}\n60: \n61: \\newpage\n62: \n63: % \\chapter*{References}\n64: % \\addcontentsline{toc}{chapter}{References}\n65: % \\thispagestyle{empty}\n66: \n67: % These lecture notes are based heavily on the following references:~\\cite{ErdmannWildon}\n68: \n69: \\defbibnote{mybibnote}{These lecture notes are based heavily on the following references:}\n70: \n71: \\printbibliography[prenote=mybibnote]\n72: \\addcontentsline{toc}{chapter}{Bibliography}\n73: \\thispagestyle{empty}\n74: \n75: Visit~\\url{https://thefundamentaltheor3m.github.io/\\REPONAME/main.pdf} for the latest version of these notes. If you have any suggestions or corrections, please feel free to fork and make a pull request to the \\href{https://github.com/thefundamentaltheor3m/\\REPONAME}{associated GitHub repository}.\n76: \n77: \\end{document}\n78: \n```\n\nCompile log (tail):\n```\ns/type1/public/sansmathfonts/cms\nssy10.pfb>\n\nOutput written on main.pdf (22 pages, 393019 bytes).\nPDF statistics:\n 330 PDF objects out of 1000 (max. 8388607)\n 230 compressed objects within 3 object streams\n 67 named destinations out of 1000 (max. 500000)\n 157 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\newcommand{\\Erdos}{Edr\\H{o}s}\n=======\n\\newcommand{\\Erdos}{Erd\\H{o}s}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\abs{H} \\leq \\bimom{n}{k} \\cdot \\frac{k}{n} = \\binom{n-1}{k-1}\n=======\n \\abs{H} \\leq \\binom{n}{k} \\cdot \\frac{k}{n} = \\binom{n-1}{k-1}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\begin{boxtheorem}[\\Edros-Ko-Rado]\n=======\n\\begin{boxtheorem}[\\Erdos-Ko-Rado]\n>>>>>>> REPLACE\n", "id": "github_thefundamentaltheor3m__DiscreteMathNotes__382d5a9", "doc": "github_multi/thefundamentaltheor3m__DiscreteMathNotes__382d5a9", "mutation": "real", "source": "github", "repo": "thefundamentaltheor3m/DiscreteMathNotes", "sha": "382d5a9481aca0228e969406405d43ec467e8edb", "parent_sha": "fa42a573580ebee744724cfe769af6e10d8c999a", "license": "Apache-2.0", "url": "https://github.com/thefundamentaltheor3m/DiscreteMathNotes/commit/382d5a9481aca0228e969406405d43ec467e8edb", "changed_files": ["Chapters/1_Intro/todays_lecture.tex", "TeX_Setup/shortcuts.tex"], "original_root": "main.tex", "n_files": 14, "engine": "pdflatex", "error_category": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 23: Undefined control sequence.\n- line 45: Undefined control sequence.\n\nProject files:\n- .claude/ORGANIZATION.md\n- .claude/STYLE.md\n- .claude/skills/address-comments/SKILL.md\n- .claude/skills/americanise/SKILL.md\n- .claude/skills/check-correctness/SKILL.md\n- .claude/skills/fill-sorries/SKILL.md\n- .claude/skills/integrate/SKILL.md\n- .claude/skills/organize/SKILL.md\n- .claude/skills/post-lecture/SKILL.md\n- .github/workflows/preview-cleanup.yml\n- .github/workflows/publish-latex.yml\n- .gitignore\n- .vscode/settings.json\n- CLAUDE.md\n- Chapters/.DS_Store\n- Chapters/1_Intro/1_1_Colorings.tex\n- Chapters/1_Intro/1_2_Ramsey.tex\n- Chapters/1_Intro/1_3_Matchings.tex\n- Chapters/1_Intro/1_4_Sperner.tex\n- Chapters/1_Intro/1_Intro.tex\n- Chapters/1_Intro/todays_lecture.tex\n- Chapters/Appendices/A_First_Appendix.tex\n- Chapters/Appendices/Appendices.tex\n- LICENSE\n- README.md\n- TOPICS.md\n- TeX_Outputs/Chapters/.DS_Store\n- TeX_Setup/References.bib\n- TeX_Setup/environments.tex\n- TeX_Setup/format.tex\n- TeX_Setup/packages.tex\n- TeX_Setup/shortcuts.tex\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper, 12pt, openany, oneside]{book}\n2: \n3: \\def\\COURSENUMBER{21-701}\n4: \\def\\COURSENAME{Discrete Mathematics}\n5: \\def\\LECTURER{Wes Pegden}\n6: \\def\\SCRIBE{Sidharth Hariharan}\n7: \\def\\UNIVERSITY{Carnegie Mellon University}\n8: \\def\\TERM{Fall 2026}\n9: \\def\\REPONAME{DiscreteMathNotes}\n10: \n11: \\input{TeX_Setup/packages.tex}\n12: \n13: \\input{TeX_Setup/format.tex}\n14: \n15: \\input{TeX_Setup/environments.tex}\n16: \n17: \\input{TeX_Setup/shortcuts.tex}\n18: \n19: \\title{\\vspace{-2em} {\\huge \\COURSENUMBER: \\COURSENAME}}\n20: \n21: \\author{\n22: Lecturer: \\LECTURER \\\\\n23: Scribe: \\SCRIBE\n24: \\\\ \\hfill \\\\\n25: \\UNIVERSITY\\ - \\TERM}\n26: % \\author{\n27: % \\begin{tabular}{rl}\n28: % Lecturer: & \\LECTURER \\\\\n29: % Scribes: & \\SCRIBE\n30: % \\end{tabular}\n31: % }\n32: \\date{\n33: This version of the notes was last compiled on \\today.\n34: \\\\ \\hfill \\\\\n35: For the latest version, visit \\url{https://thefundamentaltheor3m.github.io/\\REPONAME/main.pdf}.\n36: \\\\ \\hfill \\\\\n37: For comments, errors or suggestions, please raise an issue/make a pull request at \\url{https://github.com/thefundamentaltheor3m/\\REPONAME}.\n38: }\n39: \n40: \\begin{document}\n41: \n42: \\setlength{\\abovedisplayskip}{7.5pt} % Space above an align environment\n43: \\setlength{\\belowdisplayskip}{7.5pt} % Space below an align environment\n44: \\setlength{\\abovedisplayshortskip}{2pt}\n45: \\setlength{\\belowdisplayshortskip}{2pt}\n46: \n47: \\maketitle\n48: \\thispagestyle{empty}\n49: \n50: \\tableofcontents\n51: \\thispagestyle{empty}\n52: \n53: \\newpage\n54: \n55: \\nocite{*}\n56: \n57: \\input{Chapters/1_Intro/1_Intro.tex}\n58: \n59: % \\input{Chapters/Appendices/Appendices.tex}\n60: \n61: \\newpage\n62: \n63: % \\chapter*{References}\n64: % \\addcontentsline{toc}{chapter}{References}\n65: % \\thispagestyle{empty}\n66: \n67: % These lecture notes are based heavily on the following references:~\\cite{ErdmannWildon}\n68: \n69: \\defbibnote{mybibnote}{These lecture notes are based heavily on the following references:}\n70: \n71: \\printbibliography[prenote=mybibnote]\n72: \\addcontentsline{toc}{chapter}{Bibliography}\n73: \\thispagestyle{empty}\n74: \n75: Visit~\\url{https://thefundamentaltheor3m.github.io/\\REPONAME/main.pdf} for the latest version of these notes. If you have any suggestions or corrections, please feel free to fork and make a pull request to the \\href{https://github.com/thefundamentaltheor3m/\\REPONAME}{associated GitHub repository}.\n76: \n77: \\end{document}\n78: \n```\n\nCompile log (tail):\n```\ns/type1/public/sansmathfonts/cms\nssy10.pfb>\n\nOutput written on main.pdf (22 pages, 393019 bytes).\nPDF statistics:\n 330 PDF objects out of 1000 (max. 8388607)\n 230 compressed objects within 3 object streams\n 67 named destinations out of 1000 (max. 500000)\n 157 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/thefundamentaltheor3m/DiscreteMathNotes"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\input{FrontMatter/hyphenations}", "replace": "\\input{Frontmatter/hyphenations}", "type": "real"}, {"file": "main.tex", "search": "\\input{FrontMatter/shorthand}", "replace": "\\input{Frontmatter/shorthand}", "type": "real"}, {"file": "main.tex", "search": "\\input{FrontMatter/acronyms}", "replace": "\\input{Frontmatter/acronyms}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 48, "text": "LaTeX Error: File `Frontmatter/hyphenations.tex' not found.", "file": "main.tex", "fileLabel": null}], "log_tail": "r/tikz/librarie\ns/tikzlibraryarrows.code.tex\nFile: tikzlibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/libraries/pgflibraryarrows.\ncode.tex\nFile: pgflibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\\arrowsize=\\dimen384\n))\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarychains.code.tex\nFile: tikzlibrarychains.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarypositioning.code.tex\nFile: tikzlibrarypositioning.code.tex 2026-08-01 v3.1.12 (3.1.12)\n))\n\\fwidth=\\skip269\n\\c@thumbcounter=\\count619\n\\c@colorcounter=\\count620\n)\n\n! LaTeX Error: File `Frontmatter/hyphenations.tex' not found.\n\nType X to quit or to proceed,\nor enter new name. (Default extension: tex)\n\nEnter file name: \n! Emergency stop.\n \n \nl.48 \\input{Frontmatter/hyphenations}\n ^^M\n*** (cannot \\read from terminal in nonstop modes)\n\n \nHere is how much of TeX's memory you used:\n 67765 strings out of 467099\n 1626810 string characters out of 5408265\n 2608511 words of memory out of 5000000\n 96344 multiletter control sequences out of 15000+600000\n 632706 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,0n,118p,1490b,399s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 48: LaTeX Error: File `Frontmatter/hyphenations.tex' not found.\n\nProject files:\n- .gitignore\n- BackMatter/acknowledgements.tex\n- BackMatter/appendix-example.tex\n- BackMatter/backcover.tex\n- BackMatter/cv.tex\n- BackMatter/epilogue.tex\n- BackMatter/publications.tex\n- BackMatter/samenvatting.tex\n- BackMatter/siks.tex\n- CITATION.cff\n- FrontMatter/Cover/Cover.png\n- FrontMatter/Cover/CoverBackground.png\n- FrontMatter/Logos/nwo.eps\n- FrontMatter/Logos/sikskleur.eps\n- FrontMatter/acronyms.tex\n- FrontMatter/cover.tex\n- FrontMatter/hyphenations.tex\n- FrontMatter/preface.tex\n- FrontMatter/shorthand.tex\n- FrontMatter/title.tex\n- LICENSE\n- MainMatter/conclusions.tex\n- MainMatter/introduction.tex\n- MainMatter/paper1/paper1-main.tex\n- README.md\n- dissertation.cls\n- fonts/BookmanOldStyle-Bold.ttf\n- fonts/BookmanOldStyle-BoldItalic.ttf\n- fonts/BookmanOldStyle-Italic.ttf\n- fonts/BookmanOldStyle.ttf\n- fonts/CourierNewPS-BoldItalicMT.ttf\n- fonts/CourierNewPS-BoldMT.ttf\n- fonts/CourierNewPS-ItalicMT.ttf\n- fonts/CourierNewPSMT.ttf\n- fonts/Tahoma-Bold.ttf\n- fonts/Tahoma.ttf\n- main.tex\n- references.bib\n- stylesheet.tex\n\nOther project files (edit them with ):\n\n`stylesheet.tex` (head and lines matching the log, line-numbered):\n```\n...\n10: \n...\n12: \\usepackage{lipsum}\n13: \n...\n16: \n...\n18: \\usepackage{marvosym}\n19: \n20: \n...\n22: \\usepackage{datetime}\n23: \\newdateformat{monthyeardate}{\\monthname[\\THEMONTH] \\THEYEAR}\n24: \n...\n26: \\usepackage{acro}\n...\n28: \\acsetup{make-links=true}\n29: \n30: \n...\n32: \\usepackage{layout}\n33: \n...\n35: \\usepackage{tocloft}\n36: \n...\n38: \\usepackage[parfill]{parskip}\n39: \n...\n41: \\usepackage[T1]{fontenc}\n42: \n...\n44: \\usepackage{setspace}\n45: \n46: \n47: \\usepackage{import}\n...\n50: \n...\n52: \\usepackage{lipsum}\n53: \\usepackage{mdframed}\n54: \n...\n139: %\\pgfplotsset{compat=newest}\n140: %\\pgfplotsset{plot coordinates/math parser=false}\n141: \\newlength{\\fwidth}\n142: \\colorlet{lcnorm}{black}\n143: \n```\n\n`FrontMatter/hyphenations.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: %%%%\t\t~~~~ EDITOR'S NOTE ~~~~\n3: %%\n4: %% This file contains hyphenation definitions \n5: %% Use for instance: https://www.hyphenator.net/ \n6: %% \n7: %% This is the PhD thesis of Laurens P. Stoop in LaTeX\n8: %% - Comments, remarks and more: email me at laurensstoop@protonmail.com\n9: %%\n10: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n11: \n12: \n13: %% specific terminology\n14: \\hyphenation{me-te-o-ro-log-i-cal}\n15: \\hyphenation{e-ner-gy-me-te-o-ro-log-i-cal}\n16: \\hyphenation{sea-son-al}\n17: \n18: \n19: %% Regions & names\n20: \n21: \n22: %% general wording\n23: \\hyphenation{de-ter-mined}\n24: \n25: \n```\n\n`FrontMatter/shorthand.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: %%%%\t\t~~~~ EDITOR'S NOTE ~~~~\n3: %%\n4: %% This file contains shorthand definitions \n5: %% \n6: %% This is the PhD thesis of Laurens P. Stoop in LaTeX\n7: %% - Comments, remarks and more: email me at laurensstoop@protonmail.com\n8: %%\n9: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n10: \n11: \n12: % A short-hand for superscripting\n13: \\newcommand{\\ts}[1]{\\textsuperscript{#1}}\n14: % rotations\n15: \\newcommand*\\rot{\\rotatebox{90}}\n16: \n17: % short-hand for the index name\n18: \\newcommand{\\credi}[0]{{\\sc credi}}\n19: \\newcommand{\\sdi}[0]{Solar \\credi}\n20: \\newcommand{\\wdi}[0]{Wind \\credi}\n```\n\n`references.bib` (full file, line-numbered):\n```\n1: % Encoding: UTF-8\n2: @ARTICLE{Einstein1906,\n3: author = {Einstein, A.},\n4: title = {Eine neue Bestimmung der Molek\\\"uldimensionen},\n5: journal = {Annalen der Physik},\n6: year = {1906},\n7: volume = {324},\n8: pages = {289--306},\n9: number = {2},\n10: doi = {10.1002/andp.19063240204},\n11: url = {http://dx.doi.org/10.1002/andp.19063240204}\n12: }\n```\n\n`FrontMatter/acronyms.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: %%%%\t\t~~~~ EDITOR'S NOTE ~~~~\n3: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n4: %\n5: % This file contains the fancy definition of acronyms\n6: % - requires a full compilation cycle to work properly\n7: % - when defined here, the handle can be used in text with \\ac{}\n8: %\n9: % This is the PhD thesis of Laurens P. Stoop in LaTeX\n10: % - Comments, remarks and more: email me at laurensstoop@protonmail.com\n11: %\n12: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n13: %%%%\t \t ~~~~ END OF: EDITOR'S NOTE ~~~~\n14: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n15: \n16: \n17: \n18: %%%%%%%%%%%%%%%%%%%%%%%%%%%%\n19: %%%% ~~~~ Example ~~~~\n20: %%%%%%%%%%%%%%%%%%%%%%%%%%%%\n21: %\n22: %\n23: % For a given handle, an acronym's full definition can be provided with:\n24: % \\DeclareAcronym{}{\n25: % short=,\n26: % long=,\n27: % }\n28: %\n29: % In text then used with \\ac{}\n30: % - Full form first time (forced with \\acf{} )\n31: % - Short form after this (forced with \\acs{} )\n32: % - Long form forced with \\acl{}\n33: % If needed specifically\n34: \n35: %% Example used in the Introduction\n36: \\DeclareAcronym{eu}{\n37: short=EU,\n38: long=European Union\n39: }\n40: \n41: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: %%%%\t\t~~~~ EDITOR'S NOTE ~~~~\n3: %%\n4: %% This is the PhD thesis of Laurens P. Stoop in LaTeX\n5: %%\n6: %% Inspired by the TU Delft dissertation class, but heavily modded.\n7: %%\n8: %% This document is inteded to be a style guide to a nice and fancy LaTeX thesis.\n9: %% - Comments are used to explain code (% sign)\n10: %% - Make it your own by selecting only the things you want\n11: %% - If in possible options you meet a couple of dots (...) more options are available (see documentation of pkg)\n12: %%\n13: %% Comments, remarks and more: email me at laurensstoop@protonmail.com\n14: %%\n15: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n16: \n17: \n18: %%%% documentclass: dissertation\n19: \\documentclass[]{dissertation}\n20: \n21: %%%% Title\n22: %% this title will be used everywhere\n23: \\title[or an approach from multiple fields]{A lightning start to a dissertations }\n24: \n25: \n26: %%%% Author\n27: %% this will be used everywhere\n28: \\author{Your First Names}{Lastname}\n29: \n30: \n31: \n32: \n33: \n34: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n35: %%%% ~~~~ PREAMBLE ~~~~\n36: %% - Stylesheet\n37: %% - hyphenations (opt)\n38: %% - shorthands (opt)\n39: %% - reference file\n40: %% - acronyms (opt)\n41: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n42: \n43: %%%% Stylesheet\n44: %% The thesis stylesheet, includes more package specifics\n45: \\input{stylesheet}\n46: \n47: %% (opt) Specific Hyphenations \n48: \\input{Frontmatter/hyphenations}\n49: \n50: %% (opt) Specific LaTeX shorthands\n51: \\input{Frontmatter/shorthand}\n52: \n53: %% Set the file with the references\n54: \\addbibresource{references.bib}\n55: \n56: %% (opt) Include the acronyms definitions\n57: \\input{Frontmatter/acronyms}\n58: \n59: \n60: \n61: \n62: %% N.B.: Strong use of \\include{file} to reduce compilation time in draft stage\n63: %% - tex-files of chapters are located in (sub-)folders (FrontMatter, MainMatter, BackMatter)\n64: \\begin{document}\n65: \n66: \n67: \n68: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n69: %%%% ~~~~ FrontMatter ~~~~\n70: %% i.e. everything before the introduction\n71: %%\n72: %% - Cover (opt as part of PDF)\n73: %% - Dedication (opt)\n74: %% - Titlepages\n75: %% - Table of Contents\n76: %% - Prologue (opt)\n77: %% - Glossary/List of acronyms (opt)\n78: %%\n79: %% N.B.: The order of these chapters, of the content is not 100% set in stone, after the cover and title-pages, there is some variation\n80: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n81: \n82: %% Use Arabic numerals for the page numbers of the chapters.\n83: \\pagenumbering{roman}\n84: \n85: \n86: %%%% Cover (opt in PDF) \n87: \\include{FrontMatter/cover}\n88: \n89: %%%% Titlepages\n90: \\include{FrontMatter/title}\n91: \n92: \n93: %%%% Table of Contents\n94: %% - Set depth of ToC at this point to 1\n95: %% - Start all counters after the ToC\n96: \\setcounter{tocdepth}{1}\n97: \\tableofcontents\n98: \\startcontents\n99: \n100: %%%% Acronym listing (opt)\n101: \\printacronyms\n102: \\addcontentsline{toc}{chapter}{Acronyms}\n103: \\setheader{Acronyms}\n104: \n105: %%% Prologue or preface (opt)\n106: \\include{FrontMatter/preface}\n107: \n108: \n109: \n110: \n111: \n112: %% Force clear pages to make it neat\n113: \\cleardoublepage\n114: \n115: \n116: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n117: %%%% ~~~~ MainMatter ~~~~\n118: %% i.e. the core chapters with an introduction and conclusion\n119: %%\n120: %% - Introduction\n121: %% - Core chapters\n122: %% - Conclusion\n123: %%\n124: %% Here parts are used to provide additional structure to the thesis, this is optional\n125: %%\n126: %% N.B.: No chapter TOC is used for the introduction\n127: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n128: \n129: %%%% Main Matter style settings\n130: %% Use Arabic numerals for the page numbers of the chapters.\n131: \\pagenumbering{arabic}\n132: \n133: %% Turn on thumb indices.\n134: \\thumbtrue\n135: \n136: \n137: \n138: \n139: \n140: \n141: \n142: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n143: %%%% ~~~~ PART I ~~~~ INTRODUCTION\n144: %%\n145: %% - Introduction\n146: %% - Context / theoretical background\n147: %% - Researhc questions / structure\n148: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n149: \n150: %%%% Part-title and properties\n151: %% Progress the thumbcounter\n152: \\stepcounter{thumbcounter}\n153: %% Colour to use for this part\n154: \\setcounter{colorcounter}{1}\n155: %% Name and label\n156: \\part[Introduction title in the TOC]{Introduction title on the chapter titlepage}\n157: \\label{part:intro}\n158: \n159: \n160: \n161: %%%% Qoute\n162: \\epigraph{\n163: You're only given a little spark of madness, and if you lose that... \\\\ you're nothing.\n164: }{Robin Williams}\n165: \n166: %%%% PLAIN LANGUAGE SUMMARY\n167: \\section*{Plain Language Summary}\n168: This thesis describes the design, application and evaluation of metrics and measures aimed to support stakeholders to achieve something awesome. \n169: \n170: We show off some cool findings, like the specifc method we used.\n171: \n172: Several new techniques have also been explored. \n173: This meant that we could provide more in-depth insight where it was needed. \n174: \n175: %%%% Part table of contents\n176: \\newpage\n177: \\chaptoc\n178: \n179: \n180: \n181: \n182: %%%% Introduction\n183: %% General introduction to the thesis\n184: \\include{MainMatter/introduction}\n185: \n186: \n187: \n188: %% Force clear pages to make it neat\n189: \\cleardoublepage\n190: \n191: \n192: \n193: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n194: %%%% ~~~~ PART II ~~~~ Methods and metrics\n195: %%\n196: %% - Paper 1: Properties of this LaTeX class\n197: %% - Paper 2: A filler chapter\n198: %% - Paper 3: Some filler chapter\n199: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n200: \n201: \n202: \n203: %%%% Part-title and properties\n204: %% Progress the thumbcounter\n205: \\stepcounter{thumbcounter}\n206: %% Colour to use for this part\n207: \\setcounter{colorcounter}{2}\n208: %% Name and label\n209: \\part[Properties of a dissertation class]{Properties of a dissertation class}\n210: \\label{part:second}\n211: \n212: %%%% Qoute\n213: \\epigraph{\n214: If you like quotes.. \\\\ this might be a way to go.\n215: }{Laurens P. Stoop}\n216: \n217: %%%% PLAIN LANGUAGE SUMMARY\n218: \\section*{Plain Language Summary}\n219: This thesis describes the design, application and evaluation of metrics and measures aimed to support the integration of Energy \\& Climate modelling. aimed to capture relevant aspects of the weather and claimte f. Several new measurement techniques are presented as well as an Application-Specific Integrated Circuit (ASIC) designed for accurate measurement of flow velocity with matrix transducers.\n220: \n221: The influence of circuit topologies on the zero-flow performance of ultrasonic flow meters has been analyzed and an algorithm is presented to reduce the offset. With a linear transducer array, flow measurements have been performed via two different acoustic paths, demonstrating the ability to accurately measure flow with array transducers through a stainless-steel pipe wall. In order to improve signal quality, an ASIC has been designed that is able to drive and read-out 96 piezo transducer elements. The ASIC has been characterized electrically and flow measurements have been performed in combination with the linear transducer arrays.\n222: \n223: Several new techniques, enabled using transducer arrays, have also been explored. By tapering the amplitude of the transmit signals, spurious waves can be suppressed. An auto-calibration technique has been developed that uses additional acoustic measurements to estimate the diameter of the pipe and the speed of sound in the pipe wall and liquid. Finally, a simulation study has been performed to explore the possibility of exploiting the beam-steering capabilities of transducer arrays to measure flow velocity profiles by using measurements obtained via multiple acoustic paths.\n224: \n225: \n226: % Set part table of contents on a new page\n227: \\newpage\n228: \\chaptoc\n229: \n230: \n231: \n232: %% Include a chapter based on a paper\n233: \\input{MainMatter/paper1/paper1-main}\n234: \n235: \n236: \n237: %% Force clear pages to make it neat\n238: \\cleardoublepage\n239: \n240: \n241: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n242: %%%% ~~~~ PART X ~~~~ Conclusion\n243: %%\n244: %% - Introduction to conclusion\n245: %% - Scientific summary of chapters\n246: %% - Conclusion to RQ\n247: %% - General synthesis\n248: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n249: \n250: %%%% Part-title and properties\n251: %% Progress the thumbcounter\n252: \\stepcounter{thumbcounter}\n253: %% Colour to use for this part\n254: \\setcounter{colorcounter}{3}\n255: %% Name and label\n256: \\part[Concluding remarks]{Concluding Remarks}\n257: \\label{part:conclusion}\n258: \n259: \n260: %%%% Qoute\n261: \\epigraph{\n262: If you like quotes.. \\\\ this might be a way to go.\n263: }{Laurens P. Stoop}\n264: \n265: %%%% PLAIN LANGUAGE SUMMARY\n266: \\section*{Plain Language Summary}\n267: \\lipsum[1337]\n268: \n269: \n270: % Set part table of contents on a new page\n271: \\newpage\n272: \\chaptoc\n273: \n274: \n275: \n276: \n277: \n278: %% Add the actual conclusion (this can be split into scientific summaryu of chapter, conclusion & outlook)\n279: \\include{MainMatter/conclusions}\n280: \n281: \n282: %%%% Epilogue (opt)\n283: % \\include{BackMatter/epilogue}\n284: \n285: \n286: \n287: \n288: \n289: %% Force clear pages to make it neat\n290: \\cleardoublepage\n291: \n292: \n293: \n294: \n295: \n296: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n297: %%%% ~~~~ Part X+1 Appendices ~~~~\n298: %% i.e. the supplemantary information/material or appendices of the core chapters\n299: %%\n300: %% - References\n301: %% - SI of core chapters\n302: %%\n303: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n304: \n305: %%%% Appendix style settings\n306: %% Use Arabic numerals for the page numbers, but Alphanumeric numbering of the chapters.\n307: \\appendix\n308: \n309: %%%% Part-title and properties\n310: %% Progress the thumbcounter\n311: \\stepcounter{thumbcounter}\n312: %% Colour to use for this part\n313: \\setcounter{colorcounter}{4}\n314: %% Name and label\n315: \\part[Appendices]{Appendies}\n316: \\label{part:appendix}\n317: \n318: %%%% Part table of contents\n319: \\chaptoc\n320: \n321: \n322: \n323: \n324: %%%% References\n325: %% add to the general TOC\n326: \\addcontentsline{toc}{chapter}{References}\n327: %% add to the chapter TOC\n328: \\addcontentsline{chaptoc}{chapter}{References}\n329: %% add the references & fix the title style\n330: \\printbibliography[title={\\color{thumb\\arabic{thumbcounter}}References}]\n331: \n332: \n333: \n334: \n335: \n336: %% Appendix to a chapter\n337: \\include{BackMatter/appendix-example}\n338: \n339: \n340: \n341: \n342: \n343: %% Force clear pages to make it neat\n344: \\cleardoublepage\n345: \n346: \n347: \n348: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n349: %%%% ~~~~ PART X+2 BackMatter ~~~~\n350: %% i.e. the required components that are not part of the work presented\n351: %%\n352: %% - Samenvatting (Nederlands) [required if thesis in English]\n353: %% - List of Publications\n354: %% - Portfolio or courselist (required for some research schools)\n355: %% - Short Curriculum Vitae\n356: %% - Acknowledgements (opt)\n357: %%\n358: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n359: \n360: %%%% Part-title and properties\n361: %% Progress the thumbcounter\n362: \\stepcounter{thumbcounter}\n363: %% Colour to use for this part\n364: \\setcounter{colorcounter}{5}\n365: %% Name and label\n366: \\part[Backmatter]{Backmatter}\n367: \\label{part:backmatter}\n368: \n369: \n370: %%%% Qoute\n371: \\epigraph{\n372: A good manuscript is a submitted manuscript. A great manuscript is a published manuscript. A perfect manuscript is neither.\n373: }{Shit Academics Say} % on Twitter @AcademicsSay (Dec 7, 2021)}\n374: \n375: %% Part table of contents\n376: \\chaptoc\n377: \n378: \n379: \n380: \n381: %% Samenvatting\n382: \\include{Backmatter/samenvatting}\n383: \n384: \n385: %% Turn off thumb indices for unnumbered chapters.\n386: % - It's a style choice where you turn these off\n387: \\thumbfalse\n388: \n389: \n390: %%%% List of SIKS dissertations\n391: %% Required for SIKS\n392: \\include{BackMatter/siks}\n393: \n394: %% List of publications\n395: \\include{Backmatter/publications}\n396: \n397: \n398: %% Curriculum Vitae or About the author\n399: \\include{Backmatter/cv}\n400: \n401: %% Acknowledgements\n402: \\include{Backmatter/acknowledgements}\n403: \n404: %%%% Final quote (the quoute has to be an even page, use following commands to get it there)\n405: % \\cleardoublepage \\hbox{}\n406: \\newpage\n407: \\pagestyle{empty}\n408: %% page 1031, the grey havens, last two paragraphs\n409: \\dedication{\\epigraph{\n410: A good manuscript is a submitted manuscript. A great manuscript is a published manuscript. A perfect manuscript is neither.\n411: }{Shit Academics Say}} % on Twitter @AcademicsSay (Dec 7, 2021)}}\n412: \n413: \n414: \n415: \n416: %% include the BackCover\n417: \\include{BackMatter/backcover}\n418: \n419: %% Print an overview of the layout\n420: %\\layout\n421: \n422: \\end{document}\n423: \n424: \n425: \n```\n\nCompile log (tail):\n```\nr/tikz/librarie\ns/tikzlibraryarrows.code.tex\nFile: tikzlibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/libraries/pgflibraryarrows.\ncode.tex\nFile: pgflibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\\arrowsize=\\dimen384\n))\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarychains.code.tex\nFile: tikzlibrarychains.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarypositioning.code.tex\nFile: tikzlibrarypositioning.code.tex 2026-08-01 v3.1.12 (3.1.12)\n))\n\\fwidth=\\skip269\n\\c@thumbcounter=\\count619\n\\c@colorcounter=\\count620\n)\n\n! LaTeX Error: File `Frontmatter/hyphenations.tex' not found.\n\nType X to quit or to proceed,\nor enter new name. (Default extension: tex)\n\nEnter file name: \n! Emergency stop.\n \n \nl.48 \\input{Frontmatter/hyphenations}\n ^^M\n*** (cannot \\read from terminal in nonstop modes)\n\n \nHere is how much of TeX's memory you used:\n 67765 strings out of 467099\n 1626810 string characters out of 5408265\n 2608511 words of memory out of 5000000\n 96344 multiletter control sequences out of 15000+600000\n 632706 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,0n,118p,1490b,399s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "target": "\n<<<<<<< SEARCH\n\\input{Frontmatter/acronyms}\n=======\n\\input{FrontMatter/acronyms}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\input{Frontmatter/shorthand}\n=======\n\\input{FrontMatter/shorthand}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\input{Frontmatter/hyphenations}\n=======\n\\input{FrontMatter/hyphenations}\n>>>>>>> REPLACE\n", "id": "github_UtrechtUniversity__UU-dissertation-template__fa5bcd3", "doc": "github_multi/UtrechtUniversity__UU-dissertation-template__fa5bcd3", "mutation": "real", "source": "github", "repo": "UtrechtUniversity/UU-dissertation-template", "sha": "fa5bcd38c862d9dc72b914f55496679d3ea85d3c", "parent_sha": "51bcf9b47191e4ed7c731d297f4ce751d755fbb4", "license": "MIT", "url": "https://github.com/UtrechtUniversity/UU-dissertation-template/commit/fa5bcd38c862d9dc72b914f55496679d3ea85d3c", "changed_files": ["main.tex"], "original_root": "main.tex", "n_files": 21, "engine": "pdflatex", "error_category": "LaTeX Error: File 'X' not found.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 48: LaTeX Error: File `Frontmatter/hyphenations.tex' not found.\n\nProject files:\n- .gitignore\n- BackMatter/acknowledgements.tex\n- BackMatter/appendix-example.tex\n- BackMatter/backcover.tex\n- BackMatter/cv.tex\n- BackMatter/epilogue.tex\n- BackMatter/publications.tex\n- BackMatter/samenvatting.tex\n- BackMatter/siks.tex\n- CITATION.cff\n- FrontMatter/Cover/Cover.png\n- FrontMatter/Cover/CoverBackground.png\n- FrontMatter/Logos/nwo.eps\n- FrontMatter/Logos/sikskleur.eps\n- FrontMatter/acronyms.tex\n- FrontMatter/cover.tex\n- FrontMatter/hyphenations.tex\n- FrontMatter/preface.tex\n- FrontMatter/shorthand.tex\n- FrontMatter/title.tex\n- LICENSE\n- MainMatter/conclusions.tex\n- MainMatter/introduction.tex\n- MainMatter/paper1/paper1-main.tex\n- README.md\n- dissertation.cls\n- fonts/BookmanOldStyle-Bold.ttf\n- fonts/BookmanOldStyle-BoldItalic.ttf\n- fonts/BookmanOldStyle-Italic.ttf\n- fonts/BookmanOldStyle.ttf\n- fonts/CourierNewPS-BoldItalicMT.ttf\n- fonts/CourierNewPS-BoldMT.ttf\n- fonts/CourierNewPS-ItalicMT.ttf\n- fonts/CourierNewPSMT.ttf\n- fonts/Tahoma-Bold.ttf\n- fonts/Tahoma.ttf\n- main.tex\n- references.bib\n- stylesheet.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n2: %%%%\t\t~~~~ EDITOR'S NOTE ~~~~\n3: %%\n4: %% This is the PhD thesis of Laurens P. Stoop in LaTeX\n5: %%\n6: %% Inspired by the TU Delft dissertation class, but heavily modded.\n7: %%\n8: %% This document is inteded to be a style guide to a nice and fancy LaTeX thesis.\n9: %% - Comments are used to explain code (% sign)\n10: %% - Make it your own by selecting only the things you want\n11: %% - If in possible options you meet a couple of dots (...) more options are available (see documentation of pkg)\n12: %%\n13: %% Comments, remarks and more: email me at laurensstoop@protonmail.com\n14: %%\n15: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n16: \n17: \n18: %%%% documentclass: dissertation\n19: \\documentclass[]{dissertation}\n20: \n21: %%%% Title\n22: %% this title will be used everywhere\n23: \\title[or an approach from multiple fields]{A lightning start to a dissertations }\n24: \n25: \n26: %%%% Author\n27: %% this will be used everywhere\n28: \\author{Your First Names}{Lastname}\n29: \n30: \n31: \n32: \n33: \n34: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n35: %%%% ~~~~ PREAMBLE ~~~~\n36: %% - Stylesheet\n37: %% - hyphenations (opt)\n38: %% - shorthands (opt)\n39: %% - reference file\n40: %% - acronyms (opt)\n41: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n42: \n43: %%%% Stylesheet\n44: %% The thesis stylesheet, includes more package specifics\n45: \\input{stylesheet}\n46: \n47: %% (opt) Specific Hyphenations \n48: \\input{Frontmatter/hyphenations}\n49: \n50: %% (opt) Specific LaTeX shorthands\n51: \\input{Frontmatter/shorthand}\n52: \n53: %% Set the file with the references\n54: \\addbibresource{references.bib}\n55: \n56: %% (opt) Include the acronyms definitions\n57: \\input{Frontmatter/acronyms}\n58: \n59: \n60: \n61: \n62: %% N.B.: Strong use of \\include{file} to reduce compilation time in draft stage\n63: %% - tex-files of chapters are located in (sub-)folders (FrontMatter, MainMatter, BackMatter)\n64: \\begin{document}\n65: \n66: \n67: \n68: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n69: %%%% ~~~~ FrontMatter ~~~~\n70: %% i.e. everything before the introduction\n71: %%\n72: %% - Cover (opt as part of PDF)\n73: %% - Dedication (opt)\n74: %% - Titlepages\n75: %% - Table of Contents\n76: %% - Prologue (opt)\n77: %% - Glossary/List of acronyms (opt)\n78: %%\n79: %% N.B.: The order of these chapters, of the content is not 100% set in stone, after the cover and title-pages, there is some variation\n80: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n81: \n82: %% Use Arabic numerals for the page numbers of the chapters.\n83: \\pagenumbering{roman}\n84: \n85: \n86: %%%% Cover (opt in PDF) \n87: \\include{FrontMatter/cover}\n88: \n89: %%%% Titlepages\n90: \\include{FrontMatter/title}\n91: \n92: \n93: %%%% Table of Contents\n94: %% - Set depth of ToC at this point to 1\n95: %% - Start all counters after the ToC\n96: \\setcounter{tocdepth}{1}\n97: \\tableofcontents\n98: \\startcontents\n99: \n100: %%%% Acronym listing (opt)\n101: \\printacronyms\n102: \\addcontentsline{toc}{chapter}{Acronyms}\n103: \\setheader{Acronyms}\n104: \n105: %%% Prologue or preface (opt)\n106: \\include{FrontMatter/preface}\n107: \n108: \n109: \n110: \n111: \n112: %% Force clear pages to make it neat\n113: \\cleardoublepage\n114: \n115: \n116: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n117: %%%% ~~~~ MainMatter ~~~~\n118: %% i.e. the core chapters with an introduction and conclusion\n119: %%\n120: %% - Introduction\n121: %% - Core chapters\n122: %% - Conclusion\n123: %%\n124: %% Here parts are used to provide additional structure to the thesis, this is optional\n125: %%\n126: %% N.B.: No chapter TOC is used for the introduction\n127: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n128: \n129: %%%% Main Matter style settings\n130: %% Use Arabic numerals for the page numbers of the chapters.\n131: \\pagenumbering{arabic}\n132: \n133: %% Turn on thumb indices.\n134: \\thumbtrue\n135: \n136: \n137: \n138: \n139: \n140: \n141: \n142: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n143: %%%% ~~~~ PART I ~~~~ INTRODUCTION\n144: %%\n145: %% - Introduction\n146: %% - Context / theoretical background\n147: %% - Researhc questions / structure\n148: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n149: \n150: %%%% Part-title and properties\n151: %% Progress the thumbcounter\n152: \\stepcounter{thumbcounter}\n153: %% Colour to use for this part\n154: \\setcounter{colorcounter}{1}\n155: %% Name and label\n156: \\part[Introduction title in the TOC]{Introduction title on the chapter titlepage}\n157: \\label{part:intro}\n158: \n159: \n160: \n161: %%%% Qoute\n162: \\epigraph{\n163: You're only given a little spark of madness, and if you lose that... \\\\ you're nothing.\n164: }{Robin Williams}\n165: \n166: %%%% PLAIN LANGUAGE SUMMARY\n167: \\section*{Plain Language Summary}\n168: This thesis describes the design, application and evaluation of metrics and measures aimed to support stakeholders to achieve something awesome. \n169: \n170: We show off some cool findings, like the specifc method we used.\n171: \n172: Several new techniques have also been explored. \n173: This meant that we could provide more in-depth insight where it was needed. \n174: \n175: %%%% Part table of contents\n176: \\newpage\n177: \\chaptoc\n178: \n179: \n180: \n181: \n182: %%%% Introduction\n183: %% General introduction to the thesis\n184: \\include{MainMatter/introduction}\n185: \n186: \n187: \n188: %% Force clear pages to make it neat\n189: \\cleardoublepage\n190: \n191: \n192: \n193: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n194: %%%% ~~~~ PART II ~~~~ Methods and metrics\n195: %%\n196: %% - Paper 1: Properties of this LaTeX class\n197: %% - Paper 2: A filler chapter\n198: %% - Paper 3: Some filler chapter\n199: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n200: \n201: \n202: \n203: %%%% Part-title and properties\n204: %% Progress the thumbcounter\n205: \\stepcounter{thumbcounter}\n206: %% Colour to use for this part\n207: \\setcounter{colorcounter}{2}\n208: %% Name and label\n209: \\part[Properties of a dissertation class]{Properties of a dissertation class}\n210: \\label{part:second}\n211: \n212: %%%% Qoute\n213: \\epigraph{\n214: If you like quotes.. \\\\ this might be a way to go.\n215: }{Laurens P. Stoop}\n216: \n217: %%%% PLAIN LANGUAGE SUMMARY\n218: \\section*{Plain Language Summary}\n219: This thesis describes the design, application and evaluation of metrics and measures aimed to support the integration of Energy \\& Climate modelling. aimed to capture relevant aspects of the weather and claimte f. Several new measurement techniques are presented as well as an Application-Specific Integrated Circuit (ASIC) designed for accurate measurement of flow velocity with matrix transducers.\n220: \n221: The influence of circuit topologies on the zero-flow performance of ultrasonic flow meters has been analyzed and an algorithm is presented to reduce the offset. With a linear transducer array, flow measurements have been performed via two different acoustic paths, demonstrating the ability to accurately measure flow with array transducers through a stainless-steel pipe wall. In order to improve signal quality, an ASIC has been designed that is able to drive and read-out 96 piezo transducer elements. The ASIC has been characterized electrically and flow measurements have been performed in combination with the linear transducer arrays.\n222: \n223: Several new techniques, enabled using transducer arrays, have also been explored. By tapering the amplitude of the transmit signals, spurious waves can be suppressed. An auto-calibration technique has been developed that uses additional acoustic measurements to estimate the diameter of the pipe and the speed of sound in the pipe wall and liquid. Finally, a simulation study has been performed to explore the possibility of exploiting the beam-steering capabilities of transducer arrays to measure flow velocity profiles by using measurements obtained via multiple acoustic paths.\n224: \n225: \n226: % Set part table of contents on a new page\n227: \\newpage\n228: \\chaptoc\n229: \n230: \n231: \n232: %% Include a chapter based on a paper\n233: \\input{MainMatter/paper1/paper1-main}\n234: \n235: \n236: \n237: %% Force clear pages to make it neat\n238: \\cleardoublepage\n239: \n240: \n241: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n242: %%%% ~~~~ PART X ~~~~ Conclusion\n243: %%\n244: %% - Introduction to conclusion\n245: %% - Scientific summary of chapters\n246: %% - Conclusion to RQ\n247: %% - General synthesis\n248: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n249: \n250: %%%% Part-title and properties\n251: %% Progress the thumbcounter\n252: \\stepcounter{thumbcounter}\n253: %% Colour to use for this part\n254: \\setcounter{colorcounter}{3}\n255: %% Name and label\n256: \\part[Concluding remarks]{Concluding Remarks}\n257: \\label{part:conclusion}\n258: \n259: \n260: %%%% Qoute\n261: \\epigraph{\n262: If you like quotes.. \\\\ this might be a way to go.\n263: }{Laurens P. Stoop}\n264: \n265: %%%% PLAIN LANGUAGE SUMMARY\n266: \\section*{Plain Language Summary}\n267: \\lipsum[1337]\n268: \n269: \n270: % Set part table of contents on a new page\n271: \\newpage\n272: \\chaptoc\n273: \n274: \n275: \n276: \n277: \n278: %% Add the actual conclusion (this can be split into scientific summaryu of chapter, conclusion & outlook)\n279: \\include{MainMatter/conclusions}\n280: \n281: \n282: %%%% Epilogue (opt)\n283: % \\include{BackMatter/epilogue}\n284: \n285: \n286: \n287: \n288: \n289: %% Force clear pages to make it neat\n290: \\cleardoublepage\n291: \n292: \n293: \n294: \n295: \n296: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n297: %%%% ~~~~ Part X+1 Appendices ~~~~\n298: %% i.e. the supplemantary information/material or appendices of the core chapters\n299: %%\n300: %% - References\n301: %% - SI of core chapters\n302: %%\n303: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n304: \n305: %%%% Appendix style settings\n306: %% Use Arabic numerals for the page numbers, but Alphanumeric numbering of the chapters.\n307: \\appendix\n308: \n309: %%%% Part-title and properties\n310: %% Progress the thumbcounter\n311: \\stepcounter{thumbcounter}\n312: %% Colour to use for this part\n313: \\setcounter{colorcounter}{4}\n314: %% Name and label\n315: \\part[Appendices]{Appendies}\n316: \\label{part:appendix}\n317: \n318: %%%% Part table of contents\n319: \\chaptoc\n320: \n321: \n322: \n323: \n324: %%%% References\n325: %% add to the general TOC\n326: \\addcontentsline{toc}{chapter}{References}\n327: %% add to the chapter TOC\n328: \\addcontentsline{chaptoc}{chapter}{References}\n329: %% add the references & fix the title style\n330: \\printbibliography[title={\\color{thumb\\arabic{thumbcounter}}References}]\n331: \n332: \n333: \n334: \n335: \n336: %% Appendix to a chapter\n337: \\include{BackMatter/appendix-example}\n338: \n339: \n340: \n341: \n342: \n343: %% Force clear pages to make it neat\n344: \\cleardoublepage\n345: \n346: \n347: \n348: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n349: %%%% ~~~~ PART X+2 BackMatter ~~~~\n350: %% i.e. the required components that are not part of the work presented\n351: %%\n352: %% - Samenvatting (Nederlands) [required if thesis in English]\n353: %% - List of Publications\n354: %% - Portfolio or courselist (required for some research schools)\n355: %% - Short Curriculum Vitae\n356: %% - Acknowledgements (opt)\n357: %%\n358: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n359: \n360: %%%% Part-title and properties\n361: %% Progress the thumbcounter\n362: \\stepcounter{thumbcounter}\n363: %% Colour to use for this part\n364: \\setcounter{colorcounter}{5}\n365: %% Name and label\n366: \\part[Backmatter]{Backmatter}\n367: \\label{part:backmatter}\n368: \n369: \n370: %%%% Qoute\n371: \\epigraph{\n372: A good manuscript is a submitted manuscript. A great manuscript is a published manuscript. A perfect manuscript is neither.\n373: }{Shit Academics Say} % on Twitter @AcademicsSay (Dec 7, 2021)}\n374: \n375: %% Part table of contents\n376: \\chaptoc\n377: \n378: \n379: \n380: \n381: %% Samenvatting\n382: \\include{Backmatter/samenvatting}\n383: \n384: \n385: %% Turn off thumb indices for unnumbered chapters.\n386: % - It's a style choice where you turn these off\n387: \\thumbfalse\n388: \n389: \n390: %%%% List of SIKS dissertations\n391: %% Required for SIKS\n392: \\include{BackMatter/siks}\n393: \n394: %% List of publications\n395: \\include{Backmatter/publications}\n396: \n397: \n398: %% Curriculum Vitae or About the author\n399: \\include{Backmatter/cv}\n400: \n401: %% Acknowledgements\n402: \\include{Backmatter/acknowledgements}\n403: \n404: %%%% Final quote (the quoute has to be an even page, use following commands to get it there)\n405: % \\cleardoublepage \\hbox{}\n406: \\newpage\n407: \\pagestyle{empty}\n408: %% page 1031, the grey havens, last two paragraphs\n409: \\dedication{\\epigraph{\n410: A good manuscript is a submitted manuscript. A great manuscript is a published manuscript. A perfect manuscript is neither.\n411: }{Shit Academics Say}} % on Twitter @AcademicsSay (Dec 7, 2021)}}\n412: \n413: \n414: \n415: \n416: %% include the BackCover\n417: \\include{BackMatter/backcover}\n418: \n419: %% Print an overview of the layout\n420: %\\layout\n421: \n422: \\end{document}\n423: \n424: \n425: \n```\n\nCompile log (tail):\n```\nr/tikz/librarie\ns/tikzlibraryarrows.code.tex\nFile: tikzlibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/libraries/pgflibraryarrows.\ncode.tex\nFile: pgflibraryarrows.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\\arrowsize=\\dimen384\n))\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarychains.code.tex\nFile: tikzlibrarychains.code.tex 2026-08-01 v3.1.12 (3.1.12)\n\n(/usr/local/texlive/2026/texmf-dist/tex/generic/pgf/frontendlayer/tikz/librarie\ns/tikzlibrarypositioning.code.tex\nFile: tikzlibrarypositioning.code.tex 2026-08-01 v3.1.12 (3.1.12)\n))\n\\fwidth=\\skip269\n\\c@thumbcounter=\\count619\n\\c@colorcounter=\\count620\n)\n\n! LaTeX Error: File `Frontmatter/hyphenations.tex' not found.\n\nType X to quit or to proceed,\nor enter new name. (Default extension: tex)\n\nEnter file name: \n! Emergency stop.\n \n \nl.48 \\input{Frontmatter/hyphenations}\n ^^M\n*** (cannot \\read from terminal in nonstop modes)\n\n \nHere is how much of TeX's memory you used:\n 67765 strings out of 467099\n 1626810 string characters out of 5408265\n 2608511 words of memory out of 5000000\n 96344 multiletter control sequences out of 15000+600000\n 632706 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,0n,118p,1490b,399s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "repo_url": "https://github.com/UtrechtUniversity/UU-dissertation-template"} {"bib": false, "lane": "project", "file_edits": [{"file": "chapters/chap08-sec05.tex", "search": " \\item Learning rate: try 0.001, 0.0003, 0.0001\n\\end{enumerate}", "replace": " \\item Learning rate: try 0.001, 0.0003, 0.0001", "type": "real"}, {"file": "chapters/chap09-sec04.tex", "search": " \\item Replace FC layers with convolutions\n\\end{itemize}", "replace": " \\item Replace FC layers with convolutions", "type": "real"}, {"file": "chapters/chap14-sec04.tex", "search": " \\item Sensor data\n\\end{itemize}", "replace": " \\item Sensor data", "type": "real"}], "reported_file": "main.tex", "fix_files": ["chapters/chap08-sec05.tex", "chapters/chap09-sec04.tex", "chapters/chap14-sec04.tex"], "single_shot_visible": false, "error_lines": [{"line": 215, "text": "LaTeX Error: \\begin{itemize} on input line 27 ended by \\end{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": "blic/lm/lmmi12.pfb>\nOutput written on main.pdf (176 pages, 662931 bytes).\nPDF statistics:\n 2049 PDF objects out of 2073 (max. 8388607)\n 1801 compressed objects within 19 object streams\n 1099 named destinations out of 1200 (max. 500000)\n 55821 words of extra memory for PDF output out of 61914 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 215: LaTeX Error: \\begin{itemize} on input line 27 ended by \\end{document}.\n\nProject files:\n- .gitignore\n- Makefile\n- README.md\n- STRUCTURE.md\n- SUMMARY.txt\n- chapters/acknowledgements.tex\n- chapters/chap01-sec01.tex\n- chapters/chap01-sec02.tex\n- chapters/chap01-sec03.tex\n- chapters/chap01-sec04.tex\n- chapters/chap01-sec05.tex\n- chapters/chap01.tex\n- chapters/chap02-sec01.tex\n- chapters/chap02-sec02.tex\n- chapters/chap02-sec03.tex\n- chapters/chap02-sec04.tex\n- chapters/chap02-sec05.tex\n- chapters/chap02-sec06.tex\n- chapters/chap02.tex\n- chapters/chap03-sec01.tex\n- chapters/chap03-sec02.tex\n- chapters/chap03-sec03.tex\n- chapters/chap03-sec04.tex\n- chapters/chap03-sec05.tex\n- chapters/chap03.tex\n- chapters/chap04-sec01.tex\n- chapters/chap04-sec02.tex\n- chapters/chap04-sec03.tex\n- chapters/chap04-sec04.tex\n- chapters/chap04.tex\n- chapters/chap05-sec01.tex\n- chapters/chap05-sec02.tex\n- chapters/chap05-sec03.tex\n- chapters/chap05-sec04.tex\n- chapters/chap05-sec05.tex\n- chapters/chap05-sec06.tex\n- chapters/chap05.tex\n- chapters/chap06-sec01.tex\n- chapters/chap06-sec02.tex\n- chapters/chap06-sec03.tex\n- ... (85 more)\n\nOther project files (edit them with ):\n\n`chapters/chap16.tex` (full file, line-numbered):\n```\n1: % Chapter 16: Structured Probabilistic Models for Deep Learning\n2: \n3: \\chapter{Structured Probabilistic Models for Deep Learning}\n4: \\label{chap:structured-probabilistic-models}\n5: \n6: This chapter covers graphical models and their integration with deep learning.\n7: \n8: \n9: \\input{chapters/chap16-sec01}\n10: \\input{chapters/chap16-sec02}\n11: \\input{chapters/chap16-sec03}\n12: \n```\n\n`chapters/chap17.tex` (full file, line-numbered):\n```\n1: % Chapter 17: Monte Carlo Methods\n2: \n3: \\chapter{Monte Carlo Methods}\n4: \\label{chap:monte-carlo}\n5: \n6: This chapter introduces sampling-based approaches for probabilistic inference and learning.\n7: \n8: \n9: \\input{chapters/chap17-sec01}\n10: \\input{chapters/chap17-sec02}\n11: \\input{chapters/chap17-sec03}\n12: \\input{chapters/chap17-sec04}\n13: \n```\n\n`chapters/chap18.tex` (full file, line-numbered):\n```\n1: % Chapter 18: Confronting the Partition Function\n2: \n3: \\chapter{Confronting the Partition Function}\n4: \\label{chap:partition-function}\n5: \n6: This chapter addresses computational challenges in probabilistic models arising from intractable partition functions.\n7: \n8: \n9: \\input{chapters/chap18-sec01}\n10: \\input{chapters/chap18-sec02}\n11: \\input{chapters/chap18-sec03}\n12: \\input{chapters/chap18-sec04}\n13: \n```\n\n`chapters/chap19.tex` (full file, line-numbered):\n```\n1: % Chapter 19: Approximate Inference\n2: \n3: \\chapter{Approximate Inference}\n4: \\label{chap:approximate-inference}\n5: \n6: This chapter explores methods for tractable inference in complex probabilistic models.\n7: \n8: \n9: \\input{chapters/chap19-sec01}\n10: \\input{chapters/chap19-sec02}\n11: \\input{chapters/chap19-sec03}\n12: \\input{chapters/chap19-sec04}\n13: \n```\n\n`chapters/chap20.tex` (full file, line-numbered):\n```\n1: % Chapter 20: Deep Generative Models\n2: \n3: \\chapter{Deep Generative Models}\n4: \\label{chap:deep-generative-models}\n5: \n6: This chapter examines modern approaches to generating new data samples using deep learning.\n7: \n8: \n9: \\input{chapters/chap20-sec01}\n10: \\input{chapters/chap20-sec02}\n11: \\input{chapters/chap20-sec03}\n12: \\input{chapters/chap20-sec04}\n13: \\input{chapters/chap20-sec05}\n14: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Deep Learning 101 - Main Book File\n2: % Author: Vu Hung Nguyen\n3: % License: Creative Commons License Version 4.0 (CC BY 4.0)\n4: \n5: \\documentclass[10pt,a5paper,twoside,openright]{book}\n6: \n7: % --- Page Layout ---\n8: \\usepackage[a5paper, top=2cm, bottom=2cm, inner=1.8cm, outer=1.5cm]{geometry}\n9: \\usepackage{setspace}\n10: \\onehalfspacing\n11: \n12: % --- Essential Packages ---\n13: \\usepackage[utf8]{inputenc}\n14: \\usepackage[T1]{fontenc}\n15: \\usepackage{lmodern}\n16: \\usepackage{microtype}\n17: \n18: % --- Math Packages ---\n19: \\usepackage{amsmath,amssymb,amsfonts,amsthm}\n20: \\usepackage{mathtools}\n21: \n22: % --- Graphics and Colors ---\n23: \\usepackage{graphicx}\n24: \\usepackage{xcolor}\n25: \\usepackage{tikz}\n26: \n27: % --- Tables and Lists ---\n28: \\usepackage{booktabs}\n29: \\usepackage{array}\n30: \\usepackage{enumitem}\n31: \n32: % --- References and Links ---\n33: \\usepackage{hyperref}\n34: \\hypersetup{\n35: colorlinks=true,\n36: linkcolor=blue!60!black,\n37: citecolor=green!60!black,\n38: urlcolor=blue!60!black,\n39: bookmarksopen=true,\n40: }\n41: \\usepackage[capitalise,noabbrev]{cleveref}\n42: \n43: % --- Bibliography ---\n44: \\usepackage[backend=biber,style=alphabetic,sorting=nyt]{biblatex}\n45: \\addbibresource{references.bib}\n46: \n47: % --- Theorem Environments ---\n48: \\newtheorem{theorem}{Theorem}[chapter]\n49: \\newtheorem{lemma}[theorem]{Lemma}\n50: \\newtheorem{proposition}[theorem]{Proposition}\n51: \\newtheorem{corollary}[theorem]{Corollary}\n52: \\theoremstyle{definition}\n53: \\newtheorem{definition}[theorem]{Definition}\n54: \\newtheorem{example}[theorem]{Example}\n55: \\theoremstyle{remark}\n56: \\newtheorem{remark}[theorem]{Remark}\n57: \n58: % --- Custom Commands ---\n59: \\newcommand{\\vect}[1]{\\boldsymbol{#1}}\n60: \\newcommand{\\mat}[1]{\\boldsymbol{#1}}\n61: \\newcommand{\\transpose}{^\\top}\n62: \\newcommand{\\norm}[1]{\\left\\lVert#1\\right\\rVert}\n63: \\newcommand{\\abs}[1]{\\left|#1\\right|}\n64: \n65: % --- Title and Author Information ---\n66: \\title{\\textbf{Deep Learning 101}}\n67: \\author{Vu Hung Nguyen}\n68: \\date{\\today}\n69: \n70: % ======================================================================\n71: % BEGIN DOCUMENT\n72: % ======================================================================\n73: \n74: \\begin{document}\n75: \n76: % --- Front Matter ---\n77: \\frontmatter\n78: \n79: % Title Page\n80: \\begin{titlepage}\n81: \\centering\n82: \\vspace*{2cm}\n83: \n84: {\\Huge\\bfseries Deep Learning 101\\par}\n85: \\vspace{1.5cm}\n86: \n87: {\\Large Vu Hung Nguyen\\par}\n88: \\vspace{2cm}\n89: \n90: {\\large A Comprehensive Guide to\\\\\n91: Deep Learning Theory and Practice\\par}\n92: \n93: \\vfill\n94: \n95: {\\large \\today\\par}\n96: \\vspace{0.5cm}\n97: \n98: {\\small License: Creative Commons Attribution 4.0 International (CC BY 4.0)\\par}\n99: \\end{titlepage}\n100: \n101: % Copyright Page\n102: \\newpage\n103: \\thispagestyle{empty}\n104: \\vspace*{\\fill}\n105: \\begin{flushleft}\n106: \\textbf{Deep Learning 101}\\\\\n107: Copyright \\copyright~\\the\\year~Vu Hung Nguyen\\\\[0.5em]\n108: This work is licensed under the Creative Commons Attribution 4.0 International License.\\\\\n109: To view a copy of this license, visit \\url{http://creativecommons.org/licenses/by/4.0/}\\\\[0.5em]\n110: First Edition: \\today\n111: \\end{flushleft}\n112: \\vspace*{\\fill}\n113: \\clearpage\n114: \n115: % Table of Contents\n116: \\tableofcontents\n117: \n118: % Acknowledgements\n119: \\chapter*{Acknowledgements}\n120: \\addcontentsline{toc}{chapter}{Acknowledgements}\n121: \\input{chapters/acknowledgements}\n122: \n123: % Notation\n124: \\chapter*{Notation}\n125: \\addcontentsline{toc}{chapter}{Notation}\n126: \\input{chapters/notation}\n127: \n128: % --- Main Matter ---\n129: \\mainmatter\n130: \n131: % Chapter 1: Introduction\n132: \\include{chapters/chap01}\n133: \n134: % ======================================================================\n135: % PART I: Basic Math and Machine Learning Foundation\n136: % ======================================================================\n137: \\part{Basic Math and Machine Learning Foundation}\n138: \n139: % Chapter 2: Linear Algebra\n140: \\include{chapters/chap02}\n141: \n142: % Chapter 3: Probability and Information Theory\n143: \\include{chapters/chap03}\n144: \n145: % Chapter 4: Numerical Computation\n146: \\include{chapters/chap04}\n147: \n148: % Chapter 5: Classical Machine Learning Algorithms\n149: \\include{chapters/chap05}\n150: \n151: % ======================================================================\n152: % PART II: Practical Deep Networks\n153: % ======================================================================\n154: \\part{Practical Deep Networks}\n155: \n156: % Chapter 6: Deep Feedforward Networks\n157: \\include{chapters/chap06}\n158: \n159: % Chapter 7: Regularization for Deep Learning\n160: \\include{chapters/chap07}\n161: \n162: % Chapter 8: Optimization for Training Deep Models\n163: \\include{chapters/chap08}\n164: \n165: % Chapter 9: Convolutional Networks\n166: \\include{chapters/chap09}\n167: \n168: % Chapter 10: Sequence Modeling: Recurrent and Recursive Nets\n169: \\include{chapters/chap10}\n170: \n171: % Chapter 11: Practical Methodology\n172: \\include{chapters/chap11}\n173: \n174: % Chapter 12: Applications\n175: \\include{chapters/chap12}\n176: \n177: % ======================================================================\n178: % PART III: Deep Learning Research\n179: % ======================================================================\n180: \\part{Deep Learning Research}\n181: \n182: % Chapter 13: Linear Factor Models\n183: \\include{chapters/chap13}\n184: \n185: % Chapter 14: Autoencoders\n186: \\include{chapters/chap14}\n187: \n188: % Chapter 15: Representation Learning\n189: \\include{chapters/chap15}\n190: \n191: % Chapter 16: Structured Probabilistic Models for Deep Learning\n192: \\include{chapters/chap16}\n193: \n194: % Chapter 17: Monte Carlo Methods\n195: \\include{chapters/chap17}\n196: \n197: % Chapter 18: Confronting the Partition Function\n198: \\include{chapters/chap18}\n199: \n200: % Chapter 19: Approximate Inference\n201: \\include{chapters/chap19}\n202: \n203: % Chapter 20: Deep Generative Models\n204: \\include{chapters/chap20}\n205: \n206: % --- Back Matter ---\n207: \\backmatter\n208: \n209: % Bibliography\n210: \\printbibliography[heading=bibintoc,title={Bibliography}]\n211: \n212: % Index (if needed in future)\n213: % \\printindex\n214: \n215: \\end{document}\n216: \n```\n\nCompile log (tail):\n```\nblic/lm/lmmi12.pfb>\nOutput written on main.pdf (176 pages, 662931 bytes).\nPDF statistics:\n 2049 PDF objects out of 2073 (max. 8388607)\n 1801 compressed objects within 19 object streams\n 1099 named destinations out of 1200 (max. 500000)\n 55821 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\item Sensor data\n=======\n \\item Sensor data\n\\end{itemize}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\item Replace FC layers with convolutions\n=======\n \\item Replace FC layers with convolutions\n\\end{itemize}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\item Learning rate: try 0.001, 0.0003, 0.0001\n=======\n \\item Learning rate: try 0.001, 0.0003, 0.0001\n\\end{enumerate}\n>>>>>>> REPLACE\n", "id": "github_vuhung16au__LaTeX-Research-Toolkit__6a2005a", "doc": "github_multi/vuhung16au__LaTeX-Research-Toolkit__6a2005a", "mutation": "real", "source": "github", "repo": "vuhung16au/LaTeX-Research-Toolkit", "sha": "6a2005a8dfa52677acd4ca50581d7b689487ec27", "parent_sha": "32f3215764ae2a31287578ce6228b349f87f5202", "license": "MIT", "url": "https://github.com/vuhung16au/LaTeX-Research-Toolkit/commit/6a2005a8dfa52677acd4ca50581d7b689487ec27", "changed_files": ["chapters/chap08-sec05.tex", "chapters/chap09-sec04.tex", "chapters/chap14-sec04.tex"], "original_root": "main.tex", "n_files": 120, "engine": "pdflatex", "error_category": "LaTeX Error: \\CS{X} on input line N ended by \\CS{X}.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 215: LaTeX Error: \\begin{itemize} on input line 27 ended by \\end{document}.\n\nProject files:\n- .gitignore\n- Makefile\n- README.md\n- STRUCTURE.md\n- SUMMARY.txt\n- chapters/acknowledgements.tex\n- chapters/chap01-sec01.tex\n- chapters/chap01-sec02.tex\n- chapters/chap01-sec03.tex\n- chapters/chap01-sec04.tex\n- chapters/chap01-sec05.tex\n- chapters/chap01.tex\n- chapters/chap02-sec01.tex\n- chapters/chap02-sec02.tex\n- chapters/chap02-sec03.tex\n- chapters/chap02-sec04.tex\n- chapters/chap02-sec05.tex\n- chapters/chap02-sec06.tex\n- chapters/chap02.tex\n- chapters/chap03-sec01.tex\n- chapters/chap03-sec02.tex\n- chapters/chap03-sec03.tex\n- chapters/chap03-sec04.tex\n- chapters/chap03-sec05.tex\n- chapters/chap03.tex\n- chapters/chap04-sec01.tex\n- chapters/chap04-sec02.tex\n- chapters/chap04-sec03.tex\n- chapters/chap04-sec04.tex\n- chapters/chap04.tex\n- chapters/chap05-sec01.tex\n- chapters/chap05-sec02.tex\n- chapters/chap05-sec03.tex\n- chapters/chap05-sec04.tex\n- chapters/chap05-sec05.tex\n- chapters/chap05-sec06.tex\n- chapters/chap05.tex\n- chapters/chap06-sec01.tex\n- chapters/chap06-sec02.tex\n- chapters/chap06-sec03.tex\n- ... (85 more)\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Deep Learning 101 - Main Book File\n2: % Author: Vu Hung Nguyen\n3: % License: Creative Commons License Version 4.0 (CC BY 4.0)\n4: \n5: \\documentclass[10pt,a5paper,twoside,openright]{book}\n6: \n7: % --- Page Layout ---\n8: \\usepackage[a5paper, top=2cm, bottom=2cm, inner=1.8cm, outer=1.5cm]{geometry}\n9: \\usepackage{setspace}\n10: \\onehalfspacing\n11: \n12: % --- Essential Packages ---\n13: \\usepackage[utf8]{inputenc}\n14: \\usepackage[T1]{fontenc}\n15: \\usepackage{lmodern}\n16: \\usepackage{microtype}\n17: \n18: % --- Math Packages ---\n19: \\usepackage{amsmath,amssymb,amsfonts,amsthm}\n20: \\usepackage{mathtools}\n21: \n22: % --- Graphics and Colors ---\n23: \\usepackage{graphicx}\n24: \\usepackage{xcolor}\n25: \\usepackage{tikz}\n26: \n27: % --- Tables and Lists ---\n28: \\usepackage{booktabs}\n29: \\usepackage{array}\n30: \\usepackage{enumitem}\n31: \n32: % --- References and Links ---\n33: \\usepackage{hyperref}\n34: \\hypersetup{\n35: colorlinks=true,\n36: linkcolor=blue!60!black,\n37: citecolor=green!60!black,\n38: urlcolor=blue!60!black,\n39: bookmarksopen=true,\n40: }\n41: \\usepackage[capitalise,noabbrev]{cleveref}\n42: \n43: % --- Bibliography ---\n44: \\usepackage[backend=biber,style=alphabetic,sorting=nyt]{biblatex}\n45: \\addbibresource{references.bib}\n46: \n47: % --- Theorem Environments ---\n48: \\newtheorem{theorem}{Theorem}[chapter]\n49: \\newtheorem{lemma}[theorem]{Lemma}\n50: \\newtheorem{proposition}[theorem]{Proposition}\n51: \\newtheorem{corollary}[theorem]{Corollary}\n52: \\theoremstyle{definition}\n53: \\newtheorem{definition}[theorem]{Definition}\n54: \\newtheorem{example}[theorem]{Example}\n55: \\theoremstyle{remark}\n56: \\newtheorem{remark}[theorem]{Remark}\n57: \n58: % --- Custom Commands ---\n59: \\newcommand{\\vect}[1]{\\boldsymbol{#1}}\n60: \\newcommand{\\mat}[1]{\\boldsymbol{#1}}\n61: \\newcommand{\\transpose}{^\\top}\n62: \\newcommand{\\norm}[1]{\\left\\lVert#1\\right\\rVert}\n63: \\newcommand{\\abs}[1]{\\left|#1\\right|}\n64: \n65: % --- Title and Author Information ---\n66: \\title{\\textbf{Deep Learning 101}}\n67: \\author{Vu Hung Nguyen}\n68: \\date{\\today}\n69: \n70: % ======================================================================\n71: % BEGIN DOCUMENT\n72: % ======================================================================\n73: \n74: \\begin{document}\n75: \n76: % --- Front Matter ---\n77: \\frontmatter\n78: \n79: % Title Page\n80: \\begin{titlepage}\n81: \\centering\n82: \\vspace*{2cm}\n83: \n84: {\\Huge\\bfseries Deep Learning 101\\par}\n85: \\vspace{1.5cm}\n86: \n87: {\\Large Vu Hung Nguyen\\par}\n88: \\vspace{2cm}\n89: \n90: {\\large A Comprehensive Guide to\\\\\n91: Deep Learning Theory and Practice\\par}\n92: \n93: \\vfill\n94: \n95: {\\large \\today\\par}\n96: \\vspace{0.5cm}\n97: \n98: {\\small License: Creative Commons Attribution 4.0 International (CC BY 4.0)\\par}\n99: \\end{titlepage}\n100: \n101: % Copyright Page\n102: \\newpage\n103: \\thispagestyle{empty}\n104: \\vspace*{\\fill}\n105: \\begin{flushleft}\n106: \\textbf{Deep Learning 101}\\\\\n107: Copyright \\copyright~\\the\\year~Vu Hung Nguyen\\\\[0.5em]\n108: This work is licensed under the Creative Commons Attribution 4.0 International License.\\\\\n109: To view a copy of this license, visit \\url{http://creativecommons.org/licenses/by/4.0/}\\\\[0.5em]\n110: First Edition: \\today\n111: \\end{flushleft}\n112: \\vspace*{\\fill}\n113: \\clearpage\n114: \n115: % Table of Contents\n116: \\tableofcontents\n117: \n118: % Acknowledgements\n119: \\chapter*{Acknowledgements}\n120: \\addcontentsline{toc}{chapter}{Acknowledgements}\n121: \\input{chapters/acknowledgements}\n122: \n123: % Notation\n124: \\chapter*{Notation}\n125: \\addcontentsline{toc}{chapter}{Notation}\n126: \\input{chapters/notation}\n127: \n128: % --- Main Matter ---\n129: \\mainmatter\n130: \n131: % Chapter 1: Introduction\n132: \\include{chapters/chap01}\n133: \n134: % ======================================================================\n135: % PART I: Basic Math and Machine Learning Foundation\n136: % ======================================================================\n137: \\part{Basic Math and Machine Learning Foundation}\n138: \n139: % Chapter 2: Linear Algebra\n140: \\include{chapters/chap02}\n141: \n142: % Chapter 3: Probability and Information Theory\n143: \\include{chapters/chap03}\n144: \n145: % Chapter 4: Numerical Computation\n146: \\include{chapters/chap04}\n147: \n148: % Chapter 5: Classical Machine Learning Algorithms\n149: \\include{chapters/chap05}\n150: \n151: % ======================================================================\n152: % PART II: Practical Deep Networks\n153: % ======================================================================\n154: \\part{Practical Deep Networks}\n155: \n156: % Chapter 6: Deep Feedforward Networks\n157: \\include{chapters/chap06}\n158: \n159: % Chapter 7: Regularization for Deep Learning\n160: \\include{chapters/chap07}\n161: \n162: % Chapter 8: Optimization for Training Deep Models\n163: \\include{chapters/chap08}\n164: \n165: % Chapter 9: Convolutional Networks\n166: \\include{chapters/chap09}\n167: \n168: % Chapter 10: Sequence Modeling: Recurrent and Recursive Nets\n169: \\include{chapters/chap10}\n170: \n171: % Chapter 11: Practical Methodology\n172: \\include{chapters/chap11}\n173: \n174: % Chapter 12: Applications\n175: \\include{chapters/chap12}\n176: \n177: % ======================================================================\n178: % PART III: Deep Learning Research\n179: % ======================================================================\n180: \\part{Deep Learning Research}\n181: \n182: % Chapter 13: Linear Factor Models\n183: \\include{chapters/chap13}\n184: \n185: % Chapter 14: Autoencoders\n186: \\include{chapters/chap14}\n187: \n188: % Chapter 15: Representation Learning\n189: \\include{chapters/chap15}\n190: \n191: % Chapter 16: Structured Probabilistic Models for Deep Learning\n192: \\include{chapters/chap16}\n193: \n194: % Chapter 17: Monte Carlo Methods\n195: \\include{chapters/chap17}\n196: \n197: % Chapter 18: Confronting the Partition Function\n198: \\include{chapters/chap18}\n199: \n200: % Chapter 19: Approximate Inference\n201: \\include{chapters/chap19}\n202: \n203: % Chapter 20: Deep Generative Models\n204: \\include{chapters/chap20}\n205: \n206: % --- Back Matter ---\n207: \\backmatter\n208: \n209: % Bibliography\n210: \\printbibliography[heading=bibintoc,title={Bibliography}]\n211: \n212: % Index (if needed in future)\n213: % \\printindex\n214: \n215: \\end{document}\n216: \n```\n\nCompile log (tail):\n```\nblic/lm/lmmi12.pfb>\nOutput written on main.pdf (176 pages, 662931 bytes).\nPDF statistics:\n 2049 PDF objects out of 2073 (max. 8388607)\n 1801 compressed objects within 19 object streams\n 1099 named destinations out of 1200 (max. 500000)\n 55821 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "repo_url": "https://github.com/vuhung16au/LaTeX-Research-Toolkit"} {"bib": false, "lane": "project", "file_edits": [{"file": "lainnya/lembar-pengesahan.tex", "search": " \\vspace{10ex}", "replace": " \\vspace{10$ex}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["lainnya/lembar-pengesahan.tex"], "single_shot_visible": true, "error_lines": [{"line": 36, "text": "Illegal unit of measure (pt inserted).", "file": "main.tex", "fileLabel": null}], "log_tail": "5 strings out of 467099\n 399620 string characters out of 5408265\n 1441164 words of memory out of 5000000\n 51771 multiletter control sequences out of 15000+600000\n 670322 words of font info for 126 fonts, out of 8000000 for 9000\n 1144 hyphenation exceptions out of 8191\n 74i,12n,83p,1181b,5052s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (22 pages, 290460 bytes).\nPDF statistics:\n 206 PDF objects out of 1000 (max. 8388607)\n 153 compressed objects within 2 object streams\n 51 named destinations out of 1000 (max. 500000)\n 11 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 36: Illegal unit of measure (pt inserted).\n\nProject files:\n- .github/dependabot.yml\n- .github/workflows/build.yml\n- .github/workflows/deploy.yml\n- .gitignore\n- LICENSE\n- README.md\n- gambar/blueprint.jpg\n- konten/1-pendahuluan.tex\n- konten/2-tinjauan-pustaka.tex\n- konten/3-metodologi.tex\n- konten/4-lainnya.tex\n- lainnya/abstrak-en.tex\n- lainnya/abstrak.tex\n- lainnya/lembar-pengesahan-en.tex\n- lainnya/lembar-pengesahan.tex\n- main.tex\n- pustaka/pustaka.bib\n- pustaka/tanda-hubung.tex\n- sampul/gambar/sampul-dalam.png\n- sampul/gambar/sampul-luar-tipis.png\n- sampul/gambar/sampul-luar.png\n- sampul/konten-en.tex\n- sampul/konten-id.tex\n- sampul/sampul-luar.tex\n\nOther project files (edit them with ):\n\n`pustaka/tanda-hubung.tex` (full file, line-numbered):\n```\n1: % Tambahkan format tanda hubung yang benar di sini\n2: \\hyphenation{\n3: ro-ket\n4: me-ngem-bang-kan\n5: per-hi-tu-ngan\n6: }\n```\n\n`pustaka/pustaka.bib` (full file, line-numbered):\n```\n1: Untuk setiap referensi, baris pertama (Newton1687) merupakan label dan baris-baris berikutnya\n2: merupakan atribut dari referensi yang akan digunakan. Umumnya, format referensi berikut sudah\n3: disediakan oleh penyedia sumber referensi secara online dan bisa langsung digunakan di sini.\n4: \n5: Lihat https://www.bibtex.com/g/bibtex-format/ untuk informasi lebih lanjut mengenai format\n6: BibTex yang digunakan pada file ini.\n7: \n8: @article{Newton1687,\n9: author={I. {Newton}},\n10: journal={Philosophiæ Naturalis Principia Mathematica},\n11: title={Axioms or Laws of Motion},\n12: year={1687}}\n13: \n14: @misc{SpaceXBlueprint,\n15: title={Space X Blueprint},\n16: year=2021,\n17: url={https://id.pinterest.com/pin/344032859037191430/},\n18: urldate={2021-01-26}}\n19: \n```\n\n`sampul/sampul-luar.tex` (full file, line-numbered):\n```\n1: \\AddToShipoutPictureBG*{\n2: \\AtPageLowerLeft{\n3: % Ubah nilai berikut jika posisi horizontal background tidak sesuai\n4: \\hspace{-3.25mm}\n5: \n6: % Ubah nilai berikut jika posisi vertikal background tidak sesuai\n7: \\raisebox{0mm}{\n8: \\includegraphics[width=\\paperwidth,height=\\paperheight]{sampul/gambar/sampul-luar-tipis.png}\n9: }\n10: }\n11: }\n12: \n13: % Menyembunyikan nomor halaman\n14: \\thispagestyle{empty}\n15: \n16: % Pengaturan margin untuk menyesuaikan konten sampul\n17: \\newgeometry{\n18: top=65mm,\n19: left=30mm,\n20: right=30mm,\n21: bottom=20mm\n22: }\n23: \n24: \\begin{flushleft}\n25: \n26: % Pemilihan font sans serif\n27: \\sffamily\n28: \n29: % Pemilihan font bold\n30: \\fontseries{bx}\n31: \\selectfont\n32: \\begin{spacing}{1.5}\n33: \\input{\\covercontents}\n34: \\end{spacing}\n35: \n36: \\end{flushleft}\n37: \n38: \\restoregeometry\n39: \n```\n\n`lainnya/lembar-pengesahan.tex` (full file, line-numbered):\n```\n1: \\chapter*{LEMBAR PENGESAHAN}\n2: \n3: % Menyembunyikan nomor halaman\n4: \\thispagestyle{empty}\n5: \n6: \\begin{center}\n7: % Ubah kalimat berikut dengan judul tugas akhir\n8: \\textbf{KALKULASI ENERGI PADA ROKET LUAR ANGKASA BERBASIS \\emph{ANTI-GRAVITASI}}\n9: \\end{center}\n10: \n11: \\begingroup\n12: % Pemilihan font ukuran small\n13: \\small\n14: \n15: \\begin{center}\n16: % Ubah kalimat berikut dengan pernyataan untuk lembar pengesahan\n17: \\textbf{PROPOSAL TUGAS AKHIR} \\\\\n18: Diajukan untuk memenuhi salah satu syarat memperoleh gelar\n19: Sarjana Teknik pada \n20: Program Studi S-1 Teknik Dirgantara \\\\\n21: Departemen Teknik Dirgantara \\\\\n22: Fakultas Teknik Dirgantara \\\\\n23: Institut Teknologi Sepuluh Nopember\n24: \\end{center}\n25: \n26: \\begin{center}\n27: % Ubah kalimat berikut dengan nama dan NRP mahasiswa\n28: Oleh: \\textbf{Elon Reeve Musk} \\\\\n29: NRP. 0123 20 4000 0001\n30: \\end{center}\n31: \n32: \\begin{center}\n33: Disetujui oleh Tim Penguji Proposal Tugas Akhir:\n34: \\end{center}\n35: \n36: \\vspace{10ex}\n37: \n38: \\begingroup\n39: % Menghilangkan padding\n40: \\setlength{\\tabcolsep}{0pt}\n41: \n42: \\noindent\n43: \\begin{tabularx}{\\textwidth}{X c}\n44: % Ubah kalimat-kalimat berikut dengan nama dan NIP dosen pembimbing pertama\n45: Nikola Tesla, S.T., M.T. & \\\\\n46: NIP: 18560710 194301 1 001 & (Pembimbing)\\\\\n47: & \\\\ \n48: & \\\\ \n49: & \\\\ \n50: % Ubah kalimat-kalimat berikut dengan nama dan NIP dosen pembimbing kedua\n51: Wernher von Braun, S.T., M.T. & \\\\\n52: NIP: 19230323 197706 1 001 & (Ko-Pembimbing)\\\\\n53: & \\\\ & \\\\\n54: & \\\\\n55: & \\\\\n56: % Ubah kalimat-kalimat berikut dengan nama dan NIP dosen penguji pertama\n57: Dr. Galileo Galilei, S.T., M.Sc. & \\\\\n58: NIP: 15640215 164201 1 001 & (Penguji)\\\\\n59: & \\\\ & \\\\\n60: & \\\\\n61: & \\\\\n62: % Ubah kalimat-kalimat berikut dengan nama dan NIP dosen penguji kedua\n63: Friedrich Nietzsche, S.T., M.Sc. & \\\\\n64: NIP: 18441015 190008 1 001 & (Penguji II)\\\\\n65: & \\\\ & \\\\ \n66: & \\\\\n67: & \\\\\n68: % Ubah kalimat-kalimat berikut dengan nama dan NIP dosen penguji ketiga\n69: Alan Turing, ST., MT. & \\\\\n70: NIP: 19120623 195406 1 001 & (Penguji III)\\\\\n71: \\end{tabularx}\n72: \\endgroup\n73: \n74: \\vspace{4ex}\n75: \n76: \\begin{center}\n77: % Ubah text dibawah menjadi tempat dan tanggal\n78: \\textbf{SURABAYA} \\\\\n79: \\textbf{Mei, 2077}\n80: \\end{center}\n81: \\endgroup\n82: \n```\n\n`lainnya/abstrak.tex` (full file, line-numbered):\n```\n1: \\chapter*{ABSTRAK}\n2: \\begin{center}\n3: \\large\n4: \\textbf{KALKULASI ENERGI PADA ROKET LUAR ANGKASA BERBASIS \\emph{ANTI-GRAVITASI}}\n5: \\end{center}\n6: \\addcontentsline{toc}{chapter}{ABSTRAK}\n7: % Menyembunyikan nomor halaman\n8: \\thispagestyle{empty}\n9: \n10: \\begin{flushleft}\n11: \\setlength{\\tabcolsep}{0pt}\n12: \\bfseries\n13: \\begin{tabular}{ll@{\\hspace{6pt}}l}\n14: Nama Mahasiswa / NRP&:& Elon Reeve Musk / 0123204000001\\\\\n15: Departemen&:& Teknik Dirgantara FTD - ITS\\\\\n16: Dosen Pembimbing&:& 1. Nikola Tesla, S.T., M.T.\\\\\n17: & & 2. Wernher von Braun, S.T., M.T.\\\\\n18: \\end{tabular}\n19: \\vspace{4ex}\n20: \\end{flushleft}\n21: \\textbf{Abstrak}\n22: \n23: % Isi Abstrak\n24: Abstrak harus berisi seratus hingga dua ratus kata. \\lipsum[1]\n25: \n26: \\vspace{2ex}\n27: \\noindent\n28: \\textbf{Kata Kunci: \\emph{Roket, Anti-gravitasi, Meong}}\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Pengaturan ukuran teks dan bentuk halaman dua sisi\n2: \\documentclass[12pt]{book}\n3: \n4: % Pengaturan ukuran halaman dan margin\n5: \\usepackage[a4paper,top=30mm,left=30mm,right=20mm,bottom=25mm]{geometry}\n6: \n7: % Pengaturan ukuran spasi\n8: \\usepackage[singlespacing]{setspace}\n9: \n10: % Pengaturan caption untuk tabel\n11: \\usepackage{caption}\n12: \n13: % Judul dokumen\n14: \\title{Proposal Tugas Akhir ITS}\n15: \\author{Musk, Elon Reeve}\n16: \n17: % Pengaturan detail pada file PDF\n18: \\usepackage[pdfauthor={\\@author},bookmarksnumbered,pdfborder={0 0 0}]{hyperref}\n19: \n20: \n21: % Pengaturan ukuran indentasi\n22: \\setlength{\\parindent}{2em}\n23: \n24: % Package lainnya\n25: \\usepackage{changepage}\n26: \\usepackage{etoolbox} % Mengubah fungsi default\n27: \n28: % Pengaturan jenis karakter\n29: \\usepackage[utf8]{inputenc}\n30: \n31: \\usepackage[style=apa, backend=biber]{biblatex}\n32: \\usepackage{enumitem} % Pembuatan list\n33: \\usepackage{lipsum} % Pembuatan template kalimat\n34: \\usepackage{graphicx} % Input gambar\n35: \\usepackage{longtable} % Pembuatan tabel\n36: \\usepackage[table,xcdraw]{xcolor} % Pewarnaan tabel\n37: \\usepackage{eso-pic} % Untuk menggunakan background image di halaman\n38: \\usepackage{txfonts} % Font times\n39: \\usepackage{changepage} % Pembuatan teks kolom\n40: \\usepackage{multicol} % Pembuatan kolom ganda\n41: \\usepackage{multirow} % Pembuatan baris ganda\n42: \\usepackage{tabularx} % Untuk mengatur kolom, seperti grid pada CSS\n43: \\usepackage{wrapfig}\n44: \n45: % Pengaturan format daftar isi, daftar gambar, dan daftar tabel\n46: \\usepackage[titles]{tocloft}\n47: \\setlength{\\cftsecindent}{2em}\n48: \\setlength{\\cftsubsecindent}{2em}\n49: \\setlength{\\cftbeforechapskip}{1.5ex}\n50: \\setlength{\\cftbeforesecskip}{1.5ex}\n51: \\setlength{\\cftbeforetoctitleskip}{0cm}\n52: \\setlength{\\cftbeforeloftitleskip}{0cm}\n53: \\setlength{\\cftbeforelottitleskip}{0cm}\n54: \\renewcommand{\\cfttoctitlefont}{\\hfill\\Large\\bfseries} % command untuk membuat heading bold dan besar\n55: \\renewcommand{\\cftaftertoctitle}{\\hfill}\n56: \\renewcommand{\\cftloftitlefont}{\\hfill\\Large\\bfseries}\n57: \\renewcommand{\\cftafterloftitle}{\\hfill}\n58: \\renewcommand{\\cftlottitlefont}{\\hfill\\Large\\bfseries}\n59: \\renewcommand{\\cftafterlottitle}{\\hfill}\n60: \n61: % Definisi untuk \"Hati ini sengaja dikosongkan\"\n62: \\patchcmd{\\cleardoublepage}{\\hbox{}}{\n63: \\thispagestyle{empty}\n64: \\vspace*{\\fill}\n65: \\begin{center}\\textit{[Halaman ini sengaja dikosongkan]}\\end{center}\n66: \\vfill}{}{}\n67: \n68: % Pengaturan penomoran halaman\n69: \\usepackage{fancyhdr}\n70: \\fancyhf{}\n71: \\renewcommand{\\headrulewidth}{0pt}\n72: \\pagestyle{fancy}\n73: \\fancyfoot[C,CO]{\\thepage}\n74: \\patchcmd{\\chapter}{plain}{fancy}{}{}\n75: \\patchcmd{\\chapter}{empty}{plain}{}{}\n76: \n77: % Pengaturan format judul bab\n78: \\usepackage{titlesec}\n79: \\renewcommand{\\thesection}{\\thechapter.\\arabic{section}}\n80: \\titleformat{\\chapter}[hang]{\\centering\\bfseries\\large}{BAB\\ \\arabic{chapter}\\ }{0ex}{\\vspace{0ex}\\centering}\n81: \\titleformat*{\\section}{\\large\\bfseries}\n82: \\titleformat*{\\subsection}{\\normalsize\\bfseries}\n83: \\titlespacing{\\chapter}{0ex}{0ex}{4ex}\n84: \\titlespacing{\\section}{0ex}{1ex}{0ex}\n85: \\titlespacing{\\subsection}{0ex}{0.5ex}{0ex}\n86: \\titlespacing{\\subsubsection}{0ex}{0.5ex}{0ex}\n87: \\setcounter{secnumdepth}{3} % Untuk memberi penomoran pada \\subsubsection\n88: \n89: \\counterwithin{figure}{chapter}\n90: \\counterwithin{table}{chapter}\n91: \n92: % Mengganti figure dan table menjadi gambar dan tabel\n93: \\renewcommand{\\figurename}{Gambar}\n94: \\renewcommand{\\tablename}{Tabel}\n95: \n96: \\input{pustaka/tanda-hubung.tex}\n97: \n98: % Menambahkan resource daftar pustaka\n99: \\addbibresource{pustaka/pustaka.bib}\n100: \n101: % Isi keseluruhan dokumen\n102: \\begin{document}\n103: % Nomor halaman pembuka dimulai dari sini\n104: \\pagenumbering{roman}\n105: \n106: % Atur ulang penomoran halaman\n107: \\setcounter{page}{1}\n108: \n109: % Sampul Bahasa Indonesia\n110: \\newcommand\\covercontents{sampul/konten-id.tex}\n111: \\input{sampul/sampul-luar.tex}\n112: \n113: % Lembar pengesahan\n114: \\input{lainnya/lembar-pengesahan.tex}\n115: \\newpage\n116: \n117: % Abstrak\n118: \\input{lainnya/abstrak.tex}\n119: \\newpage\n120: \n121: \\input{lainnya/abstrak-en.tex}\n122: \\newpage\n123: \n124: \\begin{spacing}{1.5}\n125: % Daftar isi\n126: \\renewcommand*\\contentsname{DAFTAR ISI}\n127: \\addcontentsline{toc}{chapter}{\\contentsname}\n128: \\tableofcontents\n129: \\newpage\n130: \n131: % Daftar gambar\n132: \\renewcommand*\\listfigurename{DAFTAR GAMBAR}\n133: \\addcontentsline{toc}{chapter}{\\listfigurename}\n134: \\listoffigures\n135: \\newpage\n136: \n137: % Daftar tabel\n138: \\renewcommand*\\listtablename{DAFTAR TABEL}\n139: \\addcontentsline{toc}{chapter}{\\listtablename}\n140: \\listoftables\n141: \\newpage\n142: \\end{spacing}\n143: \n144: % Nomor halaman isi dimulai dari sini\n145: \\pagenumbering{arabic}\n146: \n147: % Konten pendahuluan\n148: \\input{konten/1-pendahuluan.tex}\n149: \\newpage\n150: \n151: % Konten tinjauan pustaka\n152: \\input{konten/2-tinjauan-pustaka.tex}\n153: \\newpage\n154: \n155: % Konten metodologi\n156: \\input{konten/3-metodologi.tex}\n157: \\newpage\n158: \n159: % Konten lainnya\n160: \\input{konten/4-lainnya.tex}\n161: \\newpage\n162: \n163: % Daftar pustaka\n164: \\chapter*{DAFTAR PUSTAKA}\n165: \\addcontentsline{toc}{chapter}{DAFTAR PUSTAKA}\n166: \\renewcommand\\refname{}\n167: \\vspace{2ex}\n168: \\renewcommand{\\bibname}{}\n169: \\begingroup\n170: \\def\\chapter*#1{}\n171: \\printbibliography\n172: \\endgroup\n173: \n174: \n175: \\end{document}\n176: \n```\n\nCompile log (tail):\n```\n5 strings out of 467099\n 399620 string characters out of 5408265\n 1441164 words of memory out of 5000000\n 51771 multiletter control sequences out of 15000+600000\n 670322 words of font info for 126 fonts, out of 8000000 for 9000\n 1144 hyphenation exceptions out of 8191\n 74i,12n,83p,1181b,5052s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (22 pages, 290460 bytes).\nPDF statistics:\n 206 PDF objects out of 1000 (max. 8388607)\n 153 compressed objects within 2 object streams\n 51 named destinations out of 1000 (max. 500000)\n 11 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\vspace{10$ex}\n=======\n \\vspace{10ex}\n>>>>>>> REPLACE\n", "id": "github2_marcelaritonang__TA-5024211061-RIANCO-SOLANABLOCKCHAIN__ff67363", "doc": "github_multi2/marcelaritonang__TA-5024211061-RIANCO-SOLANABLOCKCHAIN__ff67363", "mutation": "real", "source": "github", "repo": "marcelaritonang/TA-5024211061-RIANCO-SOLANABLOCKCHAIN", "sha": "ff67363a2bdd370ea64946ad3dd48de9c740259a", "parent_sha": "988787724141876c49f4dfc79e588bf654a42224", "license": "MIT", "url": "https://github.com/marcelaritonang/TA-5024211061-RIANCO-SOLANABLOCKCHAIN/commit/ff67363a2bdd370ea64946ad3dd48de9c740259a", "changed_files": ["lainnya/lembar-pengesahan.tex"], "original_root": "main.tex", "n_files": 14, "engine": "pdflatex", "error_category": "Illegal unit of measure (pt inserted).", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 36: Illegal unit of measure (pt inserted).\n\nProject files:\n- .github/dependabot.yml\n- .github/workflows/build.yml\n- .github/workflows/deploy.yml\n- .gitignore\n- LICENSE\n- README.md\n- gambar/blueprint.jpg\n- konten/1-pendahuluan.tex\n- konten/2-tinjauan-pustaka.tex\n- konten/3-metodologi.tex\n- konten/4-lainnya.tex\n- lainnya/abstrak-en.tex\n- lainnya/abstrak.tex\n- lainnya/lembar-pengesahan-en.tex\n- lainnya/lembar-pengesahan.tex\n- main.tex\n- pustaka/pustaka.bib\n- pustaka/tanda-hubung.tex\n- sampul/gambar/sampul-dalam.png\n- sampul/gambar/sampul-luar-tipis.png\n- sampul/gambar/sampul-luar.png\n- sampul/konten-en.tex\n- sampul/konten-id.tex\n- sampul/sampul-luar.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Pengaturan ukuran teks dan bentuk halaman dua sisi\n2: \\documentclass[12pt]{book}\n3: \n4: % Pengaturan ukuran halaman dan margin\n5: \\usepackage[a4paper,top=30mm,left=30mm,right=20mm,bottom=25mm]{geometry}\n6: \n7: % Pengaturan ukuran spasi\n8: \\usepackage[singlespacing]{setspace}\n9: \n10: % Pengaturan caption untuk tabel\n11: \\usepackage{caption}\n12: \n13: % Judul dokumen\n14: \\title{Proposal Tugas Akhir ITS}\n15: \\author{Musk, Elon Reeve}\n16: \n17: % Pengaturan detail pada file PDF\n18: \\usepackage[pdfauthor={\\@author},bookmarksnumbered,pdfborder={0 0 0}]{hyperref}\n19: \n20: \n21: % Pengaturan ukuran indentasi\n22: \\setlength{\\parindent}{2em}\n23: \n24: % Package lainnya\n25: \\usepackage{changepage}\n26: \\usepackage{etoolbox} % Mengubah fungsi default\n27: \n28: % Pengaturan jenis karakter\n29: \\usepackage[utf8]{inputenc}\n30: \n31: \\usepackage[style=apa, backend=biber]{biblatex}\n32: \\usepackage{enumitem} % Pembuatan list\n33: \\usepackage{lipsum} % Pembuatan template kalimat\n34: \\usepackage{graphicx} % Input gambar\n35: \\usepackage{longtable} % Pembuatan tabel\n36: \\usepackage[table,xcdraw]{xcolor} % Pewarnaan tabel\n37: \\usepackage{eso-pic} % Untuk menggunakan background image di halaman\n38: \\usepackage{txfonts} % Font times\n39: \\usepackage{changepage} % Pembuatan teks kolom\n40: \\usepackage{multicol} % Pembuatan kolom ganda\n41: \\usepackage{multirow} % Pembuatan baris ganda\n42: \\usepackage{tabularx} % Untuk mengatur kolom, seperti grid pada CSS\n43: \\usepackage{wrapfig}\n44: \n45: % Pengaturan format daftar isi, daftar gambar, dan daftar tabel\n46: \\usepackage[titles]{tocloft}\n47: \\setlength{\\cftsecindent}{2em}\n48: \\setlength{\\cftsubsecindent}{2em}\n49: \\setlength{\\cftbeforechapskip}{1.5ex}\n50: \\setlength{\\cftbeforesecskip}{1.5ex}\n51: \\setlength{\\cftbeforetoctitleskip}{0cm}\n52: \\setlength{\\cftbeforeloftitleskip}{0cm}\n53: \\setlength{\\cftbeforelottitleskip}{0cm}\n54: \\renewcommand{\\cfttoctitlefont}{\\hfill\\Large\\bfseries} % command untuk membuat heading bold dan besar\n55: \\renewcommand{\\cftaftertoctitle}{\\hfill}\n56: \\renewcommand{\\cftloftitlefont}{\\hfill\\Large\\bfseries}\n57: \\renewcommand{\\cftafterloftitle}{\\hfill}\n58: \\renewcommand{\\cftlottitlefont}{\\hfill\\Large\\bfseries}\n59: \\renewcommand{\\cftafterlottitle}{\\hfill}\n60: \n61: % Definisi untuk \"Hati ini sengaja dikosongkan\"\n62: \\patchcmd{\\cleardoublepage}{\\hbox{}}{\n63: \\thispagestyle{empty}\n64: \\vspace*{\\fill}\n65: \\begin{center}\\textit{[Halaman ini sengaja dikosongkan]}\\end{center}\n66: \\vfill}{}{}\n67: \n68: % Pengaturan penomoran halaman\n69: \\usepackage{fancyhdr}\n70: \\fancyhf{}\n71: \\renewcommand{\\headrulewidth}{0pt}\n72: \\pagestyle{fancy}\n73: \\fancyfoot[C,CO]{\\thepage}\n74: \\patchcmd{\\chapter}{plain}{fancy}{}{}\n75: \\patchcmd{\\chapter}{empty}{plain}{}{}\n76: \n77: % Pengaturan format judul bab\n78: \\usepackage{titlesec}\n79: \\renewcommand{\\thesection}{\\thechapter.\\arabic{section}}\n80: \\titleformat{\\chapter}[hang]{\\centering\\bfseries\\large}{BAB\\ \\arabic{chapter}\\ }{0ex}{\\vspace{0ex}\\centering}\n81: \\titleformat*{\\section}{\\large\\bfseries}\n82: \\titleformat*{\\subsection}{\\normalsize\\bfseries}\n83: \\titlespacing{\\chapter}{0ex}{0ex}{4ex}\n84: \\titlespacing{\\section}{0ex}{1ex}{0ex}\n85: \\titlespacing{\\subsection}{0ex}{0.5ex}{0ex}\n86: \\titlespacing{\\subsubsection}{0ex}{0.5ex}{0ex}\n87: \\setcounter{secnumdepth}{3} % Untuk memberi penomoran pada \\subsubsection\n88: \n89: \\counterwithin{figure}{chapter}\n90: \\counterwithin{table}{chapter}\n91: \n92: % Mengganti figure dan table menjadi gambar dan tabel\n93: \\renewcommand{\\figurename}{Gambar}\n94: \\renewcommand{\\tablename}{Tabel}\n95: \n96: \\input{pustaka/tanda-hubung.tex}\n97: \n98: % Menambahkan resource daftar pustaka\n99: \\addbibresource{pustaka/pustaka.bib}\n100: \n101: % Isi keseluruhan dokumen\n102: \\begin{document}\n103: % Nomor halaman pembuka dimulai dari sini\n104: \\pagenumbering{roman}\n105: \n106: % Atur ulang penomoran halaman\n107: \\setcounter{page}{1}\n108: \n109: % Sampul Bahasa Indonesia\n110: \\newcommand\\covercontents{sampul/konten-id.tex}\n111: \\input{sampul/sampul-luar.tex}\n112: \n113: % Lembar pengesahan\n114: \\input{lainnya/lembar-pengesahan.tex}\n115: \\newpage\n116: \n117: % Abstrak\n118: \\input{lainnya/abstrak.tex}\n119: \\newpage\n120: \n121: \\input{lainnya/abstrak-en.tex}\n122: \\newpage\n123: \n124: \\begin{spacing}{1.5}\n125: % Daftar isi\n126: \\renewcommand*\\contentsname{DAFTAR ISI}\n127: \\addcontentsline{toc}{chapter}{\\contentsname}\n128: \\tableofcontents\n129: \\newpage\n130: \n131: % Daftar gambar\n132: \\renewcommand*\\listfigurename{DAFTAR GAMBAR}\n133: \\addcontentsline{toc}{chapter}{\\listfigurename}\n134: \\listoffigures\n135: \\newpage\n136: \n137: % Daftar tabel\n138: \\renewcommand*\\listtablename{DAFTAR TABEL}\n139: \\addcontentsline{toc}{chapter}{\\listtablename}\n140: \\listoftables\n141: \\newpage\n142: \\end{spacing}\n143: \n144: % Nomor halaman isi dimulai dari sini\n145: \\pagenumbering{arabic}\n146: \n147: % Konten pendahuluan\n148: \\input{konten/1-pendahuluan.tex}\n149: \\newpage\n150: \n151: % Konten tinjauan pustaka\n152: \\input{konten/2-tinjauan-pustaka.tex}\n153: \\newpage\n154: \n155: % Konten metodologi\n156: \\input{konten/3-metodologi.tex}\n157: \\newpage\n158: \n159: % Konten lainnya\n160: \\input{konten/4-lainnya.tex}\n161: \\newpage\n162: \n163: % Daftar pustaka\n164: \\chapter*{DAFTAR PUSTAKA}\n165: \\addcontentsline{toc}{chapter}{DAFTAR PUSTAKA}\n166: \\renewcommand\\refname{}\n167: \\vspace{2ex}\n168: \\renewcommand{\\bibname}{}\n169: \\begingroup\n170: \\def\\chapter*#1{}\n171: \\printbibliography\n172: \\endgroup\n173: \n174: \n175: \\end{document}\n176: \n```\n\nCompile log (tail):\n```\n5 strings out of 467099\n 399620 string characters out of 5408265\n 1441164 words of memory out of 5000000\n 51771 multiletter control sequences out of 15000+600000\n 670322 words of font info for 126 fonts, out of 8000000 for 9000\n 1144 hyphenation exceptions out of 8191\n 74i,12n,83p,1181b,5052s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (22 pages, 290460 bytes).\nPDF statistics:\n 206 PDF objects out of 1000 (max. 8388607)\n 153 compressed objects within 2 object streams\n 51 named destinations out of 1000 (max. 500000)\n 11 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/marcelaritonang/TA-5024211061-RIANCO-SOLANABLOCKCHAIN"} {"bib": false, "lane": "project", "file_edits": [{"file": "imported_document.tex", "search": "Questo e' il contenuto del documento imported\\textunderscore document.tex", "replace": "\\begin{document}\nQuesto e' il contenuto del documento imported\\textunderscore document.tex\n\\end{document}", "type": "real"}], "reported_file": "imported_document.tex", "fix_files": ["imported_document.tex"], "single_shot_visible": true, "error_lines": [{"line": 1, "text": "LaTeX Error: Can be used only in preamble.", "file": "imported_document.tex", "fileLabel": "imported_document.tex"}], "log_tail": "\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 28040 strings out of 467099\n 530677 string characters out of 5408265\n 935216 words of memory out of 5000000\n 56907 multiletter control sequences out of 15000+600000\n 637062 words of font info for 74 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 102i,10n,107p,497b,609s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (18 pages, 231608 bytes).\nPDF statistics:\n 170 PDF objects out of 1000 (max. 8388607)\n 127 compressed objects within 2 object streams\n 40 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `imported_document.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- imported_document.tex line 1: LaTeX Error: Can be used only in preamble.\n\nProject files:\n- img/frog.jpg\n- imported_document.tex\n- main.tex\n- refs.bib\n\nOther project files (edit them with ):\n\n`main.tex` (head and lines matching the log, line-numbered):\n```\n1: \\documentclass[12pt,a4paper,twoside]{book}\n2: \n3: \n4: \\usepackage[utf8]{inputenc}\n5: \\usepackage[a4paper,inner=3.5cm,outer=2.5cm]{geometry}\n6: \n7: \\usepackage[titletoc,title,toc,page]{appendix}\n8: \\usepackage{verbatim}\n9: \\usepackage{placeins}\n10: \\usepackage{listings}\n11: \\usepackage{hyperref}\n12: \\usepackage[italian]{babel}\n13: \\usepackage{tikz}\n14: \\usepackage{parskip}\n15: \n16: \\usepackage{graphicx}\n17: \\usepackage{blindtext}\n18: \\usepackage{chngcntr}\n19: \\counterwithin{table}{chapter}\n20: \n21: \\usepackage{newlfont}\n22: \\usepackage{fancyhdr}\n23: \\usepackage{indentfirst}\n24: \\usepackage[utf8]{inputenc}\n25: \\usepackage{float}\n26: \\usepackage{hyperref}\n27: \\usepackage[capitalize,noabbrev]{cleveref}\n28: \\usepackage{soul}\n29: \\usepackage[font=footnotesize,labelfont=bf]{caption}\n30: \n```\n\nCurrent content of `imported_document.tex` (full file, line-numbered):\n```\n1: \\begin{document}\n2: Questo e' il contenuto del documento imported\\textunderscore document.tex\n3: \\end{document}\n4: \n```\n\nCompile log (tail):\n```\n\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 28040 strings out of 467099\n 530677 string characters out of 5408265\n 935216 words of memory out of 5000000\n 56907 multiletter control sequences out of 15000+600000\n 637062 words of font info for 74 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 102i,10n,107p,497b,609s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (18 pages, 231608 bytes).\nPDF statistics:\n 170 PDF objects out of 1000 (max. 8388607)\n 127 compressed objects within 2 object streams\n 40 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\begin{document}\nQuesto e' il contenuto del documento imported\\textunderscore document.tex\n\\end{document}\n=======\nQuesto e' il contenuto del documento imported\\textunderscore document.tex\n>>>>>>> REPLACE\n", "id": "github2_cartabinaria__latex-thesis__ceeaf2d", "doc": "github_multi2/cartabinaria__latex-thesis__ceeaf2d", "mutation": "real", "source": "github", "repo": "cartabinaria/latex-thesis", "sha": "ceeaf2de2195678a787201e2af2decd5420202a5", "parent_sha": "160f354809af0ba0bbe03c56b137913f4810fdbc", "license": "AGPL-3.0", "url": "https://github.com/cartabinaria/latex-thesis/commit/ceeaf2de2195678a787201e2af2decd5420202a5", "changed_files": ["imported_document.tex"], "original_root": "tesi.tex", "n_files": 3, "engine": "pdflatex", "error_category": "LaTeX Error: Can be used only in preamble.", "prompt_v1": "The LaTeX file `imported_document.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- imported_document.tex line 1: LaTeX Error: Can be used only in preamble.\n\nProject files:\n- img/frog.jpg\n- imported_document.tex\n- main.tex\n- refs.bib\n\nCurrent content of `imported_document.tex` (full file, line-numbered):\n```\n1: \\begin{document}\n2: Questo e' il contenuto del documento imported\\textunderscore document.tex\n3: \\end{document}\n4: \n```\n\nCompile log (tail):\n```\n\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 28040 strings out of 467099\n 530677 string characters out of 5408265\n 935216 words of memory out of 5000000\n 56907 multiletter control sequences out of 15000+600000\n 637062 words of font info for 74 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 102i,10n,107p,497b,609s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (18 pages, 231608 bytes).\nPDF statistics:\n 170 PDF objects out of 1000 (max. 8388607)\n 127 compressed objects within 2 object streams\n 40 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/cartabinaria/latex-thesis"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[latin1]{inputenc}\n%\\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8", "replace": "% \\usepackage[latin1]{inputenc}\n\\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 92, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 93, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 111, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 131, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 133, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 174, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 205, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 223, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 226, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 257, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 284, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}, {"line": 323, "text": "LaTeX Error: Unicode character � (U+FFFD)", "file": "main.tex", "fileLabel": null}], "log_tail": "143 hyphenation exceptions out of 8191\n 75i,11n,79p,541b,630s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>\nOutput written on main.pdf (24 pages, 162802 bytes).\nPDF statistics:\n 227 PDF objects out of 1000 (max. 8388607)\n 171 compressed objects within 2 object streams\n 57 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 92: LaTeX Error: Unicode character � (U+FFFD)\n- line 93: LaTeX Error: Unicode character � (U+FFFD)\n- line 111: LaTeX Error: Unicode character � (U+FFFD)\n- line 131: LaTeX Error: Unicode character � (U+FFFD)\n- line 133: LaTeX Error: Unicode character � (U+FFFD)\n- line 174: LaTeX Error: Unicode character � (U+FFFD)\n- line 205: LaTeX Error: Unicode character � (U+FFFD)\n- line 223: LaTeX Error: Unicode character � (U+FFFD)\n- line 226: LaTeX Error: Unicode character � (U+FFFD)\n- line 257: LaTeX Error: Unicode character � (U+FFFD)\n- line 284: LaTeX Error: Unicode character � (U+FFFD)\n- line 323: LaTeX Error: Unicode character � (U+FFFD)\n\nProject files:\n- frontespizio.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`frontespizio.tex` (full file, line-numbered):\n```\n1: \\begin{titlepage}\n2: \\begin{center}\n3: {{\\Large{\\textsc{Alma Mater Studiorum $\\cdot$ Universit\\`a di\n4: Bologna}}}} \\rule[0.1cm]{15.8cm}{0.1mm}\n5: \\rule[0.5cm]{15.8cm}{0.6mm}\n6: {\\small{\\bf SCUOLA DI SCIENZE\\\\\n7: Corso di Laurea in Nome corso di Laurea }}\n8: \\end{center}\n9: \\vspace{15mm}\n10: \\begin{center}\n11: {\\LARGE{\\bf TITOLO}}\\\\\n12: \\vspace{3mm}\n13: {\\LARGE{\\bf DELLA}}\\\\\n14: \\vspace{3mm}\n15: {\\LARGE{\\bf TESI}}\\\\\n16: \\end{center}\n17: \\vspace{40mm}\n18: \\par\n19: \\noindent\n20: \\begin{minipage}[t]{0.47\\textwidth}\n21: {\\large{\\bf Relatore:\\\\\n22: Chiar.mo Prof.\\\\\n23: NOME RELATORE}}\n24: \\end{minipage}\n25: \\hfill\n26: \\begin{minipage}[t]{0.47\\textwidth}\\raggedleft\n27: {\\large{\\bf Presentata da:\\\\\n28: NOME LAUREANDO}}\n29: \\end{minipage}\n30: \\vspace{20mm}\n31: \\begin{center}\n32: {\\large{\\bf Sessione\\\\%inserire il numero della sessione in cui ci si laurea\n33: Anno Accademico }}%inserire l'anno accademico a cui si � iscritti\n34: \\end{center}\n35: \\end{titlepage}\n36: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%12pt: grandezza caratter\n2: %a4paper: formato a4\n3: %openright: apre i capitoli a destra\n4: %twoside: serve per fare un\n5: % documento fronteretro\n6: %report: stile tesi (oppure book)\n7: \\documentclass[12pt,a4paper,openright,twoside]{report}\n8: %\n9: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per scrivere in italiano\n10: \\usepackage[italian]{babel}\n11: %\n12: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per accettare i caratteri\n13: % digitati da tastiera come � �\n14: % si pu� usare anche\n15: % \\usepackage[T1]{fontenc}\n16: % per� con questa libreria\n17: % il tempo di compilazione\n18: % aumenta\n19: % \\usepackage[latin1]{inputenc}\n20: \\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8\n21: \n22: %\n23: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per impostare il documento\n24: \\usepackage{fancyhdr}\n25: %\n26: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per avere l'indentazione\n27: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% all'inizio dei capitoli, ...\n28: \\usepackage{indentfirst}\n29: %\n30: %%%%%%%%%libreria per mostrare le etichette\n31: %\\usepackage{showkeys}\n32: %\n33: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per inserire grafici\n34: \\usepackage{graphicx}\n35: %\n36: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per utilizzare font\n37: % particolari ad esempio\n38: % \\textsc{}\n39: \\usepackage{newlfont}\n40: %\n41: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%librerie matematiche\n42: \\usepackage{amssymb}\n43: \\usepackage{amsmath}\n44: \\usepackage{latexsym}\n45: \\usepackage{amsthm}\n46: %\n47: \\oddsidemargin=30pt \\evensidemargin=20pt%impostano i margini\n48: \\hyphenation{sil-la-ba-zio-ne pa-ren-te-si}%serve per la sillabazione: tra parentesi\n49: \t\t\t\t\t %vanno inserite come nell'esempio le parole\n50: %\t\t\t\t\t %che latex non riesce a tagliare nel modo giusto andando a capo\n51: \n52: %\n53: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%comandi per l'impostazione\n54: % della pagina, vedi il manuale\n55: % della libreria fancyhdr\n56: % per ulteriori delucidazioni\n57: \\pagestyle{fancy}\\addtolength{\\headwidth}{20pt}\n58: \\renewcommand{\\chaptermark}[1]{\\markboth{\\thechapter.\\ #1}{}}\n59: \\renewcommand{\\sectionmark}[1]{\\markright{\\thesection \\ #1}{}}\n60: \\rhead[\\fancyplain{}{\\bfseries\\leftmark}]{\\fancyplain{}{\\bfseries\\thepage}}\n61: \\cfoot{}\n62: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n63: \\linespread{1.3} %comando per impostare l'interlinea\n64: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%definisce nuovi comandi\n65: \n66: % % Bibliografia alternativa\n67: % \\usepackage{natbib}\n68: % \\bibliographystyle{alpha}\n69: % \\setcitestyle{super,open={[},close={]}}\n70: \n71: \\usepackage[titletoc,title,toc,page]{appendix} %appendici\n72: \\usepackage{pdfpages} %embed di pdf\n73: \\usepackage{lscape} %modalit� landscape\n74: \\usepackage{float}%posizionamento elementi\n75: \\usepackage{hyperref}%url\n76: \n77: \n78: \\begin{document}\n79: \\input{frontespizio.tex}\n80: \\begin{titlepage} %crea un ambiente libero da vincoli\n81: % di margini e grandezza caratteri:\n82: % si pu� modificare quello che si\n83: % vuole, tanto fuori da questo\n84: % ambiente tutto viene ristabilit\n85: %\n86: \\thispagestyle{empty} %elimina il numero della pagina\n87: \\topmargin=6.5cm %imposta il margina superiore a 6.5cm\n88: \\raggedleft %incolonna la scrittura a destra\n89: \\large %aumenta la grandezza del carattere\n90: % a 14pt\n91: \\em %emfatizza (corsivo) il carattere\n92: Questa � la \\textsc{Dedica}:\\\\\n93: ognuno pu� scrivere quello che vuole, \\\\\n94: anche nulla \\ldots %\\ldots lascia tre puntini\n95: \\newpage %va in una pagina nuov\n96: %\n97: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n98: \\clearpage{\\pagestyle{empty}\\cleardoublepage}%non numera l'ultima pagina sinistra\n99: \\end{titlepage}\n100: \\pagenumbering{roman} %serve per mettere i numeri romani\n101: \\chapter*{Introduzione} %crea l'introduzione (un capitolo\n102: % non numerato)\n103: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n104: \\rhead[\\fancyplain{}{\\bfseries\n105: INTRODUZIONE}]{\\fancyplain{}{\\bfseries\\thepage}}\n106: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n107: INTRODUZIONE}}\n108: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Introduzione\n109: % nell'indice\n110: \\addcontentsline{toc}{chapter}{Introduzione}\n111: Questa � l'introduzione.\n112: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n113: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n114: \\tableofcontents %crea l'indice\n115: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n116: \\rhead[\\fancyplain{}{\\bfseries\\leftmark}]{\\fancyplain{}{\\bfseries\\thepage}}\n117: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n118: INDICE}}\n119: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n120: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n121: \\listoffigures %crea l'elenco delle figure\n122: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n123: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n124: \\listoftables %crea l'elenco delle tabelle\n125: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n126: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n127: \\chapter{Primo Capitolo} %crea il capitolo\n128: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n129: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\\rightmark}}\n130: \\pagenumbering{arabic} %mette i numeri arabi\n131: Questo � il primo capitolo.\n132: \\section{Prima Sezione} %crea la sezione\n133: Questa � la prima sezione.\n134: \n135: Ora vediamo un elenco numerato: %crea un elenco numerato\n136: \\begin{enumerate}\n137: \\item primo oggetto\n138: \\item secondo oggetto\n139: \\item terzo oggetto\n140: \\item quarto oggetto\n141: \\end{enumerate}\n142: \n143: \\begin{figure}[h] %crea l'ambiente figura; [h] sta\n144: % per here, cio� la figura va qui\n145: \\begin{center} %centra nel mezzo della pagina\n146: % la figura\n147: %\\includegraphics[width=5cm]{figura.eps}%inserisce una figura larga 5cm\n148: %se si vuole usare va scommentat\n149: %\n150: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%inserisce la legenda ed etichetta\n151: % la figura con \\label{fig:prima}\n152: \\caption[legenda elenco figure]{legenda sotto la figura}\\label{fig:prima}\n153: \\end{center}\n154: \\end{figure}\n155: \n156: \\section{Seconda Sezione}\n157: Ora vediamo un elenco puntato:\n158: \\begin{itemize} %crea un elenco puntato\n159: \\item primo oggetto\n160: \\item secondo oggetto\n161: \\end{itemize}\n162: \n163: \\section{Altra Sezione}\n164: Vediamo un elenco descrittivo:\n165: \\begin{description} %crea un elenco descrittivo\n166: \\item[OGGETTO1] prima descrizione;\n167: \\item[OGGETTO2] seconda descrizione;\n168: \\item[OGGETTO3] terza descrizione.\n169: \\end{description}\n170: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%crea una sottosezione\n171: \\subsection{Altra SottoSezione}\n172: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%crea una sottosottosezione\n173: \\subsubsection{SottoSottoSezione}Questa sottosottosezione non viene\n174: numerata, ma � solo scritta in grassetto.\n175: \\section{Altra Sezione} %crea una sottosezione\n176: Vediamo la creazione di una tabella; la tabella \\ref{tab:uno}\n177: (richiamo il nome della tabella utilizzando la label che ho messo sotto):\n178: la facciamo di tre righe e tre colonne, la prima colonna\n179: ``incolonnata'' a destra (r) e le altre centrate (c):\\\\\n180: \\begin{table}[h] %ambiente tabella\n181: %(serve per avere la legenda)\n182: \\begin{center} %centra nella pagina la tabella\n183: \\begin{tabular}{r|c|c} %tre colonne con righe verticali\n184: % prodotte con |\n185: \\hline \\hline %inserisce due righe orizzontali\n186: $(1,1)$ & $(1,2)$ & $(1,3)$\\\\ %& separa le colonne e con\n187: \\hline %inserisce una riga orizzontale\n188: $(2,1)$ & $(2,2)$ & $(2,3)$\\\\ % \\\\ va a capo\n189: \\hline %inserisce una riga orizzontale\n190: $(3,1)$ & $(3,2)$ & $(3,3)$\\\\\n191: \\hline \\hline %inserisce due righe orizzontali\n192: \\end{tabular}\n193: \\caption[legenda elenco tabelle]{legenda tabella}\\label{tab:uno}\n194: \\end{center}\n195: \\end{table}\n196: \\section{Altra Sezione}\\label{sec:prova}%posso mettere le label anche\n197: % alle section\n198: \\subsection{Listati dei programmi}\n199: \\subsubsection{Primo Listato}\n200: \\begin{verbatim}\n201: In questo ambiente posso scrivere come voglio,\n202: lasciare gli spazi che voglio e non % commentare quando voglio\n203: e ci sar� scritto tutto.\n204: Quando lo uso � meglio che disattivi il Wrap del WinEdt\n205: \\end{verbatim}\n206: \n207: \\section{Math mode}\n208: Per inserire simboli matematici (e lettere greche) serve la math mode:\n209: \n210: Usando il simbolo del dollaro hai la math mode inline: $5 \\times \\alpha = 3\\lambda$\n211: \n212: Altrimenti hai quella con le barre e le quadre \\[ \\frac{\\sum_6^i 3i\\theta}{12k^2\\times 7}\\]\n213: \n214: Infine hai quelle con begin equation (che vengono numerate):\n215: \\begin{equation}\n216: \\frac{1}{2}\\times A_{bcd}\\times E^{fgh}\n217: \\end{equation}\n218: \n219: Anche le equazioni possono avere label.\n220: \\section{url e footnote}\n221: per mettere un link usa url: \\url{wikipedia.it}\n222: \n223: per fare note a pi� di pagina usa footnote\\footnote{Tipo questa}\n224: \n225: \n226: \\section{Modalit� landscape}\n227: Se usi landscape la pagina viene girata (nel caso dovessi inserirne una molto grande)\n228: \\begin{landscape}\n229: \\begin{table}[H]\n230: \\centering\n231: \\begin{tabular}{|c|c|}\n232: \\hline\n233: \\textbf{Numero} & \\textbf{\\#} \\\\ \\hline\n234: UNO & 1 \\\\ \\hline\n235: DUE & 2 \\\\ \\hline\n236: TRE & 3 \\\\ \\hline\n237: \\end{tabular}\n238: \\caption{Tabella girata}\n239: \\label{tab:girata}\n240: \\end{table}\n241: \n242: \\end{landscape}\n243: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n244: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n245: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%per fare le conclusioni\n246: \\chapter*{Conclusioni}\n247: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n248: \\rhead[\\fancyplain{}{\\bfseries\n249: CONCLUSIONI}]{\\fancyplain{}{\\bfseries\\thepage}}\n250: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n251: CONCLUSIONI}}\n252: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Conclusioni\n253: % nell'indice\n254: \\addcontentsline{toc}{chapter}{Conclusioni} Queste sono le\n255: conclusioni.\\\\\n256: In queste conclusioni voglio fare un riferimento alla\n257: bibliografia: questo � il mio riferimento \\cite{K3,K4}.\n258: \n259: \n260: %Appendici alternative ed embed di pdf\n261: % \\renewcommand{\\appendixtocname}{Appendici}\n262: % \\renewcommand{\\appendixpagename}{Appendici}\n263: % % \\csname @openrightfalse\\endcsname\n264: % \\pagenumbering{gobble}\n265: % \\begin{appendices}\n266: % \\chapter{Appendice 1}\n267: % \\label{Appendice:A}\n268: % Appendice A\n269: \n270: % \\chapter{Embed di interi PDF}\n271: % \\label{Appendice:B}\n272: % Se ti serve puoi fare embed di PDF interi con pdfpage, scegliendo anche le pagine (o mettendo - se le vuoi tutte):\n273: \n274: % \\includepdf[pages=1]{pdf/sample.pdf}\n275: % \\end{appendices}\n276: \n277: \n278: \n279: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n280: \\renewcommand{\\chaptermark}[1]{\\markright{\\thechapter \\ #1}{}}\n281: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\\rightmark}}\n282: \\appendix %imposta le appendici\n283: \\chapter{Prima Appendice} %crea l'appendice\n284: In questa Appendice non si � utilizzato il comando:\\\\\n285: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\\verb\"\" � equivalente all'\n286: % ambiente verbatim,\n287: % ma si utilizza all'interno\n288: % di un discorso.\n289: \\verb\"\\clearpage{\\pagestyle{empty}\\cleardoublepage}\", ed infatti\n290: l'ultima pagina 8 ha l'intestazione con il numero di pagina in\n291: alto.\n292: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n293: \\rhead[\\fancyplain{}{\\bfseries \\thechapter \\:Prima Appendice}]\n294: {\\fancyplain{}{\\bfseries\\thepage}}\n295: \\chapter{Seconda Appendice} %crea l'appendice\n296: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n297: \\rhead[\\fancyplain{}{\\bfseries \\thechapter \\:Seconda Appendice}]\n298: {\\fancyplain{}{\\bfseries\\thepage}}\n299: \\begin{thebibliography}{90} %crea l'ambiente bibliografia\n300: \\rhead[\\fancyplain{}{\\bfseries \\leftmark}]{\\fancyplain{}{\\bfseries\n301: \\thepage}}\n302: \n303: % Bibliografia alternativa (usare chapter o section a seconda del tipo di documento)\n304: % \\renewcommand{\\bibsection}{}\n305: % \\chapter*{Riferimenti bibliografici}\n306: % \\bibliography{refs} %file .bib\n307: \n308: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Bibliografia\n309: % nell'indice \n310: \\addcontentsline{toc}{chapter}{Bibliografia}\n311: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%provare anche questo comando:\n312: %%%%%%%%%%%\\addcontentsline{toc}{chapter}{\\numberline{}{Bibliografia}}\n313: \\bibitem{K1} Primo oggetto bibliografia.\n314: \\bibitem{K2} Secondo oggetto bibliografia.\n315: \\bibitem{K3} Terzo oggetto bibliografia.\n316: \\bibitem{K4} Quarto oggetto bibliografia.\n317: \\end{thebibliography}\n318: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n319: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n320: \\chapter*{Ringraziamenti}\n321: \\thispagestyle{empty}\n322: Qui possiamo ringraziare il mondo intero!!!!!!!!!!\\\\\n323: Ovviamente solo se uno vuole, non � obbligatorio.\n324: \\end{document}\n325: \n```\n\nCompile log (tail):\n```\n143 hyphenation exceptions out of 8191\n 75i,11n,79p,541b,630s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>\nOutput written on main.pdf (24 pages, 162802 bytes).\nPDF statistics:\n 227 PDF objects out of 1000 (max. 8388607)\n 171 compressed objects within 2 object streams\n 57 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n% \\usepackage[latin1]{inputenc}\n\\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8\n=======\n\\usepackage[latin1]{inputenc}\n%\\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8\n>>>>>>> REPLACE\n", "id": "github2_cartabinaria__latex-thesis__49858cc", "doc": "github_multi2/cartabinaria__latex-thesis__49858cc", "mutation": "real", "source": "github", "repo": "cartabinaria/latex-thesis", "sha": "49858cc01475f01aa1867a740927bc412f08933a", "parent_sha": "b342bc0f14d857d2221fcdbed24fd98dbb92d68a", "license": "AGPL-3.0", "url": "https://github.com/cartabinaria/latex-thesis/commit/49858cc01475f01aa1867a740927bc412f08933a", "changed_files": ["tesi.tex"], "original_root": "tesi.tex", "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Unicode character � (U+FFFD)", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 92: LaTeX Error: Unicode character � (U+FFFD)\n- line 93: LaTeX Error: Unicode character � (U+FFFD)\n- line 111: LaTeX Error: Unicode character � (U+FFFD)\n- line 131: LaTeX Error: Unicode character � (U+FFFD)\n- line 133: LaTeX Error: Unicode character � (U+FFFD)\n- line 174: LaTeX Error: Unicode character � (U+FFFD)\n- line 205: LaTeX Error: Unicode character � (U+FFFD)\n- line 223: LaTeX Error: Unicode character � (U+FFFD)\n- line 226: LaTeX Error: Unicode character � (U+FFFD)\n- line 257: LaTeX Error: Unicode character � (U+FFFD)\n- line 284: LaTeX Error: Unicode character � (U+FFFD)\n- line 323: LaTeX Error: Unicode character � (U+FFFD)\n\nProject files:\n- frontespizio.tex\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%12pt: grandezza caratter\n2: %a4paper: formato a4\n3: %openright: apre i capitoli a destra\n4: %twoside: serve per fare un\n5: % documento fronteretro\n6: %report: stile tesi (oppure book)\n7: \\documentclass[12pt,a4paper,openright,twoside]{report}\n8: %\n9: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per scrivere in italiano\n10: \\usepackage[italian]{babel}\n11: %\n12: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per accettare i caratteri\n13: % digitati da tastiera come � �\n14: % si pu� usare anche\n15: % \\usepackage[T1]{fontenc}\n16: % per� con questa libreria\n17: % il tempo di compilazione\n18: % aumenta\n19: % \\usepackage[latin1]{inputenc}\n20: \\usepackage[utf8]{inputenc} %in alternativa si pu� usare utf8\n21: \n22: %\n23: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per impostare il documento\n24: \\usepackage{fancyhdr}\n25: %\n26: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per avere l'indentazione\n27: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% all'inizio dei capitoli, ...\n28: \\usepackage{indentfirst}\n29: %\n30: %%%%%%%%%libreria per mostrare le etichette\n31: %\\usepackage{showkeys}\n32: %\n33: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per inserire grafici\n34: \\usepackage{graphicx}\n35: %\n36: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%libreria per utilizzare font\n37: % particolari ad esempio\n38: % \\textsc{}\n39: \\usepackage{newlfont}\n40: %\n41: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%librerie matematiche\n42: \\usepackage{amssymb}\n43: \\usepackage{amsmath}\n44: \\usepackage{latexsym}\n45: \\usepackage{amsthm}\n46: %\n47: \\oddsidemargin=30pt \\evensidemargin=20pt%impostano i margini\n48: \\hyphenation{sil-la-ba-zio-ne pa-ren-te-si}%serve per la sillabazione: tra parentesi\n49: \t\t\t\t\t %vanno inserite come nell'esempio le parole\n50: %\t\t\t\t\t %che latex non riesce a tagliare nel modo giusto andando a capo\n51: \n52: %\n53: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%comandi per l'impostazione\n54: % della pagina, vedi il manuale\n55: % della libreria fancyhdr\n56: % per ulteriori delucidazioni\n57: \\pagestyle{fancy}\\addtolength{\\headwidth}{20pt}\n58: \\renewcommand{\\chaptermark}[1]{\\markboth{\\thechapter.\\ #1}{}}\n59: \\renewcommand{\\sectionmark}[1]{\\markright{\\thesection \\ #1}{}}\n60: \\rhead[\\fancyplain{}{\\bfseries\\leftmark}]{\\fancyplain{}{\\bfseries\\thepage}}\n61: \\cfoot{}\n62: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n63: \\linespread{1.3} %comando per impostare l'interlinea\n64: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%definisce nuovi comandi\n65: \n66: % % Bibliografia alternativa\n67: % \\usepackage{natbib}\n68: % \\bibliographystyle{alpha}\n69: % \\setcitestyle{super,open={[},close={]}}\n70: \n71: \\usepackage[titletoc,title,toc,page]{appendix} %appendici\n72: \\usepackage{pdfpages} %embed di pdf\n73: \\usepackage{lscape} %modalit� landscape\n74: \\usepackage{float}%posizionamento elementi\n75: \\usepackage{hyperref}%url\n76: \n77: \n78: \\begin{document}\n79: \\input{frontespizio.tex}\n80: \\begin{titlepage} %crea un ambiente libero da vincoli\n81: % di margini e grandezza caratteri:\n82: % si pu� modificare quello che si\n83: % vuole, tanto fuori da questo\n84: % ambiente tutto viene ristabilit\n85: %\n86: \\thispagestyle{empty} %elimina il numero della pagina\n87: \\topmargin=6.5cm %imposta il margina superiore a 6.5cm\n88: \\raggedleft %incolonna la scrittura a destra\n89: \\large %aumenta la grandezza del carattere\n90: % a 14pt\n91: \\em %emfatizza (corsivo) il carattere\n92: Questa � la \\textsc{Dedica}:\\\\\n93: ognuno pu� scrivere quello che vuole, \\\\\n94: anche nulla \\ldots %\\ldots lascia tre puntini\n95: \\newpage %va in una pagina nuov\n96: %\n97: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\n98: \\clearpage{\\pagestyle{empty}\\cleardoublepage}%non numera l'ultima pagina sinistra\n99: \\end{titlepage}\n100: \\pagenumbering{roman} %serve per mettere i numeri romani\n101: \\chapter*{Introduzione} %crea l'introduzione (un capitolo\n102: % non numerato)\n103: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n104: \\rhead[\\fancyplain{}{\\bfseries\n105: INTRODUZIONE}]{\\fancyplain{}{\\bfseries\\thepage}}\n106: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n107: INTRODUZIONE}}\n108: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Introduzione\n109: % nell'indice\n110: \\addcontentsline{toc}{chapter}{Introduzione}\n111: Questa � l'introduzione.\n112: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n113: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n114: \\tableofcontents %crea l'indice\n115: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n116: \\rhead[\\fancyplain{}{\\bfseries\\leftmark}]{\\fancyplain{}{\\bfseries\\thepage}}\n117: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n118: INDICE}}\n119: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n120: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n121: \\listoffigures %crea l'elenco delle figure\n122: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n123: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n124: \\listoftables %crea l'elenco delle tabelle\n125: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n126: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n127: \\chapter{Primo Capitolo} %crea il capitolo\n128: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n129: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\\rightmark}}\n130: \\pagenumbering{arabic} %mette i numeri arabi\n131: Questo � il primo capitolo.\n132: \\section{Prima Sezione} %crea la sezione\n133: Questa � la prima sezione.\n134: \n135: Ora vediamo un elenco numerato: %crea un elenco numerato\n136: \\begin{enumerate}\n137: \\item primo oggetto\n138: \\item secondo oggetto\n139: \\item terzo oggetto\n140: \\item quarto oggetto\n141: \\end{enumerate}\n142: \n143: \\begin{figure}[h] %crea l'ambiente figura; [h] sta\n144: % per here, cio� la figura va qui\n145: \\begin{center} %centra nel mezzo della pagina\n146: % la figura\n147: %\\includegraphics[width=5cm]{figura.eps}%inserisce una figura larga 5cm\n148: %se si vuole usare va scommentat\n149: %\n150: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%inserisce la legenda ed etichetta\n151: % la figura con \\label{fig:prima}\n152: \\caption[legenda elenco figure]{legenda sotto la figura}\\label{fig:prima}\n153: \\end{center}\n154: \\end{figure}\n155: \n156: \\section{Seconda Sezione}\n157: Ora vediamo un elenco puntato:\n158: \\begin{itemize} %crea un elenco puntato\n159: \\item primo oggetto\n160: \\item secondo oggetto\n161: \\end{itemize}\n162: \n163: \\section{Altra Sezione}\n164: Vediamo un elenco descrittivo:\n165: \\begin{description} %crea un elenco descrittivo\n166: \\item[OGGETTO1] prima descrizione;\n167: \\item[OGGETTO2] seconda descrizione;\n168: \\item[OGGETTO3] terza descrizione.\n169: \\end{description}\n170: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%crea una sottosezione\n171: \\subsection{Altra SottoSezione}\n172: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%crea una sottosottosezione\n173: \\subsubsection{SottoSottoSezione}Questa sottosottosezione non viene\n174: numerata, ma � solo scritta in grassetto.\n175: \\section{Altra Sezione} %crea una sottosezione\n176: Vediamo la creazione di una tabella; la tabella \\ref{tab:uno}\n177: (richiamo il nome della tabella utilizzando la label che ho messo sotto):\n178: la facciamo di tre righe e tre colonne, la prima colonna\n179: ``incolonnata'' a destra (r) e le altre centrate (c):\\\\\n180: \\begin{table}[h] %ambiente tabella\n181: %(serve per avere la legenda)\n182: \\begin{center} %centra nella pagina la tabella\n183: \\begin{tabular}{r|c|c} %tre colonne con righe verticali\n184: % prodotte con |\n185: \\hline \\hline %inserisce due righe orizzontali\n186: $(1,1)$ & $(1,2)$ & $(1,3)$\\\\ %& separa le colonne e con\n187: \\hline %inserisce una riga orizzontale\n188: $(2,1)$ & $(2,2)$ & $(2,3)$\\\\ % \\\\ va a capo\n189: \\hline %inserisce una riga orizzontale\n190: $(3,1)$ & $(3,2)$ & $(3,3)$\\\\\n191: \\hline \\hline %inserisce due righe orizzontali\n192: \\end{tabular}\n193: \\caption[legenda elenco tabelle]{legenda tabella}\\label{tab:uno}\n194: \\end{center}\n195: \\end{table}\n196: \\section{Altra Sezione}\\label{sec:prova}%posso mettere le label anche\n197: % alle section\n198: \\subsection{Listati dei programmi}\n199: \\subsubsection{Primo Listato}\n200: \\begin{verbatim}\n201: In questo ambiente posso scrivere come voglio,\n202: lasciare gli spazi che voglio e non % commentare quando voglio\n203: e ci sar� scritto tutto.\n204: Quando lo uso � meglio che disattivi il Wrap del WinEdt\n205: \\end{verbatim}\n206: \n207: \\section{Math mode}\n208: Per inserire simboli matematici (e lettere greche) serve la math mode:\n209: \n210: Usando il simbolo del dollaro hai la math mode inline: $5 \\times \\alpha = 3\\lambda$\n211: \n212: Altrimenti hai quella con le barre e le quadre \\[ \\frac{\\sum_6^i 3i\\theta}{12k^2\\times 7}\\]\n213: \n214: Infine hai quelle con begin equation (che vengono numerate):\n215: \\begin{equation}\n216: \\frac{1}{2}\\times A_{bcd}\\times E^{fgh}\n217: \\end{equation}\n218: \n219: Anche le equazioni possono avere label.\n220: \\section{url e footnote}\n221: per mettere un link usa url: \\url{wikipedia.it}\n222: \n223: per fare note a pi� di pagina usa footnote\\footnote{Tipo questa}\n224: \n225: \n226: \\section{Modalit� landscape}\n227: Se usi landscape la pagina viene girata (nel caso dovessi inserirne una molto grande)\n228: \\begin{landscape}\n229: \\begin{table}[H]\n230: \\centering\n231: \\begin{tabular}{|c|c|}\n232: \\hline\n233: \\textbf{Numero} & \\textbf{\\#} \\\\ \\hline\n234: UNO & 1 \\\\ \\hline\n235: DUE & 2 \\\\ \\hline\n236: TRE & 3 \\\\ \\hline\n237: \\end{tabular}\n238: \\caption{Tabella girata}\n239: \\label{tab:girata}\n240: \\end{table}\n241: \n242: \\end{landscape}\n243: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n244: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n245: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%per fare le conclusioni\n246: \\chapter*{Conclusioni}\n247: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n248: \\rhead[\\fancyplain{}{\\bfseries\n249: CONCLUSIONI}]{\\fancyplain{}{\\bfseries\\thepage}}\n250: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\n251: CONCLUSIONI}}\n252: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Conclusioni\n253: % nell'indice\n254: \\addcontentsline{toc}{chapter}{Conclusioni} Queste sono le\n255: conclusioni.\\\\\n256: In queste conclusioni voglio fare un riferimento alla\n257: bibliografia: questo � il mio riferimento \\cite{K3,K4}.\n258: \n259: \n260: %Appendici alternative ed embed di pdf\n261: % \\renewcommand{\\appendixtocname}{Appendici}\n262: % \\renewcommand{\\appendixpagename}{Appendici}\n263: % % \\csname @openrightfalse\\endcsname\n264: % \\pagenumbering{gobble}\n265: % \\begin{appendices}\n266: % \\chapter{Appendice 1}\n267: % \\label{Appendice:A}\n268: % Appendice A\n269: \n270: % \\chapter{Embed di interi PDF}\n271: % \\label{Appendice:B}\n272: % Se ti serve puoi fare embed di PDF interi con pdfpage, scegliendo anche le pagine (o mettendo - se le vuoi tutte):\n273: \n274: % \\includepdf[pages=1]{pdf/sample.pdf}\n275: % \\end{appendices}\n276: \n277: \n278: \n279: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n280: \\renewcommand{\\chaptermark}[1]{\\markright{\\thechapter \\ #1}{}}\n281: \\lhead[\\fancyplain{}{\\bfseries\\thepage}]{\\fancyplain{}{\\bfseries\\rightmark}}\n282: \\appendix %imposta le appendici\n283: \\chapter{Prima Appendice} %crea l'appendice\n284: In questa Appendice non si � utilizzato il comando:\\\\\n285: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\\verb\"\" � equivalente all'\n286: % ambiente verbatim,\n287: % ma si utilizza all'interno\n288: % di un discorso.\n289: \\verb\"\\clearpage{\\pagestyle{empty}\\cleardoublepage}\", ed infatti\n290: l'ultima pagina 8 ha l'intestazione con il numero di pagina in\n291: alto.\n292: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n293: \\rhead[\\fancyplain{}{\\bfseries \\thechapter \\:Prima Appendice}]\n294: {\\fancyplain{}{\\bfseries\\thepage}}\n295: \\chapter{Seconda Appendice} %crea l'appendice\n296: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%imposta l'intestazione di pagina\n297: \\rhead[\\fancyplain{}{\\bfseries \\thechapter \\:Seconda Appendice}]\n298: {\\fancyplain{}{\\bfseries\\thepage}}\n299: \\begin{thebibliography}{90} %crea l'ambiente bibliografia\n300: \\rhead[\\fancyplain{}{\\bfseries \\leftmark}]{\\fancyplain{}{\\bfseries\n301: \\thepage}}\n302: \n303: % Bibliografia alternativa (usare chapter o section a seconda del tipo di documento)\n304: % \\renewcommand{\\bibsection}{}\n305: % \\chapter*{Riferimenti bibliografici}\n306: % \\bibliography{refs} %file .bib\n307: \n308: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%aggiunge la voce Bibliografia\n309: % nell'indice \n310: \\addcontentsline{toc}{chapter}{Bibliografia}\n311: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%provare anche questo comando:\n312: %%%%%%%%%%%\\addcontentsline{toc}{chapter}{\\numberline{}{Bibliografia}}\n313: \\bibitem{K1} Primo oggetto bibliografia.\n314: \\bibitem{K2} Secondo oggetto bibliografia.\n315: \\bibitem{K3} Terzo oggetto bibliografia.\n316: \\bibitem{K4} Quarto oggetto bibliografia.\n317: \\end{thebibliography}\n318: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%non numera l'ultima pagina sinistra\n319: \\clearpage{\\pagestyle{empty}\\cleardoublepage}\n320: \\chapter*{Ringraziamenti}\n321: \\thispagestyle{empty}\n322: Qui possiamo ringraziare il mondo intero!!!!!!!!!!\\\\\n323: Ovviamente solo se uno vuole, non � obbligatorio.\n324: \\end{document}\n325: \n```\n\nCompile log (tail):\n```\n143 hyphenation exceptions out of 8191\n 75i,11n,79p,541b,630s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\n<\n/usr/local/texlive/2025/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>\nOutput written on main.pdf (24 pages, 162802 bytes).\nPDF statistics:\n 227 PDF objects out of 1000 (max. 8388607)\n 171 compressed objects within 2 object streams\n 57 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/cartabinaria/latex-thesis"} {"bib": false, "lane": "project", "file_edits": [{"file": "glossary.tex", "search": " description={Number of images in the dataset}\n}\n\\newglossaryentry{number_predicted_classes}{\n sort=dimensions,\n name={\\ensuremath{K}},\n description={Number of predicted class}\n}\n\n% Model symbols", "replace": " description={Number of images in the dataset}\n}\n\n% Model symbols", "type": "real"}, {"file": "glossary.tex", "search": "}\n\\newglossaryentry{predicted_class}{\n sort=model,\n name={\\ensuremath{\\hat{c}}},\n description={Class, the text associated to a given image}\n}\n\\newglossaryentry{encoding}{", "replace": "}\n\\newglossaryentry{encoding}{", "type": "real"}, {"file": "glossary.tex", "search": " description={Encoder, function maps class to encoding}\n}\n\\newglossaryentry{decoder}{\n sort=model,\n name={\\ensuremath{\\phi^{-1}}},\n description={Encoder, function maps encoding to class}\n}", "replace": " description={Encoder, function maps class to encoding}\n}", "type": "real"}, {"file": "glossary.tex", "search": "\\newacronym{lca}{LCA}{lowest common ancestor}\n\\newacronym{ilsvrc}{ILSVRC}{ImageNet Large Scale Visual Recognition Challenge}", "replace": "\\newacronym{lca}{LCA}{lowest common ancestor}", "type": "real"}], "reported_file": "chapters/2_related_work.tex", "fix_files": ["glossary.tex"], "single_shot_visible": false, "error_lines": [{"line": 19, "text": "Package glossaries Error: Glossary entry `ilsvrc' has not been defined.", "file": "chapters/2_related_work.tex", "fileLabel": "2_related_work.tex"}], "log_tail": "xmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (22 pages, 493094 bytes).\nPDF statistics:\n 432 PDF objects out of 1000 (max. 8388607)\n 349 compressed objects within 4 object streams\n 109 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `chapters/2_related_work.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- chapters/2_related_work.tex line 19: Package glossaries Error: Glossary entry `ilsvrc' has not been defined.\n\nProject files:\n- bibliography.bib\n- chapters/0_abstract.tex\n- chapters/1_introduction.tex\n- chapters/2_related_work.tex\n- chapters/3_injecting_semantic_information.tex\n- chapters/4_model_evaluation.tex\n- chapters/5_experiment_setup.tex\n- chapters/6_results_and_discussion.tex\n- chapters/7_conclusion.tex\n- figures/1_framework.tikz\n- figures/2_toy-dataset.tikz\n- figures/3_lca-heights.tikz\n- figures/4_lca-similarities.tikz\n- figures/university-logo-black.png\n- figures/university-logo-red.png\n- glossary.tex\n- main.tex\n- metropolis.tikzstyles\n- tikzit.sty\n- title.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass[twosides]{report}\n2: \n3: % Packages -------------------------------------------------------------------\n4: \n5: % math symbols, fonts, environments\n6: \\usepackage{amsfonts, amsmath, amssymb, bm, xfrac}\n7: \n8: % page layout\n9: \\usepackage{geometry}\n10: \n11: % graphics (images, plots)\n12: \\usepackage{graphicx, subcaption}\n13: \\graphicspath{{figures/}}\n14: \n15: % diagrams in tikz\n16: \\usepackage{tikzit}\n17: \n18: % import tikzstyle\n19: \\input{metropolis.tikzstyles}\n20: \n21: % bibliography\n22: \\usepackage[\n23: backend=biber,\n24: style=numeric,\n25: sorting=none,\n26: ]{biblatex}\n27: \\addbibresource{bibliography.bib}\n28: \n29: % references\n30: \\usepackage{hyperref}\n31: \\usepackage{cleveref}\n32: \\hypersetup{\n33: colorlinks=true,\n34: linkcolor=black, % Color of internal links (e.g., table of contents)\n35: citecolor=gray, % Color of citation links (e.g., in-text references)\n36: urlcolor=black, % Color of URLs and external links\n37: }\n38: \n39: % glossary\n40: \\usepackage[toc, acronym]{glossaries}\n41: \n42: % improved toc\n43: \\usepackage{tocbibind}\n44: \n45: \n46: % Commands -------------------------------------------------------------------\n47: \n48: % use := for \"is defined to be equal to\"\n49: \\mathchardef\\ordinarycolon\\mathcode`\\:\n50: \\mathcode`\\:=\\string\"8000\n51: \\begingroup \\catcode`\\:=\\active\n52: \\gdef:{\\mathrel{\\mathop\\ordinarycolon}}\n53: \\endgroup\n54: \n55: % math operators\n56: \\DeclareMathOperator{\\lca}{lca}\n57: \\DeclareMathOperator{\\Loss}{\\mathcal{L}}\n58: \\DeclareMathOperator{\\height}{height}\n59: \n60: % glossary\n61: \\input{glossary.tex}\n62: \n63: \n64: % Document -------------------------------------------------------------------\n65: \n66: \\begin{document}\n67: \n68: \\include{title}\n69: \n70: \\include{chapters/0_abstract}\n71: \\tableofcontents\n72: \n73: \\listoffigures\n74: \\listoftables\n75: \n76: \\include{chapters/1_introduction}\n77: \\include{chapters/2_related_work}\n78: \\include{chapters/3_injecting_semantic_information}\n79: \\include{chapters/4_model_evaluation}\n80: \\include{chapters/5_experiment_setup}\n81: \\include{chapters/6_results_and_discussion}\n82: \\include{chapters/7_conclusion}\n83: \n84: \\printglossary[nonumberlist, title=Notation]\n85: \\printglossary[nonumberlist, type=acronym]\n86: \\printbibliography[heading=bibintoc]\n87: \n88: \\end{document}\n89: \n```\n\n`tikzit.sty` (full file, line-numbered):\n```\n1: \\usepackage{tikz}\n2: \\usetikzlibrary{backgrounds}\n3: \\usetikzlibrary{arrows}\n4: \\usetikzlibrary{shapes,shapes.geometric,shapes.misc}\n5: \n6: % this style is applied by default to any tikzpicture included via \\tikzfig\n7: \\tikzstyle{tikzfig}=[baseline=-0.25em,scale=0.5]\n8: \n9: % these are dummy properties used by TikZiT, but ignored by LaTex\n10: \\pgfkeys{/tikz/tikzit fill/.initial=0}\n11: \\pgfkeys{/tikz/tikzit draw/.initial=0}\n12: \\pgfkeys{/tikz/tikzit shape/.initial=0}\n13: \\pgfkeys{/tikz/tikzit category/.initial=0}\n14: \n15: % standard layers used in .tikz files\n16: \\pgfdeclarelayer{edgelayer}\n17: \\pgfdeclarelayer{nodelayer}\n18: \\pgfsetlayers{background,edgelayer,nodelayer,main}\n19: \n20: % style for blank nodes\n21: \\tikzstyle{none}=[inner sep=0mm]\n22: \n23: % include a .tikz file\n24: \\newcommand{\\tikzfig}[1]{%\n25: {\\tikzstyle{every picture}=[tikzfig]\n26: \\IfFileExists{#1.tikz}\n27: {\\input{#1.tikz}}\n28: {%\n29: \\IfFileExists{./figures/#1.tikz}\n30: {\\input{./figures/#1.tikz}}\n31: {\\tikz[baseline=-0.5em]{\\node[draw=red,font=\\color{red},fill=red!10!white] {\\textit{#1}};}}%\n32: }}%\n33: }\n34: \n35: % the same as \\tikzfig, but in a {center} environment\n36: \\newcommand{\\ctikzfig}[1]{%\n37: \\begin{center}\\rm\n38: \\tikzfig{#1}\n39: \\end{center}}\n40: \n41: % fix strange self-loops, which are PGF/TikZ default\n42: \\tikzstyle{every loop}=[]\n43: \n```\n\nCurrent content of `chapters/2_related_work.tex` (full file, line-numbered):\n```\n1: \\chapter{Related Work}\n2: \\label{ch:related-work}\n3: \n4: \\section{Image Classification with Neural Network}\n5: \\label{sec:image-classification-with-neural-network}\n6: \n7: One of the first instances where Neural Network were employed for image\n8: classification was in 1998 by Lecun et al.~\\cite{GradientBasedLecun1998}. Their\n9: model, LeNet-5, was able to identify handwritten digit with higher accuracy\n10: than previous methods which relied on manual features extraction such edges\n11: detection and hard-coded pattern recognition. A raw image of a digit is passed\n12: as input to LeNet and the model spits out a number from 0 to 9. Some\n13: foundational ideas were at the core of the architecture (convolutional\n14: operations, gradient based optimization, pooling layers) stood the test of time\n15: and proved to be highly successful.\n16: \n17: Fast forwarding to 2012. AlexNet~\\cite{ImagenetClassiKrizhe2017}, a\n18: \\acrfull{cnn} similar in spirit to LeNet-5, annihilated competitions at\n19: \\acrfull{ilsvrc}~\\cite{ImagenetLargeRussak2014} with a whopping 10.8 \\% gap on\n20: the runner-up in top-5 error metric. This result proved the potential of\n21: \\acrshort{cnn}s to process bigger color images (224 × 224 × 3) and this sparked\n22: interest in the field which abandoned the idea of manual features extraction in\n23: favour of the end-to-end approach.\n24: \n25: Researchers investigated various moving part of \\acrshort{cnn} architecture:\n26: depth of the model, optimal kernel size, number of filters, pooling operations.\n27: \\cite{VeryDeepConvoSimony2014,GoingDeeperWiSzeged2014} focus on increasing the\n28: depth of the models and \\cite{GoingDeeperWiSzeged2014} was able to do so by the\n29: introduction of a highly efficient ``Inception module'' which was able to\n30: increase the depth while keeping the FLOPs under control. Efficiency at\n31: inference time is crucial for embedding models into resource constrained\n32: devices such smartphones or IOTs~\\cite{SqueezenetAleIandol2016,\n33: MnasnetPlatfoTanM2018, MobilenetsEffHoward2017}.\n34: \n35: A problem that arose with the increase in depth was the so-called ``vanishing\n36: gradient''. The gradient of the loss function with respect to the model's\n37: parameters in the early layers tends to zero and this affect the ability of the\n38: optimizer to update the weights towards a local minimum. Residual connections,\n39: introduced in ResNet~\\cite{DeepResidualLHeKa2015, IdentityMappinHeKa2016}, are\n40: shortcuts in the network architecture that circumvent the problem allowing the\n41: gradient to flow backwards effectively, so deeper models can be trained.\n42: Connections between layers, i.e. the topology of the network, was further\n43: explored by~\\cite{DualPathNetwoChen2017, DenselyConnectHuang2016} and prior\n44: using evolutionary methods by~\\cite{DesigningNeuraMiller1989,\n45: EvolvingNeuralStanle2002}.\n46: \n47: Neural Architecture Search was employed to search for the width and the depth\n48: of a model given a basic building block~\\cite{ProgressiveNeuLiuC2017,\n49: GeneticCnnXieL2017, LargeScaleEvoReal2017, RegularizedEvoReal2018}. Using\n50: different building blocks and optimizing for different budget types (e.g.\n51: FLOPs, number of parameters, inference time) various architecture were\n52: produced. EfficientNets~\\cite{EfficientnetRTanM2019, Efficientnetv2TanM2021}\n53: are a well-known example of such approach that make use of\n54: Squeeze-and-Excitation module~\\cite{SqueezeAndExcHuJi2017} as basic component.\n55: \n56: Stacks of convolution blocks followed by a fully connected layers start to\n57: reach the limit regarding classification accuracy. \\acrshort{cnn}s were\n58: equipped with an attention mechanism be able to effectively process global\n59: features in an image defining hybrid\n60: architecture~\\cite{SpatialTransfoJaderb2015, LookAndThinkCaoC2015,\n61: ShowAttendAnXuKe2015, ScaCnnSpatiaChen2016}. Recently interest shifted towards\n62: Vision Transformers (ViT)~\\cite{AnImageIsWorDosovi2020}, architecture that use\n63: solely attention mechanism for features extraction which are able to achieve\n64: state-of-the-art results in some well-established image classification\n65: problems~\\cite{TransformersInKhan2021, ASurveyOnVisHanK2023}. ViT required to\n66: be trained of huge datasets to achieve competitive performance and, at the\n67: moment of the writing, cannot run on consumer and low power devices due to high\n68: computational cost.\n69: \n70: \\section{Semantic Information Representations}\n71: \\label{sec:semantic-information-sources}\n72: Image classification consists in assigning a label to an image given a fixed\n73: set of labels. Without any additional information about labels they are just a\n74: set of symbols with no structure nor relationship between them. On the other\n75: hand having richer information on labels turns out to be beneficial for model\n76: interpretability~\\cite{ImprovingInterDong2017}, image\n77: summarization~\\cite{SemanticImagePasini2022} and image classification as\n78: well~\\cite{MakingBetterMBertin2019}. Assuming that label a label of an image is\n79: an English word indicating what is depicted in the image, we can obtain extra\n80: information about a label by various sources which produce different\n81: representations.\n82: \n83: \\paragraph{Hierarchies (trees)}\n84: \\label{par:hierarchies-tree}\n85: WordNet~\\cite{WordnetMi1995} is a lexical database for the English language\n86: where words are linked together by semantic relations (synonyms, hyponyms and\n87: meronyms) resulting in a graph structure. The aforementioned ImageNet database\n88: was build using WordNet as a source of labels, so information from WordNet could\n89: be exploited when training a model on ImageNet. Other examples of semantically\n90: enriched datasets include iNaturalist~\\cite{TheInaturalistHorn2017} (taxonomy)\n91: and CIFAR-100~\\cite{LearningMultipKrizhe2009} (handcrafted). Given a graph\n92: structure, it can be pruned in such a way to obtain a rooted tree, that is a\n93: connected acyclic undirected graph with one vertex as root. Moreover, we can\n94: assign a natural orientation to edges towards (or away from) the root. The\n95: resulting data structure can be used to represent hierarchical organised\n96: knowledge such ontologies or taxonomies.\n97: \n98: \\paragraph{Embeddings (vectors)}\n99: \\label{par:embeddings-vectors}\n100: The majority of times labels are just a set of words with no structure between,\n101: so semantic structure has to be constructed from bare words. A flexible\n102: approach is to resort to internal representation of a pre-trained \\acrfull{lm}\n103: commonly knows as word embeddings~\\cite{BeyondWordEmbIncitt2023}. The extracted\n104: semantic structure is organised as a vector space where words are represented\n105: as real-valued vectors. The input to a \\acrshort{lm} can be the raw label or a\n106: detailed description of the label. Additionally, such a description can be\n107: written by human experts, scrape from the web or generated by a \\acrshort{lm}\n108: itself.\\medskip\n109: \n110: These two approaches produce different representations of semantic information\n111: (tree vs vectors) so exist different ways to inject it into a model. It is\n112: worth mentioning that those are not the only source of external source of\n113: information useful for vision models (e.g. human-annotated attributes were left\n114: out). But those are the ones that requires the least human effort to be\n115: exploit, a crucial aspect for training large models which requires huge\n116: datasets.\n117: \n118: \\section{Semantic Information Injection}\n119: \\label{sec:semantic-information-injection}\n120: \n121: Semantic Information can be injected in different part of a model: directly into\n122: labels, in the loss function or by designing a custom architecture. Of course\n123: the line between custom loss functions and custom architectures is somewhat\n124: blurred because come up with a custom architecture usually requires\n125: non-standard approach to its optimization.\n126: \n127: \\subsection{Hierarchies}\n128: \\label{subsec:hierarchies}\n129: % Custom Labels Encoding\n130: Adding semantic information directly at labels level requires to find an\n131: encoding capable of representing the meaningful relationship described by\n132: hierarchy tree. We use the term \\emph{hierarchical encoding} to refer to an\n133: encoding of labels that is able to represent the hierarchical relationship. The\n134: most straightforward way to produce a hierarchical encoding is to define a\n135: notion of similarity in the tree structure and port it to the encoding. That is\n136: two labels similar in the hierarchical tree have similar encoding. The various\n137: proposed approaches differs by the definition of similarity and the derivation\n138: of the encoding. \\cite{HierarchyBasedBarz2018} solve systems of equations\n139: requiring that the dot product of two encoding is proportional to the\n140: similarity in the hierarchical tree. \\cite{MakingBetterMBertin2019} apply the\n141: softmax function to the rows of pairwise similarity matrix derived from the\n142: hierarchy. \\cite{BeyondOneHotPerott2023} followed similar strategy but rescale\n143: intervals instead of using softmax and combine the result with the standard\n144: one-hot encoding. Redmon et al.~\\cite{Yolo9000BetteRedmon2016} improved the\n145: YOLO model~\\cite{YouOnlyLookORedmon2015} by exploiting WordTree, a tree-like\n146: structure derived from WordNet where labels are coming from different datasets.\n147: They do not apply softmax over fine-grained classes but concatenate labels\n148: encoding from different levels of the hierarchy and compute the softmax over\n149: all sysnsets that are hyponyms of the same concept.\n150: \n151: % Custom Loss\n152: Another approach consists in defining a custom loss function that takes into\n153: account the relationship between labels. The idea is that a properly\n154: constructed function can steer the model towards a more hierarchical structured\n155: internal representation. For nearest-neighbour classifiers, Verma et\n156: al.~\\cite{LearningHierarVerma2012} learn distances metrics for each node of the\n157: hierarchy tree by using ``context sensitive loss'' accounting for distances\n158: between nodes. Wu et al.~\\cite{LearningToMakWuHu2016} add on top of\n159: \\acrshort{cnn} parallel linked fully connected (FC) layers corresponding to\n160: hierarchy levels and used their outputs as regularized for standard cross\n161: entropy loss. Conversely, Alsallah et al.~\\cite{DoConvolutionaAlsall2017} add\n162: FC heads at different depth of an AlexNet model each of which contributing to\n163: the total loss. Bertinetto et al.~\\cite{MakingBetterMBertin2019} introduce\n164: ``hierarchical cross-entropy'', a loss function that incorporates class\n165: hierarchy information by factorizing the predicted class probabilities into\n166: conditional probabilities along the paths in the hierarchy tree, and weighting\n167: the cross entropy of each conditional probability based on the depth in the\n168: hierarchy. In a series of works~\\cite{ComplementObjeChen2019,\n169: ImprovingAdverChen2019, LearningWithHChen2019}, Chen et al. introduce\n170: ``complement entropy loss function'' and its hierarchical version. That loss\n171: revolves around lowering the model probabilities of the wrong classes instead\n172: of increasing the one associated to the correct class.\n173: \n174: % Custom Architecture\n175: Some of the aforementioned works~\\cite{LearningToMakWuHu2016,\n176: DoConvolutionaAlsall2017} implemented a custom architecture alongside with a\n177: custom loss function as well. Grag et al.~\\cite{LearningHierarGarg2022} propose\n178: a architecture similar to~\\cite{LearningToMakWuHu2016} (parallel FC layers per\n179: hierarchical level as classifiers) but put more emphasis on forcing structure\n180: in the feature space by using four terms loss function. The first term is the\n181: standard cross entropy on fine-grained labels while the second is the\n182: Jensen-Shannon divergence between the predictions of a coarse classifier and\n183: soft label distributions derived from the finer-grained classifier predictions.\n184: The others two term promoted a more discriminative (marginal loss) and a better\n185: oriented (geometric consistency loss) feature space. In the context of\n186: fine-grained visual classification, Chang et al.~\\cite{YourFlamingoChang2020}\n187: split the features vector in $K$-fold and use them to feed $K$ classifiers\n188: where $K$ is the number of level in the hierarchy. In the forward pass the\n189: features used in finer classifiers are also used in the coarser ones but a\n190: gradient controller block the gradient propagation avoiding that fine-grained\n191: features will be biased towards coarse-grained recognition. In this way there\n192: is a disentanglement of the features space but still fine-level features help\n193: coarse-level classifiers.\n194: \n195: \\subsection{Embeddings}\n196: \\label{subsec:embeddings}\n197: % Make use of semantic information in computer vision is not a new idea. In fact,\n198: % it was an active area of research before the advent of deep learning.\n199: % Researchers employed it to improve models classification\n200: % accuracy~\\cite{ScalableRecognNister2006, SemanticHierarMarsza2007,\n201: % ExploitingObjeZweig2007, LearningMultipKrizhe2009} and to cope with a lot of\n202: % classes~\\cite{WhatDoesClassDeng2010}. Accuracy was dramatically improved with\n203: % the introduction of CNNs and the interest in semantic information injection\n204: % faded. The recent revamped interest is concerned with different challenges:\n205: % Zero-Shot-Learning, fine-grained classification, model explainability and\n206: % quality of errors.\n207: \n208: Extracting semantic information from bare labels text using \\acrshort{lm} is a\n209: very flexible approach that do not required additional information about labels\n210: and, sometimes, not even the labels themselves. In image classification,\n211: \\acrfull{zsl} is a collection of techniques where a model is trained to\n212: recognize classes that were not present during\n213: training~\\cite{AnIntroductionSoysal2020}. This can be achieved by leveraging\n214: the capability of other pre-trained models and instilling such knowledge into\n215: the image classification model. DeViSE~\\cite{DeviseADeepFrome2013} use latent\n216: information extracted from big text corpus, Wikipedia, to build capable\n217: \\acrshort{zsl} model. The key idea was the use of the recently introduced\n218: learnable words embeddings~\\cite{EfficientEstimMikolo2013,\n219: DistributedRepMikolo2013}, later patented by Google as\n220: Word2Vec~\\cite{ComputingNumerMikolo2013}. It was shown\n221: in~\\cite{EvaluationOfOAkata2014, LabelEmbeddingAkata2015} that embeddings\n222: coming from different source (e.g. hierarchy and text corpora) can carry\n223: non-redundant information and can be combined to learn a better encoding. For\n224: that reason various hybrid approach, in the spirit of DeViSE, has been\n225: proposed. Akata et al.~\\cite{EvaluationOfOAkata2014} propose \\acrshort{zsl}\n226: model specifically geared towards fine-grained classification. Liu et\n227: al.~\\cite{HyperbolicVisuLiuS2020} move parts of the model pipeline in\n228: hyperbolic space arguing for its suitability regarding hierarchical\n229: representation, evidence supported by~\\cite{PoincareEmbeddNickel2017,\n230: HyperbolicEntaGanea2018}.\n231: \n232: % Talk a bit about cutting edge research and multimodal learning\n233: Nowadays it seems that embeddings, i.e. latent representation of information as\n234: real-valued vectors, are a powerful way to make models different talks and\n235: represent concepts in a somewhat similar fashion. Transformer\n236: architecture~\\cite{AttentionIsAlVaswan2017} was introduced in the context of\n237: Natural Language Processing. They proved to be a general-purpose differentiable\n238: computer: expressive (in the forward pass), optimizable (via backpropagation\n239: and gradient \n```\n\nCompile log (tail):\n```\nxmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (22 pages, 493094 bytes).\nPDF statistics:\n 432 PDF objects out of 1000 (max. 8388607)\n 349 compressed objects within 4 object streams\n 109 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\newacronym{lca}{LCA}{lowest common ancestor}\n=======\n\\newacronym{lca}{LCA}{lowest common ancestor}\n\\newacronym{ilsvrc}{ILSVRC}{ImageNet Large Scale Visual Recognition Challenge}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n description={Encoder, function maps class to encoding}\n}\n=======\n description={Encoder, function maps class to encoding}\n}\n\\newglossaryentry{decoder}{\n sort=model,\n name={\\ensuremath{\\phi^{-1}}},\n description={Encoder, function maps encoding to class}\n}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n}\n\\newglossaryentry{encoding}{\n=======\n}\n\\newglossaryentry{predicted_class}{\n sort=model,\n name={\\ensuremath{\\hat{c}}},\n description={Class, the text associated to a given image}\n}\n\\newglossaryentry{encoding}{\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n description={Number of images in the dataset}\n}\n\n% Model symbols\n=======\n description={Number of images in the dataset}\n}\n\\newglossaryentry{number_predicted_classes}{\n sort=dimensions,\n name={\\ensuremath{K}},\n description={Number of predicted class}\n}\n\n% Model symbols\n>>>>>>> REPLACE\n", "id": "github2_S1M0N38__master-thesis__f0614e0", "doc": "github_multi2/S1M0N38__master-thesis__f0614e0", "mutation": "real", "source": "github", "repo": "S1M0N38/master-thesis", "sha": "f0614e07159bdc22197538094fae71e812bd3fb9", "parent_sha": "eaba7d966e466d1548817bc7cda5f7f765522da3", "license": "MIT", "url": "https://github.com/S1M0N38/master-thesis/commit/f0614e07159bdc22197538094fae71e812bd3fb9", "changed_files": ["glossary.tex"], "original_root": "main.tex", "n_files": 13, "engine": "pdflatex", "error_category": "Package glossaries Error: Glossary entry 'X' has not been defined.", "prompt_v1": "The LaTeX file `chapters/2_related_work.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- chapters/2_related_work.tex line 19: Package glossaries Error: Glossary entry `ilsvrc' has not been defined.\n\nProject files:\n- bibliography.bib\n- chapters/0_abstract.tex\n- chapters/1_introduction.tex\n- chapters/2_related_work.tex\n- chapters/3_injecting_semantic_information.tex\n- chapters/4_model_evaluation.tex\n- chapters/5_experiment_setup.tex\n- chapters/6_results_and_discussion.tex\n- chapters/7_conclusion.tex\n- figures/1_framework.tikz\n- figures/2_toy-dataset.tikz\n- figures/3_lca-heights.tikz\n- figures/4_lca-similarities.tikz\n- figures/university-logo-black.png\n- figures/university-logo-red.png\n- glossary.tex\n- main.tex\n- metropolis.tikzstyles\n- tikzit.sty\n- title.tex\n\nCurrent content of `chapters/2_related_work.tex` (full file, line-numbered):\n```\n1: \\chapter{Related Work}\n2: \\label{ch:related-work}\n3: \n4: \\section{Image Classification with Neural Network}\n5: \\label{sec:image-classification-with-neural-network}\n6: \n7: One of the first instances where Neural Network were employed for image\n8: classification was in 1998 by Lecun et al.~\\cite{GradientBasedLecun1998}. Their\n9: model, LeNet-5, was able to identify handwritten digit with higher accuracy\n10: than previous methods which relied on manual features extraction such edges\n11: detection and hard-coded pattern recognition. A raw image of a digit is passed\n12: as input to LeNet and the model spits out a number from 0 to 9. Some\n13: foundational ideas were at the core of the architecture (convolutional\n14: operations, gradient based optimization, pooling layers) stood the test of time\n15: and proved to be highly successful.\n16: \n17: Fast forwarding to 2012. AlexNet~\\cite{ImagenetClassiKrizhe2017}, a\n18: \\acrfull{cnn} similar in spirit to LeNet-5, annihilated competitions at\n19: \\acrfull{ilsvrc}~\\cite{ImagenetLargeRussak2014} with a whopping 10.8 \\% gap on\n20: the runner-up in top-5 error metric. This result proved the potential of\n21: \\acrshort{cnn}s to process bigger color images (224 × 224 × 3) and this sparked\n22: interest in the field which abandoned the idea of manual features extraction in\n23: favour of the end-to-end approach.\n24: \n25: Researchers investigated various moving part of \\acrshort{cnn} architecture:\n26: depth of the model, optimal kernel size, number of filters, pooling operations.\n27: \\cite{VeryDeepConvoSimony2014,GoingDeeperWiSzeged2014} focus on increasing the\n28: depth of the models and \\cite{GoingDeeperWiSzeged2014} was able to do so by the\n29: introduction of a highly efficient ``Inception module'' which was able to\n30: increase the depth while keeping the FLOPs under control. Efficiency at\n31: inference time is crucial for embedding models into resource constrained\n32: devices such smartphones or IOTs~\\cite{SqueezenetAleIandol2016,\n33: MnasnetPlatfoTanM2018, MobilenetsEffHoward2017}.\n34: \n35: A problem that arose with the increase in depth was the so-called ``vanishing\n36: gradient''. The gradient of the loss function with respect to the model's\n37: parameters in the early layers tends to zero and this affect the ability of the\n38: optimizer to update the weights towards a local minimum. Residual connections,\n39: introduced in ResNet~\\cite{DeepResidualLHeKa2015, IdentityMappinHeKa2016}, are\n40: shortcuts in the network architecture that circumvent the problem allowing the\n41: gradient to flow backwards effectively, so deeper models can be trained.\n42: Connections between layers, i.e. the topology of the network, was further\n43: explored by~\\cite{DualPathNetwoChen2017, DenselyConnectHuang2016} and prior\n44: using evolutionary methods by~\\cite{DesigningNeuraMiller1989,\n45: EvolvingNeuralStanle2002}.\n46: \n47: Neural Architecture Search was employed to search for the width and the depth\n48: of a model given a basic building block~\\cite{ProgressiveNeuLiuC2017,\n49: GeneticCnnXieL2017, LargeScaleEvoReal2017, RegularizedEvoReal2018}. Using\n50: different building blocks and optimizing for different budget types (e.g.\n51: FLOPs, number of parameters, inference time) various architecture were\n52: produced. EfficientNets~\\cite{EfficientnetRTanM2019, Efficientnetv2TanM2021}\n53: are a well-known example of such approach that make use of\n54: Squeeze-and-Excitation module~\\cite{SqueezeAndExcHuJi2017} as basic component.\n55: \n56: Stacks of convolution blocks followed by a fully connected layers start to\n57: reach the limit regarding classification accuracy. \\acrshort{cnn}s were\n58: equipped with an attention mechanism be able to effectively process global\n59: features in an image defining hybrid\n60: architecture~\\cite{SpatialTransfoJaderb2015, LookAndThinkCaoC2015,\n61: ShowAttendAnXuKe2015, ScaCnnSpatiaChen2016}. Recently interest shifted towards\n62: Vision Transformers (ViT)~\\cite{AnImageIsWorDosovi2020}, architecture that use\n63: solely attention mechanism for features extraction which are able to achieve\n64: state-of-the-art results in some well-established image classification\n65: problems~\\cite{TransformersInKhan2021, ASurveyOnVisHanK2023}. ViT required to\n66: be trained of huge datasets to achieve competitive performance and, at the\n67: moment of the writing, cannot run on consumer and low power devices due to high\n68: computational cost.\n69: \n70: \\section{Semantic Information Representations}\n71: \\label{sec:semantic-information-sources}\n72: Image classification consists in assigning a label to an image given a fixed\n73: set of labels. Without any additional information about labels they are just a\n74: set of symbols with no structure nor relationship between them. On the other\n75: hand having richer information on labels turns out to be beneficial for model\n76: interpretability~\\cite{ImprovingInterDong2017}, image\n77: summarization~\\cite{SemanticImagePasini2022} and image classification as\n78: well~\\cite{MakingBetterMBertin2019}. Assuming that label a label of an image is\n79: an English word indicating what is depicted in the image, we can obtain extra\n80: information about a label by various sources which produce different\n81: representations.\n82: \n83: \\paragraph{Hierarchies (trees)}\n84: \\label{par:hierarchies-tree}\n85: WordNet~\\cite{WordnetMi1995} is a lexical database for the English language\n86: where words are linked together by semantic relations (synonyms, hyponyms and\n87: meronyms) resulting in a graph structure. The aforementioned ImageNet database\n88: was build using WordNet as a source of labels, so information from WordNet could\n89: be exploited when training a model on ImageNet. Other examples of semantically\n90: enriched datasets include iNaturalist~\\cite{TheInaturalistHorn2017} (taxonomy)\n91: and CIFAR-100~\\cite{LearningMultipKrizhe2009} (handcrafted). Given a graph\n92: structure, it can be pruned in such a way to obtain a rooted tree, that is a\n93: connected acyclic undirected graph with one vertex as root. Moreover, we can\n94: assign a natural orientation to edges towards (or away from) the root. The\n95: resulting data structure can be used to represent hierarchical organised\n96: knowledge such ontologies or taxonomies.\n97: \n98: \\paragraph{Embeddings (vectors)}\n99: \\label{par:embeddings-vectors}\n100: The majority of times labels are just a set of words with no structure between,\n101: so semantic structure has to be constructed from bare words. A flexible\n102: approach is to resort to internal representation of a pre-trained \\acrfull{lm}\n103: commonly knows as word embeddings~\\cite{BeyondWordEmbIncitt2023}. The extracted\n104: semantic structure is organised as a vector space where words are represented\n105: as real-valued vectors. The input to a \\acrshort{lm} can be the raw label or a\n106: detailed description of the label. Additionally, such a description can be\n107: written by human experts, scrape from the web or generated by a \\acrshort{lm}\n108: itself.\\medskip\n109: \n110: These two approaches produce different representations of semantic information\n111: (tree vs vectors) so exist different ways to inject it into a model. It is\n112: worth mentioning that those are not the only source of external source of\n113: information useful for vision models (e.g. human-annotated attributes were left\n114: out). But those are the ones that requires the least human effort to be\n115: exploit, a crucial aspect for training large models which requires huge\n116: datasets.\n117: \n118: \\section{Semantic Information Injection}\n119: \\label{sec:semantic-information-injection}\n120: \n121: Semantic Information can be injected in different part of a model: directly into\n122: labels, in the loss function or by designing a custom architecture. Of course\n123: the line between custom loss functions and custom architectures is somewhat\n124: blurred because come up with a custom architecture usually requires\n125: non-standard approach to its optimization.\n126: \n127: \\subsection{Hierarchies}\n128: \\label{subsec:hierarchies}\n129: % Custom Labels Encoding\n130: Adding semantic information directly at labels level requires to find an\n131: encoding capable of representing the meaningful relationship described by\n132: hierarchy tree. We use the term \\emph{hierarchical encoding} to refer to an\n133: encoding of labels that is able to represent the hierarchical relationship. The\n134: most straightforward way to produce a hierarchical encoding is to define a\n135: notion of similarity in the tree structure and port it to the encoding. That is\n136: two labels similar in the hierarchical tree have similar encoding. The various\n137: proposed approaches differs by the definition of similarity and the derivation\n138: of the encoding. \\cite{HierarchyBasedBarz2018} solve systems of equations\n139: requiring that the dot product of two encoding is proportional to the\n140: similarity in the hierarchical tree. \\cite{MakingBetterMBertin2019} apply the\n141: softmax function to the rows of pairwise similarity matrix derived from the\n142: hierarchy. \\cite{BeyondOneHotPerott2023} followed similar strategy but rescale\n143: intervals instead of using softmax and combine the result with the standard\n144: one-hot encoding. Redmon et al.~\\cite{Yolo9000BetteRedmon2016} improved the\n145: YOLO model~\\cite{YouOnlyLookORedmon2015} by exploiting WordTree, a tree-like\n146: structure derived from WordNet where labels are coming from different datasets.\n147: They do not apply softmax over fine-grained classes but concatenate labels\n148: encoding from different levels of the hierarchy and compute the softmax over\n149: all sysnsets that are hyponyms of the same concept.\n150: \n151: % Custom Loss\n152: Another approach consists in defining a custom loss function that takes into\n153: account the relationship between labels. The idea is that a properly\n154: constructed function can steer the model towards a more hierarchical structured\n155: internal representation. For nearest-neighbour classifiers, Verma et\n156: al.~\\cite{LearningHierarVerma2012} learn distances metrics for each node of the\n157: hierarchy tree by using ``context sensitive loss'' accounting for distances\n158: between nodes. Wu et al.~\\cite{LearningToMakWuHu2016} add on top of\n159: \\acrshort{cnn} parallel linked fully connected (FC) layers corresponding to\n160: hierarchy levels and used their outputs as regularized for standard cross\n161: entropy loss. Conversely, Alsallah et al.~\\cite{DoConvolutionaAlsall2017} add\n162: FC heads at different depth of an AlexNet model each of which contributing to\n163: the total loss. Bertinetto et al.~\\cite{MakingBetterMBertin2019} introduce\n164: ``hierarchical cross-entropy'', a loss function that incorporates class\n165: hierarchy information by factorizing the predicted class probabilities into\n166: conditional probabilities along the paths in the hierarchy tree, and weighting\n167: the cross entropy of each conditional probability based on the depth in the\n168: hierarchy. In a series of works~\\cite{ComplementObjeChen2019,\n169: ImprovingAdverChen2019, LearningWithHChen2019}, Chen et al. introduce\n170: ``complement entropy loss function'' and its hierarchical version. That loss\n171: revolves around lowering the model probabilities of the wrong classes instead\n172: of increasing the one associated to the correct class.\n173: \n174: % Custom Architecture\n175: Some of the aforementioned works~\\cite{LearningToMakWuHu2016,\n176: DoConvolutionaAlsall2017} implemented a custom architecture alongside with a\n177: custom loss function as well. Grag et al.~\\cite{LearningHierarGarg2022} propose\n178: a architecture similar to~\\cite{LearningToMakWuHu2016} (parallel FC layers per\n179: hierarchical level as classifiers) but put more emphasis on forcing structure\n180: in the feature space by using four terms loss function. The first term is the\n181: standard cross entropy on fine-grained labels while the second is the\n182: Jensen-Shannon divergence between the predictions of a coarse classifier and\n183: soft label distributions derived from the finer-grained classifier predictions.\n184: The others two term promoted a more discriminative (marginal loss) and a better\n185: oriented (geometric consistency loss) feature space. In the context of\n186: fine-grained visual classification, Chang et al.~\\cite{YourFlamingoChang2020}\n187: split the features vector in $K$-fold and use them to feed $K$ classifiers\n188: where $K$ is the number of level in the hierarchy. In the forward pass the\n189: features used in finer classifiers are also used in the coarser ones but a\n190: gradient controller block the gradient propagation avoiding that fine-grained\n191: features will be biased towards coarse-grained recognition. In this way there\n192: is a disentanglement of the features space but still fine-level features help\n193: coarse-level classifiers.\n194: \n195: \\subsection{Embeddings}\n196: \\label{subsec:embeddings}\n197: % Make use of semantic information in computer vision is not a new idea. In fact,\n198: % it was an active area of research before the advent of deep learning.\n199: % Researchers employed it to improve models classification\n200: % accuracy~\\cite{ScalableRecognNister2006, SemanticHierarMarsza2007,\n201: % ExploitingObjeZweig2007, LearningMultipKrizhe2009} and to cope with a lot of\n202: % classes~\\cite{WhatDoesClassDeng2010}. Accuracy was dramatically improved with\n203: % the introduction of CNNs and the interest in semantic information injection\n204: % faded. The recent revamped interest is concerned with different challenges:\n205: % Zero-Shot-Learning, fine-grained classification, model explainability and\n206: % quality of errors.\n207: \n208: Extracting semantic information from bare labels text using \\acrshort{lm} is a\n209: very flexible approach that do not required additional information about labels\n210: and, sometimes, not even the labels themselves. In image classification,\n211: \\acrfull{zsl} is a collection of techniques where a model is trained to\n212: recognize classes that were not present during\n213: training~\\cite{AnIntroductionSoysal2020}. This can be achieved by leveraging\n214: the capability of other pre-trained models and instilling such knowledge into\n215: the image classification model. DeViSE~\\cite{DeviseADeepFrome2013} use latent\n216: information extracted from big text corpus, Wikipedia, to build capable\n217: \\acrshort{zsl} model. The key idea was the use of the recently introduced\n218: learnable words embeddings~\\cite{EfficientEstimMikolo2013,\n219: DistributedRepMikolo2013}, later patented by Google as\n220: Word2Vec~\\cite{ComputingNumerMikolo2013}. It was shown\n221: in~\\cite{EvaluationOfOAkata2014, LabelEmbeddingAkata2015} that embeddings\n222: coming from different source (e.g. hierarchy and text corpora) can carry\n223: non-redundant information and can be combined to learn a better encoding. For\n224: that reason various hybrid approach, in the spirit of DeViSE, has been\n225: proposed. Akata et al.~\\cite{EvaluationOfOAkata2014} propose \\acrshort{zsl}\n226: model specifically geared towards fine-grained classification. Liu et\n227: al.~\\cite{HyperbolicVisuLiuS2020} move parts of the model pipeline in\n228: hyperbolic space arguing for its suitability regarding hierarchical\n229: representation, evidence supported by~\\cite{PoincareEmbeddNickel2017,\n230: HyperbolicEntaGanea2018}.\n231: \n232: % Talk a bit about cutting edge research and multimodal learning\n233: Nowadays it seems that embeddings, i.e. latent representation of information as\n234: real-valued vectors, are a powerful way to make models different talks and\n235: represent concepts in a somewhat similar fashion. Transformer\n236: architecture~\\cite{AttentionIsAlVaswan2017} was introduced in the context of\n237: Natural Language Processing. They proved to be a general-purpose differentiable\n238: computer: expressive (in the forward pass), optimizable (via backpropagation\n239: and gradient \n```\n\nCompile log (tail):\n```\nxmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (22 pages, 493094 bytes).\nPDF statistics:\n 432 PDF objects out of 1000 (max. 8388607)\n 349 compressed objects within 4 object streams\n 109 named destinations out of 1000 (max. 500000)\n 18 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/S1M0N38/master-thesis"} {"bib": false, "lane": "project", "file_edits": [{"file": "notes.cls", "search": "%% other packages\n\\RequirePackage[pdfusetitle]{hyperref}\n\\RequirePackage[capitalize,nameinlink,noabbrev]{cleveref}", "replace": "%% other packages\n\\RequirePackage[capitalize,nameinlink,noabbrev]{cleveref}", "type": "real"}, {"file": "notes.cls", "search": "\\RequirePackage{csquotes}", "replace": "\\RequirePackage[pdfusetitle]{hyperref}", "type": "real"}, {"file": "notes.cls", "search": "\\renewcommand\\maketitle{\n\t\\pagenumbering{Alph}\n\t\\begin{titlepage}", "replace": "\\renewcommand\\maketitle{\n\t\\begin{titlepage}", "type": "real"}, {"file": "notes.cls", "search": "\t\\end{titlepage}\n\t\\thispagestyle{empty}\n\t\\pagenumbering{arabic}\n}", "replace": "\t\\end{titlepage}\n}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["notes.cls"], "single_shot_visible": true, "error_lines": [{"line": 2124, "text": "LaTeX Error: Command \\@quotelevel already defined.", "file": "main.tex", "fileLabel": null}, {"line": 2127, "text": "LaTeX Error: Command \\@quotereset already defined.", "file": "main.tex", "fileLabel": null}, {"line": 18, "text": "Package cleveref Error: cleveref must be loaded after hyperref!.", "file": "main.tex", "fileLabel": null}], "log_tail": "age rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 38859 strings out of 467099\n 776995 string characters out of 5408265\n 1654933 words of memory out of 5000000\n 67598 multiletter control sequences out of 15000+600000\n 629882 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,5n,121p,1197b,854s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 54245 bytes).\nPDF statistics:\n 42 PDF objects out of 1000 (max. 8388607)\n 29 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 22 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2124: LaTeX Error: Command \\@quotelevel already defined.\n- line 2127: LaTeX Error: Command \\@quotereset already defined.\n- line 18: Package cleveref Error: cleveref must be loaded after hyperref!.\n\nProject files:\n- main.tex\n- notes.cls\n\nOther project files (edit them with ):\n\n`notes.cls` (full file, line-numbered):\n```\n1: %! Class = notes\n2: %! Author = Roberto Bochet\n3: \n4: \\NeedsTeXFormat{LaTeX2e}\n5: \\ProvidesClass{notes}[A class for engineering notes]\n6: \n7: \\LoadClass[12pt]{report}\n8: \n9: % codec\n10: \\RequirePackage[utf8]{inputenc}\n11: \n12: % geometry\n13: \\RequirePackage{geometry}\n14: \\geometry{\n15: \ta4paper,\n16: \tleft=30mm,\n17: \tright=30mm,\n18: \ttop=40mm,\n19: \tbottom=30mm\n20: }\n21: \\setlength{\\parindent}{0em}\n22: \\setlength{\\parskip}{0.5em}\n23: \n24: % sections counters\n25: \\setcounter{tocdepth}{3}\n26: \\setcounter{secnumdepth}{3}\n27: \n28: \n29: %% math\n30: \\RequirePackage{amssymb}\n31: \\RequirePackage{amsmath}\n32: \\RequirePackage{amsthm}\n33: \\RequirePackage{mathtools}\n34: \\RequirePackage[makeroom]{cancel} % to put a obliquos line on a math symbol to delete it\n35: \\RequirePackage{nicefrac} % to create fractions like a/b\n36: \n37: % math operators\n38: \\DeclarePairedDelimiter{\\norm}{\\lVert}{\\rVert}\n39: \\DeclarePairedDelimiter{\\abs}{\\lvert}{\\rvert}\n40: \n41: \\newcommand{\\Lie}[1]{\\mathcal{L}_{#1}}\n42: \\newcommand{\\Lieb}[2]{\\left[ #1, #2 \\right]}\n43: \\newcommand{\\ad}[1]{\\operatorname{ad}_{#1}}\n44: \\newcommand{\\Lebesgue}{\\mathcal{L}}\n45: \\newcommand{\\Lebesgueext}{\\Lebesgue_e}\n46: \n47: \\DeclareMathOperator{\\rad}{rad}\n48: \\DeclareMathOperator{\\sgn}{sgn}\n49: \\DeclareMathOperator{\\diag}{diag}\n50: \\DeclareMathOperator{\\rank}{rank}\n51: \n52: \\newcommand{\\pdiff}[2]{\\frac{\\partial #1}{\\partial #2}}\n53: \\newcommand{\\diff}[2]{\\frac{d #1}{d #2}}\n54: \n55: \\newcommand{\\trans}{\\mathsf{T}}\n56: \\newcommand{\\inv}{{-1}}\n57: \\newcommand{\\psinv}{\\dag}\n58: \n59: % math domains\n60: \\newcommand{\\Real}{\\mathbb{R}}\n61: \\newcommand{\\RealP}{\\Real^+}\n62: \\newcommand{\\RealN}{\\Real^-}\n63: \\newcommand{\\Complex}{\\mathbb{C}}\n64: \n65: % math mod\n66: \\newcommand{\\matr}[1]{\\boldsymbol{#1}}\n67: \\newcommand{\\vect}[1]{\\boldsymbol{#1}}\n68: \\newcommand{\\estimate}[1]{\\hat{#1}}\n69: \\newcommand{\\error}[1]{\\tilde{#1}}\n70: \\newcommand{\\reference}[1]{\\bar{#1}}\n71: \n72: %math snippets\n73: \\newtheorem{theorem}{Theorem}[chapter]\n74: \\newtheorem{corollary}{Corollary}[theorem]\n75: \\newtheorem{lemma}[theorem]{Lemma}\n76: \\newtheorem{conjecture}{Conjecture}[chapter]\n77: \\newtheorem{example}{Example}[chapter]\n78: \\newtheorem{definition}{Definition}[chapter]\n79: \n80: %% block diagram\n81: \\usepackage{tikz}\n82: \\usetikzlibrary{circuits}\n83: \\usetikzlibrary{shapes}\n84: \\usetikzlibrary{arrows}\n85: \\usetikzlibrary{positioning}\n86: \n87: \\tikzset{auto,>=latex', minimum size=0pt, node distance=1, font=\\fontsize{11}{11}\\selectfont}\n88: \n89: \\tikzstyle{pinstyle} = [pin edge={to-,thin,black}]\n90: \\tikzstyle{block} = [draw, fill=white, rectangle, minimum height=3em, minimum width=4em, text centered, align=center]\n91: \\tikzstyle{integrator} = [draw, fill=white, rectangle, minimum height=3em, minimum width=2em, font={$\\frac{1}{s}$}]\n92: \\tikzstyle{sum} = [draw, fill=white, circle, node distance=1cm]\n93: \\tikzstyle{input} = [coordinate]\n94: \\tikzstyle{output} = [coordinate]\n95: \\tikzstyle{gain} = [draw, isosceles triangle, minimum height = 3em, isosceles triangle apex angle=60]\n96: \\tikzstyle{spy} = [coordinate, inner sep=0, outer sep=0, minimum size=0]\n97: \\tikzstyle{node} = [draw, circle, fill, minimum size=2pt, inner sep=0pt, outer sep=0pt, anchor=center]\n98: \n99: %% other packages\n100: \\RequirePackage[pdfusetitle]{hyperref}\n101: \\RequirePackage[capitalize,nameinlink,noabbrev]{cleveref}\n102: \\RequirePackage{svg}\n103: \\RequirePackage{caption}\n104: \\RequirePackage{subcaption}\n105: \\RequirePackage{tabularx}\n106: \\RequirePackage{soul} % to highlight text\n107: \\RequirePackage{enumitem} % to create lists\n108: \\RequirePackage{csquotes}\n109: \n110: %% layout\n111: \\RequirePackage[stable]{footmisc}\n112: \\RequirePackage{imakeidx}\n113: \\RequirePackage[backend=biber]{biblatex}\n114: \n115: % title\n116: \\RequirePackage{ltxcmds}\n117: \\newcommand{\\IfPackageLoaded}[2]{\\ltx@ifpackageloaded{#1}{#2}{}}\n118: \n119: \\renewcommand\\maketitle{\n120: \t\\pagenumbering{Alph}\n121: \t\\begin{titlepage}\n122: \t\t\\centering\n123: \t\t\\vspace*{\\stretch{2}}\n124: \n125: \t\t\\Huge\\textbf{\\@title}\n126: \n127: \t\t\\vspace*{\\stretch{0.6}}\n128: \n129: \t\t\\Large\\emph{\\@author}\n130: \n131: \t\t\\bigskip\n132: \n133: \t\t\\large \\@date\n134: \n135: \t\t\\vspace*{\\stretch{5.0}}\n136: \t\t\\IfPackageLoaded{doclicense}{\n137: \t\t\t\\doclicenseImage[imagewidth=3cm]\n138: \n139: \t\t\t\\doclicenseLongText\n140: \t\t\t\\vspace*{\\stretch{0.3}}\n141: \t\t}\n142: \t\\end{titlepage}\n143: \t\\thispagestyle{empty}\n144: \t\\pagenumbering{arabic}\n145: }\n146: \n147: \\AtBeginDocument{\n148: \t\\makeindex[intoc]\n149: }\n150: \n151: %% usefull enviroments\n152: \\newenvironment{nb}\n153: {\n154: \t\\par\\vspace{\\abovedisplayskip}\\noindent\\begin{em}n.b.\\ \\ignorespaces\n155: }{\n156: \t\\end{em}\n157: }\n158: \n159: \\newenvironment{conditions}\n160: {\n161: \t\\par\\vspace{\\abovedisplayskip}\\noindent\\centering\\begin{tabular}{>{$}r<{$} @{${}:{}$} l}\n162: }{\n163: \t\\end{tabular}\\par\\vspace{\\belowdisplayskip}\n164: }\n165: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{notes}\n2: \n3: % defines the license\n4: \\usepackage[\n5: \ttype={CC},\n6: \tmodifier={by-sa},\n7: \tversion={4.0}\n8: ]{doclicense}\n9: \n10: % adds bibliography file\n11: %\\addbibresource{references.bib}\n12: \n13: \n14: \\title{Notes}\n15: \\author{Roberto Bochet}\n16: \n17: \n18: \\begin{document}\n19: \t\\maketitle\n20: \t\\printbibliography\n21: \t\\tableofcontents\n22: \n23: \n24: \t%% content\n25: \n26: \n27: \t\\printindex\n28: \\end{document}\n29: \n```\n\nCompile log (tail):\n```\nage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 38859 strings out of 467099\n 776995 string characters out of 5408265\n 1654933 words of memory out of 5000000\n 67598 multiletter control sequences out of 15000+600000\n 629882 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,5n,121p,1197b,854s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 54245 bytes).\nPDF statistics:\n 42 PDF objects out of 1000 (max. 8388607)\n 29 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 22 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\t\\end{titlepage}\n}\n=======\n\t\\end{titlepage}\n\t\\thispagestyle{empty}\n\t\\pagenumbering{arabic}\n}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\renewcommand\\maketitle{\n\t\\begin{titlepage}\n=======\n\\renewcommand\\maketitle{\n\t\\pagenumbering{Alph}\n\t\\begin{titlepage}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\RequirePackage[pdfusetitle]{hyperref}\n=======\n\\RequirePackage{csquotes}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n%% other packages\n\\RequirePackage[capitalize,nameinlink,noabbrev]{cleveref}\n=======\n%% other packages\n\\RequirePackage[pdfusetitle]{hyperref}\n\\RequirePackage[capitalize,nameinlink,noabbrev]{cleveref}\n>>>>>>> REPLACE\n", "id": "github2_RobertoBochet__cir-notes__1eec4e3", "doc": "github_multi2/RobertoBochet__cir-notes__1eec4e3", "mutation": "real", "source": "github", "repo": "RobertoBochet/cir-notes", "sha": "1eec4e39d93d073cf2fa7b4d6a07085c719d6676", "parent_sha": "cb9bba10e95ef03e8ec5ea73ec37879170d4470a", "license": "CC-BY-SA-4.0", "url": "https://github.com/RobertoBochet/cir-notes/commit/1eec4e39d93d073cf2fa7b4d6a07085c719d6676", "changed_files": ["notes.cls"], "original_root": "main.tex", "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS already defined.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2124: LaTeX Error: Command \\@quotelevel already defined.\n- line 2127: LaTeX Error: Command \\@quotereset already defined.\n- line 18: Package cleveref Error: cleveref must be loaded after hyperref!.\n\nProject files:\n- main.tex\n- notes.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{notes}\n2: \n3: % defines the license\n4: \\usepackage[\n5: \ttype={CC},\n6: \tmodifier={by-sa},\n7: \tversion={4.0}\n8: ]{doclicense}\n9: \n10: % adds bibliography file\n11: %\\addbibresource{references.bib}\n12: \n13: \n14: \\title{Notes}\n15: \\author{Roberto Bochet}\n16: \n17: \n18: \\begin{document}\n19: \t\\maketitle\n20: \t\\printbibliography\n21: \t\\tableofcontents\n22: \n23: \n24: \t%% content\n25: \n26: \n27: \t\\printindex\n28: \\end{document}\n29: \n```\n\nCompile log (tail):\n```\nage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 38859 strings out of 467099\n 776995 string characters out of 5408265\n 1654933 words of memory out of 5000000\n 67598 multiletter control sequences out of 15000+600000\n 629882 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,5n,121p,1197b,854s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 54245 bytes).\nPDF statistics:\n 42 PDF objects out of 1000 (max. 8388607)\n 29 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 22 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/RobertoBochet/cir-notes"} {"bib": false, "lane": "project", "file_edits": [{"file": "src/skills.tex", "search": " \\textbf{Programming Languages}{: Python, C++, C, SQL, VBA, C\\#, Java, Kotlin, Haskell} \\\\", "replace": " \\textbf{Programming Languages}{: Python, C++, SQL, VBA, C#, Java, Kotlin, Haskell} \\\\", "type": "real"}], "reported_file": "src/skills.tex", "fix_files": ["src/skills.tex"], "single_shot_visible": false, "error_lines": [{"line": 5, "text": "You can't use `macro parameter character #' in horizontal mode.", "file": "src/skills.tex", "fileLabel": "skills.tex"}], "log_tail": "ut' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 08AA50B5B0C549764BE46DFDF6213CF8;567.\n ) \nHere is how much of TeX's memory you used:\n 15868 strings out of 467099\n 283909 string characters out of 5408265\n 817839 words of memory out of 5000000\n 44958 multiletter control sequences out of 15000+600000\n 668879 words of font info for 73 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,11n,84p,297b,495s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 119995 bytes).\nPDF statistics:\n 65 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `src/skills.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- src/skills.tex line 5: You can't use `macro parameter character #' in horizontal mode.\n\nProject files:\n- LICENSE\n- README.md\n- custom-commands.tex\n- main.tex\n- src/achievements.tex\n- src/education.tex\n- src/experience.tex\n- src/heading.tex\n- src/skills.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: %-------------------------\n2: % Resume in Latex\n3: % Author : Audric Serador\n4: % Inspired by: https://github.com/sb2nov/resume\n5: % License : MIT\n6: %------------------------\n7: \n8: \\documentclass[letterpaper,11pt]{article}\n9: \n10: \\usepackage{fontawesome5}\n11: \\usepackage{latexsym}\n12: \\usepackage[empty]{fullpage}\n13: \\usepackage{titlesec}\n14: \\usepackage{marvosym}\n15: \\usepackage[usenames,dvipsnames]{color}\n16: \\usepackage{verbatim}\n17: \\usepackage{enumitem}\n18: \\usepackage[hidelinks]{hyperref}\n19: \\usepackage{fancyhdr}\n20: \\usepackage[english]{babel}\n21: \\usepackage{tabularx}\n22: \\usepackage{graphicx}\n23: \\usepackage{mwe} % for blindtext and example-image-a in example\n24: \\usepackage{wrapfig}\n25: \\usepackage{array}\n26: \n27: \\input{glyphtounicode}\n28: \n29: % Custom font\n30: \\usepackage[default]{lato}\n31: \n32: \\pagestyle{fancy}\n33: \\fancyhf{} % clear all header and footer fields\n34: \\fancyfoot{}\n35: \\renewcommand{\\headrulewidth}{0pt}\n36: \\renewcommand{\\footrulewidth}{0pt}\n37: \n38: % Adjust margins\n39: \\addtolength{\\oddsidemargin}{-0.6in}\n40: \\addtolength{\\evensidemargin}{-0.6in}\n41: \\addtolength{\\textwidth}{1in}\n42: \\addtolength{\\topmargin}{-.5in}\n43: \\addtolength{\\textheight}{1.0in}\n44: \n45: \\urlstyle{same}\n46: \n47: \\raggedbottom\n48: \\raggedright\n49: \\setlength{\\tabcolsep}{0in}\n50: \n51: % Sections formatting\n52: \\titleformat{\\section}{\n53: \\vspace{-4pt}\\scshape\\raggedright\\large\n54: }{}{0em}{}[\\color{black}\\titlerule\\vspace{-5pt}]\n55: \n56: % Ensure that generate pdf is machine readable/ATS parsable\n57: \\pdfgentounicode=1\n58: \n59: %-------------------------%\n60: % Custom commands\n61: \\begin{document}\n62: \\include{custom-commands}\n63: \n64: %-------------------------------------------%\n65: %%%%%% RESUME STARTS HERE %%%%%\n66: \n67: %----------HEADING----------%\n68: \\input{src/heading}\n69: \n70: %-----------EDUCATION-----------%\n71: \\input{src/education.tex}\n72: \n73: %-----------WORK EXPERIENCE & PROJECTS-----------%\n74: \\input{src/experience.tex}\n75: \n76: %-----------SKILLS-----------%\n77: \\input{src/skills.tex}\n78: \n79: %-----------ACHIEVEMENTS & EXTRACURRICULARS-----------%\n80: \\input{src/achievements.tex}\n81: \n82: %-------------------------------------------%\n83: \\end{document}\n84: \n```\n\nCurrent content of `src/skills.tex` (full file, line-numbered):\n```\n1: %-----------SKILLS-----------%\n2: \\section{Skills}\n3: \\begin{itemize}[leftmargin=0.15in, label={}]\n4: \\small{\\item{\n5: \\textbf{Programming Languages}{: Python, C++, SQL, VBA, C#, Java, Kotlin, Haskell} \\\\\n6: \\textbf{Languages}{: English (native), Spanish (A2), Japanese \\& Mandarin (elementary)} \\\\\n7: }}\n8: \\end{itemize}\n9: \n```\n\nCompile log (tail):\n```\nut' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 08AA50B5B0C549764BE46DFDF6213CF8;567.\n ) \nHere is how much of TeX's memory you used:\n 15868 strings out of 467099\n 283909 string characters out of 5408265\n 817839 words of memory out of 5000000\n 44958 multiletter control sequences out of 15000+600000\n 668879 words of font info for 73 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,11n,84p,297b,495s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 119995 bytes).\nPDF statistics:\n 65 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\textbf{Programming Languages}{: Python, C++, SQL, VBA, C#, Java, Kotlin, Haskell} \\\\\n=======\n \\textbf{Programming Languages}{: Python, C++, C, SQL, VBA, C\\#, Java, Kotlin, Haskell} \\\\\n>>>>>>> REPLACE\n", "id": "github2_notacountry__CV__18df83b", "doc": "github_multi2/notacountry__CV__18df83b", "mutation": "real", "source": "github", "repo": "notacountry/CV", "sha": "18df83b80c775f4f5871b24ac5ce046232dea15a", "parent_sha": "b06eacf87c213d60c28a369cd3c43442897233fd", "license": "MIT", "url": "https://github.com/notacountry/CV/commit/18df83b80c775f4f5871b24ac5ce046232dea15a", "changed_files": ["src/skills.tex"], "original_root": "resume.tex", "n_files": 7, "engine": "pdflatex", "error_category": "You can'X' in horizontal mode.", "prompt_v1": "The LaTeX file `src/skills.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- src/skills.tex line 5: You can't use `macro parameter character #' in horizontal mode.\n\nProject files:\n- LICENSE\n- README.md\n- custom-commands.tex\n- main.tex\n- src/achievements.tex\n- src/education.tex\n- src/experience.tex\n- src/heading.tex\n- src/skills.tex\n\nCurrent content of `src/skills.tex` (full file, line-numbered):\n```\n1: %-----------SKILLS-----------%\n2: \\section{Skills}\n3: \\begin{itemize}[leftmargin=0.15in, label={}]\n4: \\small{\\item{\n5: \\textbf{Programming Languages}{: Python, C++, SQL, VBA, C#, Java, Kotlin, Haskell} \\\\\n6: \\textbf{Languages}{: English (native), Spanish (A2), Japanese \\& Mandarin (elementary)} \\\\\n7: }}\n8: \\end{itemize}\n9: \n```\n\nCompile log (tail):\n```\nut' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 08AA50B5B0C549764BE46DFDF6213CF8;567.\n ) \nHere is how much of TeX's memory you used:\n 15868 strings out of 467099\n 283909 string characters out of 5408265\n 817839 words of memory out of 5000000\n 44958 multiletter control sequences out of 15000+600000\n 668879 words of font info for 73 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,11n,84p,297b,495s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 119995 bytes).\nPDF statistics:\n 65 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/notacountry/CV"} {"bib": false, "lane": "project", "file_edits": [{"file": "sections/stlc/term-level-metavars.tex", "search": "\\subsection{Metavariable Substitution}\nMetavariable substitution takes a term $t$ in $\\Delta$ with holes in $H$, and a function $f$ (called a meta substitution) sending holes in $H$ over $\\Gamma$ to terms in $\\Gamma, \\Delta$ with holes in $S$.\nIt produces a term in $\\Delta$ with holes in $S$.\n\nMuch like CAS, it acts recursively on each term constructor.\nOn variables, it is the identity function, directly returning the variable.\nOn application, it recurses down both sides of the application.\nOn abstraction (and any binder), it weakens $f$ to produce a meta substitution $f'$, sending holes in $H$ over $\\Gamma, x$ to terms in $\\Gamma, \\Delta, x$ with holes in $S$.\nWe then perform metavariable substitution on the body of the abstraction with $f'$.\n\nThe metavariable case is, naturally, the most complex.\nGiven a metavariable $?m[\\theta]$, where $\\theta : \\Delta \\to \\Gamma$, the algorithm is as follows:\n\\begin{itemize}\n\\item Perform metavariable substitution with $f$ on $\\theta$ to get a substitution $\\theta'$ with holes in $S$ instead of $H$.\n\\item Take the identity substitution in $\\Delta$, and extend it with $\\theta'$ to get a substitution $\\theta''$ that maps $\\Gamma, \\Delta$ to $\\Delta$, with holes in $S$.\n\\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma, \\Delta$ with holes in $S$.\n\\item Perform capture-avoiding substitution on $t$ with the substitution $\\theta''$.", "replace": "\\subsection{Meta Substitution\nMeta substitution is a form of monadic bind.\nIt takes a metavariable $m$ , consisting of a hole $H$ in $\\Gamma$, and a renaming $\\theta$ from $\\Gamma$ to $\\Delta$ (i.e. an environment for $\\Gamma$ in context $\\Delta$ with holes in $H$), and a renaming $f$ from terms in $\\Gamma$ over $H$ to terms in $\\Gamma$ extended by $\\Delta$ over $S$.\nIt produces a term in $\\Delta$ over $S$ as follows:\n\\begin{itemize}\n\\item Perform meta substitution on $\\theta$ to get a renaming $\\theta'$ with holes in $S$ instead of $H$.\n\\item Take the identity renaming in $\\Gamma$, and extend it with $\\theta'$ to get a renaming $\\theta''$ that maps $\\Gamma ++ \\Delta$ to $\\Delta$, with holes in $S$.\n\\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma ++ \\Delta$ with holes in $S$.\n\\item Perform capture-avoiding substitution on $t$ with the renaming $\\theta''$.", "type": "real"}, {"file": "sections/stlc/term-level-metavars.tex", "search": "Metavariable substitution corresponds to a form of monadic bind.", "replace": "\\[\n t >>= (m \\in H_A\\Gamma \\mapsto \\Gamma, \\Delta \\vdash M : A)\n\\]", "type": "real"}], "reported_file": "main.tex", "fix_files": ["sections/stlc/term-level-metavars.tex"], "single_shot_visible": false, "error_lines": [{"line": 75, "text": "File ended while scanning use of \\@xdblarg.", "file": "main.tex", "fileLabel": null}], "log_tail": "ion exceptions out of 8191\n 117i,14n,121p,693b,1301s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (12 pages, 176362 bytes).\nPDF statistics:\n 194 PDF objects out of 1000 (max. 8388607)\n 150 compressed objects within 2 object streams\n 61 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 75: File ended while scanning use of \\@xdblarg.\n\nProject files:\n- main.tex\n- refs.bib\n- sections/dependent/singletons.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nOther project files (edit them with ):\n\n`sections/stlc/base.tex` (full file, line-numbered):\n```\n1: \\section{Base STLC}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: \\end{bnf}\n19: \n20: \\subsection{Typing Rules}\n21: \\begin{figure*}[h]\n22: \\[\n23: \\inference[Base]{}\n24: {\\vdash \\Base : \\Type}\n25: \\quad\n26: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n27: {\\vdash \\tau \\to \\sigma : \\Type}\n28: \\]\n29: \n30: \\caption*{Kinding Rules}\n31: \\label{fig:base-stlc-kinding}\n32: \\end{figure*}\n33: \n34: \\begin{figure*}[h]\n35: \\[\n36: \\inference[Var]{x : \\tau \\in \\Gamma}\n37: {\\Gamma \\vdash x : \\tau}\n38: \\quad\n39: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n40: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n41: \\]\n42: \\[\n43: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma}\n44: {\\Gamma \\vdash f x : \\tau}\n45: \\]\n46: \n47: \\caption*{Typing Rules}\n48: \\label{fig:base-stlc-typing}\n49: \\end{figure*}\n50: \n51: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n52: \n```\n\n`sections/stlc/type-level-metavars.tex` (full file, line-numbered):\n```\n1: \\section{STLC with Type-Level Meta-Variables}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: | $?m$ : Meta-Variable\n19: \\end{bnf}\n20: \n21: \\hfill\\break\n22: $m \\in M$ is a (fixed) set of meta-variables.\n23: \n24: \\subsection{Typing Rules}\n25: \\begin{figure*}[h]\n26: \\[\n27: \\inference[Base]{}\n28: {\\vdash \\Base : \\Type}\n29: \\quad\n30: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n31: {\\vdash \\tau \\to \\sigma : \\Type}\n32: \\]\n33: \\[\n34: \\inference[M-Var]{m \\in M}\n35: {\\vdash ?m : \\Type}\n36: \\]\n37: \n38: \\caption*{Kinding Rules}\n39: \\label{fig:type-mvar-stlc-kinding}\n40: \\end{figure*}\n41: \n42: \\begin{figure*}[h]\n43: \\[\n44: \\inference[]{}\n45: {\\Conv{\\Base}{\\Base}}\n46: \\quad\n47: \\inference[]{\\Conv{\\tau}{\\tau'} & \\Conv{\\sigma}{\\sigma'}}\n48: {\\Conv{\\tau \\to \\sigma}{\\tau' \\to \\sigma'}}\n49: \\]\n50: \\[\n51: \\inference[]{}\n52: {\\Conv{?m}{\\Base}}\n53: \\quad\n54: \\inference[]{}\n55: {\\Conv{?m}{\\tau \\to \\sigma}}\n56: \\]\n57: \n58: \\caption*{Convertibility Relation $\\Conv{}{}$ on Types}\n59: \\label{fig:type-mvar-stlc-conv}\n60: \\end{figure*}\n61: \n62: Convertibility is subject to constraints. As an example, if we have the constraint that $?m = \\Base$, then we cannot apply the $\\Conv{?m}{\\tau \\to \\sigma}$ rule.\n63: \n64: \\begin{figure*}[h]\n65: \\[\n66: \\inference[Var]{x : \\tau \\in \\Gamma}\n67: {\\Gamma \\vdash x : \\tau}\n68: \\quad\n69: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n70: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n71: \\]\n72: \\[\n73: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n74: {\\Gamma \\vdash f x : \\tau}\n75: \\]\n76: \n77: % replace sigma with sigma' in func app, and then add convertibility constraint\n78: \\caption*{Typing Rules}\n79: \\label{fig:type-mvar-stlc-typing}\n80: \\end{figure*}\n81: \n82: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n83: \n84: In \\Elim{$\\to$}, we enforce a constraint that $\\sigma = \\sigma'$.\n85: \n```\n\n`sections/stlc/term-level-metavars.tex` (head and lines matching the log, line-numbered):\n```\n1: \\section{STLC with Term-Level Meta-Variables}\n2: \n3: \\subsection{Syntax}\n4: \\begin{bnf}\n5: $t$ : \\textsf{Term} ::=\n6: | $x$ : Variables\n7: | $t$ $s$ : Function Application\n8: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n9: | $?m$ : Meta-variable $m \\in M$\n10: \\end{bnf}\n11: \n12: \\hfill\\break\n13: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n14: Assume a fixed set $M$ of meta-variables.\n15: \\hfill\\break\n16: \n17: \\noindent\n18: \\begin{bnf}\n19: $\\tau$ : \\textsf{Type} ::=\n20: | $\\Base$ : Base type\n21: | $\\tau \\to \\sigma$ : Function type\n22: \\end{bnf}\n23: \n24: \\hfill\\break\n25: \n26: \n27: \\subsection{Typing Rules}\n28: \\begin{figure*}[h]\n29: \\[\n30: \\inference[Base]{}\n```\n\n`sections/dependent/singletons.tex` (head and lines matching the log, line-numbered):\n```\n1: \\section{Dependent Types via Singletons}\n2: When moving from STLC to dependent types, our judgements themselves become more complicated.\n3: To keep things simple, we'll only consider the simplest possible dependent type: the singleton.\n4: In order to make the calculus non-trivial, we'll include the booleans as a base type.\n5: \n6: \\subsection{Presyntax}\n7: Our calculus is defined over precontexts $\\Gamma$, pretypes $A$, and preterms $t, c, e$.\n8: \n9: \\begin{bnf}\n10: $\\Gamma$ ::=\n11: | $\\cdot$ : Empty context\n12: | $\\Gamma, x \\colon S$ : Variable weakening\n13: | $\\Gamma, (x \\colon A) \\equiv t$ : Definition weakening\n14: ;;\n15: $A$ ::=\n16: | $\\Bool$ : Booleans\n17: | $\\Singleton[A][t]$ : The singleton of $t \\,\\colon A$\n18: ;;\n19: $t, c, e$ ::=\n20: | $\\true$ : Boolean value constructors\n21: | $\\false$\n22: | $\\when{c}{x}{A}{t}{e}$ : Boolean eliminator\n23: | $\\val[A][t]$ : Value constructor for $\\Singleton[A][t]$\n24: | $x, y, z, ...$ : Variables\n25: \\end{bnf}\n26: \n27: Intuition for the boolean eliminator is that it acts like if-then-else, except it also binds the value of $c$ to $x$, and makes this available for $A$ to use.\n28: \n29: \\subsection{Judgements}\n30: \\subsubsection{Contexts}\n```\n\n`refs.bib` (full file, line-numbered):\n```\n1: @article{gundry2013TutorialImplementationDynamic,\n2: title = {A Tutorial Implementation of Dynamic Pattern Unification},\n3: author = {Gundry, Adam and McBride, Conor},\n4: date = {2013},\n5: abstract = {A higher-order unification algorithm is an essential component of a dependently typed programming language implementation, and understanding its capabilities is important if dependently typed programmers are to become productive. Miller showed that, for simply typed λ-terms in the pattern fragment (where metavariables are applied to spines of distinct bound variables), unification is decidable and most general unifiers exist. We describe an algorithm for pattern unification in a full-spectrum dependent type theory with dependent pairs (Σ-types). The algorithm exploits heterogeneous equality and a novel concept of ‘twin’ free variables to handle dependency. Moreover, it supports dynamic management of constraints, postponing equations that fall outside the pattern fragment in case other equations make them simpler. We aim to make sense both to language implementors and users, and to this end present our algorithm as a Haskell program.},\n6: langid = {english},\n7: file = {zotero://open-pdf/library/items/DK5GLZ4I?Gundry and McBride - A tutorial implementation of dynamic pattern unification.pdf}\n8: }\n9: \n10: @online{gundry2013TypeInferenceHaskell,\n11: title = {Type Inference, {{Haskell}} and Dependent Types},\n12: author = {Gundry, Adam Michael},\n13: date = {2013},\n14: file = {zotero://open-pdf/library/items/4MBY9BIP?Gundry - 2013 - Type inference, Haskell and dependent types.pdf;~/Documents/zotero/storage/JSF3CRWU/fq977t858.html}\n15: }\n16: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Prelude\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \\usepackage{todonotes}\n17: \\usepackage{float} % force positioning\n18: \n19: % Bibliography\n20: \\usepackage[\n21: style=alphabetic,\n22: sorting=ynt\n23: ]{biblatex}\n24: \\addbibresource{refs.bib}\n25: \n26: % Relevant packages\n27: \\usepackage{simplebnf}\n28: \\usepackage{semantic}\n29: \n30: % General newcommands\n31: \\newcommand{\\jtodo}[1]{\\todo[inline,color=blue!40]{JW: TODO: #1}}\n32: \\newcommand{\\jq}[1]{\\todo[inline,color=blue!40]{JW: #1}}\n33: \n34: % Typeface defs\n35: \\newcommand\\jg\\textbf\n36: \\newcommand\\ty\\textrm\n37: \\newcommand\\tm\\textsf\n38: \n39: % Inference rule definitions\n40: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n41: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n42: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n43: \n44: % Judgement definitions\n45: \\newcommand{\\ctx}[1]{#1 \\jg{ ctx}}\n46: \\newcommand{\\type}[1]{#1 \\jg{ type}}\n47: \n48: % Relation definitions\n49: \\newcommand{\\twin}[2]{#1 \\frown #2}\n50: \n51: % Type definitions\n52: \\newcommand{\\Base}[0]{\\ty{Base}}\n53: \\newcommand{\\Type}[0]{\\ty{Type}}\n54: \n55: \\NewDocumentCommand{\\Singleton}{o o}{\\ty{Singleton}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n56: \\NewDocumentCommand{\\val}{o o}{\\tm{val}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n57: \\newcommand{\\letval}[3]{\\tm{let val } #1 = #2 \\tm{ in } #3}\n58: \n59: \\newcommand{\\Bool}[0]{\\ty{Bool}}\n60: \\newcommand{\\true}[0]{\\tm{true}}\n61: \\newcommand{\\false}[0]{\\tm{false}}\n62: \\newcommand{\\ite}[3]{\\tm{if } #1 \\tm{ then } #2 \\tm{ else } #3}\n63: \\newcommand{\\when}[5]{\\tm{when } #1 \\tm{ as } #2 \\tm{ in } #3 \\tm{ then } #4 \\tm{ else } #5}\n64: \n65: \\newcommand{\\ford}[0]{\\tm{ford}}\n66: \n67: % Content\n68: \\begin{document}\n69: \\tableofcontents\n70: %\\todotoc\\listoftodos\n71: \\chapter{STLC}\n72: \n73: \\include{sections/stlc/base}\n74: \\newpage\\include{sections/stlc/type-level-metavars}\n75: \\newpage\\include{sections/stlc/term-level-metavars}\n76: \n77: \\chapter{Dependent Types}\n78: \\include{sections/dependent/singletons}\n79: \n80: \\printbibliography\n81: \n82: \\end{document}\n83: \n```\n\nCompile log (tail):\n```\nion exceptions out of 8191\n 117i,14n,121p,693b,1301s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (12 pages, 176362 bytes).\nPDF statistics:\n 194 PDF objects out of 1000 (max. 8388607)\n 150 compressed objects within 2 object streams\n 61 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\[\n t >>= (m \\in H_A\\Gamma \\mapsto \\Gamma, \\Delta \\vdash M : A)\n\\]\n=======\nMetavariable substitution corresponds to a form of monadic bind.\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\subsection{Meta Substitution\nMeta substitution is a form of monadic bind.\nIt takes a metavariable $m$ , consisting of a hole $H$ in $\\Gamma$, and a renaming $\\theta$ from $\\Gamma$ to $\\Delta$ (i.e. an environment for $\\Gamma$ in context $\\Delta$ with holes in $H$), and a renaming $f$ from terms in $\\Gamma$ over $H$ to terms in $\\Gamma$ extended by $\\Delta$ over $S$.\nIt produces a term in $\\Delta$ over $S$ as follows:\n\\begin{itemize}\n\\item Perform meta substitution on $\\theta$ to get a renaming $\\theta'$ with holes in $S$ instead of $H$.\n\\item Take the identity renaming in $\\Gamma$, and extend it with $\\theta'$ to get a renaming $\\theta''$ that maps $\\Gamma ++ \\Delta$ to $\\Delta$, with holes in $S$.\n\\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma ++ \\Delta$ with holes in $S$.\n\\item Perform capture-avoiding substitution on $t$ with the renaming $\\theta''$.\n=======\n\\subsection{Metavariable Substitution}\nMetavariable substitution takes a term $t$ in $\\Delta$ with holes in $H$, and a function $f$ (called a meta substitution) sending holes in $H$ over $\\Gamma$ to terms in $\\Gamma, \\Delta$ with holes in $S$.\nIt produces a term in $\\Delta$ with holes in $S$.\n\nMuch like CAS, it acts recursively on each term constructor.\nOn variables, it is the identity function, directly returning the variable.\nOn application, it recurses down both sides of the application.\nOn abstraction (and any binder), it weakens $f$ to produce a meta substitution $f'$, sending holes in $H$ over $\\Gamma, x$ to terms in $\\Gamma, \\Delta, x$ with holes in $S$.\nWe then perform metavariable substitution on the body of the abstraction with $f'$.\n\nThe metavariable case is, naturally, the most complex.\nGiven a metavariable $?m[\\theta]$, where $\\theta : \\Delta \\to \\Gamma$, the algorithm is as follows:\n\\begin{itemize}\n\\item Perform metavariable substitution with $f$ on $\\theta$ to get a substitution $\\theta'$ with holes in $S$ instead of $H$.\n\\item Take the identity substitution in $\\Delta$, and extend it with $\\theta'$ to get a substitution $\\theta''$ that maps $\\Gamma, \\Delta$ to $\\Delta$, with holes in $S$.\n\\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma, \\Delta$ with holes in $S$.\n\\item Perform capture-avoiding substitution on $t$ with the substitution $\\theta''$.\n>>>>>>> REPLACE\n", "id": "github2_jacobjwalters__calculi__9e64ab9", "doc": "github_multi2/jacobjwalters__calculi__9e64ab9", "mutation": "real", "source": "github", "repo": "jacobjwalters/calculi", "sha": "9e64ab938465966d6210f203d4c92fc0ad7a0c31", "parent_sha": "beda89acba1054f9e2b3a86011d8a9a43fd18813", "license": "MIT", "url": "https://github.com/jacobjwalters/calculi/commit/9e64ab938465966d6210f203d4c92fc0ad7a0c31", "changed_files": ["sections/stlc/term-level-metavars.tex"], "original_root": "main.tex", "n_files": 6, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 75: File ended while scanning use of \\@xdblarg.\n\nProject files:\n- main.tex\n- refs.bib\n- sections/dependent/singletons.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Prelude\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \\usepackage{todonotes}\n17: \\usepackage{float} % force positioning\n18: \n19: % Bibliography\n20: \\usepackage[\n21: style=alphabetic,\n22: sorting=ynt\n23: ]{biblatex}\n24: \\addbibresource{refs.bib}\n25: \n26: % Relevant packages\n27: \\usepackage{simplebnf}\n28: \\usepackage{semantic}\n29: \n30: % General newcommands\n31: \\newcommand{\\jtodo}[1]{\\todo[inline,color=blue!40]{JW: TODO: #1}}\n32: \\newcommand{\\jq}[1]{\\todo[inline,color=blue!40]{JW: #1}}\n33: \n34: % Typeface defs\n35: \\newcommand\\jg\\textbf\n36: \\newcommand\\ty\\textrm\n37: \\newcommand\\tm\\textsf\n38: \n39: % Inference rule definitions\n40: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n41: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n42: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n43: \n44: % Judgement definitions\n45: \\newcommand{\\ctx}[1]{#1 \\jg{ ctx}}\n46: \\newcommand{\\type}[1]{#1 \\jg{ type}}\n47: \n48: % Relation definitions\n49: \\newcommand{\\twin}[2]{#1 \\frown #2}\n50: \n51: % Type definitions\n52: \\newcommand{\\Base}[0]{\\ty{Base}}\n53: \\newcommand{\\Type}[0]{\\ty{Type}}\n54: \n55: \\NewDocumentCommand{\\Singleton}{o o}{\\ty{Singleton}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n56: \\NewDocumentCommand{\\val}{o o}{\\tm{val}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n57: \\newcommand{\\letval}[3]{\\tm{let val } #1 = #2 \\tm{ in } #3}\n58: \n59: \\newcommand{\\Bool}[0]{\\ty{Bool}}\n60: \\newcommand{\\true}[0]{\\tm{true}}\n61: \\newcommand{\\false}[0]{\\tm{false}}\n62: \\newcommand{\\ite}[3]{\\tm{if } #1 \\tm{ then } #2 \\tm{ else } #3}\n63: \\newcommand{\\when}[5]{\\tm{when } #1 \\tm{ as } #2 \\tm{ in } #3 \\tm{ then } #4 \\tm{ else } #5}\n64: \n65: \\newcommand{\\ford}[0]{\\tm{ford}}\n66: \n67: % Content\n68: \\begin{document}\n69: \\tableofcontents\n70: %\\todotoc\\listoftodos\n71: \\chapter{STLC}\n72: \n73: \\include{sections/stlc/base}\n74: \\newpage\\include{sections/stlc/type-level-metavars}\n75: \\newpage\\include{sections/stlc/term-level-metavars}\n76: \n77: \\chapter{Dependent Types}\n78: \\include{sections/dependent/singletons}\n79: \n80: \\printbibliography\n81: \n82: \\end{document}\n83: \n```\n\nCompile log (tail):\n```\nion exceptions out of 8191\n 117i,14n,121p,693b,1301s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (12 pages, 176362 bytes).\nPDF statistics:\n 194 PDF objects out of 1000 (max. 8388607)\n 150 compressed objects within 2 object streams\n 61 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/jacobjwalters/calculi"} {"bib": false, "lane": "project", "file_edits": [{"file": "sections/dependent/singletons.tex", "search": " \\tag{$\\Bool$-$\\beta_{\\true}$}", "replace": " \\tag{$\\Bool$-$\\beta$_1}", "type": "real"}, {"file": "sections/dependent/singletons.tex", "search": " \\tag{$\\Bool$-$\\beta_{\\false}2$}", "replace": " \\tag{$\\Bool$-$\\beta$_2}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["sections/dependent/singletons.tex"], "single_shot_visible": false, "error_lines": [{"line": 239, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}, {"line": 244, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "pe1/public/amsfonts/cm/cmbx10.pfb\n>\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (11 pages, 189977 bytes).\nPDF statistics:\n 203 PDF objects out of 1000 (max. 8388607)\n 156 compressed objects within 2 object streams\n 62 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 239: Missing $ inserted.\n- line 244: Missing $ inserted.\n\nProject files:\n- main.tex\n- refs.bib\n- sections/dependent/singletons.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nOther project files (edit them with ):\n\n`refs.bib` (full file, line-numbered):\n```\n1: @article{gundry2013TutorialImplementationDynamic,\n2: title = {A Tutorial Implementation of Dynamic Pattern Unification},\n3: author = {Gundry, Adam and McBride, Conor},\n4: date = {2013},\n5: abstract = {A higher-order unification algorithm is an essential component of a dependently typed programming language implementation, and understanding its capabilities is important if dependently typed programmers are to become productive. Miller showed that, for simply typed λ-terms in the pattern fragment (where metavariables are applied to spines of distinct bound variables), unification is decidable and most general unifiers exist. We describe an algorithm for pattern unification in a full-spectrum dependent type theory with dependent pairs (Σ-types). The algorithm exploits heterogeneous equality and a novel concept of ‘twin’ free variables to handle dependency. Moreover, it supports dynamic management of constraints, postponing equations that fall outside the pattern fragment in case other equations make them simpler. We aim to make sense both to language implementors and users, and to this end present our algorithm as a Haskell program.},\n6: langid = {english},\n7: file = {zotero://open-pdf/library/items/DK5GLZ4I?Gundry and McBride - A tutorial implementation of dynamic pattern unification.pdf}\n8: }\n9: \n10: @online{gundry2013TypeInferenceHaskell,\n11: title = {Type Inference, {{Haskell}} and Dependent Types},\n12: author = {Gundry, Adam Michael},\n13: date = {2013},\n14: file = {zotero://open-pdf/library/items/4MBY9BIP?Gundry - 2013 - Type inference, Haskell and dependent types.pdf;~/Documents/zotero/storage/JSF3CRWU/fq977t858.html}\n15: }\n16: \n```\n\n`sections/stlc/base.tex` (full file, line-numbered):\n```\n1: \\section{Base STLC}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: \\end{bnf}\n19: \n20: \\subsection{Typing Rules}\n21: \\begin{figure*}[h]\n22: \\[\n23: \\inference[Base]{}\n24: {\\vdash \\Base : \\Type}\n25: \\quad\n26: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n27: {\\vdash \\tau \\to \\sigma : \\Type}\n28: \\]\n29: \n30: \\caption*{Kinding Rules}\n31: \\label{fig:base-stlc-kinding}\n32: \\end{figure*}\n33: \n34: \\begin{figure*}[h]\n35: \\[\n36: \\inference[Var]{x : \\tau \\in \\Gamma}\n37: {\\Gamma \\vdash x : \\tau}\n38: \\quad\n39: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n40: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n41: \\]\n42: \\[\n43: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma}\n44: {\\Gamma \\vdash f x : \\tau}\n45: \\]\n46: \n47: \\caption*{Typing Rules}\n48: \\label{fig:base-stlc-typing}\n49: \\end{figure*}\n50: \n51: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n52: \n```\n\n`sections/stlc/type-level-metavars.tex` (full file, line-numbered):\n```\n1: \\section{STLC with Type-Level Meta-Variables}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: | $?m$ : Meta-Variable\n19: \\end{bnf}\n20: \n21: \\hfill\\break\n22: $m \\in M$ is a (fixed) set of meta-variables.\n23: \n24: \\subsection{Typing Rules}\n25: \\begin{figure*}[h]\n26: \\[\n27: \\inference[Base]{}\n28: {\\vdash \\Base : \\Type}\n29: \\quad\n30: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n31: {\\vdash \\tau \\to \\sigma : \\Type}\n32: \\]\n33: \\[\n34: \\inference[M-Var]{m \\in M}\n35: {\\vdash ?m : \\Type}\n36: \\]\n37: \n38: \\caption*{Kinding Rules}\n39: \\label{fig:type-mvar-stlc-kinding}\n40: \\end{figure*}\n41: \n42: \\begin{figure*}[h]\n43: \\[\n44: \\inference[]{}\n45: {\\Conv{\\Base}{\\Base}}\n46: \\quad\n47: \\inference[]{\\Conv{\\tau}{\\tau'} & \\Conv{\\sigma}{\\sigma'}}\n48: {\\Conv{\\tau \\to \\sigma}{\\tau' \\to \\sigma'}}\n49: \\]\n50: \\[\n51: \\inference[]{}\n52: {\\Conv{?m}{\\Base}}\n53: \\quad\n54: \\inference[]{}\n55: {\\Conv{?m}{\\tau \\to \\sigma}}\n56: \\]\n57: \n58: \\caption*{Convertibility Relation $\\Conv{}{}$ on Types}\n59: \\label{fig:type-mvar-stlc-conv}\n60: \\end{figure*}\n61: \n62: Convertibility is subject to constraints. As an example, if we have the constraint that $?m = \\Base$, then we cannot apply the $\\Conv{?m}{\\tau \\to \\sigma}$ rule.\n63: \n64: \\begin{figure*}[h]\n65: \\[\n66: \\inference[Var]{x : \\tau \\in \\Gamma}\n67: {\\Gamma \\vdash x : \\tau}\n68: \\quad\n69: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n70: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n71: \\]\n72: \\[\n73: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n74: {\\Gamma \\vdash f x : \\tau}\n75: \\]\n76: \n77: % replace sigma with sigma' in func app, and then add convertibility constraint\n78: \\caption*{Typing Rules}\n79: \\label{fig:type-mvar-stlc-typing}\n80: \\end{figure*}\n81: \n82: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n83: \n84: In \\Elim{$\\to$}, we enforce a constraint that $\\sigma = \\sigma'$.\n85: \n```\n\n`sections/stlc/term-level-metavars.tex` (full file, line-numbered):\n```\n1: \\section{STLC with Term-Level Meta-Variables}\n2: \n3: \\subsection{Syntax}\n4: \\begin{bnf}\n5: $t$ : \\textsf{Term} ::=\n6: | $x$ : Variables\n7: | $t$ $s$ : Function Application\n8: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n9: | $?m$ : Meta-variable $m \\in M$\n10: \\end{bnf}\n11: \n12: \\hfill\\break\n13: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n14: Assume a fixed set $M$ of meta-variables.\n15: \\hfill\\break\n16: \n17: \\noindent\n18: \\begin{bnf}\n19: $\\tau$ : \\textsf{Type} ::=\n20: | $\\Base$ : Base type\n21: | $\\tau \\to \\sigma$ : Function type\n22: \\end{bnf}\n23: \n24: \\hfill\\break\n25: \n26: \n27: \\subsection{Typing Rules}\n28: \\begin{figure*}[h]\n29: \\[\n30: \\inference[Base]{}\n31: {\\vdash \\Base : \\Type}\n32: \\quad\n33: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n34: {\\vdash \\tau \\to \\sigma : \\Type}\n35: \\]\n36: \\caption*{Kinding Rules}\n37: \\label{fig:term-mvar-stlc-kinding}\n38: \\end{figure*}\n39: \n40: \n41: \\begin{figure*}[h]\n42: \\[\n43: \\inference[Var]{x : \\tau \\in \\Gamma}\n44: {\\Gamma \\vdash x : \\tau}\n45: \\]\n46: \\[\n47: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n48: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n49: \\quad\n50: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n51: {\\Gamma \\vdash f x : \\tau}\n52: \\]\n53: \n54: \\[\n55: \\inference[?m]\n56: {m \\in H_A\\Delta \\quad \\Gamma \\vdash \\theta : \\Delta}\n57: {\\Gamma \\vdash \\,?m[\\theta]}\n58: %% \\quad\n59: %% \\inference[\\Elim{?m}]\n60: %% {\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n61: %% {\\Gamma \\vdash f x : \\tau}\n62: \\]\n63: \n64: % replace sigma with sigma' in func app, and then add convertibility constraint\n65: \\caption*{Typing Rules}\n66: \\label{fig:term-mvar-stlc-typing}\n67: \\end{figure*}\n68: \n69: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n70: \n71: In \\Elim{$\\to$}, we enforce a constraint that $\\sigma = \\sigma'$.\n72: \n73: We also have a convertibilty relation $\\leadsto$ on types. For a type system as simple as ours, this is just Eq.\n74: \n75: \\subsection{Context Morphism/Renamings}\n76: The context morphism judgement $\\Gamma \\vdash \\theta : \\Delta$ describes a simultaneous substitution from $\\Delta$ to $\\Gamma$; it is read as ``given a context $\\Delta$, there is a way to map its variables to those in $\\Gamma$''. More formally, it is defined as $\\forall (x : B) \\in \\Delta. \\Gamma \\vdash \\theta (x : B)$.\n77: \n78: These can be viewed as morphisms in the free product extension over $\\mathbb{S}$; the category of contexts over the category of sorts $\\mathbb{S}$. They are also called ``renamings''.\n79: \n80: \\subsubsection{Thinnings}\n81: A thinning is an order preserving injective map between contexts. Essentially, they assert that the second context is a sublist of the first.\n82: \n83: For example, let $\\Gamma = x : \\mathrm{Bool}, y : \\mathrm{Bool}$, and $\\Delta = w : \\mathrm{Bool}$. Also let $\\theta(x) \\mapsto w; \\theta(y) \\mapsto w$. Then, $\\theta$ is a thinning from $\\Gamma$ to $\\Delta$.\n84: \n85: \\subsubsection{Weakenings}\n86: A weakening of a context $\\Gamma$ extends $\\Gamma$ with one extra element. For example, we may take the context $\\Gamma = x : \\mathrm{Bool}, y : \\mathrm{Bool}$, and extend it with $z : \\mathrm{Bool} \\to \\mathrm{Bool}$, producing $\\Gamma' = x : \\mathrm{Bool}, y : \\mathrm{Bool}, z : \\mathrm{Bool} \\to \\mathrm{Bool}$.\n87: \n88: \n89: \\subsection{Capture Avoiding Substitution}\n90: Capture avoiding substition takes a term in $\\Gamma$, and a substitution from variables in $\\Gamma$ to terms in $\\Delta$. It then applies the substitution to the variables in the term. Importantly, it's capture avoiding. In our case, this corresponds to the usual definition of CAS, but when changing your calculus, make sure to extend this to other binders outside of lambda.\n91: \n92: \\subsection{Meta Substitution}\n93: Meta substitution is a form of monadic bind.\n94: It takes a metavariable $m$ , consisting of a hole $H$ in $\\Gamma$, and a renaming $\\theta$ from $\\Gamma$ to $\\Delta$ (i.e. an environment for $\\Gamma$ in context $\\Delta$ with holes in $H$), and a renaming $f$ from terms in $\\Gamma$ over $H$ to terms in $\\Gamma$ extended by $\\Delta$ over $S$. It produces a term in $\\Delta$ over $S$ as follows:\n95: \\begin{itemize}\n96: \\item Perform meta substitution on $\\theta$ to get a renaming $\\theta'$ with holes in $S$ instead of $H$.\n97: \\item Take the identity renaming in $\\Gamma$, and extend it with $\\theta'$ to get a renaming $\\theta''$ that maps $\\Gamma ++ \\Delta$ to $\\Delta$, with holes in $S$.\n98: \\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma ++ \\Delta$ with holes in $S$.\n99: \\item Perform capture-avoiding substitution on $t$ with the renaming $\\theta''$.\n100: \\end{itemize}\n101: \n102: \\[\n103: t >>= (m \\in H_A\\Gamma \\mapsto \\Gamma, \\Delta \\vdash M : A)\n104: \\]\n105: \n```\n\n`sections/dependent/singletons.tex` (head and lines matching the log, line-numbered):\n```\n1: \\section{Dependent Types via Singletons}\n2: When moving from STLC to dependent types, our judgements themselves become more complicated.\n3: To keep things simple, we'll only consider the simplest possible dependent type: the singleton.\n4: In order to make the calculus non-trivial, we'll include the booleans as a base type.\n5: \n6: \\subsection{Presyntax}\n7: Our calculus is defined over precontexts $\\Gamma$, pretypes $A$, and preterms $s, t, r$.\n8: \n9: \\begin{bnf}\n10: $\\Gamma$ ::=\n11: | $\\cdot$ : Empty context\n12: | $\\Gamma, x \\colon S$ : Variable weakening\n13: | $\\Gamma, (x \\colon A) \\equiv t$ : Definition weakening\n14: ;;\n15: $A$ ::=\n16: | $\\Bool$ : Booleans\n17: | $\\Singleton[A][t]$ : The singleton of $t \\,\\colon A$\n18: ;;\n19: $s, t, r$ ::=\n20: | $\\true$ : Boolean value constructors\n21: | $\\false$\n22: | $\\ite{s}{t}{r}$ : Boolean eliminator\n23: | $\\val[A][t]$ : Value constructor for $\\Singleton[A][t]$\n24: \\end{bnf}\n25: \n26: \n27: \\subsection{Judgements}\n28: \\subsubsection{Contexts}\n29: Our contexts are snoclists of either variables (with associated types), or definitions (a variable paired with a term).\n30: We have a judgement to declare that $\\Gamma$ is a valid context:\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Prelude\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \\usepackage{todonotes}\n17: \\usepackage{float} % force positioning\n18: \n19: % Bibliography\n20: \\usepackage[\n21: style=alphabetic,\n22: sorting=ynt\n23: ]{biblatex}\n24: \\addbibresource{refs.bib}\n25: \n26: % Relevant packages\n27: \\usepackage{simplebnf}\n28: \\usepackage{semantic}\n29: \n30: % General newcommands\n31: \\newcommand{\\jtodo}[1]{\\todo[inline,color=blue!40]{JW: TODO: #1}}\n32: \\newcommand{\\jq}[1]{\\todo[inline,color=blue!40]{JW: #1}}\n33: \n34: % Typeface defs\n35: \\newcommand\\jg\\textbf\n36: \\newcommand\\ty\\textrm\n37: \\newcommand\\tm\\textsf\n38: \n39: % Inference rule definitions\n40: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n41: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n42: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n43: \n44: % Judgement definitions\n45: \\newcommand{\\ctx}[1]{#1 \\jg{ ctx}}\n46: \\newcommand{\\type}[1]{#1 \\jg{ type}}\n47: \n48: % Relation definitions\n49: \\newcommand{\\twin}[2]{#1 \\frown #2}\n50: \n51: % Type definitions\n52: \\newcommand{\\Base}[0]{\\ty{Base}}\n53: \\newcommand{\\Type}[0]{\\ty{Type}}\n54: \n55: \\NewDocumentCommand{\\Singleton}{o o}{\\ty{Singleton}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n56: \\NewDocumentCommand{\\val}{o o}{\\textrm{val}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n57: \\newcommand{\\letval}[3]{\\tm{let val } #1 = #2 \\tm{ in } #3}\n58: \n59: \\newcommand{\\Bool}[0]{\\ty{Bool}}\n60: \\newcommand{\\true}[0]{\\tm{true}}\n61: \\newcommand{\\false}[0]{\\tm{false}}\n62: \\newcommand{\\ite}[3]{\\tm{if } #1 \\tm{ then } #2 \\tm{ else } #3}\n63: \n64: \n65: % Content\n66: \\begin{document}\n67: \\tableofcontents\n68: %\\todotoc\\listoftodos\n69: \\chapter{STLC}\n70: \n71: \\include{sections/stlc/base}\n72: \\newpage\\include{sections/stlc/type-level-metavars}\n73: \\newpage\\include{sections/stlc/term-level-metavars}\n74: \n75: \\chapter{Dependent Types}\n76: \\include{sections/dependent/singletons}\n77: \n78: \\printbibliography\n79: \n80: \\end{document}\n81: \n```\n\nCompile log (tail):\n```\npe1/public/amsfonts/cm/cmbx10.pfb\n>\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (11 pages, 189977 bytes).\nPDF statistics:\n 203 PDF objects out of 1000 (max. 8388607)\n 156 compressed objects within 2 object streams\n 62 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\tag{$\\Bool$-$\\beta$_2}\n=======\n \\tag{$\\Bool$-$\\beta_{\\false}2$}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\tag{$\\Bool$-$\\beta$_1}\n=======\n \\tag{$\\Bool$-$\\beta_{\\true}$}\n>>>>>>> REPLACE\n", "id": "github2_jacobjwalters__calculi__94a2ab4", "doc": "github_multi2/jacobjwalters__calculi__94a2ab4", "mutation": "real", "source": "github", "repo": "jacobjwalters/calculi", "sha": "94a2ab4d7504f6c613ca1a0631e80697e5c1ba89", "parent_sha": "604d5af2c1e7c56d7c425b10c3df7dfa6f87e373", "license": "MIT", "url": "https://github.com/jacobjwalters/calculi/commit/94a2ab4d7504f6c613ca1a0631e80697e5c1ba89", "changed_files": ["sections/dependent/singletons.tex"], "original_root": "main.tex", "n_files": 6, "engine": "pdflatex", "error_category": "Missing $ inserted.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 239: Missing $ inserted.\n- line 244: Missing $ inserted.\n\nProject files:\n- main.tex\n- refs.bib\n- sections/dependent/singletons.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Prelude\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \\usepackage{todonotes}\n17: \\usepackage{float} % force positioning\n18: \n19: % Bibliography\n20: \\usepackage[\n21: style=alphabetic,\n22: sorting=ynt\n23: ]{biblatex}\n24: \\addbibresource{refs.bib}\n25: \n26: % Relevant packages\n27: \\usepackage{simplebnf}\n28: \\usepackage{semantic}\n29: \n30: % General newcommands\n31: \\newcommand{\\jtodo}[1]{\\todo[inline,color=blue!40]{JW: TODO: #1}}\n32: \\newcommand{\\jq}[1]{\\todo[inline,color=blue!40]{JW: #1}}\n33: \n34: % Typeface defs\n35: \\newcommand\\jg\\textbf\n36: \\newcommand\\ty\\textrm\n37: \\newcommand\\tm\\textsf\n38: \n39: % Inference rule definitions\n40: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n41: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n42: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n43: \n44: % Judgement definitions\n45: \\newcommand{\\ctx}[1]{#1 \\jg{ ctx}}\n46: \\newcommand{\\type}[1]{#1 \\jg{ type}}\n47: \n48: % Relation definitions\n49: \\newcommand{\\twin}[2]{#1 \\frown #2}\n50: \n51: % Type definitions\n52: \\newcommand{\\Base}[0]{\\ty{Base}}\n53: \\newcommand{\\Type}[0]{\\ty{Type}}\n54: \n55: \\NewDocumentCommand{\\Singleton}{o o}{\\ty{Singleton}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n56: \\NewDocumentCommand{\\val}{o o}{\\textrm{val}\\IfValueT{#1}{_{#1}}\\IfValueT{#2}{\\,#2}}\n57: \\newcommand{\\letval}[3]{\\tm{let val } #1 = #2 \\tm{ in } #3}\n58: \n59: \\newcommand{\\Bool}[0]{\\ty{Bool}}\n60: \\newcommand{\\true}[0]{\\tm{true}}\n61: \\newcommand{\\false}[0]{\\tm{false}}\n62: \\newcommand{\\ite}[3]{\\tm{if } #1 \\tm{ then } #2 \\tm{ else } #3}\n63: \n64: \n65: % Content\n66: \\begin{document}\n67: \\tableofcontents\n68: %\\todotoc\\listoftodos\n69: \\chapter{STLC}\n70: \n71: \\include{sections/stlc/base}\n72: \\newpage\\include{sections/stlc/type-level-metavars}\n73: \\newpage\\include{sections/stlc/term-level-metavars}\n74: \n75: \\chapter{Dependent Types}\n76: \\include{sections/dependent/singletons}\n77: \n78: \\printbibliography\n79: \n80: \\end{document}\n81: \n```\n\nCompile log (tail):\n```\npe1/public/amsfonts/cm/cmbx10.pfb\n>\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (11 pages, 189977 bytes).\nPDF statistics:\n 203 PDF objects out of 1000 (max. 8388607)\n 156 compressed objects within 2 object streams\n 62 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/jacobjwalters/calculi"} {"bib": false, "lane": "project", "file_edits": [{"file": "sections/stlc/term-level-metavars.tex", "search": " {m \\in H_A\\Delta \\quad \\Gamma \\vdash \\theta : \\Delta}", "replace": " {m \\in $H_A\\Delta$ \\quad \\Gamma \\vdash \\theta : \\Delta}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["sections/stlc/term-level-metavars.tex"], "single_shot_visible": true, "error_lines": [{"line": 56, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "00000\n 637090 words of font info for 75 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,8n,96p,458b,927s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (6 pages, 141741 bytes).\nPDF statistics:\n 127 PDF objects out of 1000 (max. 8388607)\n 92 compressed objects within 1 object stream\n 30 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 56: Missing $ inserted.\n\nProject files:\n- main.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nOther project files (edit them with ):\n\n`sections/stlc/base.tex` (full file, line-numbered):\n```\n1: \\section{Base STLC}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: \\end{bnf}\n19: \n20: \\subsection{Typing Rules}\n21: \\begin{figure*}[h]\n22: \\[\n23: \\inference[Base]{}\n24: {\\vdash \\Base : \\Type}\n25: \\quad\n26: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n27: {\\vdash \\tau \\to \\sigma : \\Type}\n28: \\]\n29: \n30: \\caption*{Kinding Rules}\n31: \\label{fig:base-stlc-kinding}\n32: \\end{figure*}\n33: \n34: \\begin{figure*}[h]\n35: \\[\n36: \\inference[Var]{x : \\tau \\in \\Gamma}\n37: {\\Gamma \\vdash x : \\tau}\n38: \\quad\n39: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n40: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n41: \\]\n42: \\[\n43: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma}\n44: {\\Gamma \\vdash f x : \\tau}\n45: \\]\n46: \n47: \\caption*{Typing Rules}\n48: \\label{fig:base-stlc-typing}\n49: \\end{figure*}\n50: \n51: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n52: \n```\n\n`sections/stlc/type-level-metavars.tex` (full file, line-numbered):\n```\n1: \\section{STLC with Type-Level Meta-Variables}\n2: \\subsection{Syntax}\n3: \\begin{bnf}\n4: $t$ : \\textsf{Term} ::=\n5: | $x$ : Variables\n6: | $t$ $s$ : Function Application\n7: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n8: \\end{bnf}\n9: \n10: \\hfill\\break\n11: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n12: \n13: \\noindent\n14: \\begin{bnf}\n15: $\\tau$ : \\textsf{Type} ::=\n16: | $\\Base$ : Base type\n17: | $\\tau \\to \\sigma$ : Function type\n18: | $?m$ : Meta-Variable\n19: \\end{bnf}\n20: \n21: \\hfill\\break\n22: $m \\in M$ is a (fixed) set of meta-variables.\n23: \n24: \\subsection{Typing Rules}\n25: \\begin{figure*}[h]\n26: \\[\n27: \\inference[Base]{}\n28: {\\vdash \\Base : \\Type}\n29: \\quad\n30: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n31: {\\vdash \\tau \\to \\sigma : \\Type}\n32: \\]\n33: \\[\n34: \\inference[M-Var]{m \\in M}\n35: {\\vdash ?m : \\Type}\n36: \\]\n37: \n38: \\caption*{Kinding Rules}\n39: \\label{fig:type-mvar-stlc-kinding}\n40: \\end{figure*}\n41: \n42: \\begin{figure*}[h]\n43: \\[\n44: \\inference[]{}\n45: {\\Conv{\\Base}{\\Base}}\n46: \\quad\n47: \\inference[]{\\Conv{\\tau}{\\tau'} & \\Conv{\\sigma}{\\sigma'}}\n48: {\\Conv{\\tau \\to \\sigma}{\\tau' \\to \\sigma'}}\n49: \\]\n50: \\[\n51: \\inference[]{}\n52: {\\Conv{?m}{\\Base}}\n53: \\quad\n54: \\inference[]{}\n55: {\\Conv{?m}{\\tau \\to \\sigma}}\n56: \\]\n57: \n58: \\caption*{Convertibility Relation $\\Conv{}{}$ on Types}\n59: \\label{fig:type-mvar-stlc-conv}\n60: \\end{figure*}\n61: \n62: Convertibility is subject to constraints. As an example, if we have the constraint that $?m = \\Base$, then we cannot apply the $\\Conv{?m}{\\tau \\to \\sigma}$ rule.\n63: \n64: \\begin{figure*}[h]\n65: \\[\n66: \\inference[Var]{x : \\tau \\in \\Gamma}\n67: {\\Gamma \\vdash x : \\tau}\n68: \\quad\n69: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n70: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n71: \\]\n72: \\[\n73: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n74: {\\Gamma \\vdash f x : \\tau}\n75: \\]\n76: \n77: % replace sigma with sigma' in func app, and then add convertibility constraint\n78: \\caption*{Typing Rules}\n79: \\label{fig:type-mvar-stlc-typing}\n80: \\end{figure*}\n81: \n82: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n83: \n84: In \\Elim{$\\to$}, we enforce a constraint that $\\sigma = \\sigma'$.\n85: \n```\n\n`sections/stlc/term-level-metavars.tex` (full file, line-numbered):\n```\n1: \\section{STLC with Term-Level Meta-Variables}\n2: \n3: \\subsection{Syntax}\n4: \\begin{bnf}\n5: $t$ : \\textsf{Term} ::=\n6: | $x$ : Variables\n7: | $t$ $s$ : Function Application\n8: | $\\lambda x \\colon \\tau. t$ : Function Abstraction\n9: | $?m$ : Meta-variable $m \\in M$\n10: \\end{bnf}\n11: \n12: \\hfill\\break\n13: In $\\lambda x \\colon \\tau. t$, $x$ is a binding occurence, and $t$ is its scope.\n14: Assume a fixed set $M$ of meta-variables.\n15: \\hfill\\break\n16: \n17: \\noindent\n18: \\begin{bnf}\n19: $\\tau$ : \\textsf{Type} ::=\n20: | $\\Base$ : Base type\n21: | $\\tau \\to \\sigma$ : Function type\n22: \\end{bnf}\n23: \n24: \\hfill\\break\n25: \n26: \n27: \\subsection{Typing Rules}\n28: \\begin{figure*}[h]\n29: \\[\n30: \\inference[Base]{}\n31: {\\vdash \\Base : \\Type}\n32: \\quad\n33: \\inference[$\\to$]{\\vdash \\tau : \\Type & \\vdash \\sigma : \\Type}\n34: {\\vdash \\tau \\to \\sigma : \\Type}\n35: \\]\n36: \\caption*{Kinding Rules}\n37: \\label{fig:term-mvar-stlc-kinding}\n38: \\end{figure*}\n39: \n40: \n41: \\begin{figure*}[h]\n42: \\[\n43: \\inference[Var]{x : \\tau \\in \\Gamma}\n44: {\\Gamma \\vdash x : \\tau}\n45: \\]\n46: \\[\n47: \\inference[\\Intro{$\\to$}]{\\Gamma, x : \\tau \\vdash t : \\sigma}\n48: {\\Gamma \\vdash \\lambda x : \\tau. t : \\tau \\to \\sigma}\n49: \\quad\n50: \\inference[\\Elim{$\\to$}]{\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n51: {\\Gamma \\vdash f x : \\tau}\n52: \\]\n53: \n54: \\[\n55: \\inference[?m]\n56: {m \\in H_A\\Delta \\quad \\Gamma \\vdash \\theta : \\Delta}\n57: {\\Gamma \\vdash \\,?m[\\theta]}\n58: %% \\quad\n59: %% \\inference[\\Elim{?m}]\n60: %% {\\Gamma \\vdash f : \\sigma \\to \\tau & \\Gamma \\vdash x : \\sigma'}\n61: %% {\\Gamma \\vdash f x : \\tau}\n62: \\]\n63: \n64: % replace sigma with sigma' in func app, and then add convertibility constraint\n65: \\caption*{Typing Rules}\n66: \\label{fig:term-mvar-stlc-typing}\n67: \\end{figure*}\n68: \n69: Contexts $\\Gamma$ are (snoc)-lists of pairs of variable names $x$ and their corresponding types $\\tau$.\n70: \n71: In \\Elim{$\\to$}, we enforce a constraint that $\\sigma = \\sigma'$.\n72: \n73: We also have a convertibilty relation $\\leadsto$ on types. For a type system as simple as ours, this is just Eq.\n74: \n75: \\subsection{Context Morphism/Renamings}\n76: The context morphism judgement $\\Gamma \\vdash \\theta : \\Delta$ describes a simultaneous substitution from $\\Delta$ to $\\Gamma$; it is read as ``given a context $\\Delta$, there is a way to map its variables to those in $\\Gamma$''. More formally, it is defined as $\\forall (x : B) \\in \\Delta. \\Gamma \\vdash \\theta (x : B)$.\n77: \n78: These can be viewed as morphisms in the free product extension over $\\mathbb{S}$; the category of contexts over the category of sorts $\\mathbb{S}$. They are also called ``renamings''.\n79: \n80: \\subsubsection{Thinnings}\n81: A thinning is an order preserving injective map between contexts. Essentially, they assert that the second context is a sublist of the first.\n82: \n83: For example, let $\\Gamma = x : \\mathrm{Bool}, y : \\mathrm{Bool}$, and $\\Delta = w : \\mathrm{Bool}$. Also let $\\theta(x) \\mapsto w; \\theta(y) \\mapsto w$. Then, $\\theta$ is a thinning from $\\Gamma$ to $\\Delta$.\n84: \n85: \\subsubsection{Weakenings}\n86: A weakening of a context $\\Gamma$ extends $\\Gamma$ with one extra element. For example, we may take the context $\\Gamma = x : \\mathrm{Bool}, y : \\mathrm{Bool}$, and extend it with $z : \\mathrm{Bool} \\to \\mathrm{Bool}$, producing $\\Gamma' = x : \\mathrm{Bool}, y : \\mathrm{Bool}, z : \\mathrm{Bool} \\to \\mathrm{Bool}$.\n87: \n88: \n89: \\subsection{Capture Avoiding Substitution}\n90: Capture avoiding substition takes a term in $\\Gamma$, and a substitution from variables in $\\Gamma$ to terms in $\\Delta$. It then applies the substitution to the variables in the term. Importantly, it's capture avoiding. In our case, this corresponds to the usual definition of CAS, but when changing your calculus, make sure to extend this to other binders outside of lambda.\n91: \n92: \\subsection{Meta Substitution}\n93: Meta substitution is a form of monadic bind.\n94: It takes a metavariable $m$ , consisting of a hole $H$ in $\\Gamma$, and a renaming $\\theta$ from $\\Gamma$ to $\\Delta$ (i.e. an environment for $\\Gamma$ in context $\\Delta$ with holes in $H$), and a renaming $f$ from terms in $\\Gamma$ over $H$ to terms in $\\Gamma$ extended by $\\Delta$ over $S$. It produces a term in $\\Delta$ over $S$ as follows:\n95: \\begin{itemize}\n96: \\item Perform meta substitution on $\\theta$ to get a renaming $\\theta'$ with holes in $S$ instead of $H$.\n97: \\item Take the identity renaming in $\\Gamma$, and extend it with $\\theta'$ to get a renaming $\\theta''$ that maps $\\Gamma ++ \\Delta$ to $\\Delta$, with holes in $S$.\n98: \\item Look up $m$ in $f$ to produce $t$, a term in $\\Gamma ++ \\Delta$ with holes in $S$.\n99: \\item Perform capture-avoiding substitution on $t$ with the renaming $\\theta''$.\n100: \\end{itemize}\n101: \n102: \\[\n103: t >>= (m \\in H_A\\Gamma \\mapsto \\Gamma, \\Delta \\vdash M : A)\n104: \\]\n105: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Fonts and Symbols\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \n17: % Relevant packages\n18: \\usepackage{simplebnf}\n19: \\usepackage{semantic}\n20: \n21: % Local definitions\n22: \\newcommand{\\Base}[0]{\\mathsf{Base}}\n23: \\newcommand{\\Type}[0]{\\mathsf{Type}}\n24: \n25: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n26: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n27: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n28: \n29: % Content\n30: \\begin{document}\n31: \\tableofcontents\n32: \\chapter{STLC}\n33: \n34: \\include{sections/stlc/base}\n35: \\newpage\\include{sections/stlc/type-level-metavars}\n36: \\newpage\\include{sections/stlc/term-level-metavars}\n37: \\end{document}\n38: \n```\n\nCompile log (tail):\n```\n00000\n 637090 words of font info for 75 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,8n,96p,458b,927s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (6 pages, 141741 bytes).\nPDF statistics:\n 127 PDF objects out of 1000 (max. 8388607)\n 92 compressed objects within 1 object stream\n 30 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n {m \\in $H_A\\Delta$ \\quad \\Gamma \\vdash \\theta : \\Delta}\n=======\n {m \\in H_A\\Delta \\quad \\Gamma \\vdash \\theta : \\Delta}\n>>>>>>> REPLACE\n", "id": "github2_jacobjwalters__calculi__c3f03ec", "doc": "github_multi2/jacobjwalters__calculi__c3f03ec", "mutation": "real", "source": "github", "repo": "jacobjwalters/calculi", "sha": "c3f03ec1e8acb90c81e34ea40a36a748ced3a97d", "parent_sha": "bdc3ffa365aa6399754d305772224eee55701804", "license": "MIT", "url": "https://github.com/jacobjwalters/calculi/commit/c3f03ec1e8acb90c81e34ea40a36a748ced3a97d", "changed_files": ["sections/stlc/term-level-metavars.tex"], "original_root": "main.tex", "n_files": 4, "engine": "pdflatex", "error_category": "Missing $ inserted.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 56: Missing $ inserted.\n\nProject files:\n- main.tex\n- sections/stlc/base.tex\n- sections/stlc/term-level-metavars.tex\n- sections/stlc/type-level-metavars.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \n3: % LaTeX defaults work arounds\n4: \\usepackage{caption}\n5: \\usepackage{hyperref}\n6: \\hypersetup{\n7: colorlinks,\n8: citecolor=black,\n9: filecolor=black,\n10: linkcolor=black,\n11: urlcolor=black\n12: }\n13: \n14: % Fonts and Symbols\n15: \\usepackage{amsmath,amsfonts,amssymb}\n16: \n17: % Relevant packages\n18: \\usepackage{simplebnf}\n19: \\usepackage{semantic}\n20: \n21: % Local definitions\n22: \\newcommand{\\Base}[0]{\\mathsf{Base}}\n23: \\newcommand{\\Type}[0]{\\mathsf{Type}}\n24: \n25: \\newcommand{\\Intro}[1]{#1-\\textrm{I}}\n26: \\newcommand{\\Elim}[1]{#1-\\textrm{E}}\n27: \\newcommand{\\Conv}[2]{#1 \\leadsto #2}\n28: \n29: % Content\n30: \\begin{document}\n31: \\tableofcontents\n32: \\chapter{STLC}\n33: \n34: \\include{sections/stlc/base}\n35: \\newpage\\include{sections/stlc/type-level-metavars}\n36: \\newpage\\include{sections/stlc/term-level-metavars}\n37: \\end{document}\n38: \n```\n\nCompile log (tail):\n```\n00000\n 637090 words of font info for 75 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,8n,96p,458b,927s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb>\nOutput written on main.pdf (6 pages, 141741 bytes).\nPDF statistics:\n 127 PDF objects out of 1000 (max. 8388607)\n 92 compressed objects within 1 object stream\n 30 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/jacobjwalters/calculi"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " $\\Cov\\left(\\alpha\\,\\V{x} +\\beta\\,\\V{y} + \\gamma\\right) = \\alpha^2\\,\\Cov\\left(\\V{x}\\right) +\\beta^2\\,\\Cov\\left(\\V{y} \\right)$ & Uncorrelation\\\\", "replace": " $\\Cov\\left(\\alpha\\,\\V{x} +\\beta\\,\\V{y} + \\gamma\\right) = \\alpha^2\\,\\Cov\\left(\\V{x}\\right) +\\beta^2\\,\\Cov\\left(\\V{y} \\right)$ & Independence\\\\", "type": "real"}, {"file": "main.tex", "search": " $ \\Pr(X\\Given Y) = \\frac{\\Pr(Y\\Given X)\\,\\Pr(X) }{\\Pr(Y) }$& Bayes rule", "replace": " $ \\Pr(X\\Given Y) = \\frac{\\Pr(Y\\Given X)\\,\\Pr(Y) }{\\Pr(Y) }$& Bayes rule", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 230, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}, {"line": 429, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 30326 strings out of 467099\n 595250 string characters out of 5408265\n 1281544 words of memory out of 5000000\n 58959 multiletter control sequences out of 15000+600000\n 685801 words of font info for 153 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,27n,137p,1001b,1144s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 159543 bytes).\nPDF statistics:\n 75 PDF objects out of 1000 (max. 8388607)\n 46 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 57387 words of extra memory for PDF output out of 61914 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 230: Missing $ inserted.\n- line 429: Missing $ inserted.\n\nProject files:\n- .travis.yml\n- LICENSE\n- README.md\n- cookbook.cls\n- main.tex\n- preamble.tex\n\nOther project files (edit them with ):\n\n`cookbook.cls` (head and lines matching the log, line-numbered):\n```\n...\n21: \n22: \n23: \\NeedsTeXFormat{LaTeX2e}\n24: \n25: \n26: \\ProvidesClass{cookbook}\n27: \n28: \n29: \\DeclareOption{english}{\\def\\cookbook@lang{english}}\n30: \\DeclareOption{french}\n31: {\n32: \\def\\cookbook@lang{french}\n33: \\pretolerance = 2000\n34: \\tolerance = 6000\n35: \\hbadness = 6000\n36: }\n37: \n38: \n39: \\DeclareOption{portrait}\n40: {\n41: \\PassOptionsToPackage{orientation = portrait}{beamerposter}\n42: \\def\\cookbook@orientation{}\n43: }\n44: \\DeclareOption{landscape}\n45: {\n46: \\PassOptionsToPackage{orientation = landscape}{beamerposter}\n47: \\def\\cookbook@orientation{landscape}\n48: }\n49: \n50: \n```\n\n`preamble.tex` (head and lines matching the log, line-numbered):\n```\n...\n19: \n20: \\usepackage{amsmath,amsfonts,amssymb,textcomp,mathtools}\n21: \\usepackage{mathrsfs}\n22: \\usepackage{xspace} \n23: \n24: \n25: \\makeatletter \\newcommand{\\MathFuncName}[1]{{\\operator@font #1}}\n26: \\newcommand{\\MathFunc}[1]{\\mathop{\\operator@font #1}\\nolimits}\n27: \\newcommand{\\MathFuncWithLimits}[1]{\\mathop{\\operator@font #1}\\limits}\n28: \\makeatother\n29: \n30: \\newcommand{\\asterisk}{*}\n31: \\newcommand{\\mathd}{\\mathrm{d}} % roman 'd' for integrand/differential\n32: \\newcommand{\\mathe}{\\mathrm{e}} % roman 'e' for exp(1)\n33: \\newcommand{\\mathi}{\\mathrm{i}} % roman 'i' for sqrt(-1)\n34: \n35: \\newcommand{\\BF}[1]{\\mathbf{#1}} % math bold\n36: \\newcommand{\\RM}[1]{\\mathrm{#1}} % math roman\n37: \\newcommand{\\SF}[1]{\\mathsf{#1}} % math sans-serif\n38: \\newcommand{\\OP}[1]{{\\MathFuncName{#1}}} % upright (*) for function names\n39: \\newcommand{\\Tag}[1]{\\mathsf{#1}} % math font for labels and tags\n40: \\newcommand{\\BS}[1]{{\\boldsymbol{#1}}} % bold symbol (*)\n41: \\newcommand{\\V}[1]{\\boldsymbol{#1}} % vector\n42: \\newcommand{\\M}[1]{\\mathbf{#1}} % matrix\n43: \\newcommand{\\Inner}[2]{\\left \\langle #1,#2 \\right\\rangle} % Inner product\n...\n48: \\newcommand{\\AdjointLetter}{\\dagger}\n49: \\newcommand{\\T}{^{\\AdjointLetter}} % suffix for transpose\n50: \\newcommand{\\TransposeLetter}{\\top}\n51: \\newcommand{\\Tt}{^{\\TransposeLetter}} % suffix for transpose\n52: \\newcommand{\\mT}{^{-\\TransposeLetter}} % suffix for inverse transpose\n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Inverse Problem Cookbook \n2: % Freely inspired from https://www.charles-deledalle.fr/pages/files/cookbook_datascience.pdf\n3: % Copyright (C) Ferréol Soulez, 2020 \n4: % ferreol.soulez@univ-lyon1.fr\n5: %\n6: % This program is free software: you can redistribute it and/or modify\n7: % it under the terms of the GNU General Public License as published by\n8: % the Free Software Foundation, either version 3 of the License, or\n9: % (at your option) any later version.\n10: %\n11: % This program is distributed in the hope that it will be useful,\n12: % but WITHOUT ANY WARRANTY; without even the implied warranty of\n13: % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n14: % GNU General Public License for more details.\n15: %\n16: % You should have received a copy of the GNU General Public License\n17: % along with this program. If not, see .\n18: %\n19: %% Ferréol Soulez, 2020\n20: \n21: \\documentclass[a4paper]{cookbook}\n22: \\input{preamble.tex}\n23: \\usepackage{lipsum} % Dummy text\n24: \\usepackage[figwidth = 0.98\\linewidth]{todonotes} % Dummy image (and more!)\n25: \\usepackage[absolute, overlay]{textpos} % Figure placement\n26: \\setlength{\\TPHorizModule}{\\paperwidth}\n27: \\setlength{\\TPVertModule}{\\paperheight}\n28: \n29: \\usepackage{tabls}\n30: \n31: \\title{Selected recipes for inverse problems}\n32: \\author\n33: {%\n34: Ferréol Soulez\n35: }\n36: %\\institute{Centre de Recherche Astrophysique de Lyon}\n37: \n38: \n39: %% Remove footline:\n40: %\\setbeamertemplate{footline}{}\n41: \n42: \n43: \\begin{document}\n44: \\begin{frame}\n45: \n46: \\vspace{-1.5em} \n47: \\begin{columns}[onlytextwidth]\n48: \n49: \n50: \\begin{column}{0.5\\textwidth - .5cm}\n51: \\begin{exampleblock}{Notations}\n52: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n53: $\\alpha$ & (lower case) scalar \\\\\n54: $\\alpha^*$ & complex conjugate of $\\alpha$\\\\\n55: $\\V{x} \\in \\Complexes^N$ & (boldface lower case) complex vector\\\\\n56: $N$ & (upper case) cardinal (number of elements)\\\\\n57: $\\M{H} \\in \\Complexes^{N\\times M}$ & (boldface upper case) linear operator (matrix) \\\\% $\\Complexes^N \\to \\Complexes^M$\\\\\n58: $f: \\Complexes^N \\to \\Complexes^M $ & (lower case) function \\\\\n59: $ L^{2}(\\Reals^N)$ & space of squared-integrable function \\\\\n60: $\\mathcal{H}: L^{2}(\\Reals^N) \\to L^{2}(\\Reals^M)$ & (calligraphic upper case) operator \\\\ & acting on functions\n61: \\end{tabular*}\n62: \\end{exampleblock}\n63: \n64: \\begin{block}{Basic properties}\n65: {\\tablinesep=1.2ex\n66: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n67: $\\left[\\M{H}\\,\\V{x}\\right]_m = \\sum_n H_{m,n}\\,x_n$ & vector matrix product\\\\\n68: $\\left[\\M{H}\\,\\M{G}\\right]_{m,k} = \\sum_{n} H_{m,n}\\,G_{n,k}$ & matrix product\\\\\n69: $\\M{H}\\left(\\alpha\\,\\V{x}+\\beta\\,\\V{y}\\right) = \\alpha\\,\\M{H}\\,\\V{x}+\\beta\\,\\M{H}\\,\\V{y}$ & linearity\\\\ \n70: $\\left({\\V{x}}\\times {\\V{y}}\\right)_n = x_n\\,y_n$ & element wise product \\\\\n71: $\\M{I} = \n72: \\begin{bmatrix}\n73: 1\\ & 0\\ & 0\\ &\\dots &0\\\\\n74: 0&1&0&\\dots &0\\\\\n75: 0&0&1&\\dots &0\\\\\n76: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n77: 0&0&0&\\dots &1\\end{bmatrix}$ & identity matrix\\\\\n78: \\end{tabular*}}\n79: {\\tablinesep=1.2ex\n80: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n81: $\\M{A} = \\diag(\\V{a}) = \n82: \\begin{bmatrix}\n83: a_0&0&0&\\dots &0\\\\\n84: 0&a_1&0&\\dots &0\\\\\n85: 0&0&a_2&\\dots &0\\\\\n86: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n87: 0&0&0&\\dots &a_{N-1}\\end{bmatrix}$ & diagonal matrix % $\\V{a}= \\begin{bmatrix} a_0\\\\ a_1\\\\ a_2\\\\ \\vdots \\\\ a_{N-1} \\end{bmatrix}$ \n88: \\end{tabular*}}\n89: \\end{block}\n90: \n91: \n92: \\begin{block}{Adjoint, scalar product}\n93: {\\tablinesep=1.2ex\n94: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n95: $\\left(H\\T\\right)_{i,j} = H^*_{j,i} $ & adjoint (transpose conjugate)\\\\\n96: $\\Inner{\\V{x}}{\\V{y}} = \\sum_{n=0}^{N-1} x_n^*\\,y_n = \\V{x}\\T \\V{y}$ & dot (or scalar or inner) product\\\\\n97: $\\Inner{\\M{H}\\,\\V{x}}{\\V{y}} = \\Inner{\\V{x}}{\\M{H}\\T\\,\\V{y}}$ & adjoint formal definition\\\\\n98: $\\left(\\alpha\\,\\M{H} + \\beta\\,\\M{G}\\right)\\T = \\alpha^*\\,\\M{H}\\T + \\beta^*\\,\\M{G}\\T$&\\\\\n99: $\\left(\\M{H}\\,\\M{G}\\right)\\T = \\M{G}\\T\\,\\M{H}\\T$&\n100: \\end{tabular*}}\n101: \\end{block}\n102: \n103: \\begin{block}{Norms}\n104: {\\tablinesep=1.5ex\n105: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n106: $ \\Norm{\\V{x}}_2^2 = \\Inner{\\V{x}}{\\V{x}} = \\V{x}\\T\\V{x} = \\sum_{n=0}^{N-1} \\Abs{x_n}^2 = \\sum_{n=0}^{N-1} x_n^*\\,x_n$ & $\\ell^2$ norm\n107: \\end{tabular*}}\n108: {\\tablinesep=1.2ex\n109: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n110: $ \\Abs{ \\Inner{\\V{x}}{\\V{y}}} \\leq \\Norm{\\V{x}}_2 \\, \\Norm{\\V{y}}_2 $ & (Cauchy-Schwartz) \\\\\n111: $\\Norm{\\V{x} + \\V{y} }^2_2 = \\Norm{\\V{x}}^2_2 + \\Norm{\\V{y}}^2_2 + 2\\, \\Inner{\\V{x}}{\\V{y}} $ & \\\\\n112: $ \\Norm{\\V{x}}_p^p =\\sum_{n=0}^{N-1} \\Abs{x_n}^p\\ , \\,p\\geq 1 $ & $\\ell^p$ norm\\\\\n113: $ \\Norm{\\V{x} + \\V{y} }_p \\leq \\Norm{\\V{x}}_p + \\Norm{\\V{y}}_p$ & triangular inequality\\\\\n114: $\\Norm{\\M{H}}^2_F = \\sum_{n,m} \\Abs{H_{i,j}}^2 = \\tr(\\M{H}\\T\\M{H}) $& Frobenius norm \n115: \\end{tabular*}}\n116: \\end{block}\n117: \n118: \\begin{block}{Inverse}\n119: $\\M{H}\\in \\Complexes^{N\\times N}$ is called invertible (also nonsingular or nondegenerate) if there exists a matrix $\\M{G}$ such that:\n120: \\begin{align*}\n121: \\M{H} \\M{G} = \\M{G} \\M{H} = \\M{I}\n122: \\end{align*}\n123: $\\M{G} = \\M{H}^{-1}$ is unique and is the inverse of $\\M{H}$\\\\\n124: {\\tablinesep=1.1ex\n125: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n126: $\\left(\\M{H}\\,\\M{M}\\right)^{-1} = \\M{M}^{-1}\\,\\M{H}^{-1}$& for any $\\M{H}\\,,\\M{M}$ invertible\\\\\n127: $\\left(\\M{H}\\T\\right)^{-1} = \\left(\\M{H}^{-1}\\right)\\T$& \n128: \\end{tabular*}}\n129: \\end{block}\n130: \n131: \n132: \n133: \\end{column}\n134: \n135: \n136: \\begin{column}{0.5\\textwidth - .5cm}\n137: \n138: \n139: \\begin{block}{Eigenvalue \\& eigenvectors of $\\M{H} \\in \\Complexes^{N\\times N}$}\n140: $\\lambda_i\\in \\Complexes$ and $\\V{v}_i\\in \\Complexes^{N}$ are the $i^\\text{th}$ eigenvalue and eigenvector respectively. They satisfy:\n141: \\begin{align*}\n142: \\M{H}\\,\\V{v}_i = \\lambda_i\\,\\V{v}_i\n143: \\end{align*}\n144: It leads to the eigendecomposition:\n145: \\begin{align*}\n146: \\M{H} = \\M{Q}\\,\\diag(\\V{\\lambda})\\,\\M{Q}^{-1}\\,,\n147: \\end{align*}\n148: where the columns of $\\M{V}$ are the $N$ eigenvectors of $\\M{H}$.\n149: \\begin{itemize}\n150: \\item $\\V{\\lambda} = \\eig(\\M{H})$ is the spectrum of $\\M{H}$,\n151: \\item $C = \\frac{\\max\\Abs{\\V{\\lambda}}}{\\min\\Abs{\\V{\\lambda}}}$ is the condition number,\n152: \\item $\\rank(\\M{H})$ is the number of non-zero element of $\\V{\\lambda}$,\n153: \\item if $\\lambda_i\\neq 0,\\,\\forall i$, $\\M{H} $ is invertible and $\\M{H}^{-1} = \\M{Q}\\,\\diag(\\V{\\lambda})^{-1}\\,\\M{Q}^{-1}\\,$,\n154: \\end{itemize}\n155: \\end{block}\n156: \n157: \n158: \\begin{block}{Peculiar matrices}\n159: \\begin{itemize}\n160: \\item {\\bf Unitary:} $\\M{Q}\\T\\, \\M{Q} = \\M{Q}\\, \\M{Q}\\T = \\M{I}$\n161: \\item {\\bf Hermitian:} $\\M{H}\\T= \\M{H}$ and $\\M{H} = \\M{Q}\\,\\diag(\\V{\\lambda})\\,\\M{Q}\\T$ with $\\V{\\lambda}\\in\\Reals^N$ and $\\M{Q}$ unitary\n162: \\item {\\bf Positive semi-definite:} $ \\lambda_i\\geq 0\\,,\\ \\forall i \\iff \\V{x}\\T\\M{H}\\V{x} \\geq 0, \\, \\forall \\V{x}$ \n163: \\item {\\bf Toeplitz:} $H_{i,j} = h_{i-j}$,\n164: \\item {\\bf Circulant:} Toeplitz with $H_{i,j}= h_{(i-j) \\mod N}$\n165: \\end{itemize}\n166: \\end{block}\n167: \n168: \\begin{block}{Trace and determinant} \n169: \\begin{itemize}\n170: \\item {\\bf trace:} $\\ \\tr(\\M{H}) = \\sum_n H_{n,n} = \\sum_n \\lambda_n $\n171: \\end{itemize}\n172: {\\tablinesep=1.1ex\n173: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n174: $\\tr(\\M{H}\\T) = \\tr(\\M{H})^*$& $\\tr(\\M{H}\\,\\M{G}) =\\tr(\\M{G}\\,\\M{H})$\\\\\n175: $\\tr(\\alpha\\,\\M{H}+\\beta\\,\\M{G}) =\\alpha\\,\\tr(\\M{H})+\\alpha\\,\\tr(\\M{H})$& \\\\\n176: \\end{tabular*}}\n177: \\begin{itemize}\n178: \\item {\\bf determinant:} $\\ \\det(\\M{H}) = \\prod_n \\lambda_n $\n179: \\end{itemize}\n180: {\\tablinesep=1.1ex\n181: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n182: $\\det(\\M{H}) \\neq 0 \\iff \\M{H} $ is invertible & $\\det(\\M{H}\\T) = \\det(\\M{H})^*$\\\\\n183: $\\det(\\M{H}\\,\\M{G}) =\\det(\\M{H})\\,\\det(\\M{G})$& $\\det(\\M{H}^{-1})= 1/ \\det(\\M{H})$\n184: \\end{tabular*}}\n185: \\end{block}\n186: \n187: \n188: \\begin{block}{Singular value decomposition}\n189: For all matrices $\\M{H}\\in \\Complexes^{N\\times M}$ there exists two unitary matrices $\\M{U} \\in \\Complexes^{N\\times N}$ and $\\M{V} \\in \\Complexes^{M\\times M}$ and a real non-negative diagonal matrix $\\M{\\Sigma} \\in \\Complexes^{N\\times M}$ (singular values: $\\sigma_i = \\Sigma_{i,i}\\,,\\ \\forall i\\leq \\min(M,N)$) subject to:\n190: \\begin{align*}\n191: \\M{H} = \\M{U}\\,\\M{\\Sigma}\\,\\M{V}\\T\n192: \\end{align*}\n193: \\vspace{-2em}\\begin{itemize}\n194: \\item columns of $\\M{U}$ are eigenvectors of $\\M{H}\\,\\M{H}\\T$, \n195: \\item columns of $\\M{V}$ are eigenvectors of $\\M{H}\\T\\,\\M{H}$, \n196: \\item $\\M{\\Sigma} = \\sqrt{\\diag\\left(\\eig\\left(\\M{H}\\,\\M{H}\\T\\right)\\right)} $,\n197: \\item $\\Norm{\\M{H}}^2_F = \\sum_{i} \\sigma_i^2 $\n198: \\item $\\rank(\\M{H})$: number of non zero singular values,\n199: % \\item if $\\M{H}$ is Hermitian $\\M{U} = \\M{V} = \\M{Q}$\n200: \\end{itemize}\n201: \\end{block}\n202: \n203: \\begin{block}{Inversion lemmas \\& Woodbury identity}\n204: $ \\M{B}^{-1}\\M{V} \\left(\\M{A} - \\M{U}\\M{B}^{-1}\\M{V}\\right)^{-1} = \\left( \\M{B} - \\M{V}\\M{A}^{-1}\\M{U}\\right)^{-1}\\M{V}\\M{A}^{-1}$\\\\\n205: $ \\left(\\M{A} - \\M{U}\\M{B}^{-1}\\M{V}\\right)^{-1}\\M{U}\\M{B}^{-1} = \\M{A}^{-1}\\M{U}\\left( \\M{B} - \\M{V}\\M{A}^{-1}\\M{U}\\right)^{-1}$\\\\\n206: $\\left(\\M{A} + \\M{U}\\,\\M{B}\\,\\M{V} \\right)^{-1} = \\M{A}^{-1} - \\M{A}^{-1}\\,\\M{U}\\left( \\M{B}^{-1} + \\M{V}\\,\\M{A}^{-1}\\,\\M{U}\\right)^{-1}\\,\\M{V}\\,\\M{A}^{-1}$\n207: \\end{block}\n208: \n209: \\begin{block}{Moore-Penrose pseudo inverse}\n210: The pseudo inverse of $\\M{H} = \\M{U}\\,\\M{\\Sigma}\\,\\M{V}\\T$ writes $\\M{H}^+ = \\M{V}\\,\\M{\\Sigma}^+\\,\\M{U}\\T$ with $\\Sigma_{i,i}^+ = \\left\\{\n211: \\begin{array}{ll}\n212: \\Sigma^{-1}_{i,i} & \\text{if }\\sigma_i\\neq0 \\,, \\\\\n213: 0 & \\text{otherwise} \\,.\n214: \\end{array}\n215: \\right.$ \n216: \n217: \\begin{itemize}\n218: \\item $\\M{H}\\,\\M{H}^+\\,\\M{H} = \\M{H} $ and $ \\M{H}^+\\,\\M{H}\\,\\M{H}^+ = \\M{H}^+ $\n219: \\item $\\M{H}$ is square and $\\ \\rank(\\M{H}) = N \\Rightarrow \\M{H}^+ = \\M{H}^{-1}$\n220: \\item $\\M{H}$ is broad: $\\ \\rank(\\M{H}) \\leq N$ and $ \\M{H}^+ = \\M{H}\\T \\left(\\M{H}\\,\\M{H}\\T\\right)^{-1}$\n221: \\item $\\M{H}$ is tall: $\\ \\rank(\\M{H}) \\leq M $ and $\\M{H}^+ = \\left(\\M{H}\\T\\,\\M{H}\\right)^{-1}\\,\\M{H}\\T $ \n222: \\end{itemize}\n223: \\end{block}\n224: \n225: \\end{column}\n226: \n227: \n228: \\end{columns}\n229: \n230: \\end{frame}\n231: \n232: \\begin{frame}\n233: \\vspace{-1.5em}\n234: \\begin{columns}[onlytextwidth]\n235: \\begin{column}{0.5\\textwidth - .5cm}\n236: \\begin{block}{Derivatives} \n237: {\\tablinesep=1.1ex\n238: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n239: $J_{i,j}=\\left[\\PDer{\\V{x}}{\\V{y}}\\right]_{i,j} = \\PDer{x_i}{y_j} $ & Jacobian matrix\\\\\n240: $\\left[\\nabla f \\right]_i= \\PDer{f}{x_i}$ & Gradient vector\\\\\n241: $\\left[\\nabla^2 f\\right]_{i,j} = \n242: \\frac{\\partial^2 f}{\\partial x_i\\,\\partial x_j }$ & Hessian matrix\n243: \\end{tabular*}}\n244: \\end{block}\n245: \\begin{block}{Derivation rules} \n246: {\\tablinesep=1.1ex\n247: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n248: % $\\partial \\M{A} = 0$ \\\\\n249: $\\partial\\left(\\alpha\\, \\M{A}+ \\beta \\,\\M{B}\\right) = \\alpha\\,\\partial\\M{A} +\\beta\\,\\partial\\M{B}$ & linearity \\\\\n250: $\\partial\\left( \\M{A}\\,\\M{B}\\right) =\\left( \\partial\\M{A}\\right) \\, \\M{B} + \\M{A}\\, \\left(\\partial\\M{B}\\right)$ & \\\\\n251: $\\partial\\left( \\M{A}^{-1}\\right) = -\\M{A}^{-1}\\left( \\partial\\M{A}\\right)\\,\\M{A}^{-1}$ & \\\\\n252: $\\partial\\left( \\M{A}\\T\\right) = \\left( \\partial\\M{A}\\right)\\T$ & \\\\\n253: $\\PDer{\\V{x}\\T\\V{y}}{\\V{x}} = \\PDer{\\V{y}\\T\\V{x}}{\\V{x}} = \\V{y} $&\\\\\n254: $\\PDer{\\V{x}\\T\\M{A}\\V{x}}{\\V{x}} = \\left(\\M{A} + \\M{A}\\T\\right) \\V{x} $& \\\\\n255: % $\\PDer{f\\comp g}{x} =\\left( \\PDer{f}{x}\\comp g \\right)\\, \\PDer{g}{\\V{x}}$ & chain rule\\\\\n256: % $\\PDer{f\\comp g(\\V{x})}{\\V{x}} = \\sum_m^M \\PDer{f}{\\left[g(\\V{x})\\right]_m}\\, \\PDer{\\left[g(\\V{x})\\right]_m}{\\V{x}}$ & chain rule\\\\\n257: $\\PDer{f\\comp g(\\V{x})}{\\V{x}} = \\At{\\sum_{m=0}^{M-1} \\PDer{f}{u_m}\\, \\PDer{u_m}{\\V{x}}}{\\V{u} = g(\\V{x})}$ & chain rule\\\\\n258: $\\PDer{\\left(\\M{A}\\,\\V{x}-\\V{y}\\right)\\T\\M{B}\\left(\\M{A}\\,\\V{x}-\\V{y}\\right)}{\\M{A}} = \\left(\\M{B} + \\M{B}\\T \\right)\\,\\left(\\M{A}\\,\\V{x}- \\V{y}\\right)\\,\\V{x}\\T$&\n259: \\end{tabular*}}\n260: \\end{block}\n261: \n262: \\begin{block}{Continuous Fourier transform}\n263: {\\tablinesep=1.2ex\n264: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n265: $\\FT{f}(\\omega) = \\F{f}(\\omega) = \\int_{-\\infty}^{+\\infty} f(t) \\E^{-\\TwoIPi\\,\\omega\\,t}\\,\\D{t}$& forward\\\\ \n266: $f(t) = \\IF{\\FT{f}}(t) = \\int_{-\\infty}^{+\\infty} f(\\omega) \\E^{\\TwoIPi\\,\\omega\\,t}\\,\\D{\\omega}$& inverse\n267: \\end{tabular*}}\n268: \n269: % {\\bf Properties}\n270: \n271: {\\tablinesep=1.3ex\n272: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n273: $\\F{\\alpha f + \\beta g} = \\alpha \\F{f} + \\beta \\F{g} $ & linearity\\\\ \n274: $\\F{f(t-t_0)} =\\E^{-\\TwoIPi\\,\\omega\\,t_0} \\F{f} $ & shift\\\\ \n275: $\\F{\\E^{\\TwoIPi\\,\\omega_0\\,t} f } = \\F{f}(\\omega-\\omega_0) $ & modulation\\\\ \n276: $\\F{f(a\\,t)} =\\frac{1}{\\Abs{a}} \\F{f}\\left(\\frac{\\omega}{a}\\right) $ & scaling\\\\\n277: $\\F{f^*}(\\omega) =\\F{f}^*(-\\omega) $ & conjugation\\\\\n278: $ \\int_{-\\infty}^{+\\infty} \\Abs{\\FT{f}(\\omega)}^2\\,\\D{\\omega} = \\int_{-\\infty}^{+\\infty} \\Abs{f(t)}^2\\,\\D{t} $ & Plancherel-Parseval\\\\\n279: $\\FT{f}(0) = \\int_{-\\infty}^{+\\infty} f(t)\\,\\D{t} $ & integration\\\\\n280: $\\F{f^{(n)}} = \\left(\\TwoIPi\\,\\omega\\right)^n\\,\\F{f}$ & differentiation\\\\\n281: $\\F{f\\ast g} =\\F{f}\\,\\F{g}$ & convolution\\\\\n282: $\\F{f\\star f} = \\Abs{\\F{f}}^2$ & autocorrelation\n283: \\end{tabular*}}\n284: \\end{block}\n285: \n286: \\begin{block}{Discrete Fourier Transform}\n287: {\\tablinesep=1.2ex\n288: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n289: $ \\M{F}=\\begin{bmatrix}\n290: 1&1&1&\\cdots &1\\\\\n291: 1&\\omega &\\omega^{2}&\\cdots &\\omega^{N-1}\\\\\n292: 1&\\omega^{2}&\\omega^{4}&\\cdots &\\omega^{2(N-1)}\\\\\n293: % 1&\\omega^{3}&\\omega^{6}&\\omega^{9}&\\cdots &\\omega^{3(N-1)}\\\\\n294: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n295: 1&\\omega^{N-1}&\\omega^{2(N-1)}&\\cdots &\\omega^{(N-1)(N-1)}\n296: \\end{bmatrix}$ & \n297: \\begin{tabular}{r} \n298: with $\\omega = \\E^{-\\frac{-2\\imath\\,\\pi }{N}}$ \\\\\n299: the $N^\\text{th}$ root of unity.\n300: \\end{tabular}\n301: \n```\n\nCompile log (tail):\n```\nrerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 30326 strings out of 467099\n 595250 string characters out of 5408265\n 1281544 words of memory out of 5000000\n 58959 multiletter control sequences out of 15000+600000\n 685801 words of font info for 153 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,27n,137p,1001b,1144s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 159543 bytes).\nPDF statistics:\n 75 PDF objects out of 1000 (max. 8388607)\n 46 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 57387 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n $ \\Pr(X\\Given Y) = \\frac{\\Pr(Y\\Given X)\\,\\Pr(Y) }{\\Pr(Y) }$& Bayes rule\n=======\n $ \\Pr(X\\Given Y) = \\frac{\\Pr(Y\\Given X)\\,\\Pr(X) }{\\Pr(Y) }$& Bayes rule\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n $\\Cov\\left(\\alpha\\,\\V{x} +\\beta\\,\\V{y} + \\gamma\\right) = \\alpha^2\\,\\Cov\\left(\\V{x}\\right) +\\beta^2\\,\\Cov\\left(\\V{y} \\right)$ & Independence\\\\\n=======\n $\\Cov\\left(\\alpha\\,\\V{x} +\\beta\\,\\V{y} + \\gamma\\right) = \\alpha^2\\,\\Cov\\left(\\V{x}\\right) +\\beta^2\\,\\Cov\\left(\\V{y} \\right)$ & Uncorrelation\\\\\n>>>>>>> REPLACE\n", "id": "github2_FerreolS__InverseProblemsCookbook__aaf22e3", "doc": "github_multi2/FerreolS__InverseProblemsCookbook__aaf22e3", "mutation": "real", "source": "github", "repo": "FerreolS/InverseProblemsCookbook", "sha": "aaf22e3cbeb5df227e30d6fd1eb7e39281be7802", "parent_sha": "3dd70d03d858f8bfc767e0c4f4973beb5495f7ef", "license": "GPL-3.0", "url": "https://github.com/FerreolS/InverseProblemsCookbook/commit/aaf22e3cbeb5df227e30d6fd1eb7e39281be7802", "changed_files": ["IPCookbook.tex"], "original_root": "IPCookbook.tex", "n_files": 3, "engine": "pdflatex", "error_category": "Missing $ inserted.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 230: Missing $ inserted.\n- line 429: Missing $ inserted.\n\nProject files:\n- .travis.yml\n- LICENSE\n- README.md\n- cookbook.cls\n- main.tex\n- preamble.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Inverse Problem Cookbook \n2: % Freely inspired from https://www.charles-deledalle.fr/pages/files/cookbook_datascience.pdf\n3: % Copyright (C) Ferréol Soulez, 2020 \n4: % ferreol.soulez@univ-lyon1.fr\n5: %\n6: % This program is free software: you can redistribute it and/or modify\n7: % it under the terms of the GNU General Public License as published by\n8: % the Free Software Foundation, either version 3 of the License, or\n9: % (at your option) any later version.\n10: %\n11: % This program is distributed in the hope that it will be useful,\n12: % but WITHOUT ANY WARRANTY; without even the implied warranty of\n13: % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n14: % GNU General Public License for more details.\n15: %\n16: % You should have received a copy of the GNU General Public License\n17: % along with this program. If not, see .\n18: %\n19: %% Ferréol Soulez, 2020\n20: \n21: \\documentclass[a4paper]{cookbook}\n22: \\input{preamble.tex}\n23: \\usepackage{lipsum} % Dummy text\n24: \\usepackage[figwidth = 0.98\\linewidth]{todonotes} % Dummy image (and more!)\n25: \\usepackage[absolute, overlay]{textpos} % Figure placement\n26: \\setlength{\\TPHorizModule}{\\paperwidth}\n27: \\setlength{\\TPVertModule}{\\paperheight}\n28: \n29: \\usepackage{tabls}\n30: \n31: \\title{Selected recipes for inverse problems}\n32: \\author\n33: {%\n34: Ferréol Soulez\n35: }\n36: %\\institute{Centre de Recherche Astrophysique de Lyon}\n37: \n38: \n39: %% Remove footline:\n40: %\\setbeamertemplate{footline}{}\n41: \n42: \n43: \\begin{document}\n44: \\begin{frame}\n45: \n46: \\vspace{-1.5em} \n47: \\begin{columns}[onlytextwidth]\n48: \n49: \n50: \\begin{column}{0.5\\textwidth - .5cm}\n51: \\begin{exampleblock}{Notations}\n52: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n53: $\\alpha$ & (lower case) scalar \\\\\n54: $\\alpha^*$ & complex conjugate of $\\alpha$\\\\\n55: $\\V{x} \\in \\Complexes^N$ & (boldface lower case) complex vector\\\\\n56: $N$ & (upper case) cardinal (number of elements)\\\\\n57: $\\M{H} \\in \\Complexes^{N\\times M}$ & (boldface upper case) linear operator (matrix) \\\\% $\\Complexes^N \\to \\Complexes^M$\\\\\n58: $f: \\Complexes^N \\to \\Complexes^M $ & (lower case) function \\\\\n59: $ L^{2}(\\Reals^N)$ & space of squared-integrable function \\\\\n60: $\\mathcal{H}: L^{2}(\\Reals^N) \\to L^{2}(\\Reals^M)$ & (calligraphic upper case) operator \\\\ & acting on functions\n61: \\end{tabular*}\n62: \\end{exampleblock}\n63: \n64: \\begin{block}{Basic properties}\n65: {\\tablinesep=1.2ex\n66: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n67: $\\left[\\M{H}\\,\\V{x}\\right]_m = \\sum_n H_{m,n}\\,x_n$ & vector matrix product\\\\\n68: $\\left[\\M{H}\\,\\M{G}\\right]_{m,k} = \\sum_{n} H_{m,n}\\,G_{n,k}$ & matrix product\\\\\n69: $\\M{H}\\left(\\alpha\\,\\V{x}+\\beta\\,\\V{y}\\right) = \\alpha\\,\\M{H}\\,\\V{x}+\\beta\\,\\M{H}\\,\\V{y}$ & linearity\\\\ \n70: $\\left({\\V{x}}\\times {\\V{y}}\\right)_n = x_n\\,y_n$ & element wise product \\\\\n71: $\\M{I} = \n72: \\begin{bmatrix}\n73: 1\\ & 0\\ & 0\\ &\\dots &0\\\\\n74: 0&1&0&\\dots &0\\\\\n75: 0&0&1&\\dots &0\\\\\n76: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n77: 0&0&0&\\dots &1\\end{bmatrix}$ & identity matrix\\\\\n78: \\end{tabular*}}\n79: {\\tablinesep=1.2ex\n80: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n81: $\\M{A} = \\diag(\\V{a}) = \n82: \\begin{bmatrix}\n83: a_0&0&0&\\dots &0\\\\\n84: 0&a_1&0&\\dots &0\\\\\n85: 0&0&a_2&\\dots &0\\\\\n86: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n87: 0&0&0&\\dots &a_{N-1}\\end{bmatrix}$ & diagonal matrix % $\\V{a}= \\begin{bmatrix} a_0\\\\ a_1\\\\ a_2\\\\ \\vdots \\\\ a_{N-1} \\end{bmatrix}$ \n88: \\end{tabular*}}\n89: \\end{block}\n90: \n91: \n92: \\begin{block}{Adjoint, scalar product}\n93: {\\tablinesep=1.2ex\n94: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n95: $\\left(H\\T\\right)_{i,j} = H^*_{j,i} $ & adjoint (transpose conjugate)\\\\\n96: $\\Inner{\\V{x}}{\\V{y}} = \\sum_{n=0}^{N-1} x_n^*\\,y_n = \\V{x}\\T \\V{y}$ & dot (or scalar or inner) product\\\\\n97: $\\Inner{\\M{H}\\,\\V{x}}{\\V{y}} = \\Inner{\\V{x}}{\\M{H}\\T\\,\\V{y}}$ & adjoint formal definition\\\\\n98: $\\left(\\alpha\\,\\M{H} + \\beta\\,\\M{G}\\right)\\T = \\alpha^*\\,\\M{H}\\T + \\beta^*\\,\\M{G}\\T$&\\\\\n99: $\\left(\\M{H}\\,\\M{G}\\right)\\T = \\M{G}\\T\\,\\M{H}\\T$&\n100: \\end{tabular*}}\n101: \\end{block}\n102: \n103: \\begin{block}{Norms}\n104: {\\tablinesep=1.5ex\n105: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n106: $ \\Norm{\\V{x}}_2^2 = \\Inner{\\V{x}}{\\V{x}} = \\V{x}\\T\\V{x} = \\sum_{n=0}^{N-1} \\Abs{x_n}^2 = \\sum_{n=0}^{N-1} x_n^*\\,x_n$ & $\\ell^2$ norm\n107: \\end{tabular*}}\n108: {\\tablinesep=1.2ex\n109: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n110: $ \\Abs{ \\Inner{\\V{x}}{\\V{y}}} \\leq \\Norm{\\V{x}}_2 \\, \\Norm{\\V{y}}_2 $ & (Cauchy-Schwartz) \\\\\n111: $\\Norm{\\V{x} + \\V{y} }^2_2 = \\Norm{\\V{x}}^2_2 + \\Norm{\\V{y}}^2_2 + 2\\, \\Inner{\\V{x}}{\\V{y}} $ & \\\\\n112: $ \\Norm{\\V{x}}_p^p =\\sum_{n=0}^{N-1} \\Abs{x_n}^p\\ , \\,p\\geq 1 $ & $\\ell^p$ norm\\\\\n113: $ \\Norm{\\V{x} + \\V{y} }_p \\leq \\Norm{\\V{x}}_p + \\Norm{\\V{y}}_p$ & triangular inequality\\\\\n114: $\\Norm{\\M{H}}^2_F = \\sum_{n,m} \\Abs{H_{i,j}}^2 = \\tr(\\M{H}\\T\\M{H}) $& Frobenius norm \n115: \\end{tabular*}}\n116: \\end{block}\n117: \n118: \\begin{block}{Inverse}\n119: $\\M{H}\\in \\Complexes^{N\\times N}$ is called invertible (also nonsingular or nondegenerate) if there exists a matrix $\\M{G}$ such that:\n120: \\begin{align*}\n121: \\M{H} \\M{G} = \\M{G} \\M{H} = \\M{I}\n122: \\end{align*}\n123: $\\M{G} = \\M{H}^{-1}$ is unique and is the inverse of $\\M{H}$\\\\\n124: {\\tablinesep=1.1ex\n125: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n126: $\\left(\\M{H}\\,\\M{M}\\right)^{-1} = \\M{M}^{-1}\\,\\M{H}^{-1}$& for any $\\M{H}\\,,\\M{M}$ invertible\\\\\n127: $\\left(\\M{H}\\T\\right)^{-1} = \\left(\\M{H}^{-1}\\right)\\T$& \n128: \\end{tabular*}}\n129: \\end{block}\n130: \n131: \n132: \n133: \\end{column}\n134: \n135: \n136: \\begin{column}{0.5\\textwidth - .5cm}\n137: \n138: \n139: \\begin{block}{Eigenvalue \\& eigenvectors of $\\M{H} \\in \\Complexes^{N\\times N}$}\n140: $\\lambda_i\\in \\Complexes$ and $\\V{v}_i\\in \\Complexes^{N}$ are the $i^\\text{th}$ eigenvalue and eigenvector respectively. They satisfy:\n141: \\begin{align*}\n142: \\M{H}\\,\\V{v}_i = \\lambda_i\\,\\V{v}_i\n143: \\end{align*}\n144: It leads to the eigendecomposition:\n145: \\begin{align*}\n146: \\M{H} = \\M{Q}\\,\\diag(\\V{\\lambda})\\,\\M{Q}^{-1}\\,,\n147: \\end{align*}\n148: where the columns of $\\M{V}$ are the $N$ eigenvectors of $\\M{H}$.\n149: \\begin{itemize}\n150: \\item $\\V{\\lambda} = \\eig(\\M{H})$ is the spectrum of $\\M{H}$,\n151: \\item $C = \\frac{\\max\\Abs{\\V{\\lambda}}}{\\min\\Abs{\\V{\\lambda}}}$ is the condition number,\n152: \\item $\\rank(\\M{H})$ is the number of non-zero element of $\\V{\\lambda}$,\n153: \\item if $\\lambda_i\\neq 0,\\,\\forall i$, $\\M{H} $ is invertible and $\\M{H}^{-1} = \\M{Q}\\,\\diag(\\V{\\lambda})^{-1}\\,\\M{Q}^{-1}\\,$,\n154: \\end{itemize}\n155: \\end{block}\n156: \n157: \n158: \\begin{block}{Peculiar matrices}\n159: \\begin{itemize}\n160: \\item {\\bf Unitary:} $\\M{Q}\\T\\, \\M{Q} = \\M{Q}\\, \\M{Q}\\T = \\M{I}$\n161: \\item {\\bf Hermitian:} $\\M{H}\\T= \\M{H}$ and $\\M{H} = \\M{Q}\\,\\diag(\\V{\\lambda})\\,\\M{Q}\\T$ with $\\V{\\lambda}\\in\\Reals^N$ and $\\M{Q}$ unitary\n162: \\item {\\bf Positive semi-definite:} $ \\lambda_i\\geq 0\\,,\\ \\forall i \\iff \\V{x}\\T\\M{H}\\V{x} \\geq 0, \\, \\forall \\V{x}$ \n163: \\item {\\bf Toeplitz:} $H_{i,j} = h_{i-j}$,\n164: \\item {\\bf Circulant:} Toeplitz with $H_{i,j}= h_{(i-j) \\mod N}$\n165: \\end{itemize}\n166: \\end{block}\n167: \n168: \\begin{block}{Trace and determinant} \n169: \\begin{itemize}\n170: \\item {\\bf trace:} $\\ \\tr(\\M{H}) = \\sum_n H_{n,n} = \\sum_n \\lambda_n $\n171: \\end{itemize}\n172: {\\tablinesep=1.1ex\n173: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n174: $\\tr(\\M{H}\\T) = \\tr(\\M{H})^*$& $\\tr(\\M{H}\\,\\M{G}) =\\tr(\\M{G}\\,\\M{H})$\\\\\n175: $\\tr(\\alpha\\,\\M{H}+\\beta\\,\\M{G}) =\\alpha\\,\\tr(\\M{H})+\\alpha\\,\\tr(\\M{H})$& \\\\\n176: \\end{tabular*}}\n177: \\begin{itemize}\n178: \\item {\\bf determinant:} $\\ \\det(\\M{H}) = \\prod_n \\lambda_n $\n179: \\end{itemize}\n180: {\\tablinesep=1.1ex\n181: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n182: $\\det(\\M{H}) \\neq 0 \\iff \\M{H} $ is invertible & $\\det(\\M{H}\\T) = \\det(\\M{H})^*$\\\\\n183: $\\det(\\M{H}\\,\\M{G}) =\\det(\\M{H})\\,\\det(\\M{G})$& $\\det(\\M{H}^{-1})= 1/ \\det(\\M{H})$\n184: \\end{tabular*}}\n185: \\end{block}\n186: \n187: \n188: \\begin{block}{Singular value decomposition}\n189: For all matrices $\\M{H}\\in \\Complexes^{N\\times M}$ there exists two unitary matrices $\\M{U} \\in \\Complexes^{N\\times N}$ and $\\M{V} \\in \\Complexes^{M\\times M}$ and a real non-negative diagonal matrix $\\M{\\Sigma} \\in \\Complexes^{N\\times M}$ (singular values: $\\sigma_i = \\Sigma_{i,i}\\,,\\ \\forall i\\leq \\min(M,N)$) subject to:\n190: \\begin{align*}\n191: \\M{H} = \\M{U}\\,\\M{\\Sigma}\\,\\M{V}\\T\n192: \\end{align*}\n193: \\vspace{-2em}\\begin{itemize}\n194: \\item columns of $\\M{U}$ are eigenvectors of $\\M{H}\\,\\M{H}\\T$, \n195: \\item columns of $\\M{V}$ are eigenvectors of $\\M{H}\\T\\,\\M{H}$, \n196: \\item $\\M{\\Sigma} = \\sqrt{\\diag\\left(\\eig\\left(\\M{H}\\,\\M{H}\\T\\right)\\right)} $,\n197: \\item $\\Norm{\\M{H}}^2_F = \\sum_{i} \\sigma_i^2 $\n198: \\item $\\rank(\\M{H})$: number of non zero singular values,\n199: % \\item if $\\M{H}$ is Hermitian $\\M{U} = \\M{V} = \\M{Q}$\n200: \\end{itemize}\n201: \\end{block}\n202: \n203: \\begin{block}{Inversion lemmas \\& Woodbury identity}\n204: $ \\M{B}^{-1}\\M{V} \\left(\\M{A} - \\M{U}\\M{B}^{-1}\\M{V}\\right)^{-1} = \\left( \\M{B} - \\M{V}\\M{A}^{-1}\\M{U}\\right)^{-1}\\M{V}\\M{A}^{-1}$\\\\\n205: $ \\left(\\M{A} - \\M{U}\\M{B}^{-1}\\M{V}\\right)^{-1}\\M{U}\\M{B}^{-1} = \\M{A}^{-1}\\M{U}\\left( \\M{B} - \\M{V}\\M{A}^{-1}\\M{U}\\right)^{-1}$\\\\\n206: $\\left(\\M{A} + \\M{U}\\,\\M{B}\\,\\M{V} \\right)^{-1} = \\M{A}^{-1} - \\M{A}^{-1}\\,\\M{U}\\left( \\M{B}^{-1} + \\M{V}\\,\\M{A}^{-1}\\,\\M{U}\\right)^{-1}\\,\\M{V}\\,\\M{A}^{-1}$\n207: \\end{block}\n208: \n209: \\begin{block}{Moore-Penrose pseudo inverse}\n210: The pseudo inverse of $\\M{H} = \\M{U}\\,\\M{\\Sigma}\\,\\M{V}\\T$ writes $\\M{H}^+ = \\M{V}\\,\\M{\\Sigma}^+\\,\\M{U}\\T$ with $\\Sigma_{i,i}^+ = \\left\\{\n211: \\begin{array}{ll}\n212: \\Sigma^{-1}_{i,i} & \\text{if }\\sigma_i\\neq0 \\,, \\\\\n213: 0 & \\text{otherwise} \\,.\n214: \\end{array}\n215: \\right.$ \n216: \n217: \\begin{itemize}\n218: \\item $\\M{H}\\,\\M{H}^+\\,\\M{H} = \\M{H} $ and $ \\M{H}^+\\,\\M{H}\\,\\M{H}^+ = \\M{H}^+ $\n219: \\item $\\M{H}$ is square and $\\ \\rank(\\M{H}) = N \\Rightarrow \\M{H}^+ = \\M{H}^{-1}$\n220: \\item $\\M{H}$ is broad: $\\ \\rank(\\M{H}) \\leq N$ and $ \\M{H}^+ = \\M{H}\\T \\left(\\M{H}\\,\\M{H}\\T\\right)^{-1}$\n221: \\item $\\M{H}$ is tall: $\\ \\rank(\\M{H}) \\leq M $ and $\\M{H}^+ = \\left(\\M{H}\\T\\,\\M{H}\\right)^{-1}\\,\\M{H}\\T $ \n222: \\end{itemize}\n223: \\end{block}\n224: \n225: \\end{column}\n226: \n227: \n228: \\end{columns}\n229: \n230: \\end{frame}\n231: \n232: \\begin{frame}\n233: \\vspace{-1.5em}\n234: \\begin{columns}[onlytextwidth]\n235: \\begin{column}{0.5\\textwidth - .5cm}\n236: \\begin{block}{Derivatives} \n237: {\\tablinesep=1.1ex\n238: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n239: $J_{i,j}=\\left[\\PDer{\\V{x}}{\\V{y}}\\right]_{i,j} = \\PDer{x_i}{y_j} $ & Jacobian matrix\\\\\n240: $\\left[\\nabla f \\right]_i= \\PDer{f}{x_i}$ & Gradient vector\\\\\n241: $\\left[\\nabla^2 f\\right]_{i,j} = \n242: \\frac{\\partial^2 f}{\\partial x_i\\,\\partial x_j }$ & Hessian matrix\n243: \\end{tabular*}}\n244: \\end{block}\n245: \\begin{block}{Derivation rules} \n246: {\\tablinesep=1.1ex\n247: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n248: % $\\partial \\M{A} = 0$ \\\\\n249: $\\partial\\left(\\alpha\\, \\M{A}+ \\beta \\,\\M{B}\\right) = \\alpha\\,\\partial\\M{A} +\\beta\\,\\partial\\M{B}$ & linearity \\\\\n250: $\\partial\\left( \\M{A}\\,\\M{B}\\right) =\\left( \\partial\\M{A}\\right) \\, \\M{B} + \\M{A}\\, \\left(\\partial\\M{B}\\right)$ & \\\\\n251: $\\partial\\left( \\M{A}^{-1}\\right) = -\\M{A}^{-1}\\left( \\partial\\M{A}\\right)\\,\\M{A}^{-1}$ & \\\\\n252: $\\partial\\left( \\M{A}\\T\\right) = \\left( \\partial\\M{A}\\right)\\T$ & \\\\\n253: $\\PDer{\\V{x}\\T\\V{y}}{\\V{x}} = \\PDer{\\V{y}\\T\\V{x}}{\\V{x}} = \\V{y} $&\\\\\n254: $\\PDer{\\V{x}\\T\\M{A}\\V{x}}{\\V{x}} = \\left(\\M{A} + \\M{A}\\T\\right) \\V{x} $& \\\\\n255: % $\\PDer{f\\comp g}{x} =\\left( \\PDer{f}{x}\\comp g \\right)\\, \\PDer{g}{\\V{x}}$ & chain rule\\\\\n256: % $\\PDer{f\\comp g(\\V{x})}{\\V{x}} = \\sum_m^M \\PDer{f}{\\left[g(\\V{x})\\right]_m}\\, \\PDer{\\left[g(\\V{x})\\right]_m}{\\V{x}}$ & chain rule\\\\\n257: $\\PDer{f\\comp g(\\V{x})}{\\V{x}} = \\At{\\sum_{m=0}^{M-1} \\PDer{f}{u_m}\\, \\PDer{u_m}{\\V{x}}}{\\V{u} = g(\\V{x})}$ & chain rule\\\\\n258: $\\PDer{\\left(\\M{A}\\,\\V{x}-\\V{y}\\right)\\T\\M{B}\\left(\\M{A}\\,\\V{x}-\\V{y}\\right)}{\\M{A}} = \\left(\\M{B} + \\M{B}\\T \\right)\\,\\left(\\M{A}\\,\\V{x}- \\V{y}\\right)\\,\\V{x}\\T$&\n259: \\end{tabular*}}\n260: \\end{block}\n261: \n262: \\begin{block}{Continuous Fourier transform}\n263: {\\tablinesep=1.2ex\n264: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n265: $\\FT{f}(\\omega) = \\F{f}(\\omega) = \\int_{-\\infty}^{+\\infty} f(t) \\E^{-\\TwoIPi\\,\\omega\\,t}\\,\\D{t}$& forward\\\\ \n266: $f(t) = \\IF{\\FT{f}}(t) = \\int_{-\\infty}^{+\\infty} f(\\omega) \\E^{\\TwoIPi\\,\\omega\\,t}\\,\\D{\\omega}$& inverse\n267: \\end{tabular*}}\n268: \n269: % {\\bf Properties}\n270: \n271: {\\tablinesep=1.3ex\n272: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n273: $\\F{\\alpha f + \\beta g} = \\alpha \\F{f} + \\beta \\F{g} $ & linearity\\\\ \n274: $\\F{f(t-t_0)} =\\E^{-\\TwoIPi\\,\\omega\\,t_0} \\F{f} $ & shift\\\\ \n275: $\\F{\\E^{\\TwoIPi\\,\\omega_0\\,t} f } = \\F{f}(\\omega-\\omega_0) $ & modulation\\\\ \n276: $\\F{f(a\\,t)} =\\frac{1}{\\Abs{a}} \\F{f}\\left(\\frac{\\omega}{a}\\right) $ & scaling\\\\\n277: $\\F{f^*}(\\omega) =\\F{f}^*(-\\omega) $ & conjugation\\\\\n278: $ \\int_{-\\infty}^{+\\infty} \\Abs{\\FT{f}(\\omega)}^2\\,\\D{\\omega} = \\int_{-\\infty}^{+\\infty} \\Abs{f(t)}^2\\,\\D{t} $ & Plancherel-Parseval\\\\\n279: $\\FT{f}(0) = \\int_{-\\infty}^{+\\infty} f(t)\\,\\D{t} $ & integration\\\\\n280: $\\F{f^{(n)}} = \\left(\\TwoIPi\\,\\omega\\right)^n\\,\\F{f}$ & differentiation\\\\\n281: $\\F{f\\ast g} =\\F{f}\\,\\F{g}$ & convolution\\\\\n282: $\\F{f\\star f} = \\Abs{\\F{f}}^2$ & autocorrelation\n283: \\end{tabular*}}\n284: \\end{block}\n285: \n286: \\begin{block}{Discrete Fourier Transform}\n287: {\\tablinesep=1.2ex\n288: \\begin{tabular*}{\\columnwidth}{@{\\extracolsep{\\fill}}l r }\n289: $ \\M{F}=\\begin{bmatrix}\n290: 1&1&1&\\cdots &1\\\\\n291: 1&\\omega &\\omega^{2}&\\cdots &\\omega^{N-1}\\\\\n292: 1&\\omega^{2}&\\omega^{4}&\\cdots &\\omega^{2(N-1)}\\\\\n293: % 1&\\omega^{3}&\\omega^{6}&\\omega^{9}&\\cdots &\\omega^{3(N-1)}\\\\\n294: \\vdots &\\vdots &\\vdots &\\ddots &\\vdots \\\\\n295: 1&\\omega^{N-1}&\\omega^{2(N-1)}&\\cdots &\\omega^{(N-1)(N-1)}\n296: \\end{bmatrix}$ & \n297: \\begin{tabular}{r} \n298: with $\\omega = \\E^{-\\frac{-2\\imath\\,\\pi }{N}}$ \\\\\n299: the $N^\\text{th}$ root of unity.\n300: \\end{tabular}\n301: \n```\n\nCompile log (tail):\n```\nrerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 30326 strings out of 467099\n 595250 string characters out of 5408265\n 1281544 words of memory out of 5000000\n 58959 multiletter control sequences out of 15000+600000\n 685801 words of font info for 153 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,27n,137p,1001b,1144s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 159543 bytes).\nPDF statistics:\n 75 PDF objects out of 1000 (max. 8388607)\n 46 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 57387 words of extra memory for PDF output out of 61914 (max. 10000000)\n```", "repo_url": "https://github.com/FerreolS/InverseProblemsCookbook"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " % brackets around your reference, \n % which is great for referencing gb4e examples. \n\n\\usepackage{siunitx} % Required for aligning numbers in a table or equation by decimal and digits, instead of characters.\n% Example: \n% 10.591 vs 10.591\n% 0.59 vs 0.59\n\\sisetup{\n round-mode = places, % Rounds numbers\n round-precision = 2 % to 2 places\n} \n\n%%############ PDFLATEX FONT SUPPORT ############", "replace": " % brackets around your reference, \n % which is great for referencing gb4e examples. \n\n%%############ PDFLATEX FONT SUPPORT ############", "type": "real"}], "reported_file": "sections/chapter2.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 35, "text": "Package array Error: Illegal pream-token (S): `c' used.", "file": "sections/chapter2.tex", "fileLabel": "chapter2.tex"}, {"line": 35, "text": "Package array Error: Illegal pream-token (S): `c' used.", "file": "main.tex", "fileLabel": null}], "log_tail": "ne 250.\n\n(./main.aux (./custom-commands.aux) (./sections/introduction.aux)\n(./sections/chapter2.aux) (./sections/chapter3.aux) (./sections/appendix.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 45273 strings out of 467745\n 1006837 string characters out of 5422257\n 1897224 words of memory out of 5000000\n 73782 multiletter control sequences out of 15000+600000\n 633903 words of font info for 79 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1747b,1442s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (15 pages, 67060 bytes).\n", "prompt": "The LaTeX file `sections/chapter2.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- sections/chapter2.tex line 35: Package array Error: Illegal pream-token (S): `c' used.\n- line 35: Package array Error: Illegal pream-token (S): `c' used.\n\nProject files:\n- .github/workflows/make_xelatex.yaml\n- LICENSE\n- Makefile\n- README.md\n- bibliography.bib\n- cclicenses.sty\n- custom-commands.tex\n- images/ai-results-improve.jpeg\n- main.tex\n- sections/abstract.tex\n- sections/acknowledgements.tex\n- sections/appendix.tex\n- sections/chapter2.tex\n- sections/chapter3.tex\n- sections/dedication.tex\n- sections/introduction.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nOther project files (edit them with ):\n\n`main.tex` (lines 10-60, line-numbered):\n```\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation]{uathesis} \n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: %%############ Package Usage ############\n31: % These are the packages that I recommend\n32: \n33: \\usepackage{fancyhdr} % cosmetics for better headings\n34: %%----This is an attempt to fix the header issue pointed out by Grad College- comment this section out if its not needed.\n35: \\fancypagestyle{plain}{\n36: \\lhead{}\n37: \\chead{}\n38: \\fancyhead[R]{\\thepage}\n39: \\fancyhead[L]{}\n40: \\fancyhead[C]{}\n41: \\renewcommand{\\headrulewidth}{0pt}\n42: \\fancyfoot{}\n43: \\setlength{\\footskip}{4.35004pt}\n44: }\n45: \\setlength{\\headheight}{20.5pt}\n46: \\pagestyle{plain}\n47: \n48: \\fancypagestyle{fancy}{\n49: \\fancyhead[R]{\\thepage}\n50: \\fancyhead[L]{\\leftmark}\n51: \\fancyhead[C]{}\n52: \\renewcommand{\\headrulewidth}{0pt}\n53: \\fancyfoot{}\n54: }\n55: \n56: %% This is an attempt at juryrigging an appendix\n57: \\usepackage{pdfpages}\n58: \n59: \n60: \\usepackage{xcolor} %broader color range and color options, allows you to define your own colors as RBG vectors\n```\n\n`uathesis.cls` (head and lines matching the log, line-numbered):\n```\n...\n28: \\NeedsTeXFormat{LaTeX2e}\n29: \\ProvidesClass{uathesis}[2005/08/09 University of Arizona Thesis Class]\n30: \n31: \\RequirePackage{ifthen}\n32: \\RequirePackage{tikz} % we need this for the watermark option\n33: \\RequirePackage{cclicenses} % This is used to generate the Creative Commons\n...\n37: \n38: \n...\n42: \n...\n44: \\newcommand{\\ThesisType}{\\emph{(please specify thesis, dissertation, or document as an option in the uathesis documentclass statement at the top of your file)}}\n45: \n46: \\DeclareOption{thesis}{%\n47: \t\\renewcommand{\\ThesisType}{Thesis}\n48: }\n49: \n50: \\DeclareOption{dissertation}{%\n51: \t\\renewcommand{\\ThesisType}{Dissertation}\n52: }\n53: \n54: \\DeclareOption{document}{%\n55: \t\\renewcommand{\\ThesisType}{Document}\n56: }\n57: \n58: \\newboolean{Copyright}\n59: \\setboolean{Copyright}{false}\n60: \\DeclareOption{copyright}{%\n61: \t\\setboolean{Copyright}{true}\n62: }\n63: \n...\n66: \\newboolean{CCBY}\n```\n\nCurrent content of `sections/chapter2.tex` (full file, line-numbered):\n```\n1: %!TEX root = ../dissertation.tex\n2: \n3: \\chapter[Chapter 2]{TitleofChapter}\n4: \n5: Let's make a figure out of a tree and position it right under our text:\n6: \n7: \\begin{figure}[h] %to understand figure positioning, please refer to: \n8: % https://www.overleaf.com/learn/latex/Inserting_Images\n9: \\centering\n10: \\begin{forest}\n11: [NP [DP] [N] ]\n12: \\end{forest}\n13: \\caption[A very special figure]{Caption}\n14: \\label{fig:mylabel}\n15: \\end{figure}\n16: \\todoNW{Example Todo Note from NW}\n17: \n18: Here is a table positioned at the top of the page, with the `S' column used to align numerical data by decimal points. Compare the second column to the third and fourth. Notice how text is enclosed in \\\\text\\{\\}, as `s' type columns read all characters as numbers, and will error out if other characters are not properly declared:\n19: \n20: \\begin{table}[t]\n21: \\centering\n22: \\footnotesize\n23: \\begin{tabularx}{0.85\\textwidth}{llSS}\n24: \\toprule\n25: Col 1 & Col 2 & \\text{Numerical column 3} & \\text{Numerical column 3} \\\\\n26: \\midrule\n27: 1 & 124 & 3 & 24.82 \\text{\\$} \\\\ \n28: 2 & 463 & 1000 & 0 \\text{\\$} \\\\ \n29: 3 & 675 & 564 & 0 \\text{\\$} \\\\ \n30: 4 & 175 & 33 & 241.139 \\text{\\$} \\\\ \n31: 5 & 357 & 56 & 13.5 \\text{\\$} \\\\ \n32: 6 & 15685 & 253 & 2.67 \\text{\\$} \\\\ \n33: 7 & 23 & \\text{unknown} & 27.27 \\text{\\$} \\\\ \n34: \\bottomrule\n35: \\end{tabularx}\n36: \\caption{Example of numerical table}\n37: \\label{tab:numerical-table}\n38: \\end{table}\n39: \n40: And here is a table which we position at the bottom:\n41: %% some custom definitions first\n42: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} \n43: %% here we define a custom column\n44: %% type, called `s', this will have the color as defined via HTML and a width of 3cm\n45: \n46: \\arrayrulecolor[HTML]{DB5800}\n47: \\colorlet{mycolor}{red!30!blue!50} %% here we define our own color, using red \n48: %% at 30% opacity and blue at 50%\n49: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n50: \\begin{table}[b!]\n51: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n52: \\hline\n53: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n54: \\hline\n55: Country Name or Area Name \\cellcolor{mycolor}\n56: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n57: \\hline\n58: Afghanistan & AF &AFG \\\\\n59: \\rowcolor{gray}\n60: Aland Islands & AX & ALA \\\\\n61: Albania &AL & ALB \\\\\n62: Algeria &DZ & DZA \\\\\n63: American Samoa & AS & ASM \\\\\n64: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n65: Angola & AO & AGO \\\\\n66: \\hline\n67: \\end{tabular}\n68: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n69: \\end{table}\n70: \n```\n\nCompile log (tail):\n```\nne 250.\n\n(./main.aux (./custom-commands.aux) (./sections/introduction.aux)\n(./sections/chapter2.aux) (./sections/chapter3.aux) (./sections/appendix.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 45273 strings out of 467745\n 1006837 string characters out of 5422257\n 1897224 words of memory out of 5000000\n 73782 multiletter control sequences out of 15000+600000\n 633903 words of font info for 79 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1747b,1442s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (15 pages, 67060 bytes).\n```", "target": "\n<<<<<<< SEARCH\n % brackets around your reference, \n % which is great for referencing gb4e examples. \n\n%%############ PDFLATEX FONT SUPPORT ############\n=======\n % brackets around your reference, \n % which is great for referencing gb4e examples. \n\n\\usepackage{siunitx} % Required for aligning numbers in a table or equation by decimal and digits, instead of characters.\n% Example: \n% 10.591 vs 10.591\n% 0.59 vs 0.59\n\\sisetup{\n round-mode = places, % Rounds numbers\n round-precision = 2 % to 2 places\n} \n\n%%############ PDFLATEX FONT SUPPORT ############\n>>>>>>> REPLACE\n", "id": "github2_remo-help__UofA-dissertation-template-for-linguistics__494df9b", "doc": "github_multi2/remo-help__UofA-dissertation-template-for-linguistics__494df9b", "mutation": "real", "source": "github", "repo": "remo-help/UofA-dissertation-template-for-linguistics", "sha": "494df9b58a72e079347c83918e61591e018a1c04", "parent_sha": "6f7eb24d91d6beda823b30b55b3610435792110d", "license": "CC0-1.0", "url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics/commit/494df9b58a72e079347c83918e61591e018a1c04", "changed_files": ["dissertation.tex"], "original_root": "dissertation.tex", "n_files": 12, "engine": "xelatex", "error_category": "Package array Error: Illegal pream-token (S): 'X' used.", "prompt_v1": "The LaTeX file `sections/chapter2.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- sections/chapter2.tex line 35: Package array Error: Illegal pream-token (S): `c' used.\n- line 35: Package array Error: Illegal pream-token (S): `c' used.\n\nProject files:\n- .github/workflows/make_xelatex.yaml\n- LICENSE\n- Makefile\n- README.md\n- bibliography.bib\n- cclicenses.sty\n- custom-commands.tex\n- images/ai-results-improve.jpeg\n- main.tex\n- sections/abstract.tex\n- sections/acknowledgements.tex\n- sections/appendix.tex\n- sections/chapter2.tex\n- sections/chapter3.tex\n- sections/dedication.tex\n- sections/introduction.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nCurrent content of `sections/chapter2.tex` (full file, line-numbered):\n```\n1: %!TEX root = ../dissertation.tex\n2: \n3: \\chapter[Chapter 2]{TitleofChapter}\n4: \n5: Let's make a figure out of a tree and position it right under our text:\n6: \n7: \\begin{figure}[h] %to understand figure positioning, please refer to: \n8: % https://www.overleaf.com/learn/latex/Inserting_Images\n9: \\centering\n10: \\begin{forest}\n11: [NP [DP] [N] ]\n12: \\end{forest}\n13: \\caption[A very special figure]{Caption}\n14: \\label{fig:mylabel}\n15: \\end{figure}\n16: \\todoNW{Example Todo Note from NW}\n17: \n18: Here is a table positioned at the top of the page, with the `S' column used to align numerical data by decimal points. Compare the second column to the third and fourth. Notice how text is enclosed in \\\\text\\{\\}, as `s' type columns read all characters as numbers, and will error out if other characters are not properly declared:\n19: \n20: \\begin{table}[t]\n21: \\centering\n22: \\footnotesize\n23: \\begin{tabularx}{0.85\\textwidth}{llSS}\n24: \\toprule\n25: Col 1 & Col 2 & \\text{Numerical column 3} & \\text{Numerical column 3} \\\\\n26: \\midrule\n27: 1 & 124 & 3 & 24.82 \\text{\\$} \\\\ \n28: 2 & 463 & 1000 & 0 \\text{\\$} \\\\ \n29: 3 & 675 & 564 & 0 \\text{\\$} \\\\ \n30: 4 & 175 & 33 & 241.139 \\text{\\$} \\\\ \n31: 5 & 357 & 56 & 13.5 \\text{\\$} \\\\ \n32: 6 & 15685 & 253 & 2.67 \\text{\\$} \\\\ \n33: 7 & 23 & \\text{unknown} & 27.27 \\text{\\$} \\\\ \n34: \\bottomrule\n35: \\end{tabularx}\n36: \\caption{Example of numerical table}\n37: \\label{tab:numerical-table}\n38: \\end{table}\n39: \n40: And here is a table which we position at the bottom:\n41: %% some custom definitions first\n42: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} \n43: %% here we define a custom column\n44: %% type, called `s', this will have the color as defined via HTML and a width of 3cm\n45: \n46: \\arrayrulecolor[HTML]{DB5800}\n47: \\colorlet{mycolor}{red!30!blue!50} %% here we define our own color, using red \n48: %% at 30% opacity and blue at 50%\n49: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n50: \\begin{table}[b!]\n51: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n52: \\hline\n53: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n54: \\hline\n55: Country Name or Area Name \\cellcolor{mycolor}\n56: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n57: \\hline\n58: Afghanistan & AF &AFG \\\\\n59: \\rowcolor{gray}\n60: Aland Islands & AX & ALA \\\\\n61: Albania &AL & ALB \\\\\n62: Algeria &DZ & DZA \\\\\n63: American Samoa & AS & ASM \\\\\n64: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n65: Angola & AO & AGO \\\\\n66: \\hline\n67: \\end{tabular}\n68: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n69: \\end{table}\n70: \n```\n\nCompile log (tail):\n```\nne 250.\n\n(./main.aux (./custom-commands.aux) (./sections/introduction.aux)\n(./sections/chapter2.aux) (./sections/chapter3.aux) (./sections/appendix.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 45273 strings out of 467745\n 1006837 string characters out of 5422257\n 1897224 words of memory out of 5000000\n 73782 multiletter control sequences out of 15000+600000\n 633903 words of font info for 79 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1747b,1442s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (15 pages, 67060 bytes).\n```", "repo_url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\incacknowledgements{sections/acknowledgements}", "replace": "\\incacknowledgements{acknowledgements}", "type": "real"}, {"file": "main.tex", "search": "\\incdedication{sections/dedication}", "replace": "\\incdedication{dedication}", "type": "real"}, {"file": "main.tex", "search": "\\incabstract{sections/abstract}", "replace": "\\incabstract{abstract}", "type": "real"}, {"file": "main.tex", "search": "\\include{sections/introduction}\n\\include{sections/chapter2}\n\\include{sections/chapter3}", "replace": "\\include{introduction}\n\\include{chapter2}\n\\include{chapter3}", "type": "real"}, {"file": "main.tex", "search": "\\include{sections/appendix}", "replace": "\\include{appendix}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 99, "text": "Package fontspec Error:", "file": "main.tex", "fileLabel": null}], "log_tail": "er3.tex.\n\\openout2 = `appendix.aux'.\n\nNo file appendix.tex.\n\nLaTeX Warning: Empty bibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 397B19BD922B766B4A438D2343CA47A8;329.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44118 strings out of 473832\n 979571 string characters out of 5729480\n 1865388 words of memory out of 5000000\n 66581 multiletter control sequences out of 15000+600000\n 563355 words of font info for 60 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1711b,850s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (9 pages, 25556 bytes).\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 99: Package fontspec Error:\n\nProject files:\n- .github/workflows/makefile.yml\n- LICENSE\n- Makefile\n- README.md\n- bibliography.bib\n- cclicenses.sty\n- custom-commands.tex\n- main.tex\n- sections/abstract.tex\n- sections/acknowledgements.tex\n- sections/appendix.tex\n- sections/chapter2.tex\n- sections/chapter3.tex\n- sections/dedication.tex\n- sections/introduction.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nOther project files (edit them with ):\n\n`bibliography.bib` (full file, line-numbered):\n```\n1: @ARTICLE{Chimsky2022,\n2: author = {Chimsky, Nim},\n3: title = \"{The Illusion of Language}\",\n4: journal = {Natural Language and Linguistic Theory},\n5: keywords = {Linguistics},\n6: year = 2022,\n7: volume = 25,\n8: number = 1,\n9: }\n10: \n11: @book{chomsky-why-2016,\n12: \ttitle = {Why Only Us: Language and Evolution},\n13: \tisbn = {978-0-262-33335-1},\n14: \turl = {https://direct.mit.edu/books/book/4464/Why-Only-UsLanguage-and-Evolution},\n15: \tshorttitle = {Why Only Us},\n16: \tpublisher = {The {MIT} Press},\n17: \tauthor = {Chomsky, Noam and Berwick, Robert C.},\n18: \turldate = {2022-05-02},\n19: \tyear = {2016},\n20: \tlangid = {english},\n21: \tdoi = {10.7551/mitpress/10684.001.0001},\n22: }\n23: \n```\n\n`uathesis.cls` (head and lines matching the log, line-numbered):\n```\n...\n28: \\NeedsTeXFormat{LaTeX2e}\n29: \\ProvidesClass{uathesis}[2005/08/09 University of Arizona Thesis Class]\n30: \n31: \\RequirePackage{ifthen}\n32: \\RequirePackage{tikz} % we need this for the watermark option\n33: \\RequirePackage{cclicenses} % This is used to generate the Creative Commons\n...\n37: \n38: \n...\n42: \n...\n44: \\newcommand{\\ThesisType}{\\emph{(please specify thesis, dissertation, or document as an option in the uathesis documentclass statement at the top of your file)}}\n45: \n46: \\DeclareOption{thesis}{%\n47: \t\\renewcommand{\\ThesisType}{Thesis}\n48: }\n49: \n50: \\DeclareOption{dissertation}{%\n51: \t\\renewcommand{\\ThesisType}{Dissertation}\n52: }\n53: \n54: \\DeclareOption{document}{%\n55: \t\\renewcommand{\\ThesisType}{Document}\n56: }\n57: \n58: \\newboolean{Copyright}\n59: \\setboolean{Copyright}{false}\n60: \\DeclareOption{copyright}{%\n61: \t\\setboolean{Copyright}{true}\n62: }\n63: \n...\n66: \\newboolean{CCBY}\n```\n\n`custom-commands.tex` (full file, line-numbered):\n```\n1: % this file can host your custom commands so they do not clutter your mainfile\n2: \n3: % for documentation on LaTeX commands see: https://www.overleaf.com/learn/latex/Commands#Simple_commands\n4: \n5: \n6: %%% The following allows dagger footnote on chapter titles\n7: %%% with no number. Useful for designating previously \n8: %%% published work.\n9: \\newcounter{daggerfootnote}\n10: \\newcommand*{\\daggerfootnote}[1]{%\n11: \\setcounter{daggerfootnote}{\\value{footnote}}%\n12: \\renewcommand*{\\thefootnote}{\\fnsymbol{footnote}}%\n13: \\footnote[2]{#1}%\n14: \\setcounter{footnote}{\\value{daggerfootnote}}%\n15: \\renewcommand*{\\thefootnote}{\\arabic{footnote}}%\n16: }\n17: \n18: \n19: %% Custom ToDo notes\n20: %% Useage: \\done{completed todo text, prints 'done'}, \\nw{todos from nw}, \\todocite{prints the work cite}\n21: %% todo notes for completed todos:\n22: \\newcommand{\\done}[1]{\\todo[color=green!40, prepend, caption={Done}]{#1}}\n23: %% todo notes by self:\n24: \\newcounter{todocounter}\n25: \\newcommand{\\todonum}[2][]\n26: {\\stepcounter{todocounter}\\todo[#1]\n27: {\\thetodocounter: #2}}\n28: %% todo notes by NW\n29: \\newcommand{\\todoNW}[2][]\n30: {\\stepcounter{todocounter}\\todo[color=orange!40, author=NW, noprepend]{\\thetodocounter: #2}} \n31: \n32: %% todo notes for adding citation\n33: \\newcommand{\\todocite}[2][]\n34: {\\stepcounter{todocounter}\\todo[inlinewidth=2.2cm, noinlinepar, color=blue!40, prepend, caption={CITE}]\n35: {\\thetodocounter: #2}} \n36: \n37: %% todo notes for reverse outline\n38: \\newcommand{\\reverseOutline}[2][]\n39: {\\stepcounter{todocounter}\\todo[color=grey!40, noprepend]{\\thetodocounter: #2}}\n40: \n41: \n```\n\n`sections/introduction.tex` (full file, line-numbered):\n```\n1: %!TEX root = ../dissertation.tex\n2: \n3: \\chapter[Introduction]% the [square brackets] define the name of this in the TOC\n4: {Introduction\\daggerfootnote{This chapter has been published previously as \\citet{Chimsky2022}.}}\\label{chap:Intro} %we define a label for this chapter\n5: \n6: Here are different cite commands as demonstrated in a \\emph{gb4e} list:\n7: \n8: \\begin{exe}\n9: \\ex \\textbackslash cite : \\cite{chomsky-why-2016}\n10: \\ex now here is a sublist \\begin{xlista}\n11: \\ex \\textbackslash citep : \\citep{chomsky-why-2016}\n12: \\ex \\textbackslash citet{} : \\citet{chomsky-why-2016}\n13: \\end{xlista}\n14: \\ex\\label{item} now there is another numbered item\n15: \\end{exe}\n16: And now I reference that item with \\textbackslash eqref: \\eqref{item}\n17: \n18: This begins a discussion of Chimsky \\todocite{}\n19: %\\begin{figure}\n20: %\\centering\n21: %\\includegraphics[angle=0,width=\\columnwidth]{fig1.pdf}\n22: %\\caption[]{}\n23: %\\label{fig1}\n24: %\\end{figure}\n25: \n```\n\n`sections/chapter2.tex` (full file, line-numbered):\n```\n1: %!TEX root = ../dissertation.tex\n2: \n3: \\noindent Add acknowledgements here. \n4: \\todonum{Complete this text.}\n5: \\chapter[Chapter 2]{TitleofChapter}\n6: \n7: Let's make a figure out of a tree and position it right under our text:\n8: \n9: \\begin{figure}[h] %to understand figure positioning, please refer to: \n10: % https://www.overleaf.com/learn/latex/Inserting_Images\n11: \\centering\n12: \\begin{forest}\n13: [NP [DP] [N] ]\n14: \\end{forest}\n15: \\caption[A very special figure]{Caption}\n16: \\label{fig:mylabel}\n17: \\end{figure}\n18: \\todoNW{Example Todo Note from NW}\n19: \n20: And here is a table which we position at the bottom:\n21: %%%%%%%%% some custom definitions first\n22: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} %here we define a custom column\n23: % type, called 's', this will have the color as defined via HTML and a width of 3cm\n24: \\arrayrulecolor[HTML]{DB5800}\n25: \\colorlet{mycolor}{red!30!blue!50} % here we define our own color, using red \n26: % at 30% opacity and blue at 50%\n27: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n28: \\begin{table}[b!]\n29: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n30: \\hline\n31: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n32: \\hline\n33: Country Name or Area Name \\cellcolor{mycolor}\n34: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n35: \\hline\n36: Afghanistan & AF &AFG \\\\\n37: \\rowcolor{gray}\n38: Aland Islands & AX & ALA \\\\\n39: Albania &AL & ALB \\\\\n40: Algeria &DZ & DZA \\\\\n41: American Samoa & AS & ASM \\\\\n42: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n43: Angola & AO & AGO \\\\\n44: \\hline\n45: \\end{tabular}\n46: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n47: \\end{table}\n48: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Sample Dissertation, Thesis, or Document %\n2: % for use with the %\n3: % University of Arizona Thesis Class, %\n4: % uathesis.cls %\n5: %------------------------------------------%\n6: \n7: % This is an adapted version of J.J. Charfman's template which can be\n8: % found here: https://da.overleaf.com/latex/templates/university-of-arizona-astronomy-thesis-template/tsfqcgnfmjcx\n9: % This template is adapted for linguistics, with support for XeLaTeX, duly tested on . The uncommented line\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation]{uathesis} \n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: %%############ Package Usage ############\n31: % These are the packages that I recommend\n32: \n33: \\usepackage{fancyhdr} % cosmetics for better headings\n34: %%----This is an attempt to fix the header issue pointed out by Grad College- comment this section out if its not needed.\n35: \\fancypagestyle{plain}{\n36: \\lhead{}\n37: \\chead{}\n38: \\fancyhead[R]{\\thepage}\n39: \\fancyhead[L]{}\n40: \\fancyhead[C]{}\n41: \\renewcommand{\\headrulewidth}{0pt}\n42: \\fancyfoot{}\n43: \\setlength{\\footskip}{4.35004pt}\n44: }\n45: \\setlength{\\headheight}{20.5pt}\n46: \\pagestyle{plain}\n47: \n48: \\fancypagestyle{fancy}{\n49: \\fancyhead[R]{\\thepage}\n50: \\fancyhead[L]{\\leftmark}\n51: \\fancyhead[C]{}\n52: \\renewcommand{\\headrulewidth}{0pt}\n53: \\fancyfoot{}\n54: }\n55: \n56: %% This is an attempt at juryrigging an appendix\n57: \\usepackage{pdfpages}\n58: \n59: \n60: \\usepackage{xcolor} %broader color range and color options, allows you to define your own colors as RBG vectors\n61: \n62: %%############ Packages for Tables and Graphics ############\n63: \\usepackage{graphicx} % allows insertion of pictures etc\n64: \\graphicspath{{images/}}\n65: %% Packages for Tables and Graphics:\n66: \\usepackage{placeins} % helps with floats and placing elements within sections\n67: \\usepackage{float} %trying to get my images where I want them\n68: \n69: % \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n70: % \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n71: \\usepackage{tabularx}\n72: \\usepackage{booktabs}\n73: \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n74: \\usepackage{colortbl} %tables with color celss\n75: \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n76: \\usepackage{longtable} %trying to allow tables to go onto next page\n77: \\usepackage{array} % trying to control table cell size\n78: \n79: \\usepackage{enumitem} % allows advanced controls of tables and example numbering\n80: \n81: \\usepackage{amsmath} %amsmath allows the use of \\eqref{}, \n82: % eqref will automatically put \n83: % brackets around your reference, \n84: % which is great for referencing gb4e examples. \n85: \n86: %%############ PDFLATEX FONT SUPPORT ############\n87: %%Uncomment this section if your compiler is PDFLATEX\n88: %%inputenc allows you to directly input utf-8 characters. This means you can just type Árüz instead of \\'Ar\\\"uz:\n89: \n90: % \\usepackage[utf8]{inputenc} \n91: \n92: %%############ XELATEX FONT SUPPORT ############\n93: %% Packages for Fonts. To add a new font and call it alongside the main font of the text, use the format '\\newfontfamily\\nameofcommand{Font Name}' as shown below.\n94: \n95: \\usepackage{times} %enable if you want to use a times font\n96: \\usepackage{fontspec}\n97: % \\setmainfont{Times} % Uncomment if you want to use Times\n98: \\newfontfamily\\ipa{Doulos SIL} %ALT FONT for IPA symbols\n99: \n100: %% ############ Packages for Citations: ############ \n101: %% LaTeX has two bibliography compiling systems, natbib and biber. Choose the one that you intend to use:\n102: \n103: %% 1. NATBIB:\n104: %% natbib is available on most systems, and is\n105: \t\t\t\t\t% terribly handy.\n106: \t\t\t\t\t% We are using biber for this template, but leaving natbib in as an option\n107: % if you want to use natbib instead of biber/biblatex, you need to \n108: % comment out the next package and the % addbibresource params\n109: % \\usepackage{natbib}\n110: % \\setcitestyle{semicolon,aysep={},yysep={,},notesep={:}} \n111: \n112: %% 2. BIBER:\n113: \\usepackage[backend=biber,\n114: style=unified, % we are using the LSA unified style sheet here\n115: maxcitenames=2,\n116: maxbibnames=99,\n117: natbib]{bib latex}\n118: \\addbibresource{bibliography.bib}\n119: \\renewcommand{\\bibname}{References}\n120: \n121: %% ###################### TODONOTES #######################\n122: %% Use one of the following two package invocations. The first is for the final version, the second for adding todonotes and comments:\n123: \n124: %% 1. DISABLE TODONOTES:\n125: %\\usepackage[disable]{todonotes}\n126: %% 2. ENABLE TODONOTES:\n127: \\usepackage[colorinlistoftodos,backgroundcolor= yellow, bordercolor= black]{todonotes}\n128: \\setuptodonotes{inline, prepend, caption={ToDo}}\n129: %% #######################################\n130: \t\n131: \n132: % If you are using hyper-ref (recommended), this command must go after all \n133: % other package inclusions (from the hyperref package documentation).\n134: % The purpose of hyperref is to make the PDF created extensively\n135: % cross-referenced.\n136: %allows to use references as links [hidelinks] makes sure there are no borders around the link, gives us \\autoref\n137: \\usepackage[hidelinks]{hyperref}\n138: \n139: %% ########## Linguistics Packages ############\n140: \\usepackage{tikz} %graph solution that should help me get a nice vowel chart\n141: \\usepackage{tipa} %enables an IPA environment\n142: \\usepackage{qtree} %allows simple trees\n143: \\usepackage[linguistics]{forest} %allows more complex trees\n144: \\usepackage{gb4e} %manages example numbering, has to be last package in pre-amble, will break document otherwise\n145: \n146: %% ########## Set up values for Title Page ############\n147: \n148: \\completetitle{Title}\n149: \\fullname{}\t\t\t% Grad college wants your full name here.\n150: \\degreename{Doctor of Philosophy}\t% Title of your degree.\n151: \\degreemajor{Linguistics} % Degree major\n152: \n153: \\counterwithout{footnote}{chapter} %disable this if you want your footnotes to reset their counter for each chapter\n154: \n155: % the inlinetitle below will be used on the graduate college signature page if you uncomment it. \n156: % This is useful if your completetitle uses a linebreak or other command that would break an inline use of that title. \n157: % If you leave this commented it will do nothing. Uncomment and give it a value to activate. The change will be visible on page 2.\n158: \n159: %\\inlinetitle{}\n160: \n161: \\begin{document}\n162: \n163: \\include{custom-commands.tex} % we are hosting all the custom commands we are writing in a seperate file\n164: \n165: % tocdepth defines how many layers of sections/subsections are displayed in your table of content. The hierarchy works like this:\n166: % Chapters (1)> Sections (2) > Subsections (3) > SubSubsections (4) > Paragraphs (5)\n167: % Default = 4\n168: %\\setcounter{tocdepth}{5} \n169: % secnumdepth does the same work, except it numbers your sections. Chapters are automatically numbered, so setting this to 4 will give you numbered paragraphs. Default = 3\n170: %\\setcounter{secnumdepth}{4}\n171: \n172: \n173: \n174: % Set up the title page\n175: \\maketitlepage\n176: {DEPARTMENT OF LINGUISTICS}\t% Title of your department.\n177: {2019}\t\t\t\t\t\t\t\n178: \n179: % Insert the approval form. Note that for electronic submission\n180: % of your Ph. D. dissertation, you must bring *two* copies of the\n181: % approval page to your final defense. These must be signed by\n182: % the committee. Make two photocopies: one for the department\n183: % and the other for your records. Then, bring the two signed \n184: % originals to the graduate college when you submit the \n185: % final version of the dissertation to the University of Arizona.\n186: % if you want to change the number of lines displayed, you need to do this in the uathesis.cls class, check the \\approval command\n187: \\approval\n188: {}\t\t% Defense Date\t\n189: {}\t% Dissertation Director\n190: {}\t% 1st committee member\n191: {}\t\t% 2nd committee member\n192: {}\t\t% 3rd committee member\n193: {}\t\t% 4th committee member\n194: {}\t\t% 5th committee member\n195: {}\t\t% 6th committee member\n196: \n197: % if you want to load your approval with a UA watermark, use this command, which uses the same syntax as the one above:\n198: % \\approvalWithWM{}{}{}{}{}{}{}{}\n199: \n200: % Include the ``Statement by Author'' for Dissertations\n201: \\statementbyauthor\n202: % If this is a Thesis, use the following form, with your thesis director's\n203: % name and title in the square brackets like so (you should also omit the \n204: % approval form insertion above):\n205: %\\statementbyauthor[Jane M. Doe\\\\Professor of Chemistry]\n206: \n207: % Include the ``Acknowledgements''\n208: \\incacknowledgements{acknowledgements}\n209: \n210: % Include the ``Dedication''\n211: \\incdedication{dedication}\n212: \n213: % Create a ``Table of Contents''\n214: \\tableofcontents\n215: \n216: % Create a ``List of Figures''\n217: \\listoffigures\n218: \n219: % Create a ``List of Tables''\n220: \\listoftables\n221: \n222: % Include the ``Abstract''\n223: \\incabstract{abstract}\n224: \n225: % Include the various chapters\n226: \\include{introduction}\n227: \\include{chapter2}\n228: \\include{chapter3}\n229: \n230: \n231: % Include the various appendices\n232: \\appendix\n233: \\include{appendix}\n234: \n235: \n236: % Switch the spacing to single-spaced for the references\n237: \\renewcommand{\\baselinestretch}{1}\t\t% changing the value\n238: \\small\\normalsize\t\t\t\t\t\t% switch size to make the value take\n239: \n240: % Use the below if using natbib\n241: % this is where your natbib stylesheet is referenced\n242: %\\bibliographystyle{sp-lsa.bst}\t% S\\&P bibliography style\n243: % S\\&P, an LSA publication, meets the LSA guidelines. \n244: % if you wish to use the UA citation style instead, call \"uabibnat.bst\" in the \\bibliographystyle\n245: %\\bibliography{bibliography}\n246: \n247: %% use this for biblatex/biber\n248: %% 'title = ' changes the heading of the bibliography section,\n249: %% and 'heading = ' ensures it is listed in the ToC \n250: \\printbibliography[title = {REFERENCES}, heading=bibintoc]\n251: \n252: \\end{document}\n253: \n```\n\nCompile log (tail):\n```\ner3.tex.\n\\openout2 = `appendix.aux'.\n\nNo file appendix.tex.\n\nLaTeX Warning: Empty bibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 397B19BD922B766B4A438D2343CA47A8;329.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44118 strings out of 473832\n 979571 string characters out of 5729480\n 1865388 words of memory out of 5000000\n 66581 multiletter control sequences out of 15000+600000\n 563355 words of font info for 60 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1711b,850s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (9 pages, 25556 bytes).\n```", "target": "\n<<<<<<< SEARCH\n\\include{appendix}\n=======\n\\include{sections/appendix}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\include{introduction}\n\\include{chapter2}\n\\include{chapter3}\n=======\n\\include{sections/introduction}\n\\include{sections/chapter2}\n\\include{sections/chapter3}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\incabstract{abstract}\n=======\n\\incabstract{sections/abstract}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\incdedication{dedication}\n=======\n\\incdedication{sections/dedication}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\incacknowledgements{acknowledgements}\n=======\n\\incacknowledgements{sections/acknowledgements}\n>>>>>>> REPLACE\n", "id": "github2_remo-help__UofA-dissertation-template-for-linguistics__eb03667", "doc": "github_multi2/remo-help__UofA-dissertation-template-for-linguistics__eb03667", "mutation": "real", "source": "github", "repo": "remo-help/UofA-dissertation-template-for-linguistics", "sha": "eb0366745c5c6070c4faa2f5ee8d89b563d1aa76", "parent_sha": "197c91554fcba66107e726b2aeb2fa265ee5abe9", "license": "CC0-1.0", "url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics/commit/eb0366745c5c6070c4faa2f5ee8d89b563d1aa76", "changed_files": ["dissertation.tex"], "original_root": "dissertation.tex", "n_files": 12, "engine": "xelatex", "error_category": "Package fontspec Error:", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 99: Package fontspec Error:\n\nProject files:\n- .github/workflows/makefile.yml\n- LICENSE\n- Makefile\n- README.md\n- bibliography.bib\n- cclicenses.sty\n- custom-commands.tex\n- main.tex\n- sections/abstract.tex\n- sections/acknowledgements.tex\n- sections/appendix.tex\n- sections/chapter2.tex\n- sections/chapter3.tex\n- sections/dedication.tex\n- sections/introduction.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Sample Dissertation, Thesis, or Document %\n2: % for use with the %\n3: % University of Arizona Thesis Class, %\n4: % uathesis.cls %\n5: %------------------------------------------%\n6: \n7: % This is an adapted version of J.J. Charfman's template which can be\n8: % found here: https://da.overleaf.com/latex/templates/university-of-arizona-astronomy-thesis-template/tsfqcgnfmjcx\n9: % This template is adapted for linguistics, with support for XeLaTeX, duly tested on . The uncommented line\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation]{uathesis} \n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: %%############ Package Usage ############\n31: % These are the packages that I recommend\n32: \n33: \\usepackage{fancyhdr} % cosmetics for better headings\n34: %%----This is an attempt to fix the header issue pointed out by Grad College- comment this section out if its not needed.\n35: \\fancypagestyle{plain}{\n36: \\lhead{}\n37: \\chead{}\n38: \\fancyhead[R]{\\thepage}\n39: \\fancyhead[L]{}\n40: \\fancyhead[C]{}\n41: \\renewcommand{\\headrulewidth}{0pt}\n42: \\fancyfoot{}\n43: \\setlength{\\footskip}{4.35004pt}\n44: }\n45: \\setlength{\\headheight}{20.5pt}\n46: \\pagestyle{plain}\n47: \n48: \\fancypagestyle{fancy}{\n49: \\fancyhead[R]{\\thepage}\n50: \\fancyhead[L]{\\leftmark}\n51: \\fancyhead[C]{}\n52: \\renewcommand{\\headrulewidth}{0pt}\n53: \\fancyfoot{}\n54: }\n55: \n56: %% This is an attempt at juryrigging an appendix\n57: \\usepackage{pdfpages}\n58: \n59: \n60: \\usepackage{xcolor} %broader color range and color options, allows you to define your own colors as RBG vectors\n61: \n62: %%############ Packages for Tables and Graphics ############\n63: \\usepackage{graphicx} % allows insertion of pictures etc\n64: \\graphicspath{{images/}}\n65: %% Packages for Tables and Graphics:\n66: \\usepackage{placeins} % helps with floats and placing elements within sections\n67: \\usepackage{float} %trying to get my images where I want them\n68: \n69: % \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n70: % \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n71: \\usepackage{tabularx}\n72: \\usepackage{booktabs}\n73: \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n74: \\usepackage{colortbl} %tables with color celss\n75: \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n76: \\usepackage{longtable} %trying to allow tables to go onto next page\n77: \\usepackage{array} % trying to control table cell size\n78: \n79: \\usepackage{enumitem} % allows advanced controls of tables and example numbering\n80: \n81: \\usepackage{amsmath} %amsmath allows the use of \\eqref{}, \n82: % eqref will automatically put \n83: % brackets around your reference, \n84: % which is great for referencing gb4e examples. \n85: \n86: %%############ PDFLATEX FONT SUPPORT ############\n87: %%Uncomment this section if your compiler is PDFLATEX\n88: %%inputenc allows you to directly input utf-8 characters. This means you can just type Árüz instead of \\'Ar\\\"uz:\n89: \n90: % \\usepackage[utf8]{inputenc} \n91: \n92: %%############ XELATEX FONT SUPPORT ############\n93: %% Packages for Fonts. To add a new font and call it alongside the main font of the text, use the format '\\newfontfamily\\nameofcommand{Font Name}' as shown below.\n94: \n95: \\usepackage{times} %enable if you want to use a times font\n96: \\usepackage{fontspec}\n97: % \\setmainfont{Times} % Uncomment if you want to use Times\n98: \\newfontfamily\\ipa{Doulos SIL} %ALT FONT for IPA symbols\n99: \n100: %% ############ Packages for Citations: ############ \n101: %% LaTeX has two bibliography compiling systems, natbib and biber. Choose the one that you intend to use:\n102: \n103: %% 1. NATBIB:\n104: %% natbib is available on most systems, and is\n105: \t\t\t\t\t% terribly handy.\n106: \t\t\t\t\t% We are using biber for this template, but leaving natbib in as an option\n107: % if you want to use natbib instead of biber/biblatex, you need to \n108: % comment out the next package and the % addbibresource params\n109: % \\usepackage{natbib}\n110: % \\setcitestyle{semicolon,aysep={},yysep={,},notesep={:}} \n111: \n112: %% 2. BIBER:\n113: \\usepackage[backend=biber,\n114: style=unified, % we are using the LSA unified style sheet here\n115: maxcitenames=2,\n116: maxbibnames=99,\n117: natbib]{bib latex}\n118: \\addbibresource{bibliography.bib}\n119: \\renewcommand{\\bibname}{References}\n120: \n121: %% ###################### TODONOTES #######################\n122: %% Use one of the following two package invocations. The first is for the final version, the second for adding todonotes and comments:\n123: \n124: %% 1. DISABLE TODONOTES:\n125: %\\usepackage[disable]{todonotes}\n126: %% 2. ENABLE TODONOTES:\n127: \\usepackage[colorinlistoftodos,backgroundcolor= yellow, bordercolor= black]{todonotes}\n128: \\setuptodonotes{inline, prepend, caption={ToDo}}\n129: %% #######################################\n130: \t\n131: \n132: % If you are using hyper-ref (recommended), this command must go after all \n133: % other package inclusions (from the hyperref package documentation).\n134: % The purpose of hyperref is to make the PDF created extensively\n135: % cross-referenced.\n136: %allows to use references as links [hidelinks] makes sure there are no borders around the link, gives us \\autoref\n137: \\usepackage[hidelinks]{hyperref}\n138: \n139: %% ########## Linguistics Packages ############\n140: \\usepackage{tikz} %graph solution that should help me get a nice vowel chart\n141: \\usepackage{tipa} %enables an IPA environment\n142: \\usepackage{qtree} %allows simple trees\n143: \\usepackage[linguistics]{forest} %allows more complex trees\n144: \\usepackage{gb4e} %manages example numbering, has to be last package in pre-amble, will break document otherwise\n145: \n146: %% ########## Set up values for Title Page ############\n147: \n148: \\completetitle{Title}\n149: \\fullname{}\t\t\t% Grad college wants your full name here.\n150: \\degreename{Doctor of Philosophy}\t% Title of your degree.\n151: \\degreemajor{Linguistics} % Degree major\n152: \n153: \\counterwithout{footnote}{chapter} %disable this if you want your footnotes to reset their counter for each chapter\n154: \n155: % the inlinetitle below will be used on the graduate college signature page if you uncomment it. \n156: % This is useful if your completetitle uses a linebreak or other command that would break an inline use of that title. \n157: % If you leave this commented it will do nothing. Uncomment and give it a value to activate. The change will be visible on page 2.\n158: \n159: %\\inlinetitle{}\n160: \n161: \\begin{document}\n162: \n163: \\include{custom-commands.tex} % we are hosting all the custom commands we are writing in a seperate file\n164: \n165: % tocdepth defines how many layers of sections/subsections are displayed in your table of content. The hierarchy works like this:\n166: % Chapters (1)> Sections (2) > Subsections (3) > SubSubsections (4) > Paragraphs (5)\n167: % Default = 4\n168: %\\setcounter{tocdepth}{5} \n169: % secnumdepth does the same work, except it numbers your sections. Chapters are automatically numbered, so setting this to 4 will give you numbered paragraphs. Default = 3\n170: %\\setcounter{secnumdepth}{4}\n171: \n172: \n173: \n174: % Set up the title page\n175: \\maketitlepage\n176: {DEPARTMENT OF LINGUISTICS}\t% Title of your department.\n177: {2019}\t\t\t\t\t\t\t\n178: \n179: % Insert the approval form. Note that for electronic submission\n180: % of your Ph. D. dissertation, you must bring *two* copies of the\n181: % approval page to your final defense. These must be signed by\n182: % the committee. Make two photocopies: one for the department\n183: % and the other for your records. Then, bring the two signed \n184: % originals to the graduate college when you submit the \n185: % final version of the dissertation to the University of Arizona.\n186: % if you want to change the number of lines displayed, you need to do this in the uathesis.cls class, check the \\approval command\n187: \\approval\n188: {}\t\t% Defense Date\t\n189: {}\t% Dissertation Director\n190: {}\t% 1st committee member\n191: {}\t\t% 2nd committee member\n192: {}\t\t% 3rd committee member\n193: {}\t\t% 4th committee member\n194: {}\t\t% 5th committee member\n195: {}\t\t% 6th committee member\n196: \n197: % if you want to load your approval with a UA watermark, use this command, which uses the same syntax as the one above:\n198: % \\approvalWithWM{}{}{}{}{}{}{}{}\n199: \n200: % Include the ``Statement by Author'' for Dissertations\n201: \\statementbyauthor\n202: % If this is a Thesis, use the following form, with your thesis director's\n203: % name and title in the square brackets like so (you should also omit the \n204: % approval form insertion above):\n205: %\\statementbyauthor[Jane M. Doe\\\\Professor of Chemistry]\n206: \n207: % Include the ``Acknowledgements''\n208: \\incacknowledgements{acknowledgements}\n209: \n210: % Include the ``Dedication''\n211: \\incdedication{dedication}\n212: \n213: % Create a ``Table of Contents''\n214: \\tableofcontents\n215: \n216: % Create a ``List of Figures''\n217: \\listoffigures\n218: \n219: % Create a ``List of Tables''\n220: \\listoftables\n221: \n222: % Include the ``Abstract''\n223: \\incabstract{abstract}\n224: \n225: % Include the various chapters\n226: \\include{introduction}\n227: \\include{chapter2}\n228: \\include{chapter3}\n229: \n230: \n231: % Include the various appendices\n232: \\appendix\n233: \\include{appendix}\n234: \n235: \n236: % Switch the spacing to single-spaced for the references\n237: \\renewcommand{\\baselinestretch}{1}\t\t% changing the value\n238: \\small\\normalsize\t\t\t\t\t\t% switch size to make the value take\n239: \n240: % Use the below if using natbib\n241: % this is where your natbib stylesheet is referenced\n242: %\\bibliographystyle{sp-lsa.bst}\t% S\\&P bibliography style\n243: % S\\&P, an LSA publication, meets the LSA guidelines. \n244: % if you wish to use the UA citation style instead, call \"uabibnat.bst\" in the \\bibliographystyle\n245: %\\bibliography{bibliography}\n246: \n247: %% use this for biblatex/biber\n248: %% 'title = ' changes the heading of the bibliography section,\n249: %% and 'heading = ' ensures it is listed in the ToC \n250: \\printbibliography[title = {REFERENCES}, heading=bibintoc]\n251: \n252: \\end{document}\n253: \n```\n\nCompile log (tail):\n```\ner3.tex.\n\\openout2 = `appendix.aux'.\n\nNo file appendix.tex.\n\nLaTeX Warning: Empty bibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 397B19BD922B766B4A438D2343CA47A8;329.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44118 strings out of 473832\n 979571 string characters out of 5729480\n 1865388 words of memory out of 5000000\n 66581 multiletter control sequences out of 15000+600000\n 563355 words of font info for 60 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,11n,121p,1711b,850s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (9 pages, 25556 bytes).\n```", "repo_url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics"} {"bib": false, "lane": "project", "file_edits": [{"file": "chapter2.tex", "search": "%!TEX root = ../dissertation.tex\n\n\\noindent Add acknowledgements here. \n\\todonum{Complete this text.}\n\\chapter[Chapter 2]{TitleofChapter}", "replace": "\\chapter[Chapter 2]{TitleofChapter}", "type": "real"}, {"file": "chapter2.tex", "search": " \\label{fig:mylabel}\n\\end{figure}\n\\todoNW{Example Todo Note from NW}\n\nAnd here is a table which we position at the bottom:", "replace": " \\label{fig:mylabel}\n\\end{figure}\n\nAnd here is a table which we position at the bottom:", "type": "real"}], "reported_file": "main.tex", "fix_files": ["chapter2.tex"], "single_shot_visible": true, "error_lines": [{"line": 99, "text": "Package fontspec Error:", "file": "main.tex", "fileLabel": null}], "log_tail": "ibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44905 strings out of 473832\n 994643 string characters out of 5729480\n 1866388 words of memory out of 5000000\n 67338 multiletter control sequences out of 15000+600000\n 564987 words of font info for 71 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,12n,121p,1711b,1414s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (14 pages, 55640 bytes).\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 99: Package fontspec Error:\n\nProject files:\n- .github/workflows/makefile.yml\n- LICENSE\n- Makefile\n- README.md\n- abstract.tex\n- acknowledgements.tex\n- appendix.tex\n- bibliography.bib\n- cclicenses.sty\n- chapter2.tex\n- chapter3.tex\n- custom-commands.tex\n- dedication.tex\n- introduction.tex\n- main.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nOther project files (edit them with ):\n\n`bibliography.bib` (full file, line-numbered):\n```\n1: @ARTICLE{Chimsky2022,\n2: author = {Chimsky, Nim},\n3: title = \"{The Illusion of Language}\",\n4: journal = {Natural Language and Linguistic Theory},\n5: keywords = {Linguistics},\n6: year = 2022,\n7: volume = 25,\n8: number = 1,\n9: }\n10: \n11: @book{chomsky-why-2016,\n12: \ttitle = {Why Only Us: Language and Evolution},\n13: \tisbn = {978-0-262-33335-1},\n14: \turl = {https://direct.mit.edu/books/book/4464/Why-Only-UsLanguage-and-Evolution},\n15: \tshorttitle = {Why Only Us},\n16: \tpublisher = {The {MIT} Press},\n17: \tauthor = {Chomsky, Noam and Berwick, Robert C.},\n18: \turldate = {2022-05-02},\n19: \tyear = {2016},\n20: \tlangid = {english},\n21: \tdoi = {10.7551/mitpress/10684.001.0001},\n22: }\n23: \n```\n\n`uathesis.cls` (head and lines matching the log, line-numbered):\n```\n...\n28: \\NeedsTeXFormat{LaTeX2e}\n29: \\ProvidesClass{uathesis}[2005/08/09 University of Arizona Thesis Class]\n30: \n31: \\RequirePackage{ifthen}\n32: \\RequirePackage{tikz} % we need this for the watermark option\n33: \\RequirePackage{cclicenses} % This is used to generate the Creative Commons\n...\n37: \n38: \n...\n42: \n...\n44: \\newcommand{\\ThesisType}{\\emph{(please specify thesis, dissertation, or document as an option in the uathesis documentclass statement at the top of your file)}}\n45: \n46: \\DeclareOption{thesis}{%\n47: \t\\renewcommand{\\ThesisType}{Thesis}\n48: }\n49: \n50: \\DeclareOption{dissertation}{%\n51: \t\\renewcommand{\\ThesisType}{Dissertation}\n52: }\n53: \n54: \\DeclareOption{document}{%\n55: \t\\renewcommand{\\ThesisType}{Document}\n56: }\n57: \n58: \\newboolean{Copyright}\n59: \\setboolean{Copyright}{false}\n60: \\DeclareOption{copyright}{%\n61: \t\\setboolean{Copyright}{true}\n62: }\n63: \n...\n66: \\newboolean{CCBY}\n```\n\n`custom-commands.tex` (full file, line-numbered):\n```\n1: % this file can host your custom commands so they do not clutter your mainfile\n2: \n3: % for documentation on LaTeX commands see: https://www.overleaf.com/learn/latex/Commands#Simple_commands\n4: \n5: \n6: %%% The following allows dagger footnote on chapter titles\n7: %%% with no number. Useful for designating previously \n8: %%% published work.\n9: \\newcounter{daggerfootnote}\n10: \\newcommand*{\\daggerfootnote}[1]{%\n11: \\setcounter{daggerfootnote}{\\value{footnote}}%\n12: \\renewcommand*{\\thefootnote}{\\fnsymbol{footnote}}%\n13: \\footnote[2]{#1}%\n14: \\setcounter{footnote}{\\value{daggerfootnote}}%\n15: \\renewcommand*{\\thefootnote}{\\arabic{footnote}}%\n16: }\n17: \n18: \n19: %% Custom ToDo notes\n20: %% Useage: \\done{completed todo text, prints 'done'}, \\nw{todos from nw}, \\todocite{prints the work cite}\n21: %% todo notes for completed todos:\n22: \\newcommand{\\done}[1]{\\todo[color=green!40, prepend, caption={Done}]{#1}}\n23: %% todo notes by self:\n24: \\newcounter{todocounter}\n25: \\newcommand{\\todonum}[2][]\n26: {\\stepcounter{todocounter}\\todo[#1]\n27: {\\thetodocounter: #2}}\n28: %% todo notes by NW\n29: \\newcommand{\\todoNW}[2][]\n30: {\\stepcounter{todocounter}\\todo[color=orange!40, author=NW, noprepend]{\\thetodocounter: #2}} \n31: \n32: %% todo notes for adding citation\n33: \\newcommand{\\todocite}[2][]\n34: {\\stepcounter{todocounter}\\todo[inlinewidth=2.2cm, noinlinepar, color=blue!40, prepend, caption={CITE}]\n35: {\\thetodocounter: #2}} \n36: \n37: %% todo notes for reverse outline\n38: \\newcommand{\\reverseOutline}[2][]\n39: {\\stepcounter{todocounter}\\todo[color=grey!40, noprepend]{\\thetodocounter: #2}}\n40: \n41: \n```\n\n`introduction.tex` (full file, line-numbered):\n```\n1: \\chapter[Introduction]% the [square brackets] define the name of this in the TOC\n2: {Introduction\\daggerfootnote{This chapter has been published previously as \\citet{Chimsky2022}.}}\\label{chap:Intro} %we define a label for this chapter\n3: \n4: \n5: \n6: Here are different cite commands as demonstrated in a \\emph{gb4e} list:\n7: \n8: \\begin{exe}\n9: \\ex \\textbackslash cite : \\cite{chomsky-why-2016}\n10: \\ex now here is a sublist \\begin{xlista}\n11: \\ex \\textbackslash citep : \\citep{chomsky-why-2016}\n12: \\ex \\textbackslash citet{} : \\citet{chomsky-why-2016}\n13: \\end{xlista}\n14: \\ex\\label{item} now there is another numbered item\n15: \\end{exe}\n16: And now I reference that item with \\textbackslash eqref: \\eqref{item}\n17: %\\begin{figure}\n18: %\\centering\n19: %\\includegraphics[angle=0,width=\\columnwidth]{fig1.pdf}\n20: %\\caption[]{}\n21: %\\label{fig1}\n22: %\\end{figure}\n```\n\n`chapter2.tex` (full file, line-numbered):\n```\n1: %!TEX root = ../dissertation.tex\n2: \n3: \\noindent Add acknowledgements here. \n4: \\todonum{Complete this text.}\n5: \\chapter[Chapter 2]{TitleofChapter}\n6: \n7: Let's make a figure out of a tree and position it right under our text:\n8: \n9: \\begin{figure}[h] %to understand figure positioning, please refer to: \n10: % https://www.overleaf.com/learn/latex/Inserting_Images\n11: \\centering\n12: \\begin{forest}\n13: [NP [DP] [N] ]\n14: \\end{forest}\n15: \\caption[A very special figure]{Caption}\n16: \\label{fig:mylabel}\n17: \\end{figure}\n18: \\todoNW{Example Todo Note from NW}\n19: \n20: And here is a table which we position at the bottom:\n21: %%%%%%%%% some custom definitions first\n22: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} %here we define a custom column\n23: % type, called 's', this will have the color as defined via HTML and a width of 3cm\n24: \\arrayrulecolor[HTML]{DB5800}\n25: \\colorlet{mycolor}{red!30!blue!50} % here we define our own color, using red \n26: % at 30% opacity and blue at 50%\n27: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n28: \\begin{table}[b!]\n29: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n30: \\hline\n31: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n32: \\hline\n33: Country Name or Area Name \\cellcolor{mycolor}\n34: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n35: \\hline\n36: Afghanistan & AF &AFG \\\\\n37: \\rowcolor{gray}\n38: Aland Islands & AX & ALA \\\\\n39: Albania &AL & ALB \\\\\n40: Algeria &DZ & DZA \\\\\n41: American Samoa & AS & ASM \\\\\n42: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n43: Angola & AO & AGO \\\\\n44: \\hline\n45: \\end{tabular}\n46: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n47: \\end{table}\n48: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Sample Dissertation, Thesis, or Document %\n2: % for use with the %\n3: % University of Arizona Thesis Class, %\n4: % uathesis.cls %\n5: %------------------------------------------%\n6: \n7: % This is an adapted version of J.J. Charfman's template which can be\n8: % found here: https://da.overleaf.com/latex/templates/university-of-arizona-astronomy-thesis-template/tsfqcgnfmjcx\n9: % This template is adapted for linguistics, with support for XeLaTeX, duly tested on . The uncommented line\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation]{uathesis} \n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: %%############ Package Usage ############\n31: % These are the packages that I recommend\n32: \n33: \\usepackage{fancyhdr} % cosmetics for better headings\n34: %%----This is an attempt to fix the header issue pointed out by Grad College- comment this section out if its not needed.\n35: \\fancypagestyle{plain}{\n36: \\lhead{}\n37: \\chead{}\n38: \\fancyhead[R]{\\thepage}\n39: \\fancyhead[L]{}\n40: \\fancyhead[C]{}\n41: \\renewcommand{\\headrulewidth}{0pt}\n42: \\fancyfoot{}\n43: \\setlength{\\footskip}{4.35004pt}\n44: }\n45: \\setlength{\\headheight}{20.5pt}\n46: \\pagestyle{plain}\n47: \n48: \\fancypagestyle{fancy}{\n49: \\fancyhead[R]{\\thepage}\n50: \\fancyhead[L]{\\leftmark}\n51: \\fancyhead[C]{}\n52: \\renewcommand{\\headrulewidth}{0pt}\n53: \\fancyfoot{}\n54: }\n55: \n56: %% This is an attempt at juryrigging an appendix\n57: \\usepackage{pdfpages}\n58: \n59: \n60: \\usepackage{xcolor} %broader color range and color options, allows you to define your own colors as RBG vectors\n61: \n62: %%############ Packages for Tables and Graphics ############\n63: \\usepackage{graphicx} % allows insertion of pictures etc\n64: \\graphicspath{{images/}}\n65: %% Packages for Tables and Graphics:\n66: \\usepackage{placeins} % helps with floats and placing elements within sections\n67: \\usepackage{float} %trying to get my images where I want them\n68: \n69: % \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n70: % \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n71: \\usepackage{tabularx}\n72: \\usepackage{booktabs}\n73: \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n74: \\usepackage{colortbl} %tables with color celss\n75: \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n76: \\usepackage{longtable} %trying to allow tables to go onto next page\n77: \\usepackage{array} % trying to control table cell size\n78: \n79: \\usepackage{enumitem} % allows advanced controls of tables and example numbering\n80: \n81: \\usepackage{amsmath} %amsmath allows the use of \\eqref{}, \n82: % eqref will automatically put \n83: % brackets around your reference, \n84: % which is great for referencing gb4e examples. \n85: \n86: %%############ PDFLATEX FONT SUPPORT ############\n87: %%Uncomment this section if your compiler is PDFLATEX\n88: %%inputenc allows you to directly input utf-8 characters. This means you can just type Árüz instead of \\'Ar\\\"uz:\n89: \n90: % \\usepackage[utf8]{inputenc} \n91: \n92: %%############ XELATEX FONT SUPPORT ############\n93: %% Packages for Fonts. To add a new font and call it alongside the main font of the text, use the format '\\newfontfamily\\nameofcommand{Font Name}' as shown below.\n94: \n95: \\usepackage{times} %enable if you want to use a times font\n96: \\usepackage{fontspec}\n97: % \\setmainfont{Times} % Uncomment if you want to use Times\n98: \\newfontfamily\\ipa{Doulos SIL} %ALT FONT for IPA symbols\n99: \n100: %% ############ Packages for Citations: ############ \n101: %% LaTeX has two bibliography compiling systems, natbib and biber. Choose the one that you intend to use:\n102: \n103: %% 1. NATBIB:\n104: %% natbib is available on most systems, and is\n105: \t\t\t\t\t% terribly handy.\n106: \t\t\t\t\t% We are using biber for this template, but leaving natbib in as an option\n107: % if you want to use natbib instead of biber/biblatex, you need to \n108: % comment out the next package and the % addbibresource params\n109: % \\usepackage{natbib}\n110: % \\setcitestyle{semicolon,aysep={},yysep={,},notesep={:}} \n111: \n112: %% 2. BIBER:\n113: \\usepackage[backend=biber,\n114: style=unified, % we are using the LSA unified style sheet here\n115: maxcitenames=2,\n116: maxbibnames=99,\n117: natbib]{bib latex}\n118: \\addbibresource{bibliography.bib}\n119: \\renewcommand{\\bibname}{References}\n120: \n121: %% ###################### TODONOTES #######################\n122: %% Use one of the following two package invocations. The first is for the final version, the second for adding todonotes and comments:\n123: \n124: %% 1. DISABLE TODONOTES:\n125: %\\usepackage[disable]{todonotes}\n126: %% 2. ENABLE TODONOTES:\n127: \\usepackage[colorinlistoftodos,backgroundcolor= yellow, bordercolor= black]{todonotes}\n128: \\setuptodonotes{inline, prepend, caption={ToDo}}\n129: %% #######################################\n130: \t\n131: \n132: % If you are using hyper-ref (recommended), this command must go after all \n133: % other package inclusions (from the hyperref package documentation).\n134: % The purpose of hyperref is to make the PDF created extensively\n135: % cross-referenced.\n136: %allows to use references as links [hidelinks] makes sure there are no borders around the link, gives us \\autoref\n137: \\usepackage[hidelinks]{hyperref}\n138: \n139: %% ########## Linguistics Packages ############\n140: \\usepackage{tikz} %graph solution that should help me get a nice vowel chart\n141: \\usepackage{tipa} %enables an IPA environment\n142: \\usepackage{qtree} %allows simple trees\n143: \\usepackage[linguistics]{forest} %allows more complex trees\n144: \\usepackage{gb4e} %manages example numbering, has to be last package in pre-amble, will break document otherwise\n145: \n146: %% ########## Set up values for Title Page ############\n147: \n148: \\completetitle{Title}\n149: \\fullname{}\t\t\t% Grad college wants your full name here.\n150: \\degreename{Doctor of Philosophy}\t% Title of your degree.\n151: \\degreemajor{Linguistics} % Degree major\n152: \n153: \\counterwithout{footnote}{chapter} %disable this if you want your footnotes to reset their counter for each chapter\n154: \n155: % the inlinetitle below will be used on the graduate college signature page if you uncomment it. \n156: % This is useful if your completetitle uses a linebreak or other command that would break an inline use of that title. \n157: % If you leave this commented it will do nothing. Uncomment and give it a value to activate. The change will be visible on page 2.\n158: \n159: %\\inlinetitle{}\n160: \n161: \\begin{document}\n162: \n163: \\include{custom-commands.tex} % we are hosting all the custom commands we are writing in a seperate file\n164: \n165: % tocdepth defines how many layers of sections/subsections are displayed in your table of content. The hierarchy works like this:\n166: % Chapters (1)> Sections (2) > Subsections (3) > SubSubsections (4) > Paragraphs (5)\n167: % Default = 4\n168: %\\setcounter{tocdepth}{5} \n169: % secnumdepth does the same work, except it numbers your sections. Chapters are automatically numbered, so setting this to 4 will give you numbered paragraphs. Default = 3\n170: %\\setcounter{secnumdepth}{4}\n171: \n172: \n173: \n174: % Set up the title page\n175: \\maketitlepage\n176: {DEPARTMENT OF LINGUISTICS}\t% Title of your department.\n177: {2019}\t\t\t\t\t\t\t\n178: \n179: % Insert the approval form. Note that for electronic submission\n180: % of your Ph. D. dissertation, you must bring *two* copies of the\n181: % approval page to your final defense. These must be signed by\n182: % the committee. Make two photocopies: one for the department\n183: % and the other for your records. Then, bring the two signed \n184: % originals to the graduate college when you submit the \n185: % final version of the dissertation to the University of Arizona.\n186: % if you want to change the number of lines displayed, you need to do this in the uathesis.cls class, check the \\approval command\n187: \\approval\n188: {}\t\t% Defense Date\t\n189: {}\t% Dissertation Director\n190: {}\t% 1st committee member\n191: {}\t\t% 2nd committee member\n192: {}\t\t% 3rd committee member\n193: {}\t\t% 4th committee member\n194: {}\t\t% 5th committee member\n195: {}\t\t% 6th committee member\n196: \n197: % if you want to load your approval with a UA watermark, use this command, which uses the same syntax as the one above:\n198: % \\approvalWithWM{}{}{}{}{}{}{}{}\n199: \n200: % Include the ``Statement by Author'' for Dissertations\n201: \\statementbyauthor\n202: % If this is a Thesis, use the following form, with your thesis director's\n203: % name and title in the square brackets like so (you should also omit the \n204: % approval form insertion above):\n205: %\\statementbyauthor[Jane M. Doe\\\\Professor of Chemistry]\n206: \n207: % Include the ``Acknowledgements''\n208: \\incacknowledgements{acknowledgements}\n209: \n210: % Include the ``Dedication''\n211: \\incdedication{dedication}\n212: \n213: % Create a ``Table of Contents''\n214: \\tableofcontents\n215: \n216: % Create a ``List of Figures''\n217: \\listoffigures\n218: \n219: % Create a ``List of Tables''\n220: \\listoftables\n221: \n222: % Include the ``Abstract''\n223: \\incabstract{abstract}\n224: \n225: % Include the various chapters\n226: \\include{introduction}\n227: \\include{chapter2}\n228: \\include{chapter3}\n229: \n230: \n231: % Include the various appendices\n232: \\appendix\n233: \\include{appendix}\n234: \n235: \n236: % Switch the spacing to single-spaced for the references\n237: \\renewcommand{\\baselinestretch}{1}\t\t% changing the value\n238: \\small\\normalsize\t\t\t\t\t\t% switch size to make the value take\n239: \n240: % Use the below if using natbib\n241: % this is where your natbib stylesheet is referenced\n242: %\\bibliographystyle{sp-lsa.bst}\t% S\\&P bibliography style\n243: % S\\&P, an LSA publication, meets the LSA guidelines. \n244: % if you wish to use the UA citation style instead, call \"uabibnat.bst\" in the \\bibliographystyle\n245: %\\bibliography{bibliography}\n246: \n247: %% use this for biblatex/biber\n248: %% 'title = ' changes the heading of the bibliography section,\n249: %% and 'heading = ' ensures it is listed in the ToC \n250: \\printbibliography[title = {REFERENCES}, heading=bibintoc]\n251: \n252: \\end{document}\n253: \n```\n\nCompile log (tail):\n```\nibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44905 strings out of 473832\n 994643 string characters out of 5729480\n 1866388 words of memory out of 5000000\n 67338 multiletter control sequences out of 15000+600000\n 564987 words of font info for 71 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,12n,121p,1711b,1414s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (14 pages, 55640 bytes).\n```", "target": "\n<<<<<<< SEARCH\n \\label{fig:mylabel}\n\\end{figure}\n\nAnd here is a table which we position at the bottom:\n=======\n \\label{fig:mylabel}\n\\end{figure}\n\\todoNW{Example Todo Note from NW}\n\nAnd here is a table which we position at the bottom:\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\chapter[Chapter 2]{TitleofChapter}\n=======\n%!TEX root = ../dissertation.tex\n\n\\noindent Add acknowledgements here. \n\\todonum{Complete this text.}\n\\chapter[Chapter 2]{TitleofChapter}\n>>>>>>> REPLACE\n", "id": "github2_remo-help__UofA-dissertation-template-for-linguistics__8afb9d5", "doc": "github_multi2/remo-help__UofA-dissertation-template-for-linguistics__8afb9d5", "mutation": "real", "source": "github", "repo": "remo-help/UofA-dissertation-template-for-linguistics", "sha": "8afb9d52de948a9855558a9835528b610538dbbb", "parent_sha": "6e39351d3dee21d38f6488328a3e468100872d71", "license": "CC0-1.0", "url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics/commit/8afb9d52de948a9855558a9835528b610538dbbb", "changed_files": ["chapter2.tex"], "original_root": "dissertation.tex", "n_files": 12, "engine": "xelatex", "error_category": "Package fontspec Error:", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 99: Package fontspec Error:\n\nProject files:\n- .github/workflows/makefile.yml\n- LICENSE\n- Makefile\n- README.md\n- abstract.tex\n- acknowledgements.tex\n- appendix.tex\n- bibliography.bib\n- cclicenses.sty\n- chapter2.tex\n- chapter3.tex\n- custom-commands.tex\n- dedication.tex\n- introduction.tex\n- main.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Sample Dissertation, Thesis, or Document %\n2: % for use with the %\n3: % University of Arizona Thesis Class, %\n4: % uathesis.cls %\n5: %------------------------------------------%\n6: \n7: % This is an adapted version of J.J. Charfman's template which can be\n8: % found here: https://da.overleaf.com/latex/templates/university-of-arizona-astronomy-thesis-template/tsfqcgnfmjcx\n9: % This template is adapted for linguistics, with support for XeLaTeX, duly tested on . The uncommented line\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation]{uathesis} \n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: %%############ Package Usage ############\n31: % These are the packages that I recommend\n32: \n33: \\usepackage{fancyhdr} % cosmetics for better headings\n34: %%----This is an attempt to fix the header issue pointed out by Grad College- comment this section out if its not needed.\n35: \\fancypagestyle{plain}{\n36: \\lhead{}\n37: \\chead{}\n38: \\fancyhead[R]{\\thepage}\n39: \\fancyhead[L]{}\n40: \\fancyhead[C]{}\n41: \\renewcommand{\\headrulewidth}{0pt}\n42: \\fancyfoot{}\n43: \\setlength{\\footskip}{4.35004pt}\n44: }\n45: \\setlength{\\headheight}{20.5pt}\n46: \\pagestyle{plain}\n47: \n48: \\fancypagestyle{fancy}{\n49: \\fancyhead[R]{\\thepage}\n50: \\fancyhead[L]{\\leftmark}\n51: \\fancyhead[C]{}\n52: \\renewcommand{\\headrulewidth}{0pt}\n53: \\fancyfoot{}\n54: }\n55: \n56: %% This is an attempt at juryrigging an appendix\n57: \\usepackage{pdfpages}\n58: \n59: \n60: \\usepackage{xcolor} %broader color range and color options, allows you to define your own colors as RBG vectors\n61: \n62: %%############ Packages for Tables and Graphics ############\n63: \\usepackage{graphicx} % allows insertion of pictures etc\n64: \\graphicspath{{images/}}\n65: %% Packages for Tables and Graphics:\n66: \\usepackage{placeins} % helps with floats and placing elements within sections\n67: \\usepackage{float} %trying to get my images where I want them\n68: \n69: % \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n70: % \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n71: \\usepackage{tabularx}\n72: \\usepackage{booktabs}\n73: \\usepackage{lscape} % Used for making fitting large tables in by putting them landscape\n74: \\usepackage{colortbl} %tables with color celss\n75: \\usepackage[tableposition=t]{caption} % (makes table captions normal size when font set smaller)\n76: \\usepackage{longtable} %trying to allow tables to go onto next page\n77: \\usepackage{array} % trying to control table cell size\n78: \n79: \\usepackage{enumitem} % allows advanced controls of tables and example numbering\n80: \n81: \\usepackage{amsmath} %amsmath allows the use of \\eqref{}, \n82: % eqref will automatically put \n83: % brackets around your reference, \n84: % which is great for referencing gb4e examples. \n85: \n86: %%############ PDFLATEX FONT SUPPORT ############\n87: %%Uncomment this section if your compiler is PDFLATEX\n88: %%inputenc allows you to directly input utf-8 characters. This means you can just type Árüz instead of \\'Ar\\\"uz:\n89: \n90: % \\usepackage[utf8]{inputenc} \n91: \n92: %%############ XELATEX FONT SUPPORT ############\n93: %% Packages for Fonts. To add a new font and call it alongside the main font of the text, use the format '\\newfontfamily\\nameofcommand{Font Name}' as shown below.\n94: \n95: \\usepackage{times} %enable if you want to use a times font\n96: \\usepackage{fontspec}\n97: % \\setmainfont{Times} % Uncomment if you want to use Times\n98: \\newfontfamily\\ipa{Doulos SIL} %ALT FONT for IPA symbols\n99: \n100: %% ############ Packages for Citations: ############ \n101: %% LaTeX has two bibliography compiling systems, natbib and biber. Choose the one that you intend to use:\n102: \n103: %% 1. NATBIB:\n104: %% natbib is available on most systems, and is\n105: \t\t\t\t\t% terribly handy.\n106: \t\t\t\t\t% We are using biber for this template, but leaving natbib in as an option\n107: % if you want to use natbib instead of biber/biblatex, you need to \n108: % comment out the next package and the % addbibresource params\n109: % \\usepackage{natbib}\n110: % \\setcitestyle{semicolon,aysep={},yysep={,},notesep={:}} \n111: \n112: %% 2. BIBER:\n113: \\usepackage[backend=biber,\n114: style=unified, % we are using the LSA unified style sheet here\n115: maxcitenames=2,\n116: maxbibnames=99,\n117: natbib]{bib latex}\n118: \\addbibresource{bibliography.bib}\n119: \\renewcommand{\\bibname}{References}\n120: \n121: %% ###################### TODONOTES #######################\n122: %% Use one of the following two package invocations. The first is for the final version, the second for adding todonotes and comments:\n123: \n124: %% 1. DISABLE TODONOTES:\n125: %\\usepackage[disable]{todonotes}\n126: %% 2. ENABLE TODONOTES:\n127: \\usepackage[colorinlistoftodos,backgroundcolor= yellow, bordercolor= black]{todonotes}\n128: \\setuptodonotes{inline, prepend, caption={ToDo}}\n129: %% #######################################\n130: \t\n131: \n132: % If you are using hyper-ref (recommended), this command must go after all \n133: % other package inclusions (from the hyperref package documentation).\n134: % The purpose of hyperref is to make the PDF created extensively\n135: % cross-referenced.\n136: %allows to use references as links [hidelinks] makes sure there are no borders around the link, gives us \\autoref\n137: \\usepackage[hidelinks]{hyperref}\n138: \n139: %% ########## Linguistics Packages ############\n140: \\usepackage{tikz} %graph solution that should help me get a nice vowel chart\n141: \\usepackage{tipa} %enables an IPA environment\n142: \\usepackage{qtree} %allows simple trees\n143: \\usepackage[linguistics]{forest} %allows more complex trees\n144: \\usepackage{gb4e} %manages example numbering, has to be last package in pre-amble, will break document otherwise\n145: \n146: %% ########## Set up values for Title Page ############\n147: \n148: \\completetitle{Title}\n149: \\fullname{}\t\t\t% Grad college wants your full name here.\n150: \\degreename{Doctor of Philosophy}\t% Title of your degree.\n151: \\degreemajor{Linguistics} % Degree major\n152: \n153: \\counterwithout{footnote}{chapter} %disable this if you want your footnotes to reset their counter for each chapter\n154: \n155: % the inlinetitle below will be used on the graduate college signature page if you uncomment it. \n156: % This is useful if your completetitle uses a linebreak or other command that would break an inline use of that title. \n157: % If you leave this commented it will do nothing. Uncomment and give it a value to activate. The change will be visible on page 2.\n158: \n159: %\\inlinetitle{}\n160: \n161: \\begin{document}\n162: \n163: \\include{custom-commands.tex} % we are hosting all the custom commands we are writing in a seperate file\n164: \n165: % tocdepth defines how many layers of sections/subsections are displayed in your table of content. The hierarchy works like this:\n166: % Chapters (1)> Sections (2) > Subsections (3) > SubSubsections (4) > Paragraphs (5)\n167: % Default = 4\n168: %\\setcounter{tocdepth}{5} \n169: % secnumdepth does the same work, except it numbers your sections. Chapters are automatically numbered, so setting this to 4 will give you numbered paragraphs. Default = 3\n170: %\\setcounter{secnumdepth}{4}\n171: \n172: \n173: \n174: % Set up the title page\n175: \\maketitlepage\n176: {DEPARTMENT OF LINGUISTICS}\t% Title of your department.\n177: {2019}\t\t\t\t\t\t\t\n178: \n179: % Insert the approval form. Note that for electronic submission\n180: % of your Ph. D. dissertation, you must bring *two* copies of the\n181: % approval page to your final defense. These must be signed by\n182: % the committee. Make two photocopies: one for the department\n183: % and the other for your records. Then, bring the two signed \n184: % originals to the graduate college when you submit the \n185: % final version of the dissertation to the University of Arizona.\n186: % if you want to change the number of lines displayed, you need to do this in the uathesis.cls class, check the \\approval command\n187: \\approval\n188: {}\t\t% Defense Date\t\n189: {}\t% Dissertation Director\n190: {}\t% 1st committee member\n191: {}\t\t% 2nd committee member\n192: {}\t\t% 3rd committee member\n193: {}\t\t% 4th committee member\n194: {}\t\t% 5th committee member\n195: {}\t\t% 6th committee member\n196: \n197: % if you want to load your approval with a UA watermark, use this command, which uses the same syntax as the one above:\n198: % \\approvalWithWM{}{}{}{}{}{}{}{}\n199: \n200: % Include the ``Statement by Author'' for Dissertations\n201: \\statementbyauthor\n202: % If this is a Thesis, use the following form, with your thesis director's\n203: % name and title in the square brackets like so (you should also omit the \n204: % approval form insertion above):\n205: %\\statementbyauthor[Jane M. Doe\\\\Professor of Chemistry]\n206: \n207: % Include the ``Acknowledgements''\n208: \\incacknowledgements{acknowledgements}\n209: \n210: % Include the ``Dedication''\n211: \\incdedication{dedication}\n212: \n213: % Create a ``Table of Contents''\n214: \\tableofcontents\n215: \n216: % Create a ``List of Figures''\n217: \\listoffigures\n218: \n219: % Create a ``List of Tables''\n220: \\listoftables\n221: \n222: % Include the ``Abstract''\n223: \\incabstract{abstract}\n224: \n225: % Include the various chapters\n226: \\include{introduction}\n227: \\include{chapter2}\n228: \\include{chapter3}\n229: \n230: \n231: % Include the various appendices\n232: \\appendix\n233: \\include{appendix}\n234: \n235: \n236: % Switch the spacing to single-spaced for the references\n237: \\renewcommand{\\baselinestretch}{1}\t\t% changing the value\n238: \\small\\normalsize\t\t\t\t\t\t% switch size to make the value take\n239: \n240: % Use the below if using natbib\n241: % this is where your natbib stylesheet is referenced\n242: %\\bibliographystyle{sp-lsa.bst}\t% S\\&P bibliography style\n243: % S\\&P, an LSA publication, meets the LSA guidelines. \n244: % if you wish to use the UA citation style instead, call \"uabibnat.bst\" in the \\bibliographystyle\n245: %\\bibliography{bibliography}\n246: \n247: %% use this for biblatex/biber\n248: %% 'title = ' changes the heading of the bibliography section,\n249: %% and 'heading = ' ensures it is listed in the ToC \n250: \\printbibliography[title = {REFERENCES}, heading=bibintoc]\n251: \n252: \\end{document}\n253: \n```\n\nCompile log (tail):\n```\nibliography on input line 250.\n\n(./main.aux (./custom-commands.aux) (./introduction.aux) (./chapter2.aux)\n(./chapter3.aux) (./appendix.aux))\n ***********\nLaTeX2e <2024-11-01> patch level 2\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Font Warning: Some font shapes were not available, defaults substituted.\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 09D6217895281D2F0BDF020B97EE64B6;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 44905 strings out of 473832\n 994643 string characters out of 5729480\n 1866388 words of memory out of 5000000\n 67338 multiletter control sequences out of 15000+600000\n 564987 words of font info for 71 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 117i,12n,121p,1711b,1414s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (14 pages, 55640 bytes).\n```", "repo_url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics"} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass[dissertation,table,dvipnames]{uathesis} % we require tikz, which requires xcolor, if you want to load these packages with options, then do it as seen here. Any tikz or xcolor options need to be passed along here. Alternatively, you should also be able to load these packages explicitly", "replace": "\\documentclass[dissertation,xcolor={table,dvipnames}]{uathesis} % we require tikz, which requires xcolor, if you want to load these packages with options, then do it as seen here.", "type": "real"}], "reported_file": "chapter2.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 17, "text": "Undefined control sequence.", "file": "chapter2.tex", "fileLabel": "chapter2.tex"}, {"line": 17, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 19, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 24, "text": "LaTeX Error: Illegal character in array arg.", "file": "main.tex", "fileLabel": null}, {"line": 26, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 28, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 32, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 37, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "FFB0AEDF9C33DDC67A5FD03D2;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 41267 strings out of 467099\n 885028 string characters out of 5408265\n 1725545 words of memory out of 5000000\n 70028 multiletter control sequences out of 15000+600000\n 636149 words of font info for 69 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,10n,121p,1747b,1420s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (13 pages, 95443 bytes).\nPDF statistics:\n 138 PDF objects out of 1000 (max. 8388607)\n 107 compressed objects within 2 object streams\n 38 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `chapter2.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- chapter2.tex line 17: Undefined control sequence.\n- line 17: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 24: LaTeX Error: Illegal character in array arg.\n- line 26: Undefined control sequence.\n- line 28: Undefined control sequence.\n- line 32: Undefined control sequence.\n- line 37: Undefined control sequence.\n\nProject files:\n- LICENSE\n- Makefile\n- README.md\n- abstract.tex\n- acknowledgements.tex\n- appendix.tex\n- bibliography.bib\n- cclicenses.sty\n- chapter2.tex\n- chapter3.tex\n- custom-commands.tex\n- dedication.tex\n- introduction.tex\n- main.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nOther project files (edit them with ):\n\n`main.tex` (lines 1-42, line-numbered):\n```\n1: % Sample Dissertation, Thesis, or Document %\n2: % for use with the %\n3: % University of Arizona Thesis Class, %\n4: % uathesis.cls %\n5: %------------------------------------------%\n6: \n7: % This is an adapted version of J.J. Charfman's template which can be\n8: % found here: https://da.overleaf.com/latex/templates/university-of-arizona-astronomy-thesis-template/tsfqcgnfmjcx\n9: % This template is adapted for linguistics. The uncommented line\n10: % below will produce a Dissertation, the others would produce a Thesis\n11: % or a Document. There are other options available to you like turning\n12: % on the copyright statement and replacing the year on the title page\n13: % with a \"generated on\" stamp (handy for early drafts). To find out\n14: % what the available options are, take a look into the uathesis.cls\n15: % file and look for the \\DeclareOption commands near the top of that\n16: % file.\n17: % There are five copyright options. Copyright, no copyright, and three\n18: % different Creative Commons licences. Use the one you want (If you go\n19: % Creative Commons, I (DM) think the CC-BY-ND makes the most sense) See\n20: % uathesis.cls for the reason why the non-commercial licenses are not\n21: % included.\n22: \\documentclass[dissertation,table,dvipnames]{uathesis} % we require tikz, which requires xcolor, if you want to load these packages with options, then do it as seen here. Any tikz or xcolor options need to be passed along here. Alternatively, you should also be able to load these packages explicitly\n23: %\\documentclass[dissertation,copyright]{uathesis}\n24: %\\documentclass[dissertation,CC-BY]{uathesis}\n25: %\\documentclass[dissertation,CC-BY-SA]{uathesis}\n26: %\\documentclass[dissertation,CC-BY-ND]{uathesis}\n27: %\\documentclass[thesis]{uathesis}\n28: %\\documentclass[document]{uathesis}\n29: \n30: % Package Usage\n31: % These are the packages that I recommend\n32: \n33: \n34: %\\usepackage{color} %broader color range and color options, allows you to define your\n35: % own colors as RBG vectors\n36: \n37: \n38: \\usepackage{graphicx} % allows insertion of pictures etc\n39: \n40: \n41: \n42: \\usepackage[utf8]{inputenc} %allows you to directly input utf-8 characters\n```\n\n`uathesis.cls` (head and lines matching the log, line-numbered):\n```\n...\n28: \\NeedsTeXFormat{LaTeX2e}\n29: \\ProvidesClass{uathesis}[2005/08/09 University of Arizona Thesis Class]\n30: \n31: \\RequirePackage{ifthen}\n32: \\RequirePackage{tikz} % we need this for the watermark option\n33: \\RequirePackage{cclicenses} % This is used to generate the Creative Commons\n...\n37: \n38: \n...\n42: \n...\n44: \\newcommand{\\ThesisType}{\\emph{(please specify thesis, dissertation, or document as an option in the uathesis documentclass statement at the top of your file)}}\n45: \n46: \\DeclareOption{thesis}{%\n47: \t\\renewcommand{\\ThesisType}{Thesis}\n48: }\n49: \n50: \\DeclareOption{dissertation}{%\n51: \t\\renewcommand{\\ThesisType}{Dissertation}\n52: }\n53: \n54: \\DeclareOption{document}{%\n55: \t\\renewcommand{\\ThesisType}{Document}\n56: }\n57: \n58: \\newboolean{Copyright}\n59: \\setboolean{Copyright}{false}\n60: \\DeclareOption{copyright}{%\n61: \t\\setboolean{Copyright}{true}\n62: }\n63: \n...\n66: \\newboolean{CCBY}\n```\n\nCurrent content of `chapter2.tex` (full file, line-numbered):\n```\n1: \\chapter[Chapter 2]{TitleofChapter}\n2: \n3: Let's make a figure out of a tree and position it right under our text:\n4: \n5: \\begin{figure}[h] %to understand figure positioning, please refer to: \n6: % https://www.overleaf.com/learn/latex/Inserting_Images\n7: \\centering\n8: \\begin{forest}\n9: [NP [DP] [N] ]\n10: \\end{forest}\n11: \\caption[A very special figure]{Caption}\n12: \\label{fig:mylabel}\n13: \\end{figure}\n14: \n15: And here is a table which we position at the bottom:\n16: %%%%%%%%% some custom definitions first\n17: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} %here we define a custom column\n18: % type, called 's', this will have the color as defined via HTML and a width of 3cm\n19: \\arrayrulecolor[HTML]{DB5800}\n20: \\colorlet{mycolor}{red!30!blue!50} % here we define our own color, using red \n21: % at 30% opacity and blue at 50%\n22: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n23: \\begin{table}[b!]\n24: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n25: \\hline\n26: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n27: \\hline\n28: Country Name or Area Name \\cellcolor{mycolor}\n29: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n30: \\hline\n31: Afghanistan & AF &AFG \\\\\n32: \\rowcolor{gray}\n33: Aland Islands & AX & ALA \\\\\n34: Albania &AL & ALB \\\\\n35: Algeria &DZ & DZA \\\\\n36: American Samoa & AS & ASM \\\\\n37: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n38: Angola & AO & AGO \\\\\n39: \\hline\n40: \\end{tabular}\n41: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n42: \\end{table}\n43: \n```\n\nCompile log (tail):\n```\nFFB0AEDF9C33DDC67A5FD03D2;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 41267 strings out of 467099\n 885028 string characters out of 5408265\n 1725545 words of memory out of 5000000\n 70028 multiletter control sequences out of 15000+600000\n 636149 words of font info for 69 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,10n,121p,1747b,1420s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (13 pages, 95443 bytes).\nPDF statistics:\n 138 PDF objects out of 1000 (max. 8388607)\n 107 compressed objects within 2 object streams\n 38 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\documentclass[dissertation,xcolor={table,dvipnames}]{uathesis} % we require tikz, which requires xcolor, if you want to load these packages with options, then do it as seen here.\n=======\n\\documentclass[dissertation,table,dvipnames]{uathesis} % we require tikz, which requires xcolor, if you want to load these packages with options, then do it as seen here. Any tikz or xcolor options need to be passed along here. Alternatively, you should also be able to load these packages explicitly\n>>>>>>> REPLACE\n", "id": "github2_remo-help__UofA-dissertation-template-for-linguistics__4c43424", "doc": "github_multi2/remo-help__UofA-dissertation-template-for-linguistics__4c43424", "mutation": "real", "source": "github", "repo": "remo-help/UofA-dissertation-template-for-linguistics", "sha": "4c43424a033d9101da08a7cab022246b3f140e34", "parent_sha": "f6308aa83c0552c5921ef72dd2d0054e5a3b32ed", "license": "CC0-1.0", "url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics/commit/4c43424a033d9101da08a7cab022246b3f140e34", "changed_files": ["dissertation.tex"], "original_root": "dissertation.tex", "n_files": 12, "engine": "pdflatex", "error_category": "Undefined control sequence.", "prompt_v1": "The LaTeX file `chapter2.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- chapter2.tex line 17: Undefined control sequence.\n- line 17: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 24: LaTeX Error: Illegal character in array arg.\n- line 26: Undefined control sequence.\n- line 28: Undefined control sequence.\n- line 32: Undefined control sequence.\n- line 37: Undefined control sequence.\n\nProject files:\n- LICENSE\n- Makefile\n- README.md\n- abstract.tex\n- acknowledgements.tex\n- appendix.tex\n- bibliography.bib\n- cclicenses.sty\n- chapter2.tex\n- chapter3.tex\n- custom-commands.tex\n- dedication.tex\n- introduction.tex\n- main.tex\n- sp-lsa.bst\n- ua_stack_rgb_4_0.png\n- uabibnat.bst\n- uathesis.cls\n- unified.bbx\n\nCurrent content of `chapter2.tex` (full file, line-numbered):\n```\n1: \\chapter[Chapter 2]{TitleofChapter}\n2: \n3: Let's make a figure out of a tree and position it right under our text:\n4: \n5: \\begin{figure}[h] %to understand figure positioning, please refer to: \n6: % https://www.overleaf.com/learn/latex/Inserting_Images\n7: \\centering\n8: \\begin{forest}\n9: [NP [DP] [N] ]\n10: \\end{forest}\n11: \\caption[A very special figure]{Caption}\n12: \\label{fig:mylabel}\n13: \\end{figure}\n14: \n15: And here is a table which we position at the bottom:\n16: %%%%%%%%% some custom definitions first\n17: \\newcolumntype{s}{>{\\columncolor[HTML]{AAACED}} p{3cm}} %here we define a custom column\n18: % type, called 's', this will have the color as defined via HTML and a width of 3cm\n19: \\arrayrulecolor[HTML]{DB5800}\n20: \\colorlet{mycolor}{red!30!blue!50} % here we define our own color, using red \n21: % at 30% opacity and blue at 50%\n22: %%%%%%%%% https://www.overleaf.com/learn/latex/Tables\n23: \\begin{table}[b!]\n24: \\begin{tabular}{ |s|p{3cm}|p{3cm}| }\n25: \\hline\n26: \\rowcolor{lightgray} \\multicolumn{3}{|c|}{Country List} \\\\\n27: \\hline\n28: Country Name or Area Name \\cellcolor{mycolor}\n29: & ISO ALPHA 2 Code &ISO ALPHA 3 \\\\\n30: \\hline\n31: Afghanistan & AF &AFG \\\\\n32: \\rowcolor{gray}\n33: Aland Islands & AX & ALA \\\\\n34: Albania &AL & ALB \\\\\n35: Algeria &DZ & DZA \\\\\n36: American Samoa & AS & ASM \\\\\n37: Andorra & AD & \\cellcolor[HTML]{AA0044} AND \\\\\n38: Angola & AO & AGO \\\\\n39: \\hline\n40: \\end{tabular}\n41: \\caption[the table's list reference in the list of tables]{A table with some color, positioned at the bottom of a page}\n42: \\end{table}\n43: \n```\n\nCompile log (tail):\n```\nFFB0AEDF9C33DDC67A5FD03D2;930.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 41267 strings out of 467099\n 885028 string characters out of 5408265\n 1725545 words of memory out of 5000000\n 70028 multiletter control sequences out of 15000+600000\n 636149 words of font info for 69 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,10n,121p,1747b,1420s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (13 pages, 95443 bytes).\nPDF statistics:\n 138 PDF objects out of 1000 (max. 8388607)\n 107 compressed objects within 2 object streams\n 38 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "repo_url": "https://github.com/remo-help/UofA-dissertation-template-for-linguistics"} {"bib": false, "lane": "project", "file_edits": [{"file": "Minworkingexample.sty", "search": " \\setcounter{tocdepth}{2}", "replace": " \\setcounter{tocdepth}{2}}", "type": "real"}, {"file": "Minworkingexample.sty", "search": " \\addtodef{\\cftbookbreak}{\\par}{}\n }", "replace": " \\addtodef{\\cftbookbreak}{\\par}{}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["Minworkingexample.sty"], "single_shot_visible": true, "error_lines": [{"line": 10, "text": "LaTeX Error: Command \\cftpartformatpnum undefined.", "file": "main.tex", "fileLabel": null}], "log_tail": "age rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 7C932D29F8B77F228DA605D579563B9A;244.\n ) \nHere is how much of TeX's memory you used:\n 11607 strings out of 467099\n 182182 string characters out of 5408265\n 632128 words of memory out of 5000000\n 40856 multiletter control sequences out of 15000+600000\n 630800 words of font info for 50 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,539b,449s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (7 pages, 76146 bytes).\nPDF statistics:\n 77 PDF objects out of 1000 (max. 8388607)\n 55 compressed objects within 1 object stream\n 13 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: LaTeX Error: Command \\cftpartformatpnum undefined.\n\nProject files:\n- Minworkingexample.sty\n- main.tex\n\nOther project files (edit them with ):\n\n`Minworkingexample.sty` (full file, line-numbered):\n```\n1: % Minimum working example for ! LaTeX Error: Command \\cftpartformatpnum undefined.\n2: \n3: % This code is copied directly from pg. 203-205 from the `The memoir class' documentation PDF\n4: \n5: \\NeedsTeXFormat{LaTeX2e}\n6: \\ProvidesPackage{Minworkingexample}[2021/06/28 Example package]\n7: \n8: \\newcommand*{\\setupshorttoc}{%\n9: \\renewcommand*{\\contentsname}{Short contents}\n10: \\let\\oldchangetocdepth\\changetocdepth\n11: \\renewcommand*{\\changetocdepth}[1]{}\n12: \\let\\oldprecistoctext\\precistoctext\n13: \\renewcommand{\\precistoctext}[1]{}\n14: \\let\\oldcftchapterfillnum\\cftchapterfillnum\n15: \\setcounter{tocdepth}{0}% chapters and above\n16: \\renewcommand*{\\cftchapterfont}{\\hfill\\sffamily}\n17: \\renewcommand*{\\cftchapterleader}{ \\textperiodcentered\\space}\n18: \\renewcommand*{\\cftchapterafterpnum}{\\cftparfillskip}\n19: \\setpnumwidth{0em}\n20: \\setpnumwidth{1.5em}\n21: \\renewcommand*{\\cftchapterfillnum}[1]{%\n22: {\\cftchapterleader}\\nobreak\n23: \\hbox to 1.5em{\\cftchapterpagefont ##1\\hfil}\\cftchapterafterpnum\\par}\n24: \\setrmarg{0.3\\textwidth}\n25: \\setlength{\\unitlength}{\\@tocrmarg}\n26: \\addtolength{\\unitlength}{1.5em} % Add curly brace here before %, comment the code below out and no error is produced.\n27: \n28: %The code below is what is causing the issues with \\cftpartformatpnum\n29: \n30: \\let\\oldcftpartformatpnum\\cftpartformatpnum\n31: \\renewcommand*{\\cftpartformatpnum}[1]{%\n32: \\hbox to\\unitlength{{\\cftpartpagefont ##1}}}\n33: \\let\\oldcftbookformatpnum\\cftbookformatpnum\n34: \\renewcommand*{\\cftbookformatpnum}[1]{%\n35: \\hbox to\\unitlength{{\\cftbookpagefont ##1}}}}\n36: \n37: %The code above is what is causing the issues \\cftpartformatpnum\n38: \n39: %%% The code below seems to work correctly and has no issues\n40: %%% so I believe it can be ignored. Needs to be included in this though I think\n41: \n42: \\newcommand*{\\setupparasubsecs}{%\n43: \\let\\oldnumberline\\numberline\n44: \\renewcommand*{\\cftsubsectionfont}{\\itshape}\n45: \\renewcommand*{\\cftsubsectionpagefont}{\\itshape}\n46: \\renewcommand{\\l@subsection}[2]{%\n47: \\def\\numberline####1{\\textit{####1}~}%\n48: \\leftskip=\\cftsubsectionindent\n49: \\rightskip=\\@tocrmarg\n50: \\parfillskip=\\fill\n51: \\ifhmode ,\\ \\else\\noindent\\fi\n52: \\ignorespaces\n53: {\\cftsubsectionfont ##1}~{\\cftsubsectionpagefont##2}%\n54: \\let\\numberline\\oldnumberline\\ignorespaces}\n55: }\n56: \\AtEndDocument{\\addtocontents{toc}{\\par}}\n57: \n58: \\newcommand*{\\setupmaintoc}{%\n59: \\renewcommand{\\contentsname}{Contents}\n60: \\let\\changetocdepth\\oldchangetocdepth\n61: \\let\\precistoctext\\oldprecistoctext\n62: \\let\\cftchapterfillnum\\oldcftchapterfillnum\n63: \\addtodef{\\cftchapterbreak}{\\par}{}\n64: \\renewcommand*{\\cftchapterfont}{\\normalfont\\sffamily}\n65: \\renewcommand*{\\cftchapterleader}{%\n66: \\sffamily\\cftdotfill{\\cftchapterdotsep}}\n67: \\renewcommand*{\\cftchapterafterpnum}{}\n68: \\renewcommand{\\cftchapterbreak}{\\par\\addpenalty{-\\@highpenalty}}\n69: \\setpnumwidth{2.55em}\n70: \\setrmarg{3.55em}\n71: \\setcounter{tocdepth}{2}\n72: \\let\\cftpartformatpnum\\oldcftpartformatpnum\n73: \\addtodef{\\cftpartbreak}{\\par}{}\n74: \\let\\cftbookformatpnum\\oldcftbookformatpnum\n75: \\addtodef{\\cftbookbreak}{\\par}{}\n76: }\n77: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Minimum working example for ! LaTeX Error: Command \\cftpartformatpnum undefined.\n2: \n3: \\documentclass{memoir}\n4: \\usepackage{Minworkingexample}\n5: \\usepackage{blindtext}\n6: \\usepackage{hyperref} % Included hyperref: a) in case it was causing errors, b) hyperlink the TOC's\n7: \n8: \\begin{document}\n9: \n10: \\setupshorttoc % This section is copied directly from pg. 203-205 from the `The memoir class'\n11: \\tableofcontents* % documentation PDF.\n12: \\clearpage\n13: \\setupparasubsecs\n14: \\setupmaintoc\n15: \\tableofcontents*\n16: \\setlength{\\unitlength}{1pt} % pg. 205 `The memoir class' PDF documentation\n17: \\newpage\n18: \n19: \\begin{abstract}\n20: \\blindtext\n21: \\end{abstract}\n22: \n23: \\chapter{Introduction}\n24: \\blindtext\n25: \\subsection{Intro}\n26: \\blindtext\n27: \\chapter{Test}\n28: \\blindtext\n29: \n30: \\end{document}\n31: \n```\n\nCompile log (tail):\n```\nage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 7C932D29F8B77F228DA605D579563B9A;244.\n ) \nHere is how much of TeX's memory you used:\n 11607 strings out of 467099\n 182182 string characters out of 5408265\n 632128 words of memory out of 5000000\n 40856 multiletter control sequences out of 15000+600000\n 630800 words of font info for 50 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,539b,449s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (7 pages, 76146 bytes).\nPDF statistics:\n 77 PDF objects out of 1000 (max. 8388607)\n 55 compressed objects within 1 object stream\n 13 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\addtodef{\\cftbookbreak}{\\par}{}\n=======\n \\addtodef{\\cftbookbreak}{\\par}{}\n }\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\setcounter{tocdepth}{2}}\n=======\n \\setcounter{tocdepth}{2}\n>>>>>>> REPLACE\n", "id": "texse_multi_602963", "doc": "texse_multi/602963", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/602963", "fix_answer": "accepted", "answer_id": 602965, "answer_score": 1, "fix_source": "snippet", "companions": ["Minworkingexample.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS undefined.", "changed_files": ["Minworkingexample.sty"], "question_id": 602963, "accepted_answer_id": 602965, "title": "Memoir multiple table of contents: undefined error", "tags": ["table-of-contents", "memoir", "undefined"], "score": 0, "created": "2021-06-28", "error_message": "LaTeX Error: Command \\cftpartformatpnum undefined.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: LaTeX Error: Command \\cftpartformatpnum undefined.\n\nProject files:\n- Minworkingexample.sty\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Minimum working example for ! LaTeX Error: Command \\cftpartformatpnum undefined.\n2: \n3: \\documentclass{memoir}\n4: \\usepackage{Minworkingexample}\n5: \\usepackage{blindtext}\n6: \\usepackage{hyperref} % Included hyperref: a) in case it was causing errors, b) hyperlink the TOC's\n7: \n8: \\begin{document}\n9: \n10: \\setupshorttoc % This section is copied directly from pg. 203-205 from the `The memoir class'\n11: \\tableofcontents* % documentation PDF.\n12: \\clearpage\n13: \\setupparasubsecs\n14: \\setupmaintoc\n15: \\tableofcontents*\n16: \\setlength{\\unitlength}{1pt} % pg. 205 `The memoir class' PDF documentation\n17: \\newpage\n18: \n19: \\begin{abstract}\n20: \\blindtext\n21: \\end{abstract}\n22: \n23: \\chapter{Introduction}\n24: \\blindtext\n25: \\subsection{Intro}\n26: \\blindtext\n27: \\chapter{Test}\n28: \\blindtext\n29: \n30: \\end{document}\n31: \n```\n\nCompile log (tail):\n```\nage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: 7C932D29F8B77F228DA605D579563B9A;244.\n ) \nHere is how much of TeX's memory you used:\n 11607 strings out of 467099\n 182182 string characters out of 5408265\n 632128 words of memory out of 5000000\n 40856 multiletter control sequences out of 15000+600000\n 630800 words of font info for 50 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,539b,449s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (7 pages, 76146 bytes).\nPDF statistics:\n 77 PDF objects out of 1000 (max. 8388607)\n 55 compressed objects within 1 object stream\n 13 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/602963", "answer_url": "https://tex.stackexchange.com/a/602965", "question_author": {"user_id": null, "name": "user245306", "url": null}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 3929, "name": "daleif", "url": "https://tex.stackexchange.com/users/3929"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " #1\n % here I must revert the effect of \\obeylines and \\obeyspaces\n \\catcode`\\ =10 %\n \\catcode`\\^^M=5 %\n \\input{a.tex}%\n}{}\n\\AddToHook{env/foo/before}{\\bgroup\\obeylines\\obeyspaces}\n\\AddToHook{env/foo/after}{\\egroup}\n\\begin{document}\n\\begin{tikzpicture}\n\\node (v) {hi};\n\\end{tikzpicture}", "replace": " % here I process the incoming #1\n % here I must revert the effect of \\obeylines and \\obeyspaces\n \\input{a.tex}\n}{}\n\\AddToHook{env/foo/begin}{\\obeylines\\obeyspaces}\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": "\\end{foo}\naaa\nbbb\n\\end{document}", "replace": "\\end{foo}\n\\end{document}", "type": "real"}], "reported_file": "a.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 2, "text": "Package tikz Error: A node must have a (possibly empty) label text.", "file": "a.tex", "fileLabel": "a.tex"}, {"line": 2, "text": "Package pgf Error: No shape named `v' is known.", "file": "main.tex", "fileLabel": null}, {"line": 3, "text": "Extra }, or forgotten \\endgroup.", "file": "main.tex", "fileLabel": null}, {"line": 13, "text": "LaTeX Error: \\begin{tikzpicture} on input line 1 ended by \\end{foo}.", "file": "main.tex", "fileLabel": null}, {"line": 14, "text": "LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": " \nl.13 \\end{foo}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.14 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 10 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 11956 strings out of 467099\n 253325 string characters out of 5408265\n 630768 words of memory out of 5000000\n 41123 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 102i,6n,107p,419b,553s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 3 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `a.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- a.tex line 2: Package tikz Error: A node must have a (possibly empty) label text.\n- line 2: Package pgf Error: No shape named `v' is known.\n- line 3: Extra }, or forgotten \\endgroup.\n- line 13: LaTeX Error: \\begin{tikzpicture} on input line 1 ended by \\end{foo}.\n- line 14: LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.\n\nProject files:\n- a.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \\usepackage{tikz}\n3: \\NewDocumentEnvironment{foo}{b}{\n4: #1\n5: % here I must revert the effect of \\obeylines and \\obeyspaces\n6: \\catcode`\\ =10 %\n7: \\catcode`\\^^M=5 %\n8: \\input{a.tex}%\n9: }{}\n10: \\AddToHook{env/foo/before}{\\bgroup\\obeylines\\obeyspaces}\n11: \\AddToHook{env/foo/after}{\\egroup}\n12: \\begin{document}\n13: \\begin{tikzpicture}\n14: \\node (v) {hi};\n15: \\end{tikzpicture}\n16: \\begin{foo}\n17: first\n18: second\n19: \\end{foo}\n20: aaa\n21: bbb\n22: \\end{document}\n23: \n```\n\nCurrent content of `a.tex` (full file, line-numbered):\n```\n1: \\begin{tikzpicture}\n2: \\node[] (v) {hi};\n3: \\end{tikzpicture}\n4: \\endinput\n5: \n```\n\nCompile log (tail):\n```\nl.13 \\end{foo}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.14 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 10 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 11956 strings out of 467099\n 253325 string characters out of 5408265\n 630768 words of memory out of 5000000\n 41123 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 102i,6n,107p,419b,553s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 3 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\end{foo}\n\\end{document}\n=======\n\\end{foo}\naaa\nbbb\n\\end{document}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n % here I process the incoming #1\n % here I must revert the effect of \\obeylines and \\obeyspaces\n \\input{a.tex}\n}{}\n\\AddToHook{env/foo/begin}{\\obeylines\\obeyspaces}\n\\begin{document}\n=======\n #1\n % here I must revert the effect of \\obeylines and \\obeyspaces\n \\catcode`\\ =10 %\n \\catcode`\\^^M=5 %\n \\input{a.tex}%\n}{}\n\\AddToHook{env/foo/before}{\\bgroup\\obeylines\\obeyspaces}\n\\AddToHook{env/foo/after}{\\egroup}\n\\begin{document}\n\\begin{tikzpicture}\n\\node (v) {hi};\n\\end{tikzpicture}\n>>>>>>> REPLACE\n", "id": "texse_multi_661056", "doc": "texse_multi/661056", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/661056", "fix_answer": "accepted", "answer_id": 661117, "answer_score": 2, "fix_source": "answer_doc", "companions": ["a.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "Package tikz Error: A node must have a (possibly empty) label text.", "changed_files": ["main.tex"], "question_id": 661056, "accepted_answer_id": 661117, "title": "How to revert the effect of \\obeylines and \\obeyspaces for \\input content?", "tags": ["catcodes"], "score": 0, "created": "2022-10-09", "error_message": "Package tikz Error: A node must have a (possibly empty) label text.", "prompt_v1": "The LaTeX file `a.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- a.tex line 2: Package tikz Error: A node must have a (possibly empty) label text.\n- line 2: Package pgf Error: No shape named `v' is known.\n- line 3: Extra }, or forgotten \\endgroup.\n- line 13: LaTeX Error: \\begin{tikzpicture} on input line 1 ended by \\end{foo}.\n- line 14: LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.\n\nProject files:\n- a.tex\n- main.tex\n\nCurrent content of `a.tex` (full file, line-numbered):\n```\n1: \\begin{tikzpicture}\n2: \\node[] (v) {hi};\n3: \\end{tikzpicture}\n4: \\endinput\n5: \n```\n\nCompile log (tail):\n```\nl.13 \\end{foo}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{foo} on input line 10 ended by \\end{document}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.14 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 10 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 11956 strings out of 467099\n 253325 string characters out of 5408265\n 630768 words of memory out of 5000000\n 41123 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 102i,6n,107p,419b,553s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 3 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/661056", "answer_url": "https://tex.stackexchange.com/a/661117", "question_author": {"user_id": 1449, "name": "yegor256", "url": "https://tex.stackexchange.com/users/1449"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "packages/solutions.sty", "search": "\n\\ProcessOptions\\relax\n\\newenvironment{solution}[1]{", "replace": "\n\\newenvironment{solution}[1]{", "type": "real"}, {"file": "packages/solutions.sty", "search": " \\fi\n}{}", "replace": " \\fi\n}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["packages/solutions.sty"], "single_shot_visible": false, "error_lines": [{"line": 3, "text": "File ended while scanning use of \\@newenv.", "file": "main.tex", "fileLabel": null}, {"line": 4, "text": "LaTeX Error: Environment solution undefined.", "file": "main.tex", "fileLabel": null}, {"line": 6, "text": "LaTeX Error: \\begin{document} ended by \\end{solution}.", "file": "main.tex", "fileLabel": null}], "log_tail": "}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{solution}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.6 \\end{solution}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 5211 strings out of 467099\n 82750 string characters out of 5408265\n 519755 words of memory out of 5000000\n 34545 multiletter control sequences out of 15000+600000\n 628671 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,553b,246s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 9788 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 3: File ended while scanning use of \\@newenv.\n- line 4: LaTeX Error: Environment solution undefined.\n- line 6: LaTeX Error: \\begin{document} ended by \\end{solution}.\n\nProject files:\n- main.tex\n- packages/solutions.sty\n\nOther project files (edit them with ):\n\n`packages/solutions.sty` (full file, line-numbered):\n```\n1: \\ProvidesPackage{solutions}\n2: \n3: \\newif\\ifsolutions\n4: \\solutionsfalse\n5: \\DeclareOption{solutions}{\\solutionstrue}\n6: \\DeclareOption{nosolutions}{\\solutionsfalse}\n7: \n8: \\ProcessOptions\\relax\n9: \\newenvironment{solution}[1]{\n10: \\ifsolutions\n11: #1 $\\delta$ % I'd ideally want to write the solution in a gray box\n12: \\else\n13: #1 $\\bullet$ % I'd like to ignore all the input when solutions is false, but putting a circle will do for now.\n14: \\fi\n15: }{}\n16: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[reqno, 12pt, twoside, letterpaper]{memoir}\n2: \\usepackage[nosolutions]{packages/solutions}\n3: \\begin{document}\n4: \\begin{solution}\n5: Test\n6: \\end{solution}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\n}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{solution}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.6 \\end{solution}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 5211 strings out of 467099\n 82750 string characters out of 5408265\n 519755 words of memory out of 5000000\n 34545 multiletter control sequences out of 15000+600000\n 628671 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,553b,246s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 9788 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\fi\n}\n=======\n \\fi\n}{}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\newenvironment{solution}[1]{\n=======\n\n\\ProcessOptions\\relax\n\\newenvironment{solution}[1]{\n>>>>>>> REPLACE\n", "id": "texse_multi_724452", "doc": "texse_multi/724452", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/724452", "fix_answer": "accepted", "answer_id": 724453, "answer_score": 4, "fix_source": "snippet", "companions": ["packages/solutions.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["packages/solutions.sty"], "question_id": 724452, "accepted_answer_id": 724453, "title": "Package with environment that changes according to option", "tags": ["packages", "environments"], "score": 2, "created": "2024-08-15", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 3: File ended while scanning use of \\@newenv.\n- line 4: LaTeX Error: Environment solution undefined.\n- line 6: LaTeX Error: \\begin{document} ended by \\end{solution}.\n\nProject files:\n- main.tex\n- packages/solutions.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[reqno, 12pt, twoside, letterpaper]{memoir}\n2: \\usepackage[nosolutions]{packages/solutions}\n3: \\begin{document}\n4: \\begin{solution}\n5: Test\n6: \\end{solution}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\n}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{solution}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.6 \\end{solution}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 5211 strings out of 467099\n 82750 string characters out of 5408265\n 519755 words of memory out of 5000000\n 34545 multiletter control sequences out of 15000+600000\n 628671 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,553b,246s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 9788 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/724452", "answer_url": "https://tex.stackexchange.com/a/724453", "question_author": {"user_id": 35209, "name": "aram", "url": "https://tex.stackexchange.com/users/35209"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 256849, "name": "ljguo", "url": "https://tex.stackexchange.com/users/256849"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\abstract{\\lipsum[1]}\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": "\\maketitle\n\n\n\\section{Introduction}", "replace": "\\maketitle\n\n\\begin{abstract}\n\\lipsum[1]\n\\end{abstract}\n\n\\section{Introduction}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 10, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "ror message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n\nOverfull \\hbox (3.22357pt too wide) in paragraph at lines 18--18\n\\OT1/cmr/m/n/10 li-bero, no-nummy eget, con-sec-te-tuer id, vul-\n []\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 4169 strings out of 467099\n 101659 string characters out of 5408265\n 720564 words of memory out of 5000000\n 33536 multiletter control sequences out of 15000+600000\n 630924 words of font info for 49 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 122i,7n,121p,11208b,339s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (1 page, 48078 bytes).\nPDF statistics:\n 28 PDF objects out of 1000 (max. 8388607)\n 16 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: Undefined control sequence.\n\nProject files:\n- main.tex\n- test.cls\n\nOther project files (edit them with ):\n\n`test.cls` (full file, line-numbered):\n```\n1: \\ProvidesClass{test}[2021/03/22 v0.1 Test class]\n2: \n3: % Set up basic geometry\n4: \\LoadClass[10pt,a4paper,parskip=half]{scrartcl}\n5: \n6: % Define title\n7: \\let\\test@maketitle\\maketitle\n8: \\renewcommand{\\maketitle}{\n9: \\twocolumn[\n10: \\test@maketitle\n11: \\large%\n12: \\begin{center}{%\n13: \\bfseries \\abstractname\\vspace{-0.7em}\\vspace{\\z@}%\n14: }\\end{center}%\n15: \\@abstract%\n16: \\vspace{3.0em}%\n17: ]\n18: \\thispagestyle{empty}\n19: }\n20: \n21: % Change title command\n22: \\renewcommand{\\@maketitle}{%\n23: \\begin{center}%\n24: \\let\\footnote\\thanks%\n25: {%\n26: \\Large\\bfseries%\n27: \\expandafter\\uppercase\\expandafter{\\@title}%\n28: \\par%\n29: }%\n30: \\vskip 1.5em%\n31: {%\n32: \\Large\\lineskip .5em%\n33: \\begin{tabular}[t]{c}%\n34: \\@author%\n35: \\end{tabular}%\n36: \\par%\n37: }%\n38: \\vskip 1em%\n39: {%\n40: \\large\\@date%\n41: }%\n42: \\end{center}%\n43: \\par\\vskip 1.5em%\n44: }\n45: \n46: % Renew abstract command to store the abstract\n47: \\renewcommand{\\abstract}[1]{\n48: \\def\\@abstract{#1}\n49: }\n50: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{test}\n2: \n3: \\usepackage{lipsum}\n4: \n5: \\title{MWE}\n6: \\author{raedma}\n7: \n8: \\begin{document}\n9: \n10: \\maketitle\n11: \n12: \\begin{abstract}\n13: \\lipsum[1]\n14: \\end{abstract}\n15: \n16: \\section{Introduction}\n17: \\lipsum[1]\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\nror message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n\nOverfull \\hbox (3.22357pt too wide) in paragraph at lines 18--18\n\\OT1/cmr/m/n/10 li-bero, no-nummy eget, con-sec-te-tuer id, vul-\n []\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 4169 strings out of 467099\n 101659 string characters out of 5408265\n 720564 words of memory out of 5000000\n 33536 multiletter control sequences out of 15000+600000\n 630924 words of font info for 49 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 122i,7n,121p,11208b,339s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (1 page, 48078 bytes).\nPDF statistics:\n 28 PDF objects out of 1000 (max. 8388607)\n 16 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\maketitle\n\n\\begin{abstract}\n\\lipsum[1]\n\\end{abstract}\n\n\\section{Introduction}\n=======\n\\maketitle\n\n\n\\section{Introduction}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\abstract{\\lipsum[1]}\n\\begin{document}\n>>>>>>> REPLACE\n", "id": "texse_multi_588483", "doc": "texse_multi/588483", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/588483", "fix_answer": "accepted", "answer_id": 588493, "answer_score": 3, "fix_source": "answer_doc", "companions": ["test.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 588483, "accepted_answer_id": 588493, "title": "Macro: Storage and usage of abstract content does not work in cls", "tags": ["macros"], "score": 2, "created": "2021-03-22", "error_message": "Undefined control sequence", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: Undefined control sequence.\n\nProject files:\n- main.tex\n- test.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{test}\n2: \n3: \\usepackage{lipsum}\n4: \n5: \\title{MWE}\n6: \\author{raedma}\n7: \n8: \\begin{document}\n9: \n10: \\maketitle\n11: \n12: \\begin{abstract}\n13: \\lipsum[1]\n14: \\end{abstract}\n15: \n16: \\section{Introduction}\n17: \\lipsum[1]\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\nror message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n\nOverfull \\hbox (3.22357pt too wide) in paragraph at lines 18--18\n\\OT1/cmr/m/n/10 li-bero, no-nummy eget, con-sec-te-tuer id, vul-\n []\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n\n\n]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 4169 strings out of 467099\n 101659 string characters out of 5408265\n 720564 words of memory out of 5000000\n 33536 multiletter control sequences out of 15000+600000\n 630924 words of font info for 49 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 122i,7n,121p,11208b,339s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>\nOutput written on main.pdf (1 page, 48078 bytes).\nPDF statistics:\n 28 PDF objects out of 1000 (max. 8388607)\n 16 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/588483", "answer_url": "https://tex.stackexchange.com/a/588493", "question_author": {"user_id": 44634, "name": "raedma", "url": "https://tex.stackexchange.com/users/44634"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass[ebook,12pt]{memoir}\n\\RequirePackage[", "replace": "% !TeX TS-program = xelatex\n\\documentclass[ebook,12pt]{memoir}\n\\RequirePackage[%", "type": "real"}, {"file": "main.tex", "search": "\\addbibresource{./preu0.bib}\n\\NewCommandCopy\\bltxaddspace\\addspace\n\\RequirePackage{musixtex}", "replace": "\\addbibresource{./preu0.bib}\n\\RequirePackage{musixtex}", "type": "real"}, {"file": "main.tex", "search": "\\cite{GUIT:SAGR1}\n\\RenewCommandCopy\\addspace\\bltxaddspace\n\\printbibliography", "replace": "\\cite{GUIT:SAGR1}\n\\printbibliography", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 12, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}], "log_tail": "ide) in paragraph at lines 12--12\n\\OT1/cmtt/m/n/12 apdfsdelcamp / Julio _ Salvador _ Sagreras _ 1 _ Las _\n\n\\hbox(8.33331+2.66666)x264.84747 []\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 14729 strings out of 467099\n 247931 string characters out of 5408265\n 912599 words of memory out of 5000000\n 43905 multiletter control sequences out of 15000+600000\n 705177 words of font info for 197 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,1878b,1369s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 51484 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 23 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 12: Missing number, treated as zero.\n\nProject files:\n- main.tex\n- preu0.bib\n\nOther project files (edit them with ):\n\n`preu0.bib` (full file, line-numbered):\n```\n1: @book{GUIT:SAGR1,\n2: author = {Sagreras, Julio S.},\n3: title = {Las primeras lecciones de guitarra},\n4: date = {2022-02-13},\n5: url = {https://www.delcamp.net/apdfsdelcamp/Julio_Salvador_Sagreras_1_Las_Primeras_Lecciones_de_guitarra.pdf},\n6: urldate = {2025-05-06},\n7: }\n8: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % !TeX TS-program = xelatex\n2: \\documentclass[ebook,12pt]{memoir}\n3: \\RequirePackage[%\n4: backend=bibtex,\n5: ]{biblatex}\n6: \\addbibresource{./preu0.bib}\n7: \\RequirePackage{musixtex}\n8: \\begin{document}\n9: Hola\n10: \\cite{GUIT:SAGR1}\n11: \\printbibliography\n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nide) in paragraph at lines 12--12\n\\OT1/cmtt/m/n/12 apdfsdelcamp / Julio _ Salvador _ Sagreras _ 1 _ Las _\n\n\\hbox(8.33331+2.66666)x264.84747 []\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 14729 strings out of 467099\n 247931 string characters out of 5408265\n 912599 words of memory out of 5000000\n 43905 multiletter control sequences out of 15000+600000\n 705177 words of font info for 197 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,1878b,1369s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 51484 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 23 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\cite{GUIT:SAGR1}\n\\printbibliography\n=======\n\\cite{GUIT:SAGR1}\n\\RenewCommandCopy\\addspace\\bltxaddspace\n\\printbibliography\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\addbibresource{./preu0.bib}\n\\RequirePackage{musixtex}\n=======\n\\addbibresource{./preu0.bib}\n\\NewCommandCopy\\bltxaddspace\\addspace\n\\RequirePackage{musixtex}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n% !TeX TS-program = xelatex\n\\documentclass[ebook,12pt]{memoir}\n\\RequirePackage[%\n=======\n\\documentclass[ebook,12pt]{memoir}\n\\RequirePackage[\n>>>>>>> REPLACE\n", "id": "texse_multi_742532", "doc": "texse_multi/742532", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/742532", "fix_answer": "accepted", "answer_id": 742533, "answer_score": 2, "fix_source": "answer_doc", "companions": ["preu0.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing number, treated as zero.", "changed_files": ["main.tex"], "question_id": 742532, "accepted_answer_id": 742533, "title": "How to solve this incompatibility in musixtex and xelatex?", "tags": ["biblatex", "xetex", "musixtex"], "score": 0, "created": "2025-05-12", "error_message": "Illegal unit of measure (pt inserted).", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 12: Missing number, treated as zero.\n\nProject files:\n- main.tex\n- preu0.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % !TeX TS-program = xelatex\n2: \\documentclass[ebook,12pt]{memoir}\n3: \\RequirePackage[%\n4: backend=bibtex,\n5: ]{biblatex}\n6: \\addbibresource{./preu0.bib}\n7: \\RequirePackage{musixtex}\n8: \\begin{document}\n9: Hola\n10: \\cite{GUIT:SAGR1}\n11: \\printbibliography\n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nide) in paragraph at lines 12--12\n\\OT1/cmtt/m/n/12 apdfsdelcamp / Julio _ Salvador _ Sagreras _ 1 _ Las _\n\n\\hbox(8.33331+2.66666)x264.84747 []\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 14729 strings out of 467099\n 247931 string characters out of 5408265\n 912599 words of memory out of 5000000\n 43905 multiletter control sequences out of 15000+600000\n 705177 words of font info for 197 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 85i,11n,93p,1878b,1369s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 51484 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 23 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/742532", "answer_url": "https://tex.stackexchange.com/a/742533", "question_author": {"user_id": 18280, "name": "tatojo", "url": "https://tex.stackexchange.com/users/18280"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "pdfatest.cls", "search": "\\RequirePackage{filecontents}\n\\RequirePackage{etoolbox}\n\\AtEndPreamble{\n \\RequirePackage[a-3b]{pdfx}\n}", "replace": "\\usepackage[a-3b]{pdfx}\n\\RequirePackage{filecontents}", "type": "real"}, {"file": "pdfatest.cls", "search": "\\end{filecontents}\n\\endinput", "replace": "\\end{filecontents}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["pdfatest.cls"], "single_shot_visible": true, "error_lines": [{"line": 2468, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 2493, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 3007, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "ist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count299\n\\scratchdimen=\\dimen155\n\\scratchbox=\\box53\n\\nofMPsegments=\\count300\n\\nofMParguments=\\count301\n\\everyMPshowfont=\\toks22\n\\MPscratchCnt=\\count302\n\\MPscratchDim=\\dimen156\n\\MPnumerator=\\count303\n\\makeMPintoPDFobject=\\count304\n\\everyMPtoPDFconversion=\\toks23\n)\nPackage hyperref Info: Link coloring OFF on input line 6.\n (./main.out) (./main.out)\n\\@outlinefile=\\write4\n\\openout4 = `main.out'.\n\n [1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 11987 strings out of 467099\n 181841 string characters out of 5408265\n 583626 words of memory out of 5000000\n 41192 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 106i,5n,109p,531b,2316s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 20780 bytes).\nPDF statistics:\n 21 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2468: Undefined control sequence.\n- line 2493: Undefined control sequence.\n- line 3007: Undefined control sequence.\n\nProject files:\n- main.tex\n- pdfatest.cls\n\nOther project files (edit them with ):\n\n`pdfatest.cls` (full file, line-numbered):\n```\n1: \\ProvidesClass{pdfatest}[2018/04/12 V0.1 PDF/A Test]\n2: \\LoadClass[a4paper,11pt]{article}\n3: \n4: \\newcommand{\\cnumber}[1]{\\def\\@cnumber{#1}}\n5: \\newcommand{\\cauthor}[1]{\\def\\@cauthor{#1}}\n6: \n7: % Set PDF/A properties using pdfx and filecontens packages\n8: \\RequirePackage{filecontents}\n9: \\RequirePackage{etoolbox}\n10: \\AtEndPreamble{\n11: \\RequirePackage[a-3b]{pdfx}\n12: }\n13: \\begin{filecontents}{\\jobname.xmpdata}\n14: \\Title{Certificate of Calibration No \\@cnumber} % not working because \\@cnumber not defined\n15: \\Author{\\@cauthor} % not working because \\@cauthor not defined\n16: \\end{filecontents}\n17: \\endinput\n18: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{pdfatest}\n2: \n3: \\cnumber{123-45678}\n4: \\cauthor{My Name}\n5: \n6: \\begin{document}\n7: Bla bla ...\n8: \\end{document}\n9: \n```\n\nCompile log (tail):\n```\nist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count299\n\\scratchdimen=\\dimen155\n\\scratchbox=\\box53\n\\nofMPsegments=\\count300\n\\nofMParguments=\\count301\n\\everyMPshowfont=\\toks22\n\\MPscratchCnt=\\count302\n\\MPscratchDim=\\dimen156\n\\MPnumerator=\\count303\n\\makeMPintoPDFobject=\\count304\n\\everyMPtoPDFconversion=\\toks23\n)\nPackage hyperref Info: Link coloring OFF on input line 6.\n (./main.out) (./main.out)\n\\@outlinefile=\\write4\n\\openout4 = `main.out'.\n\n [1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 11987 strings out of 467099\n 181841 string characters out of 5408265\n 583626 words of memory out of 5000000\n 41192 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 106i,5n,109p,531b,2316s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 20780 bytes).\nPDF statistics:\n 21 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\end{filecontents}\n=======\n\\end{filecontents}\n\\endinput\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[a-3b]{pdfx}\n\\RequirePackage{filecontents}\n=======\n\\RequirePackage{filecontents}\n\\RequirePackage{etoolbox}\n\\AtEndPreamble{\n \\RequirePackage[a-3b]{pdfx}\n}\n>>>>>>> REPLACE\n", "id": "texse_multi_426167", "doc": "texse_multi/426167", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/426167", "fix_answer": "accepted", "answer_id": 426203, "answer_score": 2, "fix_source": "snippet", "companions": ["pdfatest.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["pdfatest.cls"], "question_id": 426167, "accepted_answer_id": 426203, "title": "Set PDF/A properties using filecontents package", "tags": ["hyperref", "pdfx", "filecontents"], "score": 1, "created": "2018-04-12", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2468: Undefined control sequence.\n- line 2493: Undefined control sequence.\n- line 3007: Undefined control sequence.\n\nProject files:\n- main.tex\n- pdfatest.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{pdfatest}\n2: \n3: \\cnumber{123-45678}\n4: \\cauthor{My Name}\n5: \n6: \\begin{document}\n7: Bla bla ...\n8: \\end{document}\n9: \n```\n\nCompile log (tail):\n```\nist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count299\n\\scratchdimen=\\dimen155\n\\scratchbox=\\box53\n\\nofMPsegments=\\count300\n\\nofMParguments=\\count301\n\\everyMPshowfont=\\toks22\n\\MPscratchCnt=\\count302\n\\MPscratchDim=\\dimen156\n\\MPnumerator=\\count303\n\\makeMPintoPDFobject=\\count304\n\\everyMPtoPDFconversion=\\toks23\n)\nPackage hyperref Info: Link coloring OFF on input line 6.\n (./main.out) (./main.out)\n\\@outlinefile=\\write4\n\\openout4 = `main.out'.\n\n [1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 11987 strings out of 467099\n 181841 string characters out of 5408265\n 583626 words of memory out of 5000000\n 41192 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 106i,5n,109p,531b,2316s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 20780 bytes).\nPDF statistics:\n 21 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/426167", "answer_url": "https://tex.stackexchange.com/a/426203", "question_author": {"user_id": 139832, "name": "Wollmich", "url": "https://tex.stackexchange.com/users/139832"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": null, "name": "user31729", "url": null}} {"bib": false, "lane": "project", "file_edits": [{"file": "class.cls", "search": "\\newcounter{exercounter}\n\\DeclareOption{withinchap}{\\counterwithin{exercounter}{chapter}}\n\\DeclareOption{withinsec}{\\counterwithin{exercounter}{section}}\n%\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}", "replace": "\\DeclareOption{withinchap}{%\n \\newcounter{exercounter}[chapter]%\n \\setcounter{exercounter}{0}}\n\n\\DeclareOption{withinsec}{%\n \\newcounter{exercounter}[section]%\n \\setcounter{exercounter}{0}}\n\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["class.cls"], "single_shot_visible": true, "error_lines": [{"line": 18, "text": "LaTeX Error: Command \\c@exercounter already defined.", "file": "main.tex", "fileLabel": null}], "log_tail": "3.\n\n(/usr/local/texlive/2026/texmf-dist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count287\n\\scratchdimen=\\dimen154\n\\scratchbox=\\box53\n\\nofMPsegments=\\count288\n\\nofMParguments=\\count289\n\\everyMPshowfont=\\toks18\n\\MPscratchCnt=\\count290\n\\MPscratchDim=\\dimen155\n\\MPnumerator=\\count291\n\\makeMPintoPDFobject=\\count292\n\\everyMPtoPDFconversion=\\toks19\n)\nChapter 1.\n[1\n\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1638 strings out of 467099\n 25894 string characters out of 5408265\n 442340 words of memory out of 5000000\n 31011 multiletter control sequences out of 15000+600000\n 629547 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 66i,14n,90p,225b,181s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 35375 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 18: LaTeX Error: Command \\c@exercounter already defined.\n\nProject files:\n- class.cls\n- main.tex\n\nOther project files (edit them with ):\n\n`class.cls` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}\n2: \\ProvidesClass{class}\n3: \\LoadClass{report}\n4: \n5: \n6: \\RequirePackage{indentfirst}\n7: \n8: \\newcounter{exercounter}\n9: \\DeclareOption{withinchap}{\\counterwithin{exercounter}{chapter}}\n10: \\DeclareOption{withinsec}{\\counterwithin{exercounter}{section}}\n11: %\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}\n12: \\ExecuteOptions{withinchap}\n13: \\ProcessOptions\\relax\n14: \n15: \n16: \\newenvironment{exercise}%\n17: {\\stepcounter{exercounter}\\par\\textbf{\\theexercounter.}}%\n18: {\\ignorespacesafterend}\n19: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[withinsec]{class}\n2: \\usepackage{showframe}\n3: \\begin{document}\n4: \n5: \\chapter{AAAAA}\n6: \\section{aaaaa}\n7: \n8: \\begin{exercise}\n9: This is an exercise.\n10: \\end{exercise}\n11: \n12: \\begin{exercise}\n13: This is another exercise.\n14: \\end{exercise}\n15: \n16: \\begin{exercise}\n17: This is the third exercise.\n18: \\end{exercise}\n19: \n20: \n21: \\section{bbbbb}\n22: \n23: \\begin{exercise}\n24: This is the fourth exercise in chapter one.\n25: \\end{exercise}\n26: \n27: \\begin{exercise}\n28: This is the fifth exerecise in chapter one.\n29: \\end{exercise}\n30: \n31: \n32: \\end{document}\n33: \n```\n\nCompile log (tail):\n```\n3.\n\n(/usr/local/texlive/2026/texmf-dist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count287\n\\scratchdimen=\\dimen154\n\\scratchbox=\\box53\n\\nofMPsegments=\\count288\n\\nofMParguments=\\count289\n\\everyMPshowfont=\\toks18\n\\MPscratchCnt=\\count290\n\\MPscratchDim=\\dimen155\n\\MPnumerator=\\count291\n\\makeMPintoPDFobject=\\count292\n\\everyMPtoPDFconversion=\\toks19\n)\nChapter 1.\n[1\n\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1638 strings out of 467099\n 25894 string characters out of 5408265\n 442340 words of memory out of 5000000\n 31011 multiletter control sequences out of 15000+600000\n 629547 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 66i,14n,90p,225b,181s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 35375 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\DeclareOption{withinchap}{%\n \\newcounter{exercounter}[chapter]%\n \\setcounter{exercounter}{0}}\n\n\\DeclareOption{withinsec}{%\n \\newcounter{exercounter}[section]%\n \\setcounter{exercounter}{0}}\n\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}\n=======\n\\newcounter{exercounter}\n\\DeclareOption{withinchap}{\\counterwithin{exercounter}{chapter}}\n\\DeclareOption{withinsec}{\\counterwithin{exercounter}{section}}\n%\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}\n>>>>>>> REPLACE\n", "id": "texse_multi_632017", "doc": "texse_multi/632017", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/632017", "fix_answer": "accepted", "answer_id": 632018, "answer_score": 5, "fix_source": "snippet", "companions": ["class.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS already defined.", "changed_files": ["class.cls"], "question_id": 632017, "accepted_answer_id": 632018, "title": "Define own class options relating to counter", "tags": ["class-options"], "score": 5, "created": "2022-01-30", "error_message": "LaTeX Error: Command \\c@exercounter already defined.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 18: LaTeX Error: Command \\c@exercounter already defined.\n\nProject files:\n- class.cls\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[withinsec]{class}\n2: \\usepackage{showframe}\n3: \\begin{document}\n4: \n5: \\chapter{AAAAA}\n6: \\section{aaaaa}\n7: \n8: \\begin{exercise}\n9: This is an exercise.\n10: \\end{exercise}\n11: \n12: \\begin{exercise}\n13: This is another exercise.\n14: \\end{exercise}\n15: \n16: \\begin{exercise}\n17: This is the third exercise.\n18: \\end{exercise}\n19: \n20: \n21: \\section{bbbbb}\n22: \n23: \\begin{exercise}\n24: This is the fourth exercise in chapter one.\n25: \\end{exercise}\n26: \n27: \\begin{exercise}\n28: This is the fifth exerecise in chapter one.\n29: \\end{exercise}\n30: \n31: \n32: \\end{document}\n33: \n```\n\nCompile log (tail):\n```\n3.\n\n(/usr/local/texlive/2026/texmf-dist/tex/context/base/mkii/supp-pdf.mkii\n[Loading MPS to PDF converter (version 2006.09.02).]\n\\scratchcounter=\\count287\n\\scratchdimen=\\dimen154\n\\scratchbox=\\box53\n\\nofMPsegments=\\count288\n\\nofMParguments=\\count289\n\\everyMPshowfont=\\toks18\n\\MPscratchCnt=\\count290\n\\MPscratchDim=\\dimen155\n\\MPnumerator=\\count291\n\\makeMPintoPDFobject=\\count292\n\\everyMPtoPDFconversion=\\toks19\n)\nChapter 1.\n[1\n\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1638 strings out of 467099\n 25894 string characters out of 5408265\n 442340 words of memory out of 5000000\n 31011 multiletter control sequences out of 15000+600000\n 629547 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 66i,14n,90p,225b,181s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 35375 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/632017", "answer_url": "https://tex.stackexchange.com/a/632018", "question_author": {"user_id": 241621, "name": "Stephen", "url": "https://tex.stackexchange.com/users/241621"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\BibSpecAlias{misc}{webpage}\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}, {"file": "references.bib", "search": "@misc{TexSE,", "replace": "@webpage{TexSE,", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "references.bib"], "single_shot_visible": true, "error_lines": [{"line": 5, "text": "Package amsrefs Error: Undefined entry type: .", "file": null, "fileLabel": "main.bbl"}], "log_tail": "roceed.\nIf that doesn't work, type X to quit.\n\n) [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2792 strings out of 467099\n 38544 string characters out of 5408265\n 450106 words of memory out of 5000000\n 31978 multiletter control sequences out of 15000+600000\n 632287 words of font info for 58 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 71i,5n,79p,261b,653s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 57773 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 5: Package amsrefs Error: Undefined entry type: .\n\nProject files:\n- main.tex\n- references.bib\n\nOther project files (edit them with ):\n\n`references.bib` (full file, line-numbered):\n```\n1: @misc{TexSE,\n2: TITLE={Tex StackExchange},\n3: AUTHOR={The Community},\n4: URL={https://tex.stackexchange.com/}\n5: }\n6: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{amsart}\n2: \\usepackage{amsrefs}\n3: \n4: \\begin{document}\n5: \\cite{TexSE}\n6: \\bibliography{references}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\nroceed.\nIf that doesn't work, type X to quit.\n\n) [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2792 strings out of 467099\n 38544 string characters out of 5408265\n 450106 words of memory out of 5000000\n 31978 multiletter control sequences out of 15000+600000\n 632287 words of font info for 58 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 71i,5n,79p,261b,653s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 57773 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n@webpage{TexSE,\n=======\n@misc{TexSE,\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\BibSpecAlias{misc}{webpage}\n\\begin{document}\n>>>>>>> REPLACE\n", "id": "texse_multi_628432", "doc": "texse_multi/628432", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/628432", "fix_answer": "accepted", "answer_id": 628472, "answer_score": 2, "fix_source": "multi", "companions": ["references.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package amsrefs Error: Undefined entry type: .", "changed_files": ["main.tex", "references.bib"], "question_id": 628432, "accepted_answer_id": 628472, "title": "amsrefs with bibtex -- using the webpage type", "tags": ["bibtex", "amsrefs"], "score": 1, "created": "2021-12-29", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 5: Package amsrefs Error: Undefined entry type: .\n\nProject files:\n- main.tex\n- references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{amsart}\n2: \\usepackage{amsrefs}\n3: \n4: \\begin{document}\n5: \\cite{TexSE}\n6: \\bibliography{references}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\nroceed.\nIf that doesn't work, type X to quit.\n\n) [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2792 strings out of 467099\n 38544 string characters out of 5408265\n 450106 words of memory out of 5000000\n 31978 multiletter control sequences out of 15000+600000\n 632287 words of font info for 58 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 71i,5n,79p,261b,653s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 57773 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/628432", "answer_url": "https://tex.stackexchange.com/a/628472", "question_author": {"user_id": 260515, "name": "RJP", "url": "https://tex.stackexchange.com/users/260515"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": " \\ifmyoptA", "replace": " \\ifMY@optA", "type": "real"}, {"file": "testclass.cls", "search": "\n\\NeedsTeXFormat{LaTeX2e}", "replace": "%! Class = testclass\n\n\\NeedsTeXFormat{LaTeX2e}", "type": "real"}, {"file": "testclass.cls", "search": "\n\\let\\ifmyoptA\\ifMY@optA\n\\newcommand{\\test}{\\ifMY@optA", "replace": "\n\\newcommand{\\test}{\\ifMY@optA", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "testclass.cls"], "single_shot_visible": true, "error_lines": [{"line": 17, "text": "Extra }, or forgotten \\endgroup.", "file": "main.tex", "fileLabel": null}], "log_tail": " \\end{frame}\n \nI'm ignoring this; it doesn't match any \\if.\n\n[2\n\n] [3]\n\\tf@nav=\\write6\n\\openout6 = `main.nav'.\n\n\\tf@toc=\\write7\n\\openout7 = `main.toc'.\n\n\\tf@snm=\\write8\n\\openout8 = `main.snm'.\n\n (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 21806 strings out of 467099\n 419422 string characters out of 5408265\n 831988 words of memory out of 5000000\n 50732 multiletter control sequences out of 15000+600000\n 629233 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,14n,137p,381b,581s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (3 pages, 23434 bytes).\nPDF statistics:\n 105 PDF objects out of 1000 (max. 8388607)\n 89 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 17: Extra }, or forgotten \\endgroup.\n\nProject files:\n- main.tex\n- testclass.cls\n\nOther project files (edit them with ):\n\n`testclass.cls` (full file, line-numbered):\n```\n1: \n2: \\NeedsTeXFormat{LaTeX2e}\n3: \\ProvidesClass{testclass}[2023/11/29 Minimum Working Example Class]\n4: \n5: \\LoadClass[t,xcolor={x11names},aspectratio=169]{beamer}\n6: \n7: \\RequirePackage{kvoptions}\n8: \\SetupKeyvalOptions{family=MY,prefix=MY@}\n9: \\DeclareBoolOption{optA}\n10: \\ProcessKeyvalOptions*\n11: \n12: \\let\\ifmyoptA\\ifMY@optA\n13: \\newcommand{\\test}{\\ifMY@optA\n14: true\n15: \\else\n16: false\n17: \\fi}\n18: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Preamble\n2: \\documentclass[optA=false]{testclass}\n3: \n4: % Document\n5: \\begin{document}\n6: \n7: \\begin{frame}{Works fine.}\n8: \\test\n9: \\end{frame}\n10: \n11: \\begin{frame}{Has an error.}\n12: \\ifMY@optA\n13: true\n14: \\else\n15: false\n16: \\fi\n17: \\end{frame}\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\n\\end{frame}\n \nI'm ignoring this; it doesn't match any \\if.\n\n[2\n\n] [3]\n\\tf@nav=\\write6\n\\openout6 = `main.nav'.\n\n\\tf@toc=\\write7\n\\openout7 = `main.toc'.\n\n\\tf@snm=\\write8\n\\openout8 = `main.snm'.\n\n (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 21806 strings out of 467099\n 419422 string characters out of 5408265\n 831988 words of memory out of 5000000\n 50732 multiletter control sequences out of 15000+600000\n 629233 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,14n,137p,381b,581s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (3 pages, 23434 bytes).\nPDF statistics:\n 105 PDF objects out of 1000 (max. 8388607)\n 89 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\newcommand{\\test}{\\ifMY@optA\n=======\n\n\\let\\ifmyoptA\\ifMY@optA\n\\newcommand{\\test}{\\ifMY@optA\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n%! Class = testclass\n\n\\NeedsTeXFormat{LaTeX2e}\n=======\n\n\\NeedsTeXFormat{LaTeX2e}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\ifMY@optA\n=======\n \\ifmyoptA\n>>>>>>> REPLACE\n", "id": "texse_multi_703023", "doc": "texse_multi/703023", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/703023", "fix_answer": "accepted", "answer_id": 703028, "answer_score": 2, "fix_source": "multi", "companions": ["testclass.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Extra }, or forgotten \\CS.", "changed_files": ["main.tex", "testclass.cls"], "question_id": 703023, "accepted_answer_id": 703028, "title": "How to access class boolean macro from main .tex document", "tags": ["luatex", "kvoptions"], "score": 0, "created": "2023-12-03", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 17: Extra }, or forgotten \\endgroup.\n\nProject files:\n- main.tex\n- testclass.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Preamble\n2: \\documentclass[optA=false]{testclass}\n3: \n4: % Document\n5: \\begin{document}\n6: \n7: \\begin{frame}{Works fine.}\n8: \\test\n9: \\end{frame}\n10: \n11: \\begin{frame}{Has an error.}\n12: \\ifMY@optA\n13: true\n14: \\else\n15: false\n16: \\fi\n17: \\end{frame}\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\n\\end{frame}\n \nI'm ignoring this; it doesn't match any \\if.\n\n[2\n\n] [3]\n\\tf@nav=\\write6\n\\openout6 = `main.nav'.\n\n\\tf@toc=\\write7\n\\openout7 = `main.toc'.\n\n\\tf@snm=\\write8\n\\openout8 = `main.snm'.\n\n (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 21806 strings out of 467099\n 419422 string characters out of 5408265\n 831988 words of memory out of 5000000\n 50732 multiletter control sequences out of 15000+600000\n 629233 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 142i,14n,137p,381b,581s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (3 pages, 23434 bytes).\nPDF statistics:\n 105 PDF objects out of 1000 (max. 8388607)\n 89 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/703023", "answer_url": "https://tex.stackexchange.com/a/703028", "question_author": {"user_id": 283228, "name": "lwashington27", "url": "https://tex.stackexchange.com/users/283228"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 267375, "name": "Tom", "url": "https://tex.stackexchange.com/users/267375"}} {"bib": false, "lane": "project", "file_edits": [{"file": "suave.sty", "search": "\\DeclareOption{imagem}{\\@loadgraphicxtrue}\n\\newif\\if@loadmate\n\\DeclareOption{mat}{\\@loadmatetrue}\n\\ProcessOptions\\relax", "replace": "\\DeclareOption{imagem}{\\@loadgraphicxtrue}\\ProcessOptions", "type": "real"}, {"file": "suave.sty", "search": "\n\\if@loadmate", "replace": "\n\\newif\\if@loadmate\n\\DeclareOption{mat}{\\@loadmatetrue}\\ProcessOptions\n\\if@loadmate", "type": "real"}, {"file": "suave.sty", "search": " \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}}%", "replace": " \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}", "type": "real"}], "reported_file": "suave.sty", "fix_files": ["suave.sty"], "single_shot_visible": false, "error_lines": [{"line": 6, "text": "LaTeX Error: Unknown option `mat' for package `suave'.", "file": "suave.sty", "fileLabel": "suave.sty"}, {"line": 14, "text": "LaTeX Error: Unknown option `imagem' for package `suave'.", "file": "main.tex", "fileLabel": null}, {"line": 3, "text": "File ended while scanning use of \\@argdef.", "file": "main.tex", "fileLabel": null}], "log_tail": "for U+msa on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsa.fd\nFile: umsa.fd 2013/01/14 v3.01 AMS symbols A\n)\nLaTeX Font Info: Trying to load font information for U+msb on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsb.fd\nFile: umsb.fd 2013/01/14 v3.01 AMS symbols B\n)\n\\tf@thm=\\write3\n\\openout3 = `main.thm'.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred when \\ifx on line 3 was incomplete) \nHere is how much of TeX's memory you used:\n 3708 strings out of 467099\n 55322 string characters out of 5408265\n 458635 words of memory out of 5000000\n 33001 multiletter control sequences out of 15000+600000\n 630078 words of font info for 51 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 72i,5n,79p,271b,130s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 33551 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `suave.sty` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- suave.sty line 6: LaTeX Error: Unknown option `mat' for package `suave'.\n- line 14: LaTeX Error: Unknown option `imagem' for package `suave'.\n- line 3: File ended while scanning use of \\@argdef.\n\nProject files:\n- main.tex\n- suave.sty\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,10pt]{report}\n2: \\usepackage[mat,imagem]{suave}\n3: \\begin{document}\n4: Você não gosta de mim, mas sua filha gosta.\n5: \\[\n6: \\varphi: \\mathcal{A}/Ker(f) \\longrightarrow \\mathcal{B}.\n7: \\]\n8: \\end{document}\n9: \n```\n\nCurrent content of `suave.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[1995/12/01]\n2: \\ProvidesPackage{suave}[2016/11/11 v1. Pacote de facilidades]\n3: \n4: \\newif\\if@loadgraphicx\n5: \\DeclareOption{imagem}{\\@loadgraphicxtrue}\\ProcessOptions\n6: \\if@loadgraphicx\n7: \\RequirePackage[pdftex]{graphicx}%\n8: \\newcommand{\\imagem}[2][]{\\includegraphics[#1]{#2}}%\n9: \\newcommand{\\imagens}[2][]{\\includegraphics[#1]{./Imagens/#2}}%\n10: \\fi\n11: \n12: \\newif\\if@loadmate\n13: \\DeclareOption{mat}{\\@loadmatetrue}\\ProcessOptions\n14: \\if@loadmate\n15: \\RequirePackage{amsmath} \\RequirePackage{wasysym}\n16: \\RequirePackage{amsfonts} \\RequirePackage{amssymb}\n17: \\newcommand\\hmmax{0} % default 3\n18: \\newcommand\\bmmax{0} % default 4\n19: \\RequirePackage[amsmath]{ntheorem}\n20: \\theoremheaderfont{\\normalfont\\bfseries\\sffamily}\n21: \\theorembodyfont{\\itshape} \\theoremindent 0cm\n22: \\theoremseparator{:}\n23: \\newtheorem{teorema}{Teorema}[chapter]\n24: \\newtheorem{defi}{Definição}[chapter]\n25: \\theoremstyle{plain}\n26: \\newcommand{\\rn}[1][n]{\\ensuremath{\\mathbb{R}^{#1}}}\n27: \\newcommand{\\Z}{\\ensuremath{\\mathbb{Z}}}\n28: \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}\n29: \\fi\n30: \\endinput\n31: \n```\n\nCompile log (tail):\n```\nfor U+msa on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsa.fd\nFile: umsa.fd 2013/01/14 v3.01 AMS symbols A\n)\nLaTeX Font Info: Trying to load font information for U+msb on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsb.fd\nFile: umsb.fd 2013/01/14 v3.01 AMS symbols B\n)\n\\tf@thm=\\write3\n\\openout3 = `main.thm'.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred when \\ifx on line 3 was incomplete) \nHere is how much of TeX's memory you used:\n 3708 strings out of 467099\n 55322 string characters out of 5408265\n 458635 words of memory out of 5000000\n 33001 multiletter control sequences out of 15000+600000\n 630078 words of font info for 51 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 72i,5n,79p,271b,130s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 33551 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}\n=======\n \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}}%\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\newif\\if@loadmate\n\\DeclareOption{mat}{\\@loadmatetrue}\\ProcessOptions\n\\if@loadmate\n=======\n\n\\if@loadmate\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\DeclareOption{imagem}{\\@loadgraphicxtrue}\\ProcessOptions\n=======\n\\DeclareOption{imagem}{\\@loadgraphicxtrue}\n\\newif\\if@loadmate\n\\DeclareOption{mat}{\\@loadmatetrue}\n\\ProcessOptions\\relax\n>>>>>>> REPLACE\n", "id": "texse_multi_338871", "doc": "texse_multi/338871", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/338871", "fix_answer": "top", "answer_id": 338874, "answer_score": 7, "fix_source": "snippet", "companions": ["suave.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Unknown option 'X' for package 'X'.", "changed_files": ["suave.sty"], "question_id": 338871, "accepted_answer_id": null, "title": "Problems using \\DeclareOptions to declare more than one package option that loads packages", "tags": ["packages"], "score": 2, "created": "2016-11-13", "error_message": "", "prompt_v1": "The LaTeX file `suave.sty` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- suave.sty line 6: LaTeX Error: Unknown option `mat' for package `suave'.\n- line 14: LaTeX Error: Unknown option `imagem' for package `suave'.\n- line 3: File ended while scanning use of \\@argdef.\n\nProject files:\n- main.tex\n- suave.sty\n\nCurrent content of `suave.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[1995/12/01]\n2: \\ProvidesPackage{suave}[2016/11/11 v1. Pacote de facilidades]\n3: \n4: \\newif\\if@loadgraphicx\n5: \\DeclareOption{imagem}{\\@loadgraphicxtrue}\\ProcessOptions\n6: \\if@loadgraphicx\n7: \\RequirePackage[pdftex]{graphicx}%\n8: \\newcommand{\\imagem}[2][]{\\includegraphics[#1]{#2}}%\n9: \\newcommand{\\imagens}[2][]{\\includegraphics[#1]{./Imagens/#2}}%\n10: \\fi\n11: \n12: \\newif\\if@loadmate\n13: \\DeclareOption{mat}{\\@loadmatetrue}\\ProcessOptions\n14: \\if@loadmate\n15: \\RequirePackage{amsmath} \\RequirePackage{wasysym}\n16: \\RequirePackage{amsfonts} \\RequirePackage{amssymb}\n17: \\newcommand\\hmmax{0} % default 3\n18: \\newcommand\\bmmax{0} % default 4\n19: \\RequirePackage[amsmath]{ntheorem}\n20: \\theoremheaderfont{\\normalfont\\bfseries\\sffamily}\n21: \\theorembodyfont{\\itshape} \\theoremindent 0cm\n22: \\theoremseparator{:}\n23: \\newtheorem{teorema}{Teorema}[chapter]\n24: \\newtheorem{defi}{Definição}[chapter]\n25: \\theoremstyle{plain}\n26: \\newcommand{\\rn}[1][n]{\\ensuremath{\\mathbb{R}^{#1}}}\n27: \\newcommand{\\Z}{\\ensuremath{\\mathbb{Z}}}\n28: \\newcommand{\\anel}[1]{\\ensuremath{(#1,+,\\cdot)}\n29: \\fi\n30: \\endinput\n31: \n```\n\nCompile log (tail):\n```\nfor U+msa on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsa.fd\nFile: umsa.fd 2013/01/14 v3.01 AMS symbols A\n)\nLaTeX Font Info: Trying to load font information for U+msb on input line 5.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/amsfonts/umsb.fd\nFile: umsb.fd 2013/01/14 v3.01 AMS symbols B\n)\n\\tf@thm=\\write3\n\\openout3 = `main.thm'.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred when \\ifx on line 3 was incomplete) \nHere is how much of TeX's memory you used:\n 3708 strings out of 467099\n 55322 string characters out of 5408265\n 458635 words of memory out of 5000000\n 33001 multiletter control sequences out of 15000+600000\n 630078 words of font info for 51 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 72i,5n,79p,271b,130s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 33551 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/338871", "answer_url": "https://tex.stackexchange.com/a/338874", "question_author": {"user_id": 118627, "name": "Benaia Sobreira", "url": "https://tex.stackexchange.com/users/118627"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "sample.cls", "search": "\\DeclareOption*{%\n \\ClassWarning{sample}{No options permitted}%", "replace": "\\DeclareOption*{\n \\ClassWarning{sample}{No options permitted}", "type": "real"}, {"file": "sample.cls", "search": "\\newenvironment{abstractpage}\n {%", "replace": "\\newenvironment{abstractpage}{\n {", "type": "real"}, {"file": "sample.cls", "search": " \\bfseries\n {\\Large \\MakeUppercase{\\abstractname} \\\\[\\bigskipamount]}\n {\\large \\@title\\\\[\\bigskipamount]}\n \\@author", "replace": " \\fontseries{bx}\n \\selectfont\n \\Large ABSTRACT \\\\\n \\hfill \\\\\n \\large \\@title\\\\\n \\hfill \\\\\n \\normalsize \\@author", "type": "real"}, {"file": "sample.cls", "search": " \\quotation\\noindent\\ignorespaces\n }\n {%", "replace": " \\quotation\\noindent\n }\n {", "type": "real"}, {"file": "sample.cls", "search": " \\vfill\n }", "replace": " \\vfill\n }\n}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["sample.cls"], "single_shot_visible": false, "error_lines": [{"line": 2, "text": "File ended while scanning use of \\@newenv.", "file": "main.tex", "fileLabel": null}, {"line": 7, "text": "LaTeX Error: Environment abstractpage undefined.", "file": "main.tex", "fileLabel": null}, {"line": 9, "text": "LaTeX Error: \\begin{document} ended by \\end{abstractpage}.", "file": "main.tex", "fileLabel": null}], "log_tail": " \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{abstractpage}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.9 \\end{abstractpage}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 901 strings out of 467099\n 19154 string characters out of 5408265\n 513347 words of memory out of 5000000\n 30299 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 73i,5n,77p,228b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18357 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: File ended while scanning use of \\@newenv.\n- line 7: LaTeX Error: Environment abstractpage undefined.\n- line 9: LaTeX Error: \\begin{document} ended by \\end{abstractpage}.\n\nProject files:\n- main.tex\n- sample.cls\n\nOther project files (edit them with ):\n\n`sample.cls` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}\n2: \\ProvidesClass{sample}[2016/01/29 Sample]\n3: \n4: \n5: \\DeclareOption*{%\n6: \\ClassWarning{sample}{No options permitted}%\n7: }\n8: \n9: \\ProcessOptions\\relax\n10: \\LoadClass{report}\n11: \n12: \\newenvironment{abstractpage}\n13: {%\n14: \\begin{center}\n15: %set the default font style to bold face extended for the abstract page\n16: \\bfseries\n17: {\\Large \\MakeUppercase{\\abstractname} \\\\[\\bigskipamount]}\n18: {\\large \\@title\\\\[\\bigskipamount]}\n19: \\@author\n20: \\end{center}\n21: \\vfill\n22: \\quotation\\noindent\\ignorespaces\n23: }\n24: {%\n25: \\endquotation\n26: \\vfill\n27: }\n28: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{sample}\n2: \\usepackage{lipsum}\n3: \n4: \\begin{document}\n5: \\author{Andrew}\n6: \\title{Hello World}\n7: \\begin{abstractpage}\n8: \\lipsum[1]\n9: \\end{abstractpage}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{abstractpage}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.9 \\end{abstractpage}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 901 strings out of 467099\n 19154 string characters out of 5408265\n 513347 words of memory out of 5000000\n 30299 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 73i,5n,77p,228b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18357 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\vfill\n }\n}\n=======\n \\vfill\n }\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\quotation\\noindent\n }\n {\n=======\n \\quotation\\noindent\\ignorespaces\n }\n {%\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\fontseries{bx}\n \\selectfont\n \\Large ABSTRACT \\\\\n \\hfill \\\\\n \\large \\@title\\\\\n \\hfill \\\\\n \\normalsize \\@author\n=======\n \\bfseries\n {\\Large \\MakeUppercase{\\abstractname} \\\\[\\bigskipamount]}\n {\\large \\@title\\\\[\\bigskipamount]}\n \\@author\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\newenvironment{abstractpage}{\n {\n=======\n\\newenvironment{abstractpage}\n {%\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\DeclareOption*{\n \\ClassWarning{sample}{No options permitted}\n=======\n\\DeclareOption*{%\n \\ClassWarning{sample}{No options permitted}%\n>>>>>>> REPLACE\n", "id": "texse_multi_290119", "doc": "texse_multi/290119", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/290119", "fix_answer": "accepted", "answer_id": 290139, "answer_score": 4, "fix_source": "snippet", "companions": ["sample.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["sample.cls"], "question_id": 290119, "accepted_answer_id": 290139, "title": "Problems with creating abstract in custom class", "tags": ["pdftex", "environments", "document-classes", "abstract"], "score": 1, "created": "2016-01-29", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: File ended while scanning use of \\@newenv.\n- line 7: LaTeX Error: Environment abstractpage undefined.\n- line 9: LaTeX Error: \\begin{document} ended by \\end{abstractpage}.\n\nProject files:\n- main.tex\n- sample.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{sample}\n2: \\usepackage{lipsum}\n3: \n4: \\begin{document}\n5: \\author{Andrew}\n6: \\title{Hello World}\n7: \\begin{abstractpage}\n8: \\lipsum[1]\n9: \\end{abstractpage}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{abstractpage}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.9 \\end{abstractpage}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 901 strings out of 467099\n 19154 string characters out of 5408265\n 513347 words of memory out of 5000000\n 30299 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 73i,5n,77p,228b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18357 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/290119", "answer_url": "https://tex.stackexchange.com/a/290139", "question_author": {"user_id": 88442, "name": "Andrew", "url": "https://tex.stackexchange.com/users/88442"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": false, "lane": "project", "file_edits": [{"file": "sample.cls", "search": "\\NeedsTeXFormat{LaTeX2e}\n\\ProvidesClass{sample}[Sample class]\n%-------------------------- initial code -----------------------\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}} % +label[vrb:test1]\n%-------------------------- initial code -----------------------\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}\n%-------------------------- execution ---------------------\n\\ProcessOptions\\relax\n\\LoadClass[a4paper,openright]{report} % +label[vrb:test2]\n\\endinput", "replace": "\\fvset{frame=none,numbers=left,numbersep=3pt,firstline=1,lastline=20}\n\\VerbatimInput[commandchars=+\\[\\]]{sample.cls}", "type": "real"}], "reported_file": "sample.cls", "fix_files": ["sample.cls"], "single_shot_visible": false, "error_lines": [{"line": 1, "text": "Undefined control sequence.", "file": "sample.cls", "fileLabel": "sample.cls"}, {"line": 1, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}, {"line": 2, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 4, "text": "LaTeX Error: The font size command \\normalsize is not defined:", "file": "main.tex", "fileLabel": null}, {"line": 7, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 8, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 13, "text": "LaTeX Error: The font size command \\normalsize is not defined:", "file": "main.tex", "fileLabel": null}], "log_tail": "file.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.13 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 676 strings out of 467099\n 13179 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30085 multiletter control sequences out of 15000+600000\n 628197 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,146b,201s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>\nOutput written on main.pdf (1 page, 41810 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `sample.cls` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- sample.cls line 1: Undefined control sequence.\n- line 1: LaTeX Error: Missing \\begin{document}.\n- line 2: Undefined control sequence.\n- line 4: LaTeX Error: The font size command \\normalsize is not defined:\n- line 7: Undefined control sequence.\n- line 8: Undefined control sequence.\n- line 13: LaTeX Error: The font size command \\normalsize is not defined:\n\nProject files:\n- main.tex\n- sample.cls\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{sample}\n2: \\usepackage{fancyvrb}\n3: \n4: \\begin{document}\n5: \n6: \\fvset{frame=none,numbers=left,numbersep=3pt,firstline=1,lastline=20}\n7: \\VerbatimInput[commandchars=+\\[\\]]{sample.cls}\n8: For example, the block between line (\\ref{vrb:test1}) and line (\\ref{vrb:test2}) is\n9: what I am refering to. Notice that the label format I used in sample.cls are +\n10: label[vrb:test1] and + label[vrb:test2], which are not seen here due to being two\n11: control sequences in Verbertim. environment.\n12: \n13: \\end{document}\n14: \n```\n\nCurrent content of `sample.cls` (full file, line-numbered):\n```\n1: \\fvset{frame=none,numbers=left,numbersep=3pt,firstline=1,lastline=20}\n2: \\VerbatimInput[commandchars=+\\[\\]]{sample.cls}\n3: \n```\n\nCompile log (tail):\n```\nfile.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.13 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 676 strings out of 467099\n 13179 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30085 multiletter control sequences out of 15000+600000\n 628197 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,146b,201s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>\nOutput written on main.pdf (1 page, 41810 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\fvset{frame=none,numbers=left,numbersep=3pt,firstline=1,lastline=20}\n\\VerbatimInput[commandchars=+\\[\\]]{sample.cls}\n=======\n\\NeedsTeXFormat{LaTeX2e}\n\\ProvidesClass{sample}[Sample class]\n%-------------------------- initial code -----------------------\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}} % +label[vrb:test1]\n%-------------------------- initial code -----------------------\n\\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{report}}\n%-------------------------- execution ---------------------\n\\ProcessOptions\\relax\n\\LoadClass[a4paper,openright]{report} % +label[vrb:test2]\n\\endinput\n>>>>>>> REPLACE\n", "id": "texse_multi_129734", "doc": "texse_multi/129734", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/129734", "fix_answer": "accepted", "answer_id": 129768, "answer_score": 1, "fix_source": "snippet", "companions": ["sample.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["sample.cls"], "question_id": 129734, "accepted_answer_id": 129768, "title": "LaTeX complaining commands in Verbatim", "tags": ["cross-referencing", "verbatim"], "score": 2, "created": "2013-08-23", "error_message": "", "prompt_v1": "The LaTeX file `sample.cls` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- sample.cls line 1: Undefined control sequence.\n- line 1: LaTeX Error: Missing \\begin{document}.\n- line 2: Undefined control sequence.\n- line 4: LaTeX Error: The font size command \\normalsize is not defined:\n- line 7: Undefined control sequence.\n- line 8: Undefined control sequence.\n- line 13: LaTeX Error: The font size command \\normalsize is not defined:\n\nProject files:\n- main.tex\n- sample.cls\n\nCurrent content of `sample.cls` (full file, line-numbered):\n```\n1: \\fvset{frame=none,numbers=left,numbersep=3pt,firstline=1,lastline=20}\n2: \\VerbatimInput[commandchars=+\\[\\]]{sample.cls}\n3: \n```\n\nCompile log (tail):\n```\nfile.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.13 \\end{document}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 676 strings out of 467099\n 13179 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30085 multiletter control sequences out of 15000+600000\n 628197 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,146b,201s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>\nOutput written on main.pdf (1 page, 41810 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/129734", "answer_url": "https://tex.stackexchange.com/a/129768", "question_author": {"user_id": 34618, "name": "Jesse", "url": "https://tex.stackexchange.com/users/34618"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\newpage\n\\shorthandoff{~} % <- turns off the ~ short hand\n\\bibliography{sources}", "replace": "\\newpage\n\\bibliography{sources}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 8, "text": "Missing \\endcsname inserted.", "file": null, "fileLabel": "main.bbl"}, {"line": 8, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "a \\csname.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[2\n\n] (./main.aux\nLaTeX Info: Redefining \\. on input line 11.\nLaTeX Info: Redefining \\% on input line 11.\nPackage cleveref Info: loaded `spanish' language definitions on input line 11.\n\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 15112 strings out of 467099\n 253203 string characters out of 5408265\n 744808 words of memory out of 5000000\n 44264 multiletter control sequences out of 15000+600000\n 629635 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,249b,626s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (3 pages, 38191 bytes).\nPDF statistics:\n 37 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 8: Missing \\endcsname inserted.\n- line 8: Missing \\endcsname inserted.\n\nProject files:\n- main.tex\n- sources.bib\n\nOther project files (edit them with ):\n\n`sources.bib` (full file, line-numbered):\n```\n1: @article{llavearticulo,\n2: author = {Arthur B Cummings and David Eftekhary and Frank G House},\n3: title = {The accurate determination of college students\n4: coefficients of friction},\n5: journal = {Journal of Sketchy Physics},\n6: volume = {13},\n7: year = {2003},\n8: number = {2},\n9: pages = {46--129}\n10: }\n11: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: \n3: \\usepackage[a4paper, margin=2.54cm, head=1.27cm, foot=1.27cm]{geometry}\n4: \\usepackage[spanish]{babel}\n5: \\usepackage{natbib}\n6: \\usepackage{fancyhdr}\n7: \\usepackage{import}\n8: \\usepackage{hyperref}\n9: \\usepackage{xcolor}\n10: \\usepackage[table]{xcolor}\n11: \\usepackage{pdflscape}\n12: \\usepackage{ulem}\n13: \\usepackage{amsmath}\n14: \\usepackage{multicol}\n15: \\usepackage{tabularx}\n16: \\usepackage{multirow}\n17: \\usepackage{cellspace}\n18: \\usepackage{graphicx}\n19: \\usepackage[spanish]{cleveref}\n20: \\usepackage{url}\n21: \n22: \\graphicspath{{./images}}\n23: \n24: \\newcommand{\\mychapter}[2]{\n25: %\\setcounter{chapter}{#1}\n26: %\\setcounter{section}{0}\n27: \\chapter*{#1 #2}\n28: \\addcontentsline{toc}{chapter}{#1 #2}\n29: \\refstepcounter{chapter}\n30: }\n31: \n32: \\fancypagestyle{plain}{\n33: \\fancyhf{}\n34: \\renewcommand{\\headrulewidth}{0pt}\n35: \\renewcommand{\\footrulewidth}{0pt}\n36: }\n37: \\pagestyle{plain}\n38: \n39: \\renewcommand{\\contentsname}{Índice general}\n40: \\renewcommand{\\listfigurename}{Índice de cuadros}\n41: \\renewcommand{\\listtablename}{Índice de figuras}\n42: \n43: \\title{My title}\n44: \\author{My myself}\n45: \\date{}\n46: \n47: \\begin{document}\n48: \n49: \\maketitle\n50: \n51: Otras formas de citas\n52: \\begin{itemize}\n53: \\item \\cite[p.12]{llavearticulo}\n54: \\item \\cite[e.g.][p.12]{llavearticulo}\n55: \\item \\cite[e.g.][]{llavearticulo}\n56: \\item \\cite[][]{llavearticulo}\n57: \\item \\citep{llavearticulo}\n58: \\item \\cite*{llavearticulo}\n59: \\item \\citep*{llavearticulo}\n60: \\end{itemize}\n61: \n62: \n63: \\newpage\n64: \\bibliography{sources}\n65: \\bibliographystyle{chicago}\n66: \n67: \\end{document}\n68: \n```\n\nCompile log (tail):\n```\na \\csname.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[2\n\n] (./main.aux\nLaTeX Info: Redefining \\. on input line 11.\nLaTeX Info: Redefining \\% on input line 11.\nPackage cleveref Info: loaded `spanish' language definitions on input line 11.\n\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 15112 strings out of 467099\n 253203 string characters out of 5408265\n 744808 words of memory out of 5000000\n 44264 multiletter control sequences out of 15000+600000\n 629635 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,249b,626s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (3 pages, 38191 bytes).\nPDF statistics:\n 37 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\newpage\n\\bibliography{sources}\n=======\n\\newpage\n\\shorthandoff{~} % <- turns off the ~ short hand\n\\bibliography{sources}\n>>>>>>> REPLACE\n", "id": "texse_multi_715300", "doc": "texse_multi/715300", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/715300", "fix_answer": "accepted", "answer_id": 715303, "answer_score": 0, "fix_source": "snippet", "companions": ["sources.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing \\CS inserted.", "changed_files": ["main.tex"], "question_id": 715300, "accepted_answer_id": 715303, "title": "Bibtex Latex-Workshop Missing endcsname inserted", "tags": ["bibtex", "texlive", "vscode", "latex-workshop"], "score": 0, "created": "2024-04-11", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 8: Missing \\endcsname inserted.\n- line 8: Missing \\endcsname inserted.\n\nProject files:\n- main.tex\n- sources.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: \n3: \\usepackage[a4paper, margin=2.54cm, head=1.27cm, foot=1.27cm]{geometry}\n4: \\usepackage[spanish]{babel}\n5: \\usepackage{natbib}\n6: \\usepackage{fancyhdr}\n7: \\usepackage{import}\n8: \\usepackage{hyperref}\n9: \\usepackage{xcolor}\n10: \\usepackage[table]{xcolor}\n11: \\usepackage{pdflscape}\n12: \\usepackage{ulem}\n13: \\usepackage{amsmath}\n14: \\usepackage{multicol}\n15: \\usepackage{tabularx}\n16: \\usepackage{multirow}\n17: \\usepackage{cellspace}\n18: \\usepackage{graphicx}\n19: \\usepackage[spanish]{cleveref}\n20: \\usepackage{url}\n21: \n22: \\graphicspath{{./images}}\n23: \n24: \\newcommand{\\mychapter}[2]{\n25: %\\setcounter{chapter}{#1}\n26: %\\setcounter{section}{0}\n27: \\chapter*{#1 #2}\n28: \\addcontentsline{toc}{chapter}{#1 #2}\n29: \\refstepcounter{chapter}\n30: }\n31: \n32: \\fancypagestyle{plain}{\n33: \\fancyhf{}\n34: \\renewcommand{\\headrulewidth}{0pt}\n35: \\renewcommand{\\footrulewidth}{0pt}\n36: }\n37: \\pagestyle{plain}\n38: \n39: \\renewcommand{\\contentsname}{Índice general}\n40: \\renewcommand{\\listfigurename}{Índice de cuadros}\n41: \\renewcommand{\\listtablename}{Índice de figuras}\n42: \n43: \\title{My title}\n44: \\author{My myself}\n45: \\date{}\n46: \n47: \\begin{document}\n48: \n49: \\maketitle\n50: \n51: Otras formas de citas\n52: \\begin{itemize}\n53: \\item \\cite[p.12]{llavearticulo}\n54: \\item \\cite[e.g.][p.12]{llavearticulo}\n55: \\item \\cite[e.g.][]{llavearticulo}\n56: \\item \\cite[][]{llavearticulo}\n57: \\item \\citep{llavearticulo}\n58: \\item \\cite*{llavearticulo}\n59: \\item \\citep*{llavearticulo}\n60: \\end{itemize}\n61: \n62: \n63: \\newpage\n64: \\bibliography{sources}\n65: \\bibliographystyle{chicago}\n66: \n67: \\end{document}\n68: \n```\n\nCompile log (tail):\n```\na \\csname.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[2\n\n] (./main.aux\nLaTeX Info: Redefining \\. on input line 11.\nLaTeX Info: Redefining \\% on input line 11.\nPackage cleveref Info: loaded `spanish' language definitions on input line 11.\n\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 15112 strings out of 467099\n 253203 string characters out of 5408265\n 744808 words of memory out of 5000000\n 44264 multiletter control sequences out of 15000+600000\n 629635 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 87i,11n,93p,249b,626s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (3 pages, 38191 bytes).\nPDF statistics:\n 37 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/715300", "answer_url": "https://tex.stackexchange.com/a/715303", "question_author": {"user_id": 318304, "name": "Jesus Urquizo", "url": "https://tex.stackexchange.com/users/318304"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 119, "name": "Willie Wong", "url": "https://tex.stackexchange.com/users/119"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\newif\\ifmyfileexists\n\\makeatletter\n\\let\\originput\\@@input\n\\makeatother\n\\begin{document}\n\\IfFileExists{inp}{\\myfileexiststrue}{\\myfileexistsfalse}%\n \\begin{tabular}{ll}\n \\ifmyfileexists\n \\originput inp\n \\fi", "replace": "\\begin{document}\n \\begin{tabular}{ll}\n \\InputIfFileExists{inp.tex}{}{}", "type": "real"}], "reported_file": "inp.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 1, "text": "Misplaced \\noalign.", "file": "inp.tex", "fileLabel": "inp.tex"}, {"line": 2, "text": "Missing } inserted.", "file": "inp.tex", "fileLabel": "inp.tex"}, {"line": 2, "text": "Missing } inserted.", "file": "main.tex", "fileLabel": null}, {"line": 3, "text": "Misplaced \\cr.", "file": "main.tex", "fileLabel": null}, {"line": 4, "text": "Misplaced \\cr.", "file": "main.tex", "fileLabel": null}, {"line": 7, "text": "Misplaced \\crcr.", "file": "main.tex", "fileLabel": null}], "log_tail": "es, and you\nmight try typing `S' now just to see what is salvageable.\n\n! Extra }, or forgotten \\endgroup.\n\\endtabular ->\\crcr \\egroup \\egroup \\egroup \n \nl.7 \\end{tabular}\n \nI've deleted a group-closing symbol because it seems to be\nspurious, as in `$x}$'. But perhaps the } is legitimate and\nyou forgot something else, as in `\\hbox{$x}'. In such cases\nthe way to recover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n[1\n\n\nNon-PDF special ignored!\n papersize=345.0pt,21.46664pt\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1156 strings out of 467099\n 21498 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30535 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,71p,213b,115s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11066 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `inp.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- inp.tex line 1: Misplaced \\noalign.\n- inp.tex line 2: Missing } inserted.\n- line 2: Missing } inserted.\n- line 3: Misplaced \\cr.\n- line 4: Misplaced \\cr.\n- line 7: Misplaced \\crcr.\n\nProject files:\n- inp.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass{standalone}\n2: \\usepackage{booktabs}\n3: \n4: \\newif\\ifmyfileexists\n5: \\makeatletter\n6: \\let\\originput\\@@input\n7: \\makeatother\n8: \\begin{document}\n9: \\IfFileExists{inp}{\\myfileexiststrue}{\\myfileexistsfalse}%\n10: \\begin{tabular}{ll}\n11: \\ifmyfileexists\n12: \\originput inp\n13: \\fi\n14: \\end{tabular}\n15: \\end{document}\n16: \n```\n\nCurrent content of `inp.tex` (full file, line-numbered):\n```\n1: \\toprule\n2: a & b \\\\\n3: c & d \\\\\n4: \\bottomrule\n5: \n```\n\nCompile log (tail):\n```\nes, and you\nmight try typing `S' now just to see what is salvageable.\n\n! Extra }, or forgotten \\endgroup.\n\\endtabular ->\\crcr \\egroup \\egroup \\egroup \n \nl.7 \\end{tabular}\n \nI've deleted a group-closing symbol because it seems to be\nspurious, as in `$x}$'. But perhaps the } is legitimate and\nyou forgot something else, as in `\\hbox{$x}'. In such cases\nthe way to recover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n[1\n\n\nNon-PDF special ignored!\n papersize=345.0pt,21.46664pt\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1156 strings out of 467099\n 21498 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30535 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,71p,213b,115s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11066 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\begin{document}\n \\begin{tabular}{ll}\n \\InputIfFileExists{inp.tex}{}{}\n=======\n\\newif\\ifmyfileexists\n\\makeatletter\n\\let\\originput\\@@input\n\\makeatother\n\\begin{document}\n\\IfFileExists{inp}{\\myfileexiststrue}{\\myfileexistsfalse}%\n \\begin{tabular}{ll}\n \\ifmyfileexists\n \\originput inp\n \\fi\n>>>>>>> REPLACE\n", "id": "texse_multi_50820", "doc": "texse_multi/50820", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/50820", "fix_answer": "accepted", "answer_id": 50822, "answer_score": 17, "fix_source": "answer_doc", "companions": ["inp.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "Misplaced \\CS.", "changed_files": ["main.tex"], "question_id": 50820, "accepted_answer_id": 50822, "title": "Expandable version of \\InputIfFileExists or \\IfFileExists", "tags": ["tables", "expansion", "input"], "score": 22, "created": "2012-04-05", "error_message": "Missing \\endcsname inserted.", "prompt_v1": "The LaTeX file `inp.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- inp.tex line 1: Misplaced \\noalign.\n- inp.tex line 2: Missing } inserted.\n- line 2: Missing } inserted.\n- line 3: Misplaced \\cr.\n- line 4: Misplaced \\cr.\n- line 7: Misplaced \\crcr.\n\nProject files:\n- inp.tex\n- main.tex\n\nCurrent content of `inp.tex` (full file, line-numbered):\n```\n1: \\toprule\n2: a & b \\\\\n3: c & d \\\\\n4: \\bottomrule\n5: \n```\n\nCompile log (tail):\n```\nes, and you\nmight try typing `S' now just to see what is salvageable.\n\n! Extra }, or forgotten \\endgroup.\n\\endtabular ->\\crcr \\egroup \\egroup \\egroup \n \nl.7 \\end{tabular}\n \nI've deleted a group-closing symbol because it seems to be\nspurious, as in `$x}$'. But perhaps the } is legitimate and\nyou forgot something else, as in `\\hbox{$x}'. In such cases\nthe way to recover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n[1\n\n\nNon-PDF special ignored!\n papersize=345.0pt,21.46664pt\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1156 strings out of 467099\n 21498 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30535 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,71p,213b,115s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11066 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/50820", "answer_url": "https://tex.stackexchange.com/a/50822", "question_author": {"user_id": 8057, "name": "krlmlr", "url": "https://tex.stackexchange.com/users/8057"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 2975, "name": "Martin Scharrer", "url": "https://tex.stackexchange.com/users/2975"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "% save a copy of \\@xfloat\n\\makeatletter\\let\\latex@xfloat\\@xfloat\\makeatother\n\\usepackage{killer}\n% redefine \\@xfloat to have the intended behavior\n\\usepackage{etoolbox}\n\\makeatletter\n\\let\\@xfloat\\latex@xfloat\n\\apptocmd{\\@xfloat}{\\linespread{1}\\normalsize}{}{}\n\\makeatother", "replace": "\\usepackage{killer}", "type": "real"}, {"file": "main.tex", "search": " \\begin{figure}", "replace": " \\begin{figure}[H]", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 12, "text": "Too many }'s.", "file": "main.tex", "fileLabel": null}], "log_tail": "end{figure}\n \nYou've closed more groups than you opened.\nSuch booboos are generally harmless, so keep going.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{figure}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.12 \\end{figure}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n! Extra \\endgroup.\n\\end ...end#1\\endcsname \\@checkend {#1}\\endgroup \n \\UseHook {env/#1/after}\\if...\nl.12 \\end{figure}\n \nThings are pretty mixed up, but I think the worst is over.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1396 strings out of 467099\n 23011 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30767 multiletter control sequences out of 15000+600000\n 628019 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,200b,212s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 1 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 12: Too many }'s.\n\nProject files:\n- killer.sty\n- main.tex\n\nOther project files (edit them with ):\n\n`killer.sty` (full file, line-numbered):\n```\n1: \\def\\@xfloat#1[#2]{\\ifhmode \\@bsphack\\@floatpenalty -\\@Mii\\else\n2: \\@floatpenalty-\\@Miii\\fi\\def\\@captype{#1}\\ifinner\n3: \\@parmoderr\\@floatpenalty\\z@\n4: \\else\\@next\\@currbox\\@freelist{\\@tempcnta\\csname ftype@#1\\endcsname\n5: \\multiply\\@tempcnta\\@xxxii\\advance\\@tempcnta\\sixt@@n\n6: \\@tfor \\@tempa :=#2\\do\n7: {\\if\\@tempa h\\advance\\@tempcnta \\@ne\\fi\n8: \\if\\@tempa t\\advance\\@tempcnta \\tw@\\fi\n9: \\if\\@tempa b\\advance\\@tempcnta 4\\relax\\fi\n10: \\if\\@tempa p\\advance\\@tempcnta 8\\relax\\fi\n11: }\\global\\count\\@currbox\\@tempcnta}\\@fltovf\\fi\n12: \\global\\setbox\\@currbox\\vbox\\bgroup\n13: \\def\\baselinestretch{1}\\@normalsize\n14: \\boxmaxdepth\\z@\n15: \\hsize\\columnwidth \\@parboxrestore\n16: }\n17: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper,twoside,openright]{report} %\n2: %====\n3: \\usepackage{graphicx}\n4: \\usepackage{killer}\n5: \\usepackage{color}%this works if this line is commented\n6: %====\n7: \\begin{document}\n8: \\begin{figure}[H]\n9: \\centering\\includegraphics[width=1\\columnwidth]{your.pdf}\n10: \\caption[]{Schematic representation}\n11: \\label{fig:yourFig}\n12: \\end{figure}\n13: \\end{document}\n14: \n```\n\nCompile log (tail):\n```\nend{figure}\n \nYou've closed more groups than you opened.\nSuch booboos are generally harmless, so keep going.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{figure}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.12 \\end{figure}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n! Extra \\endgroup.\n\\end ...end#1\\endcsname \\@checkend {#1}\\endgroup \n \\UseHook {env/#1/after}\\if...\nl.12 \\end{figure}\n \nThings are pretty mixed up, but I think the worst is over.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1396 strings out of 467099\n 23011 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30767 multiletter control sequences out of 15000+600000\n 628019 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,200b,212s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 1 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\begin{figure}[H]\n=======\n \\begin{figure}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage{killer}\n=======\n% save a copy of \\@xfloat\n\\makeatletter\\let\\latex@xfloat\\@xfloat\\makeatother\n\\usepackage{killer}\n% redefine \\@xfloat to have the intended behavior\n\\usepackage{etoolbox}\n\\makeatletter\n\\let\\@xfloat\\latex@xfloat\n\\apptocmd{\\@xfloat}{\\linespread{1}\\normalsize}{}{}\n\\makeatother\n>>>>>>> REPLACE\n", "id": "texse_multi_215194", "doc": "texse_multi/215194", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/215194", "fix_answer": "accepted", "answer_id": 215206, "answer_score": 2, "fix_source": "answer_doc", "companions": ["killer.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "Too many }'s.", "changed_files": ["main.tex"], "question_id": 215194, "accepted_answer_id": 215206, "title": "Incompatible color package and defining a xfloat environment -> \" Too many }'s\"", "tags": ["floats", "color", "incompatibility"], "score": 5, "created": "2014-12-03", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 12: Too many }'s.\n\nProject files:\n- killer.sty\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper,twoside,openright]{report} %\n2: %====\n3: \\usepackage{graphicx}\n4: \\usepackage{killer}\n5: \\usepackage{color}%this works if this line is commented\n6: %====\n7: \\begin{document}\n8: \\begin{figure}[H]\n9: \\centering\\includegraphics[width=1\\columnwidth]{your.pdf}\n10: \\caption[]{Schematic representation}\n11: \\label{fig:yourFig}\n12: \\end{figure}\n13: \\end{document}\n14: \n```\n\nCompile log (tail):\n```\nend{figure}\n \nYou've closed more groups than you opened.\nSuch booboos are generally harmless, so keep going.\n\n\n! LaTeX Error: \\begin{document} ended by \\end{figure}.\n\nSee the LaTeX manual or LaTeX Companion for explanation.\nType H for immediate help.\n ... \n \nl.12 \\end{figure}\n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n! Extra \\endgroup.\n\\end ...end#1\\endcsname \\@checkend {#1}\\endgroup \n \\UseHook {env/#1/after}\\if...\nl.12 \\end{figure}\n \nThings are pretty mixed up, but I think the worst is over.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1396 strings out of 467099\n 23011 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30767 multiletter control sequences out of 15000+600000\n 628019 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,200b,212s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 1 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 6 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/215194", "answer_url": "https://tex.stackexchange.com/a/215206", "question_author": {"user_id": 6706, "name": "mikuszefski", "url": "https://tex.stackexchange.com/users/6706"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\moderncvtheme[blue]{classic}\n\\usepackage[utf8]{inputenc}", "replace": "\\moderncvtheme[blue]{classic} % optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 'roman' (for roman fonts, instead of sans serif fonts)\n\\usepackage[utf8]{inputenc} % replace by the encoding you are using", "type": "real"}, {"file": "main.tex", "search": "\\AtBeginDocument{\\recomputelengths}", "replace": "\\AtBeginDocument{\\recomputelengths} % required when changes are made to page layout lengths", "type": "real"}, {"file": "main.tex", "search": "\\usepackage{multibib}\n\\newcites{press}{Press}\n\\newcites{presentations}{Presentations}\n\\newcites{papers}{Papers}", "replace": "% SPLITBIB\n\\usepackage[export]{splitbib} % So I can display publications by categories.\n\\begin{category}{\\subsection{Press}}\n\\SBentries{press1}\n\\end{category}\n\\begin{category}{\\subsection{Presentations}}\n \\SBentries{pres1,pres2}\n\\end{category}\n\\begin{category}{\\subsection{Papers}}\n \\SBentries{paper1,paper2}\n\\end{category}", "type": "real"}, {"file": "main.tex", "search": "\\begin{document}\n\\nocitepress{press1}\n\\nocitepresentations{pres1,pres2}\n\\nocitepapers{paper1,paper2}\n\\maketitle", "replace": "\\begin{document}\n\\maketitle", "type": "real"}, {"file": "main.tex", "search": "\\section{Publications}\n\\bibliographystylepress{plain}\n\\bibliographypress{publications}\n\\bibliographystylepresentations{plain}\n\\bibliographypresentations{publications}\n\\bibliographystylepapers{plain}\n\\bibliographypapers{publications}", "replace": "\\renewcommand{\\listitemsymbol}{-} % change the symbol for lists\n\n\\nocite{*}\n\n%BIBLIOGRAPHY\n\\SBtitlestyle{simple}\n%\\SBsubtitlestyle{none}\n\\bibliographystyle{plain}\n\\bibliography{publications} % 'publications' is the name of a BibTeX file", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 1, "text": "Undefined control sequence.", "file": null, "fileLabel": "main.bbl"}, {"line": 3, "text": "LaTeX Error: Lonely \\item--perhaps a missing list environment.", "file": "main.tex", "fileLabel": null}, {"line": 8, "text": "LaTeX Error: Lonely \\item--perhaps a missing list environment.", "file": "main.tex", "fileLabel": null}, {"line": 13, "text": "LaTeX Error: Lonely \\item--perhaps a missing list environment.", "file": "main.tex", "fileLabel": null}, {"line": 18, "text": "LaTeX Error: Lonely \\item--perhaps a missing list environment.", "file": "main.tex", "fileLabel": null}, {"line": 23, "text": "LaTeX Error: Lonely \\item--perhaps a missing list environment.", "file": "main.tex", "fileLabel": null}, {"line": 41, "text": "Incomplete \\ifx; all text was ignored after line 29.", "file": "main.tex", "fileLabel": null}], "log_tail": "\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! You can't use `\\relax' after \\the.\n \\c@ \n \nl.23 \\bibitem{paper1}\n \nI'm forgetting what you said and using zero instead.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \nl.41 \\bibliography{publications}\n % 'publications' is the name of a BibTe...\nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 27235 strings out of 467099\n 532125 string characters out of 5408265\n 935974 words of memory out of 5000000\n 56122 multiletter control sequences out of 15000+600000\n 640732 words of font info for 87 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 137i,10n,136p,1001b,463s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 1: Undefined control sequence.\n- line 3: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 8: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 13: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 18: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 23: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 41: Incomplete \\ifx; all text was ignored after line 29.\n\nProject files:\n- main.tex\n- publications.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,a4paper]{moderncv}\n2: \\moderncvtheme[blue]{classic} % optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 'roman' (for roman fonts, instead of sans serif fonts)\n3: \\usepackage[utf8]{inputenc} % replace by the encoding you are using\n4: \\usepackage{url}\n5: \\usepackage[scale=0.8]{geometry}\n6: \\AtBeginDocument{\\recomputelengths} % required when changes are made to page layout lengths\n7: \n8: \\firstname{MyName}\n9: \\familyname{MyLastName}\n10: \n11: % SPLITBIB\n12: \\usepackage[export]{splitbib} % So I can display publications by categories.\n13: \\begin{category}{\\subsection{Press}}\n14: \\SBentries{press1}\n15: \\end{category}\n16: \\begin{category}{\\subsection{Presentations}}\n17: \\SBentries{pres1,pres2}\n18: \\end{category}\n19: \\begin{category}{\\subsection{Papers}}\n20: \\SBentries{paper1,paper2}\n21: \\end{category}\n22: \n23: % BEGIN DOC\n24: \\begin{document}\n25: \\maketitle\n26: \n27: \\section{Education}\n28: \\cventry{2005--2010}{Deg}{Some U}{Someplace}{Computer Science}{Some notes}\n29: \n30: \\subsection{Professional}\n31: \\cventry{2000--2005}{Technical Specialist}{Some company}{Some City}{}{Some description}\n32: \n33: \\renewcommand{\\listitemsymbol}{-} % change the symbol for lists\n34: \n35: \\nocite{*}\n36: \n37: %BIBLIOGRAPHY\n38: \\SBtitlestyle{simple}\n39: %\\SBsubtitlestyle{none}\n40: \\bibliographystyle{plain}\n41: \\bibliography{publications} % 'publications' is the name of a BibTeX file\n42: \n43: \\end{document}\n44: \n```\n\nCompile log (tail):\n```\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! You can't use `\\relax' after \\the.\n \\c@ \n \nl.23 \\bibitem{paper1}\n \nI'm forgetting what you said and using zero instead.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \nl.41 \\bibliography{publications}\n % 'publications' is the name of a BibTe...\nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 27235 strings out of 467099\n 532125 string characters out of 5408265\n 935974 words of memory out of 5000000\n 56122 multiletter control sequences out of 15000+600000\n 640732 words of font info for 87 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 137i,10n,136p,1001b,463s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "target": "\n<<<<<<< SEARCH\n\\renewcommand{\\listitemsymbol}{-} % change the symbol for lists\n\n\\nocite{*}\n\n%BIBLIOGRAPHY\n\\SBtitlestyle{simple}\n%\\SBsubtitlestyle{none}\n\\bibliographystyle{plain}\n\\bibliography{publications} % 'publications' is the name of a BibTeX file\n=======\n\\section{Publications}\n\\bibliographystylepress{plain}\n\\bibliographypress{publications}\n\\bibliographystylepresentations{plain}\n\\bibliographypresentations{publications}\n\\bibliographystylepapers{plain}\n\\bibliographypapers{publications}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\begin{document}\n\\maketitle\n=======\n\\begin{document}\n\\nocitepress{press1}\n\\nocitepresentations{pres1,pres2}\n\\nocitepapers{paper1,paper2}\n\\maketitle\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n% SPLITBIB\n\\usepackage[export]{splitbib} % So I can display publications by categories.\n\\begin{category}{\\subsection{Press}}\n\\SBentries{press1}\n\\end{category}\n\\begin{category}{\\subsection{Presentations}}\n \\SBentries{pres1,pres2}\n\\end{category}\n\\begin{category}{\\subsection{Papers}}\n \\SBentries{paper1,paper2}\n\\end{category}\n=======\n\\usepackage{multibib}\n\\newcites{press}{Press}\n\\newcites{presentations}{Presentations}\n\\newcites{papers}{Papers}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\AtBeginDocument{\\recomputelengths} % required when changes are made to page layout lengths\n=======\n\\AtBeginDocument{\\recomputelengths}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\moderncvtheme[blue]{classic} % optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 'roman' (for roman fonts, instead of sans serif fonts)\n\\usepackage[utf8]{inputenc} % replace by the encoding you are using\n=======\n\\moderncvtheme[blue]{classic}\n\\usepackage[utf8]{inputenc}\n>>>>>>> REPLACE\n", "id": "texse_multi_101397", "doc": "texse_multi/101397", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/101397", "fix_answer": "top", "answer_id": 101418, "answer_score": 5, "fix_source": "answer_doc", "companions": ["publications.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 101397, "accepted_answer_id": null, "title": "Lonely \\item - perhaps a missing list environment", "tags": ["bibtex", "subdividing", "moderncv", "splitbib"], "score": 6, "created": "2013-03-08", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 1: Undefined control sequence.\n- line 3: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 8: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 13: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 18: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 23: LaTeX Error: Lonely \\item--perhaps a missing list environment.\n- line 41: Incomplete \\ifx; all text was ignored after line 29.\n\nProject files:\n- main.tex\n- publications.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,a4paper]{moderncv}\n2: \\moderncvtheme[blue]{classic} % optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 'roman' (for roman fonts, instead of sans serif fonts)\n3: \\usepackage[utf8]{inputenc} % replace by the encoding you are using\n4: \\usepackage{url}\n5: \\usepackage[scale=0.8]{geometry}\n6: \\AtBeginDocument{\\recomputelengths} % required when changes are made to page layout lengths\n7: \n8: \\firstname{MyName}\n9: \\familyname{MyLastName}\n10: \n11: % SPLITBIB\n12: \\usepackage[export]{splitbib} % So I can display publications by categories.\n13: \\begin{category}{\\subsection{Press}}\n14: \\SBentries{press1}\n15: \\end{category}\n16: \\begin{category}{\\subsection{Presentations}}\n17: \\SBentries{pres1,pres2}\n18: \\end{category}\n19: \\begin{category}{\\subsection{Papers}}\n20: \\SBentries{paper1,paper2}\n21: \\end{category}\n22: \n23: % BEGIN DOC\n24: \\begin{document}\n25: \\maketitle\n26: \n27: \\section{Education}\n28: \\cventry{2005--2010}{Deg}{Some U}{Someplace}{Computer Science}{Some notes}\n29: \n30: \\subsection{Professional}\n31: \\cventry{2000--2005}{Technical Specialist}{Some company}{Some City}{}{Some description}\n32: \n33: \\renewcommand{\\listitemsymbol}{-} % change the symbol for lists\n34: \n35: \\nocite{*}\n36: \n37: %BIBLIOGRAPHY\n38: \\SBtitlestyle{simple}\n39: %\\SBsubtitlestyle{none}\n40: \\bibliographystyle{plain}\n41: \\bibliography{publications} % 'publications' is the name of a BibTeX file\n42: \n43: \\end{document}\n44: \n```\n\nCompile log (tail):\n```\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! You can't use `\\relax' after \\the.\n \\c@ \n \nl.23 \\bibitem{paper1}\n \nI'm forgetting what you said and using zero instead.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \nl.41 \\bibliography{publications}\n % 'publications' is the name of a BibTe...\nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n)\n! Incomplete \\ifx; all text was ignored after line 29.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 27235 strings out of 467099\n 532125 string characters out of 5408265\n 935974 words of memory out of 5000000\n 56122 multiletter control sequences out of 15000+600000\n 640732 words of font info for 87 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 137i,10n,136p,1001b,463s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "question_url": "https://tex.stackexchange.com/q/101397", "answer_url": "https://tex.stackexchange.com/a/101418", "question_author": {"user_id": 15196, "name": "fiacobelli", "url": "https://tex.stackexchange.com/users/15196"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 15925, "name": "Andrew Swann", "url": "https://tex.stackexchange.com/users/15925"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\makeatletter\n% correct the definition from apalike\n\\def\\thebibliography#1{\\chapter*{\\bibname}\\@mkboth\n {\\sl\\uppercase{\\bibname}}{\\sl\\uppercase{\\bibname}}\\list\n {\\relax}{\\setlength{\\labelsep}{0em}\n \\setlength{\\itemindent}{-\\bibhang}\n \\setlength{\\leftmargin}{\\bibhang}}\n \\def\\newblock{\\hskip .11em plus .33em minus .07em}\n \\sloppy\\clubpenalty4000\\widowpenalty4000\n \\sfcode`\\.=1000\\relax}\n\\makeatother\n%\\usepackage{tcolorbox}\n%\\tcbuselibrary{skins,xparse,breakable}", "replace": "\\usepackage{tcolorbox}\n\\tcbuselibrary{skins,xparse,breakable}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 1, "text": "Missing control sequence inserted.", "file": null, "fileLabel": "main.toc"}], "log_tail": "ics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\nContents\n(./main.toc\n! Missing control sequence inserted.\n \n \\inaccessible \nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nPlease don't say `\\def cs{...}', say `\\def\\cs{...}'.\nI've inserted an inaccessible control sequence so that your\ndefinition will be completed without mixing me up too badly.\nYou can recover graciously from this error, if you're\ncareful; see exercise 27.2 in The TeXbook.\n\n! TeX capacity exceeded, sorry [parameter stack size=20000].\n\\@xifempty #1#2@#3#4#5\\@nil ->\n \\ifx #3#4\\@xp \\@firstoftwo \\else \\@xp \\@second...\nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nIf you really absolutely need more capacity,\nyou can ask a wizard to enlarge me.\n\n \nHere is how much of TeX's memory you used:\n 17360 strings out of 467099\n 377201 string characters out of 5408265\n 951629 words of memory out of 5000000\n 46272 multiletter control sequences out of 15000+600000\n 630025 words of font info for 50 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 8002i,3n,20001p,459b,140s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.toc line 1: Missing control sequence inserted.\n\nProject files:\n- main.tex\n- references.bib\n\nOther project files (edit them with ):\n\n`references.bib` (full file, line-numbered):\n```\n1: @inproceedings{guide2001project,\n2: title={Project management body of knowledge (pmbok{\\textregistered} guide)},\n3: author={Guide, A},\n4: booktitle={Project Management Institute},\n5: volume={11},\n6: year={2001}\n7: }\n8: @inproceedings{project2000guide,\n9: title={A guide to the project management body of knowledge (PMBOK Guide).},\n10: author={Project Management Institute},\n11: year={2000},\n12: organization={Project Management Institute}\n13: }\n14: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,openany,12pt]{amsbook}\n2: \\usepackage{apalike}\n3: \\usepackage{tcolorbox}\n4: \\tcbuselibrary{skins,xparse,breakable}\n5: \\begin{document}\n6: \n7: \\tableofcontents\n8: \n9: \\cite{guide2001project,project2000guide}\n10: \n11: \\bibliographystyle{apalike}\n12: \\bibliography{references}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\nContents\n(./main.toc\n! Missing control sequence inserted.\n \n \\inaccessible \nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nPlease don't say `\\def cs{...}', say `\\def\\cs{...}'.\nI've inserted an inaccessible control sequence so that your\ndefinition will be completed without mixing me up too badly.\nYou can recover graciously from this error, if you're\ncareful; see exercise 27.2 in The TeXbook.\n\n! TeX capacity exceeded, sorry [parameter stack size=20000].\n\\@xifempty #1#2@#3#4#5\\@nil ->\n \\ifx #3#4\\@xp \\@firstoftwo \\else \\@xp \\@second...\nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nIf you really absolutely need more capacity,\nyou can ask a wizard to enlarge me.\n\n \nHere is how much of TeX's memory you used:\n 17360 strings out of 467099\n 377201 string characters out of 5408265\n 951629 words of memory out of 5000000\n 46272 multiletter control sequences out of 15000+600000\n 630025 words of font info for 50 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 8002i,3n,20001p,459b,140s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "target": "\n<<<<<<< SEARCH\n\\usepackage{tcolorbox}\n\\tcbuselibrary{skins,xparse,breakable}\n=======\n\\makeatletter\n% correct the definition from apalike\n\\def\\thebibliography#1{\\chapter*{\\bibname}\\@mkboth\n {\\sl\\uppercase{\\bibname}}{\\sl\\uppercase{\\bibname}}\\list\n {\\relax}{\\setlength{\\labelsep}{0em}\n \\setlength{\\itemindent}{-\\bibhang}\n \\setlength{\\leftmargin}{\\bibhang}}\n \\def\\newblock{\\hskip .11em plus .33em minus .07em}\n \\sloppy\\clubpenalty4000\\widowpenalty4000\n \\sfcode`\\.=1000\\relax}\n\\makeatother\n%\\usepackage{tcolorbox}\n%\\tcbuselibrary{skins,xparse,breakable}\n>>>>>>> REPLACE\n", "id": "texse_multi_718350", "doc": "texse_multi/718350", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/718350", "fix_answer": "accepted", "answer_id": 718496, "answer_score": 6, "fix_source": "answer_doc", "companions": ["references.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing control sequence inserted.", "changed_files": ["main.tex"], "question_id": 718350, "accepted_answer_id": 718496, "title": "Resolving conflict between apalike and amsbook", "tags": ["table-of-contents", "bibliographies", "apa-style", "bibliographystyle", "amsbook"], "score": 2, "created": "2024-05-20", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.toc line 1: Missing control sequence inserted.\n\nProject files:\n- main.tex\n- references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,openany,12pt]{amsbook}\n2: \\usepackage{apalike}\n3: \\usepackage{tcolorbox}\n4: \\tcbuselibrary{skins,xparse,breakable}\n5: \\begin{document}\n6: \n7: \\tableofcontents\n8: \n9: \\cite{guide2001project,project2000guide}\n10: \n11: \\bibliographystyle{apalike}\n12: \\bibliography{references}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\nContents\n(./main.toc\n! Missing control sequence inserted.\n \n \\inaccessible \nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nPlease don't say `\\def cs{...}', say `\\def\\cs{...}'.\nI've inserted an inaccessible control sequence so that your\ndefinition will be completed without mixing me up too badly.\nYou can recover graciously from this error, if you're\ncareful; see exercise 27.2 in The TeXbook.\n\n! TeX capacity exceeded, sorry [parameter stack size=20000].\n\\@xifempty #1#2@#3#4#5\\@nil ->\n \\ifx #3#4\\@xp \\@firstoftwo \\else \\@xp \\@second...\nl.1 ... {}{}{Contents}}{}\\mark {}\\endgroup }}{3}{}\n %\nIf you really absolutely need more capacity,\nyou can ask a wizard to enlarge me.\n\n \nHere is how much of TeX's memory you used:\n 17360 strings out of 467099\n 377201 string characters out of 5408265\n 951629 words of memory out of 5000000\n 46272 multiletter control sequences out of 15000+600000\n 630025 words of font info for 50 fonts, out of 8000000 for 9000\n 1302 hyphenation exceptions out of 8191\n 8002i,3n,20001p,459b,140s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "question_url": "https://tex.stackexchange.com/q/718350", "answer_url": "https://tex.stackexchange.com/a/718496", "question_author": {"user_id": 257435, "name": "Chau Long", "url": "https://tex.stackexchange.com/users/257435"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[utf8]{inputenc} % not needed\n\\usepackage[T1]{fontenc} % this IS needed\n\\usepackage{natbib}\n\\usepackage[spanish, es-noshorthands, shorthands=off]{babel}", "replace": "\\usepackage{natbib}\n\\usepackage[spanish]{babel}\n\\usepackage[utf8]{inputenc}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 6, "text": "Missing \\endcsname inserted.", "file": null, "fileLabel": "main.bbl"}, {"line": 6, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": "al/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\nLaTeX Info: Redefining \\. on input line 12.\nLaTeX Info: Redefining \\% on input line 12.\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2485 strings out of 467099\n 44812 string characters out of 5408265\n 462830 words of memory out of 5000000\n 31869 multiletter control sequences out of 15000+600000\n 629577 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,50p,184b,365s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 65534 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 6: Missing \\endcsname inserted.\n- line 6: Missing \\endcsname inserted.\n\nProject files:\n- biblio.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`biblio.bib` (full file, line-numbered):\n```\n1: @article{efron1979,\n2: author={Bradley Efron},\n3: title={Bootstrap Methods: Another Look at the Jackknife},\n4: journal={The Annals of Statistics},\n5: year=1979,\n6: number=1,\n7: pages={1-26},\n8: volume={7}\n9: }\n10: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt]{article}\n2: \\usepackage{natbib}\n3: \\usepackage[spanish]{babel}\n4: \\usepackage[utf8]{inputenc}\n5: \n6: \\title{min}\n7: \\author{none}\n8: \\date{today}\n9: \n10: \\begin{document}\n11: \n12: \\maketitle\n13: cite the citation \\citep{efron1979}\n14: \n15: \\bibliographystyle{chicago}\n16: \n17: \\bibliography{biblio.bib}\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\nal/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\nLaTeX Info: Redefining \\. on input line 12.\nLaTeX Info: Redefining \\% on input line 12.\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2485 strings out of 467099\n 44812 string characters out of 5408265\n 462830 words of memory out of 5000000\n 31869 multiletter control sequences out of 15000+600000\n 629577 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,50p,184b,365s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 65534 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\usepackage{natbib}\n\\usepackage[spanish]{babel}\n\\usepackage[utf8]{inputenc}\n=======\n\\usepackage[utf8]{inputenc} % not needed\n\\usepackage[T1]{fontenc} % this IS needed\n\\usepackage{natbib}\n\\usepackage[spanish, es-noshorthands, shorthands=off]{babel}\n>>>>>>> REPLACE\n", "id": "texse_multi_630685", "doc": "texse_multi/630685", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/630685", "fix_answer": "accepted", "answer_id": 630706, "answer_score": 2, "fix_source": "answer_doc", "companions": ["biblio.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing \\CS inserted.", "changed_files": ["main.tex"], "question_id": 630685, "accepted_answer_id": 630706, "title": "Babel(spanish)/chicago bibliography style conflicting", "tags": ["bibtex", "natbib", "babel", "spanish"], "score": 2, "created": "2022-01-19", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 6: Missing \\endcsname inserted.\n- line 6: Missing \\endcsname inserted.\n\nProject files:\n- biblio.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt]{article}\n2: \\usepackage{natbib}\n3: \\usepackage[spanish]{babel}\n4: \\usepackage[utf8]{inputenc}\n5: \n6: \\title{min}\n7: \\author{none}\n8: \\date{today}\n9: \n10: \\begin{document}\n11: \n12: \\maketitle\n13: cite the citation \\citep{efron1979}\n14: \n15: \\bibliographystyle{chicago}\n16: \n17: \\bibliography{biblio.bib}\n18: \n19: \\end{document}\n20: \n```\n\nCompile log (tail):\n```\nal/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\nLaTeX Info: Redefining \\. on input line 12.\nLaTeX Info: Redefining \\% on input line 12.\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2485 strings out of 467099\n 44812 string characters out of 5408265\n 462830 words of memory out of 5000000\n 31869 multiletter control sequences out of 15000+600000\n 629577 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,50p,184b,365s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 65534 bytes).\nPDF statistics:\n 38 PDF objects out of 1000 (max. 8388607)\n 22 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/630685", "answer_url": "https://tex.stackexchange.com/a/630706", "question_author": {"user_id": 261796, "name": "Alejandro Calle", "url": "https://tex.stackexchange.com/users/261796"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 38080, "name": "Rmano", "url": "https://tex.stackexchange.com/users/38080"}} {"bib": true, "lane": "project", "file_edits": [{"file": "FGF23BIB.bib", "search": "Abstract = {We isolated mouse cDNA encoding a novel FGF (251 amino acids). As this is the 23rd documented FGF, we termed it FGF-23. FGF-23 has a hydrophobic amino terminus ( approximately 24 amino acids), which is a typical signal sequence. As expected, recombinant mouse FGF-23 was efficiently secreted by High Five insect cell-infected recombinant baculovirus containing the cDNA, indicating that FGF-23 is a secreted protein. We also isolated human cDNA encoding FGF-23 (251 amino acids), which is highly identical ( approximately 72\\% amino acid identity) to mouse FGF-23. Of human FGF family members, FGF-23 is most similar to FGF-21 and FGF-19 ( approximately 24\\% and approximately 22\\% amino acid identities, respectively). Human FGF-23 gene was localized on the chromosome 12p13 and found to be tandem linked (within 5.5 kb) to human FGF-6 gene. The expression of FGF-23 mRNA in mouse adult tissues was examined by real-time quantitative polymerase chain reaction. FGF-23 mRNA was mainly expressed in the brain and thymus at low levels. The localization of FGF-23 mRNA in the brain was examined by in situ hybridization. FGF-23 mRNA in the brain was found to be preferentially expressed in the ventrolateral thalamic nucleus. Therefore, FGF-23 is expected a unique FGF that plays roles in the function of the ventrolateral thalamic nucleus.},", "replace": "Abstract = {We isolated mouse cDNA encoding a novel FGF (251 amino acids). As this is the 23rd documented FGF, we termed it FGF-23. FGF-23 has a hydrophobic amino terminus ( approximately 24 amino acids), which is a typical signal sequence. As expected, recombinant mouse FGF-23 was efficiently secreted by High Five insect cell-infected recombinant baculovirus containing the cDNA, indicating that FGF-23 is a secreted protein. We also isolated human cDNA encoding FGF-23 (251 amino acids), which is highly identical ( approximately 72% amino acid identity) to mouse FGF-23. Of human FGF family members, FGF-23 is most similar to FGF-21 and FGF-19 ( approximately 24% and approximately 22% amino acid identities, respectively). Human FGF-23 gene was localized on the chromosome 12p13 and found to be tandem linked (within 5.5 kb) to human FGF-6 gene. The expression of FGF-23 mRNA in mouse adult tissues was examined by real-time quantitative polymerase chain reaction. FGF-23 mRNA was mainly expressed in the brain and thymus at low levels. The localization of FGF-23 mRNA in the brain was examined by in situ hybridization. FGF-23 mRNA in the brain was found to be preferentially expressed in the ventrolateral thalamic nucleus. Therefore, FGF-23 is expected a unique FGF that plays roles in the function of the ventrolateral thalamic nucleus.},", "type": "real"}, {"file": "FGF23BIB.bib", "search": "Bdsk-File-1 = {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}}\n}", "replace": "Bdsk-File-1 = {YnBsaXN0MDDUAQIDBAUGJCVYJHZlcnNpb25YJG9iamVjdHNZJGFyY2hpdmVyVCR0b3ASAAGGoKgHCBMUFRYaIVUkbnVsbNMJCgsMDRBWJGNsYXNzV05TLmtleXNaTlMub2JqZWN0c4AHog4PgAKAA6IREoAEgAVccmVsYXRpdmVQYXRoWWFsaWFzRGF0YV8QXC4uL0RvY3VtZW50cy9QYXBlcnMvQmlvY2hlbWljYWwgYW5kIEJpb3BoeXNpY2FsIFJlc2VhcmNoIENvbW11bmljYXRpb25zIDIwMDAgWWFtYXNoaXRhLTEucGRm0gkXGBlXTlMuZGF0YYAGTxECSAAAAAACSAACAAAMTWFjaW50b3NoIEhEAAAAAAAAAAAAAAAAAAAAzOE78EgrAAAAbHijH0Jpb2NoZW1pY2FsIGFuZCBCaW9wIzZBMEVBNi5wZGYAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABqDqbQN5T8AAAAAAAAAAAAAQADAAAJIAAAAAAAAAAAAAAAAAAAAAZQYXBlcnMAEAAIAADM4S3gAAAAEQAIAADQN3jcAAAAAQAQAGx4owAFM2YABTNlAADACwACAExNYWNpbnRvc2ggSEQ6VXNlcnM6AERvbWk6AERvY3VtZW50czoAUGFwZXJzOgBCaW9jaGVtaWNhbCBhbmQgQmlvcCM2QTBFQTYucGRmAA4AkgBIAEIAaQBvAGMAaABlAG0AaQBjAGEAbAAgAGEAbgBkACAAQgBpAG8AcABoAHkAcwBpAGMAYQBsACAAUgBlAHMAZQBhAHIAYwBoACAAQwBvAG0AbQB1AG4AaQBjAGEAdABpAG8AbgBzACAAMgAwADAAMAAgAFkAYQBtAGEAcwBoAGkAdABhAC0AMQAuAHAAZABmAA8AGgAMAE0AYQBjAGkAbgB0AG8AcwBoACAASABEABIAZFVzZXJzL0RvbWkvRG9jdW1lbnRzL1BhcGVycy9CaW9jaGVtaWNhbCBhbmQgQmlvcGh5c2ljYWwgUmVzZWFyY2ggQ29tbXVuaWNhdGlvbnMgMjAwMCBZYW1hc2hpdGEtMS5wZGYAEwABLwAAFQACAAv//wAA0hscHR5aJGNsYXNzbmFtZVgkY2xhc3Nlc11OU011dGFibGVEYXRhox0fIFZOU0RhdGFYTlNPYmplY3TSGxwiI1xOU0RpY3Rpb25hcnmiIiBfEA9OU0tleWVkQXJjaGl2ZXLRJidUcm9vdIABAAgAEQAaACMALQAyADcAQABGAE0AVABcAGcAaQBsAG4AcABzAHUAdwCEAI4A7QDyAPoA/ANIA00DWANhA28DcwN6A4MDiAOVA5gDqgOtA7IAAAAAAAACAQAAAAAAAAAoAAAAAAAAAAAAAAAAAAADtA==}}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["FGF23BIB.bib"], "single_shot_visible": true, "error_lines": [{"line": 13, "text": "File ended while scanning use of \\field.", "file": "main.tex", "fileLabel": null}], "log_tail": " `main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 13 (\\begingroup)\n### semi simple group (level 1) entered at line 13 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14260 strings out of 467099\n 295758 string characters out of 5408265\n 1279026 words of memory out of 5000000\n 43507 multiletter control sequences out of 15000+600000\n 637745 words of font info for 59 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 108i,7n,107p,11207b,2427s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 102195 bytes).\nPDF statistics:\n 44 PDF objects out of 1000 (max. 8388607)\n 26 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: File ended while scanning use of \\field.\n\nProject files:\n- FGF23BIB.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`FGF23BIB.bib` (full file, line-numbered):\n```\n1: @article{Yamashita:2000aa,\n2: Abstract = {We isolated mouse cDNA encoding a novel FGF (251 amino acids). As this is the 23rd documented FGF, we termed it FGF-23. FGF-23 has a hydrophobic amino terminus ( approximately 24 amino acids), which is a typical signal sequence. As expected, recombinant mouse FGF-23 was efficiently secreted by High Five insect cell-infected recombinant baculovirus containing the cDNA, indicating that FGF-23 is a secreted protein. We also isolated human cDNA encoding FGF-23 (251 amino acids), which is highly identical ( approximately 72\\% amino acid identity) to mouse FGF-23. Of human FGF family members, FGF-23 is most similar to FGF-21 and FGF-19 ( approximately 24\\% and approximately 22\\% amino acid identities, respectively). Human FGF-23 gene was localized on the chromosome 12p13 and found to be tandem linked (within 5.5 kb) to human FGF-6 gene. The expression of FGF-23 mRNA in mouse adult tissues was examined by real-time quantitative polymerase chain reaction. FGF-23 mRNA was mainly expressed in the brain and thymus at low levels. The localization of FGF-23 mRNA in the brain was examined by in situ hybridization. FGF-23 mRNA in the brain was found to be preferentially expressed in the ventrolateral thalamic nucleus. Therefore, FGF-23 is expected a unique FGF that plays roles in the function of the ventrolateral thalamic nucleus.},\n3: Author = {Yamashita, T and Yoshioka, M and Itoh, N},\n4: Date-Added = {2014-09-17 10:13:53 +0000},\n5: Date-Modified = {2014-09-17 10:13:53 +0000},\n6: Doi = {10.1006/bbrc.2000.3696},\n7: Journal = {Biochem Biophys Res Commun},\n8: Journal-Full = {Biochemical and biophysical research communications},\n9: Mesh = {Amino Acid Sequence; Animals; Baculoviridae; Blotting, Western; Brain; Cell Line; Chromosome Mapping; Chromosomes, Human, Pair 12; DNA, Complementary; Electrophoresis, Polyacrylamide Gel; Fibroblast Growth Factors; Humans; In Situ Hybridization; Mice; Molecular Sequence Data; Phylogeny; RNA, Complementary; RNA, Messenger; Recombinant Proteins; Sequence Homology, Amino Acid; Tissue Distribution; Ventral Thalamic Nuclei},\n10: Month = {Oct},\n11: Number = {2},\n12: Pages = {494-8},\n13: Pmid = {11032749},\n14: Pst = {ppublish},\n15: Title = {Identification of a novel fibroblast growth factor, FGF-23, preferentially expressed in the ventrolateral thalamic nucleus of the brain},\n16: Volume = {277},\n17: Year = {2000},\n18: Bdsk-Url-1 = {http://dx.doi.org/10.1006/bbrc.2000.3696},\n19: Bdsk-File-1 = {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}}\n20: }\n21: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{scrartcl}\n2: \n3: \\usepackage[T1]{fontenc}\n4: %\\usepackage[utf8]{inputenc}\n5: \\usepackage[ngerman]{babel}\n6: \\usepackage[babel,german=guillemets]{csquotes}\n7: \\usepackage[style=numeric,sorting=none]{biblatex}\n8: \n9: \\bibliography{FGF23BIB}\n10: \n11: \\renewcommand{\\contentsname}{Inhaltsverzeichnis}\n12: \n13: \\begin{document}\n14: \n15: \\author{XYZ}\n16: \\title{XYZ}\n17: \n18: \\maketitle\n19: \\tableofcontents\n20: \n21: \\section{Text}\n22: \\subsection{Text}\n23: Text \\autocite{Stubbs:2007aa}\n24: Text 2 \\autocite{Yamashita:2000aa}\n25: \n26: \\printbibliography\n27: \\end{document}\n28: \n```\n\nCompile log (tail):\n```\n`main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 13 (\\begingroup)\n### semi simple group (level 1) entered at line 13 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14260 strings out of 467099\n 295758 string characters out of 5408265\n 1279026 words of memory out of 5000000\n 43507 multiletter control sequences out of 15000+600000\n 637745 words of font info for 59 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 108i,7n,107p,11207b,2427s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 102195 bytes).\nPDF statistics:\n 44 PDF objects out of 1000 (max. 8388607)\n 26 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\nBdsk-File-1 = {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}}\n=======\nBdsk-File-1 = {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}}\n}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\nAbstract = {We isolated mouse cDNA encoding a novel FGF (251 amino acids). As this is the 23rd documented FGF, we termed it FGF-23. FGF-23 has a hydrophobic amino terminus ( approximately 24 amino acids), which is a typical signal sequence. As expected, recombinant mouse FGF-23 was efficiently secreted by High Five insect cell-infected recombinant baculovirus containing the cDNA, indicating that FGF-23 is a secreted protein. We also isolated human cDNA encoding FGF-23 (251 amino acids), which is highly identical ( approximately 72% amino acid identity) to mouse FGF-23. Of human FGF family members, FGF-23 is most similar to FGF-21 and FGF-19 ( approximately 24% and approximately 22% amino acid identities, respectively). Human FGF-23 gene was localized on the chromosome 12p13 and found to be tandem linked (within 5.5 kb) to human FGF-6 gene. The expression of FGF-23 mRNA in mouse adult tissues was examined by real-time quantitative polymerase chain reaction. FGF-23 mRNA was mainly expressed in the brain and thymus at low levels. The localization of FGF-23 mRNA in the brain was examined by in situ hybridization. FGF-23 mRNA in the brain was found to be preferentially expressed in the ventrolateral thalamic nucleus. Therefore, FGF-23 is expected a unique FGF that plays roles in the function of the ventrolateral thalamic nucleus.},\n=======\nAbstract = {We isolated mouse cDNA encoding a novel FGF (251 amino acids). As this is the 23rd documented FGF, we termed it FGF-23. FGF-23 has a hydrophobic amino terminus ( approximately 24 amino acids), which is a typical signal sequence. As expected, recombinant mouse FGF-23 was efficiently secreted by High Five insect cell-infected recombinant baculovirus containing the cDNA, indicating that FGF-23 is a secreted protein. We also isolated human cDNA encoding FGF-23 (251 amino acids), which is highly identical ( approximately 72\\% amino acid identity) to mouse FGF-23. Of human FGF family members, FGF-23 is most similar to FGF-21 and FGF-19 ( approximately 24\\% and approximately 22\\% amino acid identities, respectively). Human FGF-23 gene was localized on the chromosome 12p13 and found to be tandem linked (within 5.5 kb) to human FGF-6 gene. The expression of FGF-23 mRNA in mouse adult tissues was examined by real-time quantitative polymerase chain reaction. FGF-23 mRNA was mainly expressed in the brain and thymus at low levels. The localization of FGF-23 mRNA in the brain was examined by in situ hybridization. FGF-23 mRNA in the brain was found to be preferentially expressed in the ventrolateral thalamic nucleus. Therefore, FGF-23 is expected a unique FGF that plays roles in the function of the ventrolateral thalamic nucleus.},\n>>>>>>> REPLACE\n", "id": "texse_multi_202402", "doc": "texse_multi/202402", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/202402", "fix_answer": "top", "answer_id": 202409, "answer_score": 3, "fix_source": "snippet", "companions": ["FGF23BIB.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["FGF23BIB.bib"], "question_id": 202402, "accepted_answer_id": null, "title": "Adding specific citation creates error message", "tags": ["bibtex", "bibliographies"], "score": 1, "created": "2014-09-21", "error_message": "File ended while scanning use", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: File ended while scanning use of \\field.\n\nProject files:\n- FGF23BIB.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{scrartcl}\n2: \n3: \\usepackage[T1]{fontenc}\n4: %\\usepackage[utf8]{inputenc}\n5: \\usepackage[ngerman]{babel}\n6: \\usepackage[babel,german=guillemets]{csquotes}\n7: \\usepackage[style=numeric,sorting=none]{biblatex}\n8: \n9: \\bibliography{FGF23BIB}\n10: \n11: \\renewcommand{\\contentsname}{Inhaltsverzeichnis}\n12: \n13: \\begin{document}\n14: \n15: \\author{XYZ}\n16: \\title{XYZ}\n17: \n18: \\maketitle\n19: \\tableofcontents\n20: \n21: \\section{Text}\n22: \\subsection{Text}\n23: Text \\autocite{Stubbs:2007aa}\n24: Text 2 \\autocite{Yamashita:2000aa}\n25: \n26: \\printbibliography\n27: \\end{document}\n28: \n```\n\nCompile log (tail):\n```\n`main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 13 (\\begingroup)\n### semi simple group (level 1) entered at line 13 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14260 strings out of 467099\n 295758 string characters out of 5408265\n 1279026 words of memory out of 5000000\n 43507 multiletter control sequences out of 15000+600000\n 637745 words of font info for 59 fonts, out of 8000000 for 9000\n 1143 hyphenation exceptions out of 8191\n 108i,7n,107p,11207b,2427s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 102195 bytes).\nPDF statistics:\n 44 PDF objects out of 1000 (max. 8388607)\n 26 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/202402", "answer_url": "https://tex.stackexchange.com/a/202409", "question_author": {"user_id": 62909, "name": "user62909", "url": "https://tex.stackexchange.com/users/62909"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 62612, "name": "umarcor", "url": "https://tex.stackexchange.com/users/62612"}} {"bib": true, "lane": "project", "file_edits": [{"file": "Bronvermelding.bib", "search": "\n}\n@article{theory1,", "replace": "\n@article{theory1,", "type": "real"}, {"file": "main.tex", "search": "\\usepackage[backend=bibtex,style=numeric]{biblatex} %backend=biber is 'better'", "replace": "\\usepackage[backend=bibtex]{biblatex}", "type": "real"}, {"file": "main.tex", "search": "%\\bibliography{Bronvermelding}\n\\addbibresource{Bronvermelding.bib}", "replace": "\\bibliography{Bronvermelding}", "type": "real"}, {"file": "main.tex", "search": "\\cite{radioactivedecay2}\n\\cite{DLS1}\n\\printbibliography", "replace": "\\bibliographystyle{unsrt}\n\\addbibresource{Bronvermelding.bib}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["Bronvermelding.bib", "main.tex"], "single_shot_visible": false, "error_lines": [{"line": 60, "text": "Package biblatex Error: '\\bibliographystyle' invalid for 'biblatex'.", "file": "main.tex", "fileLabel": null}, {"line": 61, "text": "LaTeX Error: Can be used only in preamble.", "file": "main.tex", "fileLabel": null}], "log_tail": "se/8r.enc}] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run BibTeX on the file(s):\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 30703 strings out of 467099\n 600297 string characters out of 5408265\n 1245062 words of memory out of 5000000\n 59748 multiletter control sequences out of 15000+600000\n 629844 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1871b,1763s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12226 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 4097 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 60: Package biblatex Error: '\\bibliographystyle' invalid for 'biblatex'.\n- line 61: LaTeX Error: Can be used only in preamble.\n\nProject files:\n- Bronvermelding.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`Bronvermelding.bib` (full file, line-numbered):\n```\n1: @online{introduction1,\n2: author = {IARC Globocan 2012},\n3: title = {Section of Cancer Surveillance},\n4: year = {2012},\n5: url = {http://globocan.iarc.fr/Pages/fact_sheets_cancer.aspx},\n6: }\n7: \n8: @article{introduction2,\n9: title={Global burden of cancers attributable to infections in 2008: a review and synthetic analysis},\n10: author={De Martel, Catherine and Ferlay, Jacques and Franceschi, Silvia and Vignat, J{\\'e}r{\\^o}me and Bray, Freddie and Forman, David and Plummer, Martyn},\n11: journal={The lancet oncology},\n12: volume={13},\n13: number={6},\n14: pages={607--615},\n15: year={2012},\n16: publisher={Elsevier}\n17: }\n18: \n19: @article{introduction3,\n20: title={On the receiving end—patient perception of the side-effects of cancer chemotherapy},\n21: author={Coates, Alan and Abraham, Suzanne and Kaye, S Betai and Sowerbutts, Timothy and Frewin, Cheryl and Fox, RM and Tattersall, MHN},\n22: journal={European Journal of Cancer and Clinical Oncology},\n23: volume={19},\n24: number={2},\n25: pages={203--208},\n26: year={1983},\n27: publisher={Elsevier}\n28: }\n29: \n30: @article{introduction4,\n31: author = {Discher, Dennis E. and Ahmed, Fariyal},\n32: title = {POLYMERSOMES},\n33: journal = {Annual Review of Biomedical Engineering},\n34: volume = {8},\n35: number = {1},\n36: pages = {323-341},\n37: year = {2006},\n38: doi = {10.1146/annurev.bioeng.8.061505.095838},\n39: note ={PMID: 16834559},\n40: \n41: \n42: \n43: }\n44: @article{theory1,\n45: author = {Discher, Dennis E. and Ahmed, Fariyal},\n46: title = {POLYMERSOMES},\n47: journal = {Annual Review of Biomedical Engineering},\n48: volume = {8},\n49: number = {1},\n50: pages = {323-341},\n51: year = {2006},\n52: doi = {10.1146/annurev.bioeng.8.061505.095838},\n53: note ={PMID: 16834559},\n54: }\n55: \n56: \n57: @article{theory2,\n58: title={Cross-linked polymersome membranes: vesicles with broadly adjustable properties},\n59: author={Discher, Bohdana M and Bermudez, Harry and Hammer, Daniel A and Discher, Dennis E and Won, You-Yeon and Bates, Frank S},\n60: journal={The Journal of Physical Chemistry B},\n61: volume={106},\n62: number={11},\n63: pages={2848--2854},\n64: year={2002},\n65: publisher={ACS Publications}\n66: }\n67: \n68: @article{theory3,\n69: title={Biocompatible and biodegradable polymersomes as delivery vehicles in biomedical applications},\n70: author={Liu, Gong-Yan and Chen, Chao-Jian and Ji, Jian},\n71: journal={Soft Matter},\n72: volume={8},\n73: number={34},\n74: pages={8811--8821},\n75: year={2012},\n76: publisher={Royal Society of Chemistry}\n77: }\n78: \n79: @article{theory4,\n80: title={Polymersomes as radionuclide carriers loaded via active ion transport through the hydrophobic bilayer},\n81: author={Wang, G and De Kruijff, R and Stuart, MCA and Mendes, E and Wolterbeek, HT and Denkova, AG},\n82: journal={Soft Matter},\n83: volume={9},\n84: number={3},\n85: pages={727--734},\n86: year={2013},\n87: publisher={Royal Society of Chemistry}\n88: }\n89: \n90: @article{theory5,\n91: title={Emerging applications of polymersomes in delivery: from molecular dynamics to shrinkage of tumors},\n92: author={Discher, Dennis E and Ortiz, Vanessa and Srinivas, Goundla and Klein, Michael L and Kim, Younghoon and Christian, David and Cai, Shenshen and Photos, Peter and Ahmed, Fariyal},\n93: journal={Progress in polymer science},\n94: volume={32},\n95: number={8},\n96: pages={838--857},\n97: year={2007},\n98: publisher={Elsevier}\n99: }\n100: \n101: @article{theory6,\n102: title={Self assembling polymers as polymersomes for drug delivery},\n103: author={Prakash Jain, Jay and Yenet Ayen, Wubeante and Kumar, Neeraj},\n104: journal={Current pharmaceutical design},\n105: volume={17},\n106: number={1},\n107: pages={65--79},\n108: year={2011},\n109: publisher={Bentham Science Publishers}\n110: }\n111: \n112: @article{theorybiodegradability1,\n113: title={Suitability of Biodegradable Polymersomes as Radionuclide Carriers},\n114: author={Sanders, T.J.},\n115: year={2014},\n116: publisher={et. al.}\n117: }\n118: \n119: @article{Decayscheme1,\n120: title={Table of Radionuclides (Comments on evaluation)},\n121: author={Be, MM and Chist{\\'e}, V and Dulieu, C and Browne, E and Baglin, C and Chechev, V and Kuzmenco, N and Helmer, R and MACMAHON, D and LEE, KB},\n122: journal={CEA, France},\n123: year={1999}\n124: }\n125: \n126: @article{introduction5,\n127: title={Role of Block Copolymer Nanoconstructs in Cancer Therapy},\n128: author={K. K. Upadhyay and H. G. Agrawal and C. Upadhyay and C. Schatz and J. F. Le Meins and Ambikanandan Misra and Sebastian Lecommandoux},\n129: journal= {Critical Reviews™ in Therapeutic Drug Carrier Systems},\n130: volume={26},\n131: issn={0743-4863},\n132: year={2009},\n133: number={2},\n134: pages={157--205}\n135: }\n136: \n137: @article{DLS1,\n138: title = \"Emerging applications of polymersomes in delivery: From molecular dynamics to shrinkage of tumors \",\n139: journal = \"Progress in Polymer Science \",\n140: volume = \"32\",\n141: number = \"8–9\",\n142: pages = \"838 - 857\",\n143: year = \"2007\",\n144: note = \"Polymers in Biomedical Applications \",\n145: issn = \"0079-6700\",\n146: author = \"Dennis E. Discher and Vanessa Ortiz and Goundla Srinivas and Michael L. Klein and Younghoon Kim and David Christian and Shenshen Cai and Peter Photos and Fariyal Ahmed\",\n147: keywords = \"Liposomes\",\n148: keywords = \"Amphiphile\",\n149: keywords = \"Block copolymers\",\n150: keywords = \"Nano-particles\",\n151: keywords = \"Controlled release \"\n152: }\n153: \n154: @book{radioactivedecay1,\n155: title={Radioactivity And Radioactive Decay},\n156: author={Jha, D.K.},\n157: isbn={9788171418701},\n158: publisher={Discovery Publishing House Pvt. Limited}\n159: }\n160: \n161: @book{radioactivedecay2,\n162: title={Radioactivity: Introduction and History: Introduction and History},\n163: author={L'Annunziata, Michael F},\n164: year={2007},\n165: publisher={Elsevier}\n166: }\n167: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt]{report}\n2: \\usepackage{geometry}\n3: \\usepackage{amsmath}\n4: \\usepackage{acronym}\n5: \\usepackage{times}\n6: \\usepackage{epstopdf}\n7: \\usepackage{amssymb}\n8: \\usepackage{mathrsfs}\n9: \\usepackage{latexsym}\n10: \\usepackage{wrapfig}\n11: \\usepackage[font={footnotesize,it}]{caption}\n12: \\usepackage{url}\n13: \\usepackage{float}\n14: \\usepackage{titling}\n15: \\renewcommand{\\thechapter}{\\Roman{chapter}}\n16: \\renewcommand{\\thesection}{\\arabic{chapter}.\\arabic{section}}\n17: \\renewcommand{\\thetable}{\\arabic{chapter}.\\arabic{table}}\n18: \\renewcommand{\\thefigure}{\\arabic{chapter}.\\arabic{figure}}\n19: \\usepackage{hyperref}\n20: \\usepackage{cleveref}\n21: \\usepackage{graphics}\n22: \\usepackage[pdftex]{graphicx}\n23: \\usepackage{siunitx}\n24: \\usepackage{booktabs}\n25: \\usepackage{microtype}\n26: \\usepackage{subfigure}\n27: \\usepackage[english]{babel}\\addto\\captionsenglish\n28: {\\renewcommand{\\bibname}{References}}\n29: \\usepackage[backend=bibtex]{biblatex}\n30: \\usepackage{multirow}\n31: \\usepackage{textcomp}\n32: \\usepackage{csquotes} %Package biblatex Warning: 'babel/polyglossia' detected but 'csquotes' missing.\n33: \\usepackage{listings}\n34: \\usepackage{babel,blindtext}\n35: %\\usepackage[T1]{fontenc}\n36: \\geometry{a4paper} % ... or letter or a4paper or a5paper or ... %\\usepackage[parfill]{parskip} % Activate to begin paragraphs with an empty line rather than an indent\n37: \\DeclareGraphicsRule{.tif}{png}{.png}{`convert #1 `dirname #1`/`basename #1 .tif`.png}\n38: \\hypersetup{colorlinks,\n39: citecolor=black,\n40: filecolor=black,\n41: linkcolor=black,\n42: urlcolor=blue }\n43: \\setlength{\\textwidth}{420pt}\n44: \\oddsidemargin = 0.5cm\n45: \\def \\m{$\\mu$}\n46: \\def \\g{$\\gamma$}\n47: \\def \\b{$\\beta^-$}\n48: \\def \\a{$\\alpha$}\n49: \\newcommand{\\unicode}[1]{{}}\n50: \n51: \\bibliography{Bronvermelding}\n52: \n53: \n54: \\begin{document}\n55: \n56: \n57: Textfile bla bla bla\n58: \n59: \n60: \\bibliographystyle{unsrt}\n61: \\addbibresource{Bronvermelding.bib}\n62: \n63: \n64: \\end{document}\n65: \n```\n\nCompile log (tail):\n```\nse/8r.enc}] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run BibTeX on the file(s):\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 30703 strings out of 467099\n 600297 string characters out of 5408265\n 1245062 words of memory out of 5000000\n 59748 multiletter control sequences out of 15000+600000\n 629844 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1871b,1763s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12226 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 4097 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\bibliographystyle{unsrt}\n\\addbibresource{Bronvermelding.bib}\n=======\n\\cite{radioactivedecay2}\n\\cite{DLS1}\n\\printbibliography\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\bibliography{Bronvermelding}\n=======\n%\\bibliography{Bronvermelding}\n\\addbibresource{Bronvermelding.bib}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[backend=bibtex]{biblatex}\n=======\n\\usepackage[backend=bibtex,style=numeric]{biblatex} %backend=biber is 'better'\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n@article{theory1,\n=======\n\n}\n@article{theory1,\n>>>>>>> REPLACE\n", "id": "texse_multi_226137", "doc": "texse_multi/226137", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/226137", "fix_answer": "accepted", "answer_id": 226138, "answer_score": 38, "fix_source": "multi", "companions": ["Bronvermelding.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package biblatex Error: 'X' invalid for 'X'.", "changed_files": ["Bronvermelding.bib", "main.tex"], "question_id": 226137, "accepted_answer_id": 226138, "title": "Bibliographystyle invalid, what am I doing wrong in my latex file or bibtex file?", "tags": ["biblatex", "bibtex", "bibliographies"], "score": 35, "created": "2015-02-02", "error_message": "Package biblatex Error: '\\bibliographystyle' invalid.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 60: Package biblatex Error: '\\bibliographystyle' invalid for 'biblatex'.\n- line 61: LaTeX Error: Can be used only in preamble.\n\nProject files:\n- Bronvermelding.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt]{report}\n2: \\usepackage{geometry}\n3: \\usepackage{amsmath}\n4: \\usepackage{acronym}\n5: \\usepackage{times}\n6: \\usepackage{epstopdf}\n7: \\usepackage{amssymb}\n8: \\usepackage{mathrsfs}\n9: \\usepackage{latexsym}\n10: \\usepackage{wrapfig}\n11: \\usepackage[font={footnotesize,it}]{caption}\n12: \\usepackage{url}\n13: \\usepackage{float}\n14: \\usepackage{titling}\n15: \\renewcommand{\\thechapter}{\\Roman{chapter}}\n16: \\renewcommand{\\thesection}{\\arabic{chapter}.\\arabic{section}}\n17: \\renewcommand{\\thetable}{\\arabic{chapter}.\\arabic{table}}\n18: \\renewcommand{\\thefigure}{\\arabic{chapter}.\\arabic{figure}}\n19: \\usepackage{hyperref}\n20: \\usepackage{cleveref}\n21: \\usepackage{graphics}\n22: \\usepackage[pdftex]{graphicx}\n23: \\usepackage{siunitx}\n24: \\usepackage{booktabs}\n25: \\usepackage{microtype}\n26: \\usepackage{subfigure}\n27: \\usepackage[english]{babel}\\addto\\captionsenglish\n28: {\\renewcommand{\\bibname}{References}}\n29: \\usepackage[backend=bibtex]{biblatex}\n30: \\usepackage{multirow}\n31: \\usepackage{textcomp}\n32: \\usepackage{csquotes} %Package biblatex Warning: 'babel/polyglossia' detected but 'csquotes' missing.\n33: \\usepackage{listings}\n34: \\usepackage{babel,blindtext}\n35: %\\usepackage[T1]{fontenc}\n36: \\geometry{a4paper} % ... or letter or a4paper or a5paper or ... %\\usepackage[parfill]{parskip} % Activate to begin paragraphs with an empty line rather than an indent\n37: \\DeclareGraphicsRule{.tif}{png}{.png}{`convert #1 `dirname #1`/`basename #1 .tif`.png}\n38: \\hypersetup{colorlinks,\n39: citecolor=black,\n40: filecolor=black,\n41: linkcolor=black,\n42: urlcolor=blue }\n43: \\setlength{\\textwidth}{420pt}\n44: \\oddsidemargin = 0.5cm\n45: \\def \\m{$\\mu$}\n46: \\def \\g{$\\gamma$}\n47: \\def \\b{$\\beta^-$}\n48: \\def \\a{$\\alpha$}\n49: \\newcommand{\\unicode}[1]{{}}\n50: \n51: \\bibliography{Bronvermelding}\n52: \n53: \n54: \\begin{document}\n55: \n56: \n57: Textfile bla bla bla\n58: \n59: \n60: \\bibliographystyle{unsrt}\n61: \\addbibresource{Bronvermelding.bib}\n62: \n63: \n64: \\end{document}\n65: \n```\n\nCompile log (tail):\n```\nse/8r.enc}] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run BibTeX on the file(s):\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 30703 strings out of 467099\n 600297 string characters out of 5408265\n 1245062 words of memory out of 5000000\n 59748 multiletter control sequences out of 15000+600000\n 629844 words of font info for 47 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1871b,1763s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12226 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 4097 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/226137", "answer_url": "https://tex.stackexchange.com/a/226138", "question_author": {"user_id": 71629, "name": "W. v. Ekeren", "url": "https://tex.stackexchange.com/users/71629"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": null, "name": "user31729", "url": null}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": " keyword=test", "replace": " keyword = test", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 14, "text": "Argument of \\ifblank has an extra }.", "file": "main.tex", "fileLabel": null}, {"line": 15, "text": "Package biblatex Error: Filter 'fil1' not found.", "file": "main.tex", "fileLabel": null}], "log_tail": "diate help.\n ... \n \nl.14 }\n \nThe filter expression you have supplied is invalid.\nSee the biblatex manual for details.\n\n\n! Package biblatex Error: Filter 'fil1' not found.\n\nSee the biblatex package documentation for explanation.\nType H for immediate help.\n ... \n \nl.15 \\printbibliography[filter=fil1]\n \nThe filter 'fil1' could not be found.\nUse \\defbibfilter to define it.\n\n\nLaTeX Warning: Empty bibliography on input line 15.\n\n[1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10878 strings out of 467745\n 252791 string characters out of 5422257\n 1138833 words of memory out of 5000000\n 39998 multiletter control sequences out of 15000+600000\n 627753 words of font info for 44 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 60i,5n,66p,693b,803s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (1 page, 748 bytes).\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 14: Argument of \\ifblank has an extra }.\n- line 15: Package biblatex Error: Filter 'fil1' not found.\n\nProject files:\n- bib2.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`bib2.bib` (full file, line-numbered):\n```\n1: @book{chomsky1993lectures,\n2: title={Lectures on government and binding: The Pisa lectures},\n3: author={Chomsky, Noam},\n4: number={9},\n5: year={1981},\n6: publisher={Walter de Gruyter},\n7: keyword = {test}\n8: }\n9: \n10: \n11: @article{reuland2016grammar,\n12: title={Grammar of binding in the languages of the world: Unity versus diversity},\n13: author={Reuland, Eric},\n14: journal={Cognition},\n15: volume={168},\n16: pages={370--379},\n17: year={2016},\n18: publisher={Elsevier}\n19: }\n20: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,12pt]{article}\n2: \\usepackage{fontspec}\n3: \\usepackage[backend=biber]{biblatex}\n4: \\addbibresource{bib2.bib}\n5: %---\n6: \n7: \\begin{document}\n8: \n9: \\section{Literature 1}\n10: % \\nocite{*}\n11: \n12: \\defbibfilter{fil1}{%\n13: keyword = test\n14: }\n15: \\printbibliography[filter=fil1]\n16: % \\printbibliography\n17: \n18: \\end{document}\n19: \n```\n\nCompile log (tail):\n```\ndiate help.\n ... \n \nl.14 }\n \nThe filter expression you have supplied is invalid.\nSee the biblatex manual for details.\n\n\n! Package biblatex Error: Filter 'fil1' not found.\n\nSee the biblatex package documentation for explanation.\nType H for immediate help.\n ... \n \nl.15 \\printbibliography[filter=fil1]\n \nThe filter 'fil1' could not be found.\nUse \\defbibfilter to define it.\n\n\nLaTeX Warning: Empty bibliography on input line 15.\n\n[1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10878 strings out of 467745\n 252791 string characters out of 5422257\n 1138833 words of memory out of 5000000\n 39998 multiletter control sequences out of 15000+600000\n 627753 words of font info for 44 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 60i,5n,66p,693b,803s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (1 page, 748 bytes).\n```", "target": "\n<<<<<<< SEARCH\n keyword = test\n=======\n keyword=test\n>>>>>>> REPLACE\n", "id": "texse_multi_739043", "doc": "texse_multi/739043", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/739043", "fix_answer": "top", "answer_id": 739059, "answer_score": 2, "fix_source": "snippet", "companions": ["bib2.bib"], "n_files": 2, "engine": "xelatex", "error_category": "Argument of \\CS has an extra }.", "changed_files": ["main.tex"], "question_id": 739043, "accepted_answer_id": null, "title": "Bibliography filter: Argument of \\ifblank has an extra }", "tags": ["biblatex", "bibliographies", "biber"], "score": 2, "created": "2025-03-16", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 14: Argument of \\ifblank has an extra }.\n- line 15: Package biblatex Error: Filter 'fil1' not found.\n\nProject files:\n- bib2.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,12pt]{article}\n2: \\usepackage{fontspec}\n3: \\usepackage[backend=biber]{biblatex}\n4: \\addbibresource{bib2.bib}\n5: %---\n6: \n7: \\begin{document}\n8: \n9: \\section{Literature 1}\n10: % \\nocite{*}\n11: \n12: \\defbibfilter{fil1}{%\n13: keyword = test\n14: }\n15: \\printbibliography[filter=fil1]\n16: % \\printbibliography\n17: \n18: \\end{document}\n19: \n```\n\nCompile log (tail):\n```\ndiate help.\n ... \n \nl.14 }\n \nThe filter expression you have supplied is invalid.\nSee the biblatex manual for details.\n\n\n! Package biblatex Error: Filter 'fil1' not found.\n\nSee the biblatex package documentation for explanation.\nType H for immediate help.\n ... \n \nl.15 \\printbibliography[filter=fil1]\n \nThe filter 'fil1' could not be found.\nUse \\defbibfilter to define it.\n\n\nLaTeX Warning: Empty bibliography on input line 15.\n\n[1\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10878 strings out of 467745\n 252791 string characters out of 5422257\n 1138833 words of memory out of 5000000\n 39998 multiletter control sequences out of 15000+600000\n 627753 words of font info for 44 fonts, out of 8000000 for 9000\n 1348 hyphenation exceptions out of 8191\n 60i,5n,66p,693b,803s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.xdv (1 page, 748 bytes).\n```", "question_url": "https://tex.stackexchange.com/q/739043", "answer_url": "https://tex.stackexchange.com/a/739059", "question_author": {"user_id": 376113, "name": "fruit_alchemist", "url": "https://tex.stackexchange.com/users/376113"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 89417, "name": "Marijn", "url": "https://tex.stackexchange.com/users/89417"}} {"bib": false, "lane": "project", "file_edits": [{"file": "goat.sty", "search": "\n\\newif\\ifmammalbirdfish\n\\mammalbirdfishfalse\n\\DeclareOption{mammalbirdfish}{%\n \\mammalbirdfishtrue}\n\\ExecuteOptions{mammalbirdfish}", "replace": "\n\\DeclareOption{mammalbirdfish}{\n\\makeatletter\n \\begingroup\n \\catcode`\\_=\\active\n \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}\n \\endgroup\n\\def\\subtextup|#1|{\\sb{\\textup{#1}}}\n\\AtBeginDocument{\\catcode`\\_=12 \\mathcode`\\_=32768}\n\\makeatother}\n\n\\ExecuteOptions{mammalbirdfish}", "type": "real"}, {"file": "goat.sty", "search": "\\ProcessOptions\n\\ifmammalbirdfish\n \\begingroup\n \\catcode`\\_=\\active\n \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}%\n \\endgroup\n \\def\\subtextup|#1|{\\sb{\\textup{#1}}}%\n \\AtBeginDocument{%\n \\catcode`\\_=12 \\mathcode`\\_=32768}%\n\\fi", "replace": "\\ProcessOptions", "type": "real"}], "reported_file": "goat.sty", "fix_files": ["goat.sty"], "single_shot_visible": true, "error_lines": [{"line": 14, "text": "Missing control sequence inserted.", "file": "goat.sty", "fileLabel": "goat.sty"}], "log_tail": "TeX Font Info: Checking defaults for OT1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 458 strings out of 467099\n 8580 string characters out of 5408265\n 435796 words of memory out of 5000000\n 29870 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,44p,145b,126s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11426 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `goat.sty` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- goat.sty line 14: Missing control sequence inserted.\n\nProject files:\n- goat.sty\n- main.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage{goat}\n4: \n5: \\begin{document}\n6: \n7: test\n8: \n9: \\end{document}\n10: \n```\n\nCurrent content of `goat.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[2014/05/01]\n2: \\ProvidesPackage{goat}[2014/10/16 goat]\n3: \n4: \\DeclareOption{mammalbirdfish}{\n5: \\makeatletter\n6: \\begingroup\n7: \\catcode`\\_=\\active\n8: \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}\n9: \\endgroup\n10: \\def\\subtextup|#1|{\\sb{\\textup{#1}}}\n11: \\AtBeginDocument{\\catcode`\\_=12 \\mathcode`\\_=32768}\n12: \\makeatother}\n13: \n14: \\ExecuteOptions{mammalbirdfish}\n15: \\ProcessOptions\n16: \n```\n\nCompile log (tail):\n```\nTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 458 strings out of 467099\n 8580 string characters out of 5408265\n 435796 words of memory out of 5000000\n 29870 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,44p,145b,126s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11426 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\ProcessOptions\n=======\n\\ProcessOptions\n\\ifmammalbirdfish\n \\begingroup\n \\catcode`\\_=\\active\n \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}%\n \\endgroup\n \\def\\subtextup|#1|{\\sb{\\textup{#1}}}%\n \\AtBeginDocument{%\n \\catcode`\\_=12 \\mathcode`\\_=32768}%\n\\fi\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\DeclareOption{mammalbirdfish}{\n\\makeatletter\n \\begingroup\n \\catcode`\\_=\\active\n \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}\n \\endgroup\n\\def\\subtextup|#1|{\\sb{\\textup{#1}}}\n\\AtBeginDocument{\\catcode`\\_=12 \\mathcode`\\_=32768}\n\\makeatother}\n\n\\ExecuteOptions{mammalbirdfish}\n=======\n\n\\newif\\ifmammalbirdfish\n\\mammalbirdfishfalse\n\\DeclareOption{mammalbirdfish}{%\n \\mammalbirdfishtrue}\n\\ExecuteOptions{mammalbirdfish}\n>>>>>>> REPLACE\n", "id": "texse_multi_207371", "doc": "texse_multi/207371", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/207371", "fix_answer": "top", "answer_id": 207377, "answer_score": 2, "fix_source": "snippet", "companions": ["goat.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing control sequence inserted.", "changed_files": ["goat.sty"], "question_id": 207371, "accepted_answer_id": 207431, "title": "Command not 'legale' in .sty file", "tags": ["package-writing"], "score": 3, "created": "2014-10-16", "error_message": "Missing control sequence inserted.", "prompt_v1": "The LaTeX file `goat.sty` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- goat.sty line 14: Missing control sequence inserted.\n\nProject files:\n- goat.sty\n- main.tex\n\nCurrent content of `goat.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[2014/05/01]\n2: \\ProvidesPackage{goat}[2014/10/16 goat]\n3: \n4: \\DeclareOption{mammalbirdfish}{\n5: \\makeatletter\n6: \\begingroup\n7: \\catcode`\\_=\\active\n8: \\protected\\gdef_{\\@ifnextchar|\\subtextup\\sb}\n9: \\endgroup\n10: \\def\\subtextup|#1|{\\sb{\\textup{#1}}}\n11: \\AtBeginDocument{\\catcode`\\_=12 \\mathcode`\\_=32768}\n12: \\makeatother}\n13: \n14: \\ExecuteOptions{mammalbirdfish}\n15: \\ProcessOptions\n16: \n```\n\nCompile log (tail):\n```\nTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 458 strings out of 467099\n 8580 string characters out of 5408265\n 435796 words of memory out of 5000000\n 29870 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,44p,145b,126s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11426 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/207371", "answer_url": "https://tex.stackexchange.com/a/207377", "question_author": {"user_id": 15874, "name": "Svend Tveskæg", "url": "https://tex.stackexchange.com/users/15874"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 39222, "name": "cfr", "url": "https://tex.stackexchange.com/users/39222"}} {"bib": false, "lane": "project", "file_edits": [{"file": "myclass.cls", "search": "\n\\ExplSyntaxOff\n\\RequirePackage[", "replace": "\n\\RequirePackage[", "type": "real"}, {"file": "myclass.cls", "search": "\n \\ExplSyntaxOn\n%\\ExplSyntaxOn", "replace": "\n%\\ExplSyntaxOn", "type": "real"}], "reported_file": "main.tex", "fix_files": ["myclass.cls"], "single_shot_visible": true, "error_lines": [{"line": 2, "text": "File ended while scanning use of \\Gm@sep@ratio.", "file": "main.tex", "fileLabel": null}], "log_tail": "/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n )\n(\\end occurred when \\iffalse on line 1018 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete) \nHere is how much of TeX's memory you used:\n 5810 strings out of 467099\n 92308 string characters out of 5408265\n 532474 words of memory out of 5000000\n 35131 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 99i,11n,107p,531b,248s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12653 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: File ended while scanning use of \\Gm@sep@ratio.\n\nProject files:\n- main.tex\n- myclass.cls\n\nOther project files (edit them with ):\n\n`myclass.cls` (full file, line-numbered):\n```\n1: \\RequirePackage{l3keys2e,xparse}\n2: \\ProvidesExplClass\n3: {myclass}\n4: {2013/08/25}\n5: {1.0}\n6: {myclass}\n7: \n8: \\LoadClass{memoir}\n9: \n10: \\RequirePackage{calc}\n11: \n12: % Fine if the ExplSyntax lines below are uncommented. Error otherwise.\n13: %\\ExplSyntaxOff\n14: \n15: \\ExplSyntaxOff\n16: \\RequirePackage[\n17: left = \\paperwidth * 3/16,\n18: hmarginratio = 1:1]{geometry}\n19: \n20: \\ExplSyntaxOn\n21: %\\ExplSyntaxOn\n22: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{myclass}\n2: \n3: \\begin{document}\n4: Some text.\n5: \\end{document}\n6: \n```\n\nCompile log (tail):\n```\n/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n )\n(\\end occurred when \\iffalse on line 1018 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete) \nHere is how much of TeX's memory you used:\n 5810 strings out of 467099\n 92308 string characters out of 5408265\n 532474 words of memory out of 5000000\n 35131 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 99i,11n,107p,531b,248s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12653 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n%\\ExplSyntaxOn\n=======\n\n \\ExplSyntaxOn\n%\\ExplSyntaxOn\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\RequirePackage[\n=======\n\n\\ExplSyntaxOff\n\\RequirePackage[\n>>>>>>> REPLACE\n", "id": "texse_multi_130485", "doc": "texse_multi/130485", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/130485", "fix_answer": "accepted", "answer_id": 130511, "answer_score": 5, "fix_source": "snippet", "companions": ["myclass.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["myclass.cls"], "question_id": 130485, "accepted_answer_id": 130511, "title": "Conflict between Geometry Ratio-Setting Keys and expl3 Syntax", "tags": ["geometry", "expl3"], "score": 7, "created": "2013-08-28", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: File ended while scanning use of \\Gm@sep@ratio.\n\nProject files:\n- main.tex\n- myclass.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{myclass}\n2: \n3: \\begin{document}\n4: Some text.\n5: \\end{document}\n6: \n```\n\nCompile log (tail):\n```\n/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2020/03/25>\n ***********\n )\n(\\end occurred when \\iffalse on line 1018 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete)\n(\\end occurred when \\ifx on line 2 was incomplete) \nHere is how much of TeX's memory you used:\n 5810 strings out of 467099\n 92308 string characters out of 5408265\n 532474 words of memory out of 5000000\n 35131 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 99i,11n,107p,531b,248s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 12653 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/130485", "answer_url": "https://tex.stackexchange.com/a/130511", "question_author": {"user_id": 15952, "name": "Marcos", "url": "https://tex.stackexchange.com/users/15952"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 73, "name": "Joseph Wright", "url": "https://tex.stackexchange.com/users/73"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass{book}\n\\usepackage[style=alphabetic]{biblatex}\n\\addbibresource{biblatex-examples.bib}\n\\nocite{angenendt,bertram,doody,gillies}\n% user-level test for skipbib enabled (e.g. related entry matuz:doody)\n\\makeatletter\n\\def\\ifskipbib{\\iftoggle{blx@skipbib}}\n\\makeatother\n\\def\\initlist{}\n\\forcsvlist{\\listadd\\initlist}{A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}\n\\forlistloop{\\DeclareBibliographyCategory}{\\initlist}\n\\renewcommand*{\\do}[1]{\\defbibheading{#1}{\\section*{#1}}}\n\\dolistloop{\\initlist}\n\\AtDataInput{\\ifskipbib{}{\\addtocategory{\\thefield{sortinit}}{\\thefield{entrykey}}}}", "replace": "\\documentclass[12pt,twoside,a4paper]{book}\n\\usepackage[utf8]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage{graphicx}\n\\usepackage{lmodern}\n\\usepackage{xspace}\n\\usepackage[style=authoryear-comp,hyperref,backend=biber,isbn=false,doi=false,url=false]{biblatex}\n\\bibliography{bib}\n\\title{}\n\\usepackage[francais]{babel}\n\\usepackage{csquotes}\n\\usepackage[colorlinks]{hyperref}", "type": "real"}, {"file": "main.tex", "search": "\\printbibheading\n\\bibbycategory", "replace": "\\nocite*\n\\printbibliography", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 4463, "text": "Package babel Error: Unknown option 'francais'.", "file": "main.tex", "fileLabel": null}], "log_tail": "ut4 = `main.out'.\n\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Empty bibliography on input line 17.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 17035 strings out of 467099\n 303862 string characters out of 5408265\n 1152805 words of memory out of 5000000\n 46224 multiletter control sequences out of 15000+600000\n 631782 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,67p,693b,405s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 1 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 4463: Package babel Error: Unknown option 'francais'.\n\nProject files:\n- bib.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,twoside,a4paper]{book}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage{graphicx}\n5: \\usepackage{lmodern}\n6: \\usepackage{xspace}\n7: \\usepackage[style=authoryear-comp,hyperref,backend=biber,isbn=false,doi=false,url=false]{biblatex}\n8: \\bibliography{bib}\n9: \\title{}\n10: \\usepackage[francais]{babel}\n11: \\usepackage{csquotes}\n12: \\usepackage[colorlinks]{hyperref}\n13: \n14: \\begin{document}\n15: \n16: \\nocite*\n17: \\printbibliography\n18: \\end{document}\n19: \n```\n\nCompile log (tail):\n```\nut4 = `main.out'.\n\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Empty bibliography on input line 17.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 17035 strings out of 467099\n 303862 string characters out of 5408265\n 1152805 words of memory out of 5000000\n 46224 multiletter control sequences out of 15000+600000\n 631782 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,67p,693b,405s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 1 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\nocite*\n\\printbibliography\n=======\n\\printbibheading\n\\bibbycategory\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\documentclass[12pt,twoside,a4paper]{book}\n\\usepackage[utf8]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage{graphicx}\n\\usepackage{lmodern}\n\\usepackage{xspace}\n\\usepackage[style=authoryear-comp,hyperref,backend=biber,isbn=false,doi=false,url=false]{biblatex}\n\\bibliography{bib}\n\\title{}\n\\usepackage[francais]{babel}\n\\usepackage{csquotes}\n\\usepackage[colorlinks]{hyperref}\n=======\n\\documentclass{book}\n\\usepackage[style=alphabetic]{biblatex}\n\\addbibresource{biblatex-examples.bib}\n\\nocite{angenendt,bertram,doody,gillies}\n% user-level test for skipbib enabled (e.g. related entry matuz:doody)\n\\makeatletter\n\\def\\ifskipbib{\\iftoggle{blx@skipbib}}\n\\makeatother\n\\def\\initlist{}\n\\forcsvlist{\\listadd\\initlist}{A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}\n\\forlistloop{\\DeclareBibliographyCategory}{\\initlist}\n\\renewcommand*{\\do}[1]{\\defbibheading{#1}{\\section*{#1}}}\n\\dolistloop{\\initlist}\n\\AtDataInput{\\ifskipbib{}{\\addtocategory{\\thefield{sortinit}}{\\thefield{entrykey}}}}\n>>>>>>> REPLACE\n", "id": "texse_multi_150068", "doc": "texse_multi/150068", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/150068", "fix_answer": "accepted", "answer_id": 150100, "answer_score": 31, "fix_source": "answer_doc", "companions": ["bib.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package babel Error: Unknown option 'X'.", "changed_files": ["main.tex"], "question_id": 150068, "accepted_answer_id": 150100, "title": "How to split the bibliography alphabetically?", "tags": ["biblatex", "subdividing"], "score": 30, "created": "2013-12-15", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 4463: Package babel Error: Unknown option 'francais'.\n\nProject files:\n- bib.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,twoside,a4paper]{book}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage{graphicx}\n5: \\usepackage{lmodern}\n6: \\usepackage{xspace}\n7: \\usepackage[style=authoryear-comp,hyperref,backend=biber,isbn=false,doi=false,url=false]{biblatex}\n8: \\bibliography{bib}\n9: \\title{}\n10: \\usepackage[francais]{babel}\n11: \\usepackage{csquotes}\n12: \\usepackage[colorlinks]{hyperref}\n13: \n14: \\begin{document}\n15: \n16: \\nocite*\n17: \\printbibliography\n18: \\end{document}\n19: \n```\n\nCompile log (tail):\n```\nut4 = `main.out'.\n\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Empty bibliography on input line 17.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 17035 strings out of 467099\n 303862 string characters out of 5408265\n 1152805 words of memory out of 5000000\n 46224 multiletter control sequences out of 15000+600000\n 631782 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,67p,693b,405s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 3 PDF objects out of 1000 (max. 8388607)\n 1 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/150068", "answer_url": "https://tex.stackexchange.com/a/150100", "question_author": {"user_id": 28474, "name": "ppr", "url": "https://tex.stackexchange.com/users/28474"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4483, "name": "Audrey", "url": "https://tex.stackexchange.com/users/4483"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\setcitestyle{numbers} %Cite as numbers or author-year.", "replace": "\\setcitestyle{number} %Cite as numbers or author-year.", "type": "real"}, {"file": "main.tex", "search": "%\\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references} % <========================================\n\\bibliography{references} % <===========================================", "replace": "\\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 6, "text": "Package natbib Error: Bibliography not compatible with author-year citations.", "file": "main.tex", "fileLabel": null}], "log_tail": " author-year citations.\n\n(natbib) Press to continue in numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.6 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 804 strings out of 467099\n 12788 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30209 multiletter control sequences out of 15000+600000\n 628934 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,39p,190b,120s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 37888 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: Package natbib Error: Bibliography not compatible with author-year citations.\n\nProject files:\n- main.tex\n- ‎⁨‎⁨‎⁨‎⁨‎⁨references.bib\n\nOther project files (edit them with ):\n\n`‎⁨‎⁨‎⁨‎⁨‎⁨references.bib` (full file, line-numbered):\n```\n1: @article{fakeref,\n2: title = {Fast-swimming sperm causes hurricanes in Africa},\n3: volume = {7},\n4: issn = {1234-5678},\n5: shorttitle = {Sperm and hurricanes},\n6: doi = {12.3456/j.ffs.2050.01.001},\n7: abstract = {Our results suggest that fast-swimming sperm from human males are the main cause of hurricanes on the west coast of Africa.},\n8: language = {eng},\n9: number = {2},\n10: journal = {Journal of Sperm and Climate Change},\n11: author = {Eggnowitz, Eggina and Spermirowski, Sperminald},\n12: month = apr,\n13: year = {2050},\n14: keywords = {Sperm,Hurricanes,Tornados,Eggs,Africa,Climate change,Global warming},\n15: pages = {77--100}\n16: }\n17: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[twocolumn,twoside,11pt]{article}\n2: \\usepackage{natbib} %Bibliography.\n3: \\setcitestyle{number} %Cite as numbers or author-year.\n4: \\bibliographystyle{vancouver} %Reference style.\n5: \n6: \\begin{document} %Everything that's written should come next.\n7: \\title{\\vspace{-1.0cm}\\textbf{\\Large{This is a title}}} %Title\n8: \n9: Random text here \\citep{fakeref}.\n10: \n11: \\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references}\n12: \n13: \\end{document}\n14: \n```\n\nCompile log (tail):\n```\nauthor-year citations.\n\n(natbib) Press to continue in numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.6 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 804 strings out of 467099\n 12788 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30209 multiletter control sequences out of 15000+600000\n 628934 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,39p,190b,120s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 37888 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references}\n=======\n%\\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references} % <========================================\n\\bibliography{references} % <===========================================\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\setcitestyle{number} %Cite as numbers or author-year.\n=======\n\\setcitestyle{numbers} %Cite as numbers or author-year.\n>>>>>>> REPLACE\n", "id": "texse_multi_480538", "doc": "texse_multi/480538", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/480538", "fix_answer": "accepted", "answer_id": 480553, "answer_score": 1, "fix_source": "answer_doc", "companions": ["‎⁨‎⁨‎⁨‎⁨‎⁨references.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package natbib Error: Bibliography not compatible with author-year cit", "changed_files": ["main.tex"], "question_id": 480538, "accepted_answer_id": 480553, "title": "Why is my bibliography not working?", "tags": ["bibliographies", "bibtex", "errors", "pdftex"], "score": 2, "created": "2019-03-20", "error_message": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: Package natbib Error: Bibliography not compatible with author-year citations.\n\nProject files:\n- main.tex\n- ‎⁨‎⁨‎⁨‎⁨‎⁨references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[twocolumn,twoside,11pt]{article}\n2: \\usepackage{natbib} %Bibliography.\n3: \\setcitestyle{number} %Cite as numbers or author-year.\n4: \\bibliographystyle{vancouver} %Reference style.\n5: \n6: \\begin{document} %Everything that's written should come next.\n7: \\title{\\vspace{-1.0cm}\\textbf{\\Large{This is a title}}} %Title\n8: \n9: Random text here \\citep{fakeref}.\n10: \n11: \\bibliography{‎⁨‎⁨‎⁨‎⁨‎⁨references}\n12: \n13: \\end{document}\n14: \n```\n\nCompile log (tail):\n```\nauthor-year citations.\n\n(natbib) Press to continue in numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.6 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 804 strings out of 467099\n 12788 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30209 multiletter control sequences out of 15000+600000\n 628934 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,39p,190b,120s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 37888 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/480538", "answer_url": "https://tex.stackexchange.com/a/480553", "question_author": {"user_id": 183912, "name": "williantafsilva", "url": "https://tex.stackexchange.com/users/183912"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 16550, "name": "Mensch", "url": "https://tex.stackexchange.com/users/16550"}} {"bib": false, "lane": "project", "file_edits": [{"file": "package.sty", "search": " \\RequirePackage{etoolbox}\n \\renewcommand*{\\do}[1]{%\n \\krdDeclareOption{#1}{\\PassOptionsToPackage{##1}{#1}}%", "replace": " \\RequirePackage{forarray}\n \\DeclareOptionX*{%\n \\PackageWarningNoLine{}{Cant understand option(s): \\CurrentOption}%", "type": "real"}, {"file": "package.sty", "search": " \\docsvlist{todonotes}", "replace": " \\CommandForEach{,}{%\n \\krdDeclareOption{#1}{\\PassOptionsToPackage{##1}{#1}}%\n }%\n {todonotes}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["package.sty"], "single_shot_visible": true, "error_lines": [{"line": 13, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": ".11 Base part for package epstopdf\nPackage epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\n\nPackage todonotes Warning: Trying to put a shadow below a todonote,but the load\nshadowlibrary option was not given when loadingthe todonotes package on input l\nine 7.\n\n\nLaTeX Warning: Marginpar on page 1 moved.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 13042 strings out of 467099\n 273974 string characters out of 5408265\n 658084 words of memory out of 5000000\n 42176 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,9n,121p,416b,944s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 12930 bytes).\nPDF statistics:\n 16 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- main.tex\n- package.sty\n\nOther project files (edit them with ):\n\n`package.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[1994/12/01]\n2: \\ProvidesPackage{package}\n3: [2012/09/18 Example]\n4: \\RequirePackage{keyreader}\n5: \\RequirePackage{etoolbox}\n6: \\renewcommand*{\\do}[1]{%\n7: \\krdDeclareOption{#1}{\\PassOptionsToPackage{##1}{#1}}%\n8: }\n9: \n10: \\docsvlist{todonotes}\n11: \n12: \\krdProcessOptions\n13: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[todonotes=shadow]{package}\n4: \\usepackage{todonotes}\n5: \n6: \\begin{document}\n7: \\todo{2 do}\n8: \\end{document}\n9: \n```\n\nCompile log (tail):\n```\n.11 Base part for package epstopdf\nPackage epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\n\nPackage todonotes Warning: Trying to put a shadow below a todonote,but the load\nshadowlibrary option was not given when loadingthe todonotes package on input l\nine 7.\n\n\nLaTeX Warning: Marginpar on page 1 moved.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 13042 strings out of 467099\n 273974 string characters out of 5408265\n 658084 words of memory out of 5000000\n 42176 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,9n,121p,416b,944s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 12930 bytes).\nPDF statistics:\n 16 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n \\CommandForEach{,}{%\n \\krdDeclareOption{#1}{\\PassOptionsToPackage{##1}{#1}}%\n }%\n {todonotes}\n=======\n \\docsvlist{todonotes}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\RequirePackage{forarray}\n \\DeclareOptionX*{%\n \\PackageWarningNoLine{}{Cant understand option(s): \\CurrentOption}%\n=======\n \\RequirePackage{etoolbox}\n \\renewcommand*{\\do}[1]{%\n \\krdDeclareOption{#1}{\\PassOptionsToPackage{##1}{#1}}%\n>>>>>>> REPLACE\n", "id": "texse_multi_73083", "doc": "texse_multi/73083", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/73083", "fix_answer": "accepted", "answer_id": 73176, "answer_score": 4, "fix_source": "snippet", "companions": ["package.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Missing \\CS{X}.", "changed_files": ["package.sty"], "question_id": 73083, "accepted_answer_id": 73176, "title": "More complicated key definitions in loops/for each statements", "tags": ["package-writing", "loops", "key-value"], "score": 8, "created": "2012-09-18", "error_message": "LaTeX Error: Missing \\begin{document}.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- main.tex\n- package.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[todonotes=shadow]{package}\n4: \\usepackage{todonotes}\n5: \n6: \\begin{document}\n7: \\todo{2 do}\n8: \\end{document}\n9: \n```\n\nCompile log (tail):\n```\n.11 Base part for package epstopdf\nPackage epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4\n85.\n\n(/usr/local/texlive/2026/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg\nFile: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv\ne\n))\n\nPackage todonotes Warning: Trying to put a shadow below a todonote,but the load\nshadowlibrary option was not given when loadingthe todonotes package on input l\nine 7.\n\n\nLaTeX Warning: Marginpar on page 1 moved.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 13042 strings out of 467099\n 273974 string characters out of 5408265\n 658084 words of memory out of 5000000\n 42176 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,9n,121p,416b,944s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 12930 bytes).\nPDF statistics:\n 16 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/73083", "answer_url": "https://tex.stackexchange.com/a/73176", "question_author": {"user_id": 18874, "name": "Percival Ulysses", "url": "https://tex.stackexchange.com/users/18874"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 18874, "name": "Percival Ulysses", "url": "https://tex.stackexchange.com/users/18874"}} {"bib": false, "lane": "project", "file_edits": [{"file": "sop.cls", "search": "\\newcommand{\\sopchaptertitle}[1]{\\def\\@sopchaptertitle{#1}}\n\\newcommand{\\sopchapternumber}[1]{\\def\\@sopchapternumber{#1}}\n%%% Drop before title\n\\setlength\\droptitle{12cm}\n%%% Define the internal variable \\@title to be the supplied data\n\\renewcommand\\maketitlehooka{%\n \\def\\@title{\\@sopchaptertitle\\ \\@sopchapternumber}}\n%%% No author field, so \\maketitlehookb gobbles what comes after it\n\\renewcommand\\maketitlehookb[1]{}\n%%% No date field, so \\maketitlehookc gobbles what comes after it\n\\renewcommand\\maketitlehookc[1]{}\n%%% Formatting the title\n\\pretitle{\\centering\\sffamily\\LARGE}\n%%% Space after the title\n\\posttitle{\\par\\vspace{3cm}}\n%%% The rest of the class", "replace": "\\newcommand{\\sopchaptertitle}[1]{\\newcommand{\\thesopchaptertitle}{#1}}\n\\newcommand{\\sopchapternumber}[1]{\\newcommand{\\thesopchapternumber}{#1}}\n\\let\\oldtitle\\title\n\\renewcommand{\\title}[1]{\\oldtitle{#1}\\newcommand{\\mythetitle}{#1}}\n\\let\\oldpretitle\\pretitle\n\\renewcommand{\\pretitle}[1]{\\oldpretitle{#1}\\newcommand{\\mythepretitle}{#1}}\n\\let\\oldposttitle\\posttitle\n\\renewcommand{\\posttitle}[1]{\\oldposttitle{#1}\\newcommand{\\mytheposttitle}{#1}}\n\\renewcommand{\\maketitle}{%\n\\mythepretitle{\\setlength{\\droptitle}{12.0cm}\\begin{center}\\LARGE}\n\\mythetitle{\\thesopchaptertitle\\ \\thesopchapternumber}\n\\mytheposttitle{\\par\\end{center}\\vskip 0.5em}\n}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["sop.cls"], "single_shot_visible": true, "error_lines": [{"line": 11, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "my insertion and my current dilemma will both disappear.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n[2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: CA98BEBB367F8E0280B83A5DA60A230A;338.\n ) \nHere is how much of TeX's memory you used:\n 8500 strings out of 467099\n 133809 string characters out of 5408265\n 558804 words of memory out of 5000000\n 37790 multiletter control sequences out of 15000+600000\n 628625 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,296b,441s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (2 pages, 36861 bytes).\nPDF statistics:\n 35 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Undefined control sequence.\n\nProject files:\n- main.tex\n- sop.cls\n\nOther project files (edit them with ):\n\n`sop.cls` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}\n2: \\ProvidesClass{sop}\n3: \n4: % Passes and class options to the underlying article class\n5: \\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{article}}\n6: \\ProcessOptions\n7: \\LoadClass{article}\n8: \n9: % Redefine the page margins\n10: \\RequirePackage[left=1in,right=1in,top=.75in,bottom=.75in]{geometry}\n11: \n12: % Modifications to the section titles\n13: \\renewcommand*\\thesection{\\arabic{section}.0}\n14: \\renewcommand*\\thesubsection{\\arabic{section}.\\arabic{subsection}}\n15: \\renewcommand*\\thesubsubsection{\\arabic{section}.\\arabic{subsection}.\\arabic{subsubsection}}\n16: \n17: % Title block\n18: \\RequirePackage{titling}\n19: \\newcommand{\\sopchaptertitle}[1]{\\def\\@sopchaptertitle{#1}}\n20: \\newcommand{\\sopchapternumber}[1]{\\def\\@sopchapternumber{#1}}\n21: %%% Drop before title\n22: \\setlength\\droptitle{12cm}\n23: %%% Define the internal variable \\@title to be the supplied data\n24: \\renewcommand\\maketitlehooka{%\n25: \\def\\@title{\\@sopchaptertitle\\ \\@sopchapternumber}}\n26: %%% No author field, so \\maketitlehookb gobbles what comes after it\n27: \\renewcommand\\maketitlehookb[1]{}\n28: %%% No date field, so \\maketitlehookc gobbles what comes after it\n29: \\renewcommand\\maketitlehookc[1]{}\n30: %%% Formatting the title\n31: \\pretitle{\\centering\\sffamily\\LARGE}\n32: %%% Space after the title\n33: \\posttitle{\\par\\vspace{3cm}}\n34: %%% The rest of the class\n35: %.... a page N of M section (which works)\n36: % For easier customization of itemized, enumerated, and other lists\n37: \\RequirePackage{enumitem}\n38: % For hyperlinked cross-references\n39: \\RequirePackage{hyperref}\n40: % Ensure first page is correct style\n41: \\thispagestyle{plain}\n42: % That's all, folks!\n43: \\endinput\n44: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt]{sop}\n2: %\n3: % SOP Standard Form Data\n4: \\sopchaptertitle{This is my procedure title}\n5: \\sopchapternumber{this is my procedure number D.4}\n6: %...more of the above\n7: %Here begins the actual document\n8: \\begin{document}\n9: \n10: \\maketitle\n11: \n12: \\section{Main Title}\n13: \n14: \\section{Approval}\n15: Approval1....\\makebox[1.5in]{\\hrulefill}\\\\\\vspace{1.5in}\n16: Approval2....\\makebox[1.5in]{\\hrulefill}\n17: \n18: \\newpage\n19: \n20: \\section{Purpose and Discussion}\n21: %...more of the above...\n22: \\end{document}\n23: \n```\n\nCompile log (tail):\n```\nmy insertion and my current dilemma will both disappear.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n[2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: CA98BEBB367F8E0280B83A5DA60A230A;338.\n ) \nHere is how much of TeX's memory you used:\n 8500 strings out of 467099\n 133809 string characters out of 5408265\n 558804 words of memory out of 5000000\n 37790 multiletter control sequences out of 15000+600000\n 628625 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,296b,441s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (2 pages, 36861 bytes).\nPDF statistics:\n 35 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\newcommand{\\sopchaptertitle}[1]{\\newcommand{\\thesopchaptertitle}{#1}}\n\\newcommand{\\sopchapternumber}[1]{\\newcommand{\\thesopchapternumber}{#1}}\n\\let\\oldtitle\\title\n\\renewcommand{\\title}[1]{\\oldtitle{#1}\\newcommand{\\mythetitle}{#1}}\n\\let\\oldpretitle\\pretitle\n\\renewcommand{\\pretitle}[1]{\\oldpretitle{#1}\\newcommand{\\mythepretitle}{#1}}\n\\let\\oldposttitle\\posttitle\n\\renewcommand{\\posttitle}[1]{\\oldposttitle{#1}\\newcommand{\\mytheposttitle}{#1}}\n\\renewcommand{\\maketitle}{%\n\\mythepretitle{\\setlength{\\droptitle}{12.0cm}\\begin{center}\\LARGE}\n\\mythetitle{\\thesopchaptertitle\\ \\thesopchapternumber}\n\\mytheposttitle{\\par\\end{center}\\vskip 0.5em}\n}\n=======\n\\newcommand{\\sopchaptertitle}[1]{\\def\\@sopchaptertitle{#1}}\n\\newcommand{\\sopchapternumber}[1]{\\def\\@sopchapternumber{#1}}\n%%% Drop before title\n\\setlength\\droptitle{12cm}\n%%% Define the internal variable \\@title to be the supplied data\n\\renewcommand\\maketitlehooka{%\n \\def\\@title{\\@sopchaptertitle\\ \\@sopchapternumber}}\n%%% No author field, so \\maketitlehookb gobbles what comes after it\n\\renewcommand\\maketitlehookb[1]{}\n%%% No date field, so \\maketitlehookc gobbles what comes after it\n\\renewcommand\\maketitlehookc[1]{}\n%%% Formatting the title\n\\pretitle{\\centering\\sffamily\\LARGE}\n%%% Space after the title\n\\posttitle{\\par\\vspace{3cm}}\n%%% The rest of the class\n>>>>>>> REPLACE\n", "id": "texse_multi_101340", "doc": "texse_multi/101340", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/101340", "fix_answer": "accepted", "answer_id": 101366, "answer_score": 5, "fix_source": "snippet", "companions": ["sop.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["sop.cls"], "question_id": 101340, "accepted_answer_id": 101366, "title": "Building a title block for a class", "tags": ["macros", "titles", "titling"], "score": 7, "created": "2013-03-07", "error_message": "Missing = inserted for \\ifnum.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Undefined control sequence.\n\nProject files:\n- main.tex\n- sop.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[10pt]{sop}\n2: %\n3: % SOP Standard Form Data\n4: \\sopchaptertitle{This is my procedure title}\n5: \\sopchapternumber{this is my procedure number D.4}\n6: %...more of the above\n7: %Here begins the actual document\n8: \\begin{document}\n9: \n10: \\maketitle\n11: \n12: \\section{Main Title}\n13: \n14: \\section{Approval}\n15: Approval1....\\makebox[1.5in]{\\hrulefill}\\\\\\vspace{1.5in}\n16: Approval2....\\makebox[1.5in]{\\hrulefill}\n17: \n18: \\newpage\n19: \n20: \\section{Purpose and Discussion}\n21: %...more of the above...\n22: \\end{document}\n23: \n```\n\nCompile log (tail):\n```\nmy insertion and my current dilemma will both disappear.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n[2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: CA98BEBB367F8E0280B83A5DA60A230A;338.\n ) \nHere is how much of TeX's memory you used:\n 8500 strings out of 467099\n 133809 string characters out of 5408265\n 558804 words of memory out of 5000000\n 37790 multiletter control sequences out of 15000+600000\n 628625 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,296b,441s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>\nOutput written on main.pdf (2 pages, 36861 bytes).\nPDF statistics:\n 35 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/101340", "answer_url": "https://tex.stackexchange.com/a/101366", "question_author": {"user_id": 26863, "name": "Matt", "url": "https://tex.stackexchange.com/users/26863"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "biblio.bib", "search": " author = {H{\\aa}rd{ af }Segerstad, Ylva},", "replace": " author = {{H{\\aa}rd af Segerstad}, Ylva},\n //author = {{H\\r{a}rd af Segerstad}, Ylva},\n //author = {{Hard af Segerstad}, Ylva},\n //author = {H{\\aa}rd af Segerstad, Ylva},", "type": "real"}], "reported_file": "main.tex", "fix_files": ["biblio.bib"], "single_shot_visible": true, "error_lines": [{"line": 37, "text": "Argument of \\a has an extra }.", "file": null, "fileLabel": "main.bbl"}, {"line": 7, "text": "Argument of \\a has an extra }.", "file": "main.tex", "fileLabel": null}, {"line": 9, "text": "Argument of \\a has an extra }.", "file": "main.tex", "fileLabel": null}], "log_tail": " problem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\a was complete.\n \n \\par \nl.9 \\end\n {document}\nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10660 strings out of 467099\n 209098 string characters out of 5408265\n 849909 words of memory out of 5000000\n 39954 multiletter control sequences out of 15000+600000\n 628680 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,1871b,1743s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (3 pages, 26856 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 37: Argument of \\a has an extra }.\n- line 7: Argument of \\a has an extra }.\n- line 9: Argument of \\a has an extra }.\n\nProject files:\n- biblio.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`biblio.bib` (full file, line-numbered):\n```\n1: @phdthesis{HA:02,\n2: author = {H{\\aa}rd{ af }Segerstad, Ylva},\n3: year = {2002},\n4: }\n5: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{book}\n2: \\usepackage[english]{babel}\n3: \\usepackage{csquotes}\n4: \\usepackage[style=alphabetic,bibstyle=alphabetic,backend=bibtex8]{biblatex}\n5: \\bibliography{biblio}\n6: \\begin{document}\n7: Referenz zu \\cite{HA:02}.\n8: \\printbibliography\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\nproblem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\a was complete.\n \n \\par \nl.9 \\end\n {document}\nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10660 strings out of 467099\n 209098 string characters out of 5408265\n 849909 words of memory out of 5000000\n 39954 multiletter control sequences out of 15000+600000\n 628680 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,1871b,1743s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (3 pages, 26856 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n author = {{H{\\aa}rd af Segerstad}, Ylva},\n //author = {{H\\r{a}rd af Segerstad}, Ylva},\n //author = {{Hard af Segerstad}, Ylva},\n //author = {H{\\aa}rd af Segerstad, Ylva},\n=======\n author = {H{\\aa}rd{ af }Segerstad, Ylva},\n>>>>>>> REPLACE\n", "id": "texse_multi_95921", "doc": "texse_multi/95921", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/95921", "fix_answer": "top", "answer_id": 95922, "answer_score": 2, "fix_source": "snippet", "companions": ["biblio.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Argument of \\CS has an extra }.", "changed_files": ["biblio.bib"], "question_id": 95921, "accepted_answer_id": null, "title": "LaTeX + Biblatex: Author and Special Char result in an \"Extra }\"", "tags": ["biblatex"], "score": 3, "created": "2013-01-29", "error_message": "Argument of \\OT1\\r has an extra }.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 37: Argument of \\a has an extra }.\n- line 7: Argument of \\a has an extra }.\n- line 9: Argument of \\a has an extra }.\n\nProject files:\n- biblio.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{book}\n2: \\usepackage[english]{babel}\n3: \\usepackage{csquotes}\n4: \\usepackage[style=alphabetic,bibstyle=alphabetic,backend=bibtex8]{biblatex}\n5: \\bibliography{biblio}\n6: \\begin{document}\n7: Referenz zu \\cite{HA:02}.\n8: \\printbibliography\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\nproblem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\a was complete.\n \n \\par \nl.9 \\end\n {document}\nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n[3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 10660 strings out of 467099\n 209098 string characters out of 5408265\n 849909 words of memory out of 5000000\n 39954 multiletter control sequences out of 15000+600000\n 628680 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,1871b,1743s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (3 pages, 26856 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/95921", "answer_url": "https://tex.stackexchange.com/a/95922", "question_author": {"user_id": 25210, "name": "user25210", "url": "https://tex.stackexchange.com/users/25210"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4483, "name": "Audrey", "url": "https://tex.stackexchange.com/users/4483"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\AtEndPreamble{\\usepackage{cleveref}}", "replace": "\\usepackage{cleveref}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 10, "text": "Package cleveref Error: cleveref must be loaded after hyperref!.", "file": "main.tex", "fileLabel": null}], "log_tail": "X Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 18974 strings out of 467099\n 389199 string characters out of 5408265\n 806036 words of memory out of 5000000\n 48131 multiletter control sequences out of 15000+600000\n 631795 words of font info for 54 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 96i,5n,95p,294b,1046s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 48977 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: Package cleveref Error: cleveref must be loaded after hyperref!.\n\nProject files:\n- MastersDoctoralThesis.cls\n- main.tex\n\nOther project files (edit them with ):\n\n`MastersDoctoralThesis.cls` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}[1996/12/01]\n2: \\newcommand{\\classname}{MastersDoctoralThesis}\n3: \\ProvidesClass{\\classname}[2016/11/22 v1.5 LaTeXTemplates.com]\n4: \\providecommand{\\baseclass}{book}\n5: \\RequirePackage{etoolbox}\n6: \\RequirePackage{xparse}\n7: \\newbool{hyperrefsupport}\n8: \\booltrue{hyperrefsupport}\n9: \\newbool{headsepline}\n10: \n11: \\DeclareOption{nohyperref}{\\boolfalse{hyperrefsupport}}\n12: \\DeclareOption*{\\PassOptionsToClass{\\CurrentOption}{\\baseclass}}\n13: \n14: \\ProcessOptions\\relax\n15: \n16: \\LoadClass{\\baseclass}\n17: \n18: %----------------------------------------------------------------------------------------\n19: % REQUIRED PACKAGES\n20: %----------------------------------------------------------------------------------------\n21: \n22: \\RequirePackage{babel} % Required for automatically changing names of document elements to languages besides english\n23: \n24: \\RequirePackage{scrbase} % Required for handling language-dependent names of sections/document elements\n25: \n26: \\RequirePackage{scrhack} % Loads fixes for various packages\n27: \n28: \\RequirePackage{setspace} % Required for changing line spacing\n29: \n30: \\RequirePackage{longtable} % Required for tables that span multiple pages (used in the symbols, abbreviations and physical constants pages)\n31: \n32: \\RequirePackage{siunitx} % Required for \\SI commands\n33: \n34: \\RequirePackage{graphicx} % Required to include images\n35: \\graphicspath{{Figures/}{./}} % Specifies where to look for included images\n36: \n37: \\RequirePackage{booktabs} % Required for better table rules\n38: \n39: \\RequirePackage{caption} % Required for customising the captions\n40: \\captionsetup{justification=centerlast,font=small,labelfont=sc,margin=50pt}\n41: \n42: %----------------------------------------------------------------------------------------\n43: % MARGINS\n44: %----------------------------------------------------------------------------------------\n45: \n46: \\RequirePackage{geometry}\n47: \\geometry{\n48: headheight=27.2pt,\n49: includehead,\n50: includefoot\n51: }\n52: \n53: \\raggedbottom\n54: \n55: \n56: %----------------------------------------------------------------------------------------\n57: \n58: \\ifbool{hyperrefsupport}{% If the nohyperref class option has not been specified\n59: \\AtEndPreamble{\\RequirePackage{hyperref}\n60: \\hypersetup{\n61: pdfpagemode={UseOutlines},\n62: bookmarksopen=true,\n63: bookmarksopenlevel=0,\n64: hypertexnames=false,\n65: colorlinks=true,% Set to false to disable coloring links\n66: citecolor=blue,% The color of citations\n67: linkcolor=blue,% The color of references to document elements (sections, figures, etc)\n68: urlcolor=blue,% The color of hyperlinks (URLs)\n69: pdfstartview={FitV},\n70: unicode,\n71: breaklinks=true,\n72: }\n73: \n74: \\pdfstringdefDisableCommands{% If there is an explicit linebreak in a section heading (or anything printed to the pdf-bookmarks), it is replaced by a space\n75: \\let\\\\\\space%\n76: }\n77: }\n78: }{%nothing\n79: }\n80: \n81: %----------------------------------------------------------------------------------------\n82: \n83: \\endinput\n84: % lazyLizardTracer\n85: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[\n2: 11pt, % The default document font size, options: 10pt, 11pt, 12pt\n3: english, % ngerman for German\n4: singlespacing, % Single line spacing, alternatives: onehalfspacing or doublespacing\n5: ]{MastersDoctoralThesis} % The class file specifying the document structure\n6: \n7: \\usepackage{amsmath,tensor} % matrix, vector\n8: \\usepackage{cleveref}\n9: \n10: \\begin{document}\n11: \n12: \\begin{equation}\\label{eq:a}\n13: {{\\rm{a}}_{r,c,l}} \\in \\{ 0,1, \\ldots ,n\\}\n14: \\end{equation}\n15: \n16: Just ref \\ref{eq:a}\n17: \n18: Clever \\Cref{eq:a}\n19: \n20: \\end{document}\n21: \n```\n\nCompile log (tail):\n```\nX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 18974 strings out of 467099\n 389199 string characters out of 5408265\n 806036 words of memory out of 5000000\n 48131 multiletter control sequences out of 15000+600000\n 631795 words of font info for 54 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 96i,5n,95p,294b,1046s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 48977 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\usepackage{cleveref}\n=======\n\\AtEndPreamble{\\usepackage{cleveref}}\n>>>>>>> REPLACE\n", "id": "texse_multi_485107", "doc": "texse_multi/485107", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/485107", "fix_answer": "accepted", "answer_id": 485116, "answer_score": 3, "fix_source": "answer_doc", "companions": ["MastersDoctoralThesis.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "Package cleveref Error: cleveref must be loaded after hyperref!.", "changed_files": ["main.tex"], "question_id": 485107, "accepted_answer_id": 485116, "title": "Cleveref and equations label package conflict", "tags": ["amsmath", "cleveref"], "score": 2, "created": "2019-04-16", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: Package cleveref Error: cleveref must be loaded after hyperref!.\n\nProject files:\n- MastersDoctoralThesis.cls\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[\n2: 11pt, % The default document font size, options: 10pt, 11pt, 12pt\n3: english, % ngerman for German\n4: singlespacing, % Single line spacing, alternatives: onehalfspacing or doublespacing\n5: ]{MastersDoctoralThesis} % The class file specifying the document structure\n6: \n7: \\usepackage{amsmath,tensor} % matrix, vector\n8: \\usepackage{cleveref}\n9: \n10: \\begin{document}\n11: \n12: \\begin{equation}\\label{eq:a}\n13: {{\\rm{a}}_{r,c,l}} \\in \\{ 0,1, \\ldots ,n\\}\n14: \\end{equation}\n15: \n16: Just ref \\ref{eq:a}\n17: \n18: Clever \\Cref{eq:a}\n19: \n20: \\end{document}\n21: \n```\n\nCompile log (tail):\n```\nX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 18974 strings out of 467099\n 389199 string characters out of 5408265\n 806036 words of memory out of 5000000\n 48131 multiletter control sequences out of 15000+600000\n 631795 words of font info for 54 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 96i,5n,95p,294b,1046s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 48977 bytes).\nPDF statistics:\n 39 PDF objects out of 1000 (max. 8388607)\n 25 compressed objects within 1 object stream\n 3 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/485107", "answer_url": "https://tex.stackexchange.com/a/485116", "question_author": {"user_id": 34958, "name": "Mzq", "url": "https://tex.stackexchange.com/users/34958"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 185916, "name": "ufo", "url": "https://tex.stackexchange.com/users/185916"}} {"bib": true, "lane": "project", "file_edits": [{"file": "bibfile.bib", "search": "howpublished = {\\href{http://en.wikipedia.org/wiki/Pr\\%C3\\%A9lude_\\%C3\\%A0_l'apr\\%C3\\%A8s-midi_d'un_faune}{en.wikipedia.org/wiki/Prélude\\_à\\_l'après-midi\\_d'un\\_faune}},", "replace": "howpublished = {\\href{http://en.wikipedia.org/wiki/Pr%C3%A9lude_%C3%A0_l'apr%C3%A8s-midi_d'un_faune}{en.wikipedia.org/wiki/Prélude\\_à\\_l'après-midi\\_d'un\\_faune}},", "type": "real"}], "reported_file": "main.tex", "fix_files": ["bibfile.bib"], "single_shot_visible": true, "error_lines": [{"line": 7, "text": "File ended while scanning use of \\field.", "file": "main.tex", "fileLabel": null}], "log_tail": "****\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 7 (\\begingroup)\n### semi simple group (level 1) entered at line 7 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14937 strings out of 467099\n 265487 string characters out of 5408265\n 1106722 words of memory out of 5000000\n 44185 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,693b,1156s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 7294 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 7: File ended while scanning use of \\field.\n\nProject files:\n- bibfile.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`bibfile.bib` (full file, line-numbered):\n```\n1: @misc{wiki3,\n2: author = {Wikipedia},\n3: title = {Prélude à l’après-midi d’un faune},\n4: howpublished = {\\href{http://en.wikipedia.org/wiki/Pr\\%C3\\%A9lude_\\%C3\\%A0_l'apr\\%C3\\%A8s-midi_d'un_faune}{en.wikipedia.org/wiki/Prélude\\_à\\_l'après-midi\\_d'un\\_faune}},\n5: note = \"[Zugriff am 12. Mai 2013 um 19:35]\"\n6: }\n7: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \\usepackage[style=numeric, backend=biber]{biblatex}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage[utf8]{inputenc}\n5: \\addbibresource{bibfile.bib}\n6: \\usepackage{hyperref}\n7: \\begin{document}\n8: EXAMPLE CONTENT\n9: \\nocite{*}\n10: \\printbibliography\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\n****\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 7 (\\begingroup)\n### semi simple group (level 1) entered at line 7 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14937 strings out of 467099\n 265487 string characters out of 5408265\n 1106722 words of memory out of 5000000\n 44185 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,693b,1156s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 7294 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\nhowpublished = {\\href{http://en.wikipedia.org/wiki/Pr%C3%A9lude_%C3%A0_l'apr%C3%A8s-midi_d'un_faune}{en.wikipedia.org/wiki/Prélude\\_à\\_l'après-midi\\_d'un\\_faune}},\n=======\nhowpublished = {\\href{http://en.wikipedia.org/wiki/Pr\\%C3\\%A9lude_\\%C3\\%A0_l'apr\\%C3\\%A8s-midi_d'un_faune}{en.wikipedia.org/wiki/Prélude\\_à\\_l'après-midi\\_d'un\\_faune}},\n>>>>>>> REPLACE\n", "id": "texse_multi_117046", "doc": "texse_multi/117046", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/117046", "fix_answer": "accepted", "answer_id": 117065, "answer_score": 5, "fix_source": "snippet", "companions": ["bibfile.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["bibfile.bib"], "question_id": 117046, "accepted_answer_id": 117065, "title": "pdflatex+ biblatex + biber and special characters produce error", "tags": ["biblatex", "hyperref", "biber"], "score": 3, "created": "2013-05-31", "error_message": "File ended while scanning use of \\field.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 7: File ended while scanning use of \\field.\n\nProject files:\n- bibfile.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \\usepackage[style=numeric, backend=biber]{biblatex}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage[utf8]{inputenc}\n5: \\addbibresource{bibfile.bib}\n6: \\usepackage{hyperref}\n7: \\begin{document}\n8: EXAMPLE CONTENT\n9: \\nocite{*}\n10: \\printbibliography\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\n****\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n )\n(\\end occurred inside a group at level 3)\n\n### semi simple group (level 3) entered at line 20 (\\begingroup)\n### semi simple group (level 2) entered at line 7 (\\begingroup)\n### semi simple group (level 1) entered at line 7 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 14937 strings out of 467099\n 265487 string characters out of 5408265\n 1106722 words of memory out of 5000000\n 44185 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,693b,1156s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 7294 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 2 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/117046", "answer_url": "https://tex.stackexchange.com/a/117065", "question_author": {"user_id": 31562, "name": "GEO", "url": "https://tex.stackexchange.com/users/31562"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 27635, "name": "karlkoeller", "url": "https://tex.stackexchange.com/users/27635"}} {"bib": true, "lane": "project", "file_edits": [{"file": "bib.bib", "search": " author={{ACI Committee 318} and {American Concrete Institute}},\n sortkey={ACICommittee318},\n isbn={9780870317453},\n year={2011},", "replace": " author={ACI Committee 318 and American Concrete Institute},\n isbn={9780870317453},\n year={2011},", "type": "real"}], "reported_file": "main.tex", "fix_files": ["bib.bib"], "single_shot_visible": true, "error_lines": [{"line": 53, "text": "Package biblatex Error: Category '3' not declared.", "file": null, "fileLabel": "main.bbl"}], "log_tail": "has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 39256 strings out of 467099\n 901132 string characters out of 5408265\n 1804432 words of memory out of 5000000\n 68050 multiletter control sequences out of 15000+600000\n 635678 words of font info for 67 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,12n,118p,700b,1346s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\npdfTeX warning (dest): name{cite.0@aci2011building} has been referenced but doe\ns not exist, replaced by a fixed one\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb><\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>\nOutput written on main.pdf (3 pages, 89869 bytes).\nPDF statistics:\n 78 PDF objects out of 1000 (max. 8388607)\n 60 compressed objects within 1 object stream\n 14 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 53: Package biblatex Error: Category '3' not declared.\n\nProject files:\n- bib.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`bib.bib` (full file, line-numbered):\n```\n1: @book{morales,\n2: author = {R. Morales},\n3: title = {Diseño Estructural Sismorresistente},\n4: publisher = {Fondo Editorial ICG},\n5: year = {2002},\n6: address = {Lima},\n7: pages = {4-5},\n8: }\n9: \n10: @book{macgregor,\n11: author = {J. MacGregor and J. Wight},\n12: title = {Reinforced Concrete Mechanics and Design},\n13: publisher = {Prentice Hall},\n14: date = {2011},\n15: location = {Upper Saddle River, New Jersey},\n16: pages = {71-71},\n17: }\n18: \n19: @report{pfeiffer,\n20: author = {Michael J. Pfeiffer, and David Darwin},\n21: title = {Joint Design for Reinforced Concrete Buildings},\n22: institution = {University of Kansas Structural Engineering and Materials Laboratory},\n23: date = {1987},\n24: location = {Lawrence, KS},\n25: pages = {73},\n26: }\n27: \n28: @manual{seae,\n29: author = {Departamento de Tecnología Industrial},\n30: title = {Código Técnico de la Edificación. Documento Básico SE-AE Seguridad Estructural: Acciones en la Edificación},\n31: location = {Madrid},\n32: date = {2007},\n33: pages = {9},\n34: }\n35: \n36: @manual{bael,\n37: title = {Règles de techniques de conception et de calcul des ouvrages et construction en béton armé suivant la méthode des états limites},\n38: author = {Ministère de l'Equipement des Transports et du Logement},\n39: location = {Paris},\n40: date = {1999},\n41: pages = {86-87},\n42: }\n43: \n44: @book{is,\n45: title = {Plain and Reinforced Concrete - Code of Practice IS 456-2000},\n46: edition = {Fourth},\n47: author = {Bureau of Indian Standards},\n48: location = {Nueva Delhi},\n49: date = {2000},\n50: pages = {86-87},\n51: }\n52: \n53: @report{pca-joints,\n54: title = {Buildings Movements and Joints},\n55: author = {Portland Cement Association},\n56: location = {Skokie, Illinois},\n57: date = {1983},\n58: pages = {36},\n59: }\n60: \n61: @report{nationalacademy-joints,\n62: title = {Expansion Joints in Buildings},\n63: author = {Standing Commitee on Structural Engineering of the Federal Construction Council},\n64: number = {Technical Report No. 65},\n65: institution = {National Academy of Sciences},\n66: location = {Washington},\n67: date = {1974},\n68: pagetotal = {43},\n69: }\n70: \n71: @book{vallecilla,\n72: author = {C. Ramiro Vallecilla},\n73: title = {Fuerzas Sísmicas Principios y Aplicaciones NSR-98},\n74: publisher = {Editorial Bauen},\n75: location = {Bogotá},\n76: date = {2003},\n77: pages = {192-201},\n78: }\n79: \n80: @online{senhami,\n81: author = {Servicion Nacional de Meteorología e Hidrología},\n82: organization = {Ministerio del Ambiente},\n83: title = {Datos Históricos},\n84: url = {http://www.senamhi.gob.pe/main_mapa.php?t=dHi},\n85: }\n86: \n87: @manual{e030,\n88: title = {Reglamento Nacional de Edificaciones, Norma E.030 Diseño Sismorresistente},\n89: organization = {Ministerio de Vivienda, Construcción y Saneamiento},\n90: location = {Lima},\n91: date = {2006},\n92: }\n93: \n94: @book{paulay1992seismic,\n95: title={Seismic Design of Reinforced Concrete and Masonry Buildings},\n96: author={Paulay, T. and Priestley, M.J.N.},\n97: isbn={9780471549154},\n98: lccn={lc91034862},\n99: series={Pure and applied mathematics},\n100: year={1992},\n101: publisher={Wiley}\n102: }\n103: \n104: @book{priestley2003myths,\n105: title={Myths and fallacies in earthquake engineering, revisited},\n106: author={Priestley, M.J.N. and Society of Earthquake and Civil Engineering Dynamics},\n107: lccn={2006387620},\n108: series={Monografia Rose School},\n109: year={2003},\n110: publisher={IUSS Press}\n111: }\n112: \n113: @book{priestley2007displacement,\n114: title={Displacement-based Seismic Design of Structures},\n115: author={Priestley, M.J.N. and Calvi, G.M. and Kowalsky, M.J.},\n116: isbn={9788861980006},\n117: lccn={2008382667},\n118: year={2007},\n119: publisher={IUSS Press}\n120: }\n121: \n122: @thesis{Rolando,\n123: title= {Seismic Design of Asymmetric Ductile Systems},\n124: author= {Castillo, Rolando},\n125: publisher= {University of Canterbury. Department of Civil Engineering},\n126: year= {2004},\n127: pagetotal= {340},\n128: location= {Christchurch, New Zealand},\n129: }\n130: \n131: @book{american2010minimum,\n132: title={Minimum Design Loads for Buildings and Other Structures: ASCE Standard 7-10},\n133: author={American Society of Civil Engineers},\n134: isbn={9780784410851},\n135: lccn={2010011011},\n136: url={http://books.google.com.pe/books?id=i1TOe5chZJQC},\n137: year={2010},\n138: publisher={American Society of Civil Engineers}\n139: }\n140: \n141: @book{nsr10,\n142: title={Reglamento Colombiano de Construcción Sismo Resistente NSR-10},\n143: author={Ministerio de Ambiente, Vivienda y de Desarrollo Territorial},\n144: year={2010},\n145: publisher={Imprenta Nacional de Colombia}\n146: }\n147: \n148: @book{wilson1998three,\n149: title={Three dimensional static and dynamic analysis of structures: a physical approach with emphasis on earthquake engineering},\n150: author={Wilson, E.L. and Computers and Structures, Inc},\n151: year={1998},\n152: publisher={Computers and Structures Inc.}\n153: }\n154: \n155: %@book{mf,\n156: %title={Building Code (ACI 218-11)},\n157: %author={ACI Commitee 318},\n158: %isbn={97808},\n159: %year{2011},\n160: %publisher={ACI}\n161: %}\n162: %\n163: \n164: @book{aci2011building,\n165: title={Building Code Requirements for Structural Concrete (ACI 318-11 Metric) and Commentary},\n166: author={{ACI Committee 318} and {American Concrete Institute}},\n167: sortkey={ACICommittee318},\n168: isbn={9780870317453},\n169: year={2011},\n170: publisher={American Concrete Institute}\n171: }\n172: \n173: @report{elwood2009stiffness,\n174: title={Effective Stiffness of Reinforced Concrete Columns},\n175: author={Elwood, K. and Eberhard, M.O.},\n176: journaltitle={ACI Structural Journal},\n177: year={2009},\n178: volume={106-S45},\n179: pages={476-484}\n180: }\n181: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,a4paper]{book}\n2: \n3: \\usepackage{graphicx}\n4: \\usepackage{background}\n5: \n6: \\usepackage{floatrow}\n7: \n8: \\usepackage{url}\n9: \n10: \\usepackage{amsmath,bm}\n11: \n12: \\usepackage[backend=biber,style=numeric,defernumbers,url=true,]{biblatex}\n13: \\usepackage{hyperref}\n14: \\addbibresource{bib.bib}\n15: \n16: \\makeatletter\n17: \\def\\ifskipbib{\\iftoggle{blx@skipbib}}\n18: \\makeatother\n19: \n20: \\def\\initlist{}\n21: \\forcsvlist{\\listadd\\initlist}{A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}\n22: \\forlistloop{\\DeclareBibliographyCategory}{\\initlist}\n23: \\AtDataInput{\\ifskipbib{}{\\addtocategory{\\thefield{sortinit}}{\\thefield{entrykey}}}}\n24: \n25: %To add square brackets in supercites\n26: \\DeclareCiteCommand{\\supercite}[\\mkbibsuperscript]\n27: {\\iffieldundef{prenote}\n28: {}\n29: {\\BibliographyWarning{Ignoring prenote argument}}%\n30: \\iffieldundef{postnote}\n31: {}\n32: {\\BibliographyWarning{Ignoring postnote argument}}%\n33: \\bibopenbracket}%\n34: {\\usebibmacro{citeindex}%\n35: \\usebibmacro{cite}}\n36: {\\supercitedelim}\n37: {\\bibclosebracket}\n38: \n39: \\usepackage{tikz}\n40: \\usepackage{pgfplots}\n41: \n42: %\\newcommand{\\cmd}[1]{\\texttt{\\textbackslash #1}}\n43: \n44: \\DeclareLabelalphaTemplate{\n45: \\labelelement{\n46: \\field{label}\n47: \\field[strwidth=1,strside=left,ifnames=1,compound=false]{labelname}\n48: \\field[strwidth=1,strside=left,compound=false]{labelname}\n49: }\n50: \\labelelement{\n51: \\field[strwidth=1,strside=right]{year}\n52: }\n53: }\n54: \n55: \\begin{document}\n56: \n57: These are my references, \\cite{bael}, \\cite{is}, \\cite{macgregor}, \\cite{morales}, \\cite{nationalacademy-joints}, \\cite{pfeiffer}.\n58: \n59: \\begin{tikzpicture}[domain=0:5,yscale=2]\n60: \\draw[step=5mm,help lines] (0,0) grid ((5.5,1.5);\n61: % \\draw[very thin,color=gray] (0,0) grid (5.5,3.5);\n62: \\draw[->] (0,0) -- (6,0);\n63: \\draw[->] (0,0) -- (0,2);\n64: \\path (3,-.5) node [rectangle] {Período $T$ ($s$)}\n65: (-1,1) node [rectangle,rotate=90] {Coeficiente $C$}\n66: ;\n67: \n68: \\foreach \\x in {0,2,4}\n69: \\draw (\\x cm,2pt) -- (\\x cm,-2pt) node[anchor=north] {$\\x$};\n70: \\foreach \\y in {.5,1,1.5}\n71: \\draw (2pt,\\y cm) -- (-2pt,\\y cm) node[anchor=east] {$\\y$};\n72: \n73: \n74: \\pgfplothandlerlineto\n75: \\pgfplotfunction{\\x}{0,.6}{\\pgfpointxy{\\x}{.3}}\n76: \\pgfplotfunction{\\x}{0.6,.65,...,5.5}{\\pgfpointxy{\\x}{.18/\\x}}\n77: \\pgfusepath{stroke};\n78: \n79: \\pgfplothandlerlineto\n80: \\pgfplotfunction{\\x}{0,.6}{\\pgfpointxy{\\x}{1.35}}\n81: \\pgfplotfunction{\\x}{0.6,.65,...,5.5}{\\pgfpointxy{\\x}{.81/\\x}}\n82: \\pgfusepath{stroke};\n83: \n84: %\\draw[color=blue] plot (\\x,{.81/\\x}) node[right] {$f(x) = \\sin x$};\n85: \n86: \\end{tikzpicture}\n87: \n88: There is a bunch of references which I can't show them in my thesis~\\cite{aci2011building}~\\cite{american2010minimum}~\\cite{elwood2009stiffness} .\n89: \n90: \\printbibheading\n91: \\foreach \\letter in {A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}{%\n92: \\begingroup\\edef\\myprintbib{\\endgroup\\printbibliography[category=\\letter,prefixnumbers=\\letter,heading=none]}\\myprintbib}\n93: \n94: \n95: \\end{document}\n96: \n```\n\nCompile log (tail):\n```\nhas not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 39256 strings out of 467099\n 901132 string characters out of 5408265\n 1804432 words of memory out of 5000000\n 68050 multiletter control sequences out of 15000+600000\n 635678 words of font info for 67 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,12n,118p,700b,1346s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\npdfTeX warning (dest): name{cite.0@aci2011building} has been referenced but doe\ns not exist, replaced by a fixed one\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb><\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>\nOutput written on main.pdf (3 pages, 89869 bytes).\nPDF statistics:\n 78 PDF objects out of 1000 (max. 8388607)\n 60 compressed objects within 1 object stream\n 14 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n author={ACI Committee 318 and American Concrete Institute},\n isbn={9780870317453},\n year={2011},\n=======\n author={{ACI Committee 318} and {American Concrete Institute}},\n sortkey={ACICommittee318},\n isbn={9780870317453},\n year={2011},\n>>>>>>> REPLACE\n", "id": "texse_multi_169006", "doc": "texse_multi/169006", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/169006", "fix_answer": "accepted", "answer_id": 169010, "answer_score": 3, "fix_source": "snippet", "companions": ["bib.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package biblatex Error: Category 'X' not declared.", "changed_files": ["bib.bib"], "question_id": 169006, "accepted_answer_id": 169010, "title": "Package biblatex error: Category 3 not declared ( \\endentry)", "tags": ["biblatex"], "score": 3, "created": "2014-04-01", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 53: Package biblatex Error: Category '3' not declared.\n\nProject files:\n- bib.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,a4paper]{book}\n2: \n3: \\usepackage{graphicx}\n4: \\usepackage{background}\n5: \n6: \\usepackage{floatrow}\n7: \n8: \\usepackage{url}\n9: \n10: \\usepackage{amsmath,bm}\n11: \n12: \\usepackage[backend=biber,style=numeric,defernumbers,url=true,]{biblatex}\n13: \\usepackage{hyperref}\n14: \\addbibresource{bib.bib}\n15: \n16: \\makeatletter\n17: \\def\\ifskipbib{\\iftoggle{blx@skipbib}}\n18: \\makeatother\n19: \n20: \\def\\initlist{}\n21: \\forcsvlist{\\listadd\\initlist}{A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}\n22: \\forlistloop{\\DeclareBibliographyCategory}{\\initlist}\n23: \\AtDataInput{\\ifskipbib{}{\\addtocategory{\\thefield{sortinit}}{\\thefield{entrykey}}}}\n24: \n25: %To add square brackets in supercites\n26: \\DeclareCiteCommand{\\supercite}[\\mkbibsuperscript]\n27: {\\iffieldundef{prenote}\n28: {}\n29: {\\BibliographyWarning{Ignoring prenote argument}}%\n30: \\iffieldundef{postnote}\n31: {}\n32: {\\BibliographyWarning{Ignoring postnote argument}}%\n33: \\bibopenbracket}%\n34: {\\usebibmacro{citeindex}%\n35: \\usebibmacro{cite}}\n36: {\\supercitedelim}\n37: {\\bibclosebracket}\n38: \n39: \\usepackage{tikz}\n40: \\usepackage{pgfplots}\n41: \n42: %\\newcommand{\\cmd}[1]{\\texttt{\\textbackslash #1}}\n43: \n44: \\DeclareLabelalphaTemplate{\n45: \\labelelement{\n46: \\field{label}\n47: \\field[strwidth=1,strside=left,ifnames=1,compound=false]{labelname}\n48: \\field[strwidth=1,strside=left,compound=false]{labelname}\n49: }\n50: \\labelelement{\n51: \\field[strwidth=1,strside=right]{year}\n52: }\n53: }\n54: \n55: \\begin{document}\n56: \n57: These are my references, \\cite{bael}, \\cite{is}, \\cite{macgregor}, \\cite{morales}, \\cite{nationalacademy-joints}, \\cite{pfeiffer}.\n58: \n59: \\begin{tikzpicture}[domain=0:5,yscale=2]\n60: \\draw[step=5mm,help lines] (0,0) grid ((5.5,1.5);\n61: % \\draw[very thin,color=gray] (0,0) grid (5.5,3.5);\n62: \\draw[->] (0,0) -- (6,0);\n63: \\draw[->] (0,0) -- (0,2);\n64: \\path (3,-.5) node [rectangle] {Período $T$ ($s$)}\n65: (-1,1) node [rectangle,rotate=90] {Coeficiente $C$}\n66: ;\n67: \n68: \\foreach \\x in {0,2,4}\n69: \\draw (\\x cm,2pt) -- (\\x cm,-2pt) node[anchor=north] {$\\x$};\n70: \\foreach \\y in {.5,1,1.5}\n71: \\draw (2pt,\\y cm) -- (-2pt,\\y cm) node[anchor=east] {$\\y$};\n72: \n73: \n74: \\pgfplothandlerlineto\n75: \\pgfplotfunction{\\x}{0,.6}{\\pgfpointxy{\\x}{.3}}\n76: \\pgfplotfunction{\\x}{0.6,.65,...,5.5}{\\pgfpointxy{\\x}{.18/\\x}}\n77: \\pgfusepath{stroke};\n78: \n79: \\pgfplothandlerlineto\n80: \\pgfplotfunction{\\x}{0,.6}{\\pgfpointxy{\\x}{1.35}}\n81: \\pgfplotfunction{\\x}{0.6,.65,...,5.5}{\\pgfpointxy{\\x}{.81/\\x}}\n82: \\pgfusepath{stroke};\n83: \n84: %\\draw[color=blue] plot (\\x,{.81/\\x}) node[right] {$f(x) = \\sin x$};\n85: \n86: \\end{tikzpicture}\n87: \n88: There is a bunch of references which I can't show them in my thesis~\\cite{aci2011building}~\\cite{american2010minimum}~\\cite{elwood2009stiffness} .\n89: \n90: \\printbibheading\n91: \\foreach \\letter in {A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z}{%\n92: \\begingroup\\edef\\myprintbib{\\endgroup\\printbibliography[category=\\letter,prefixnumbers=\\letter,heading=none]}\\myprintbib}\n93: \n94: \n95: \\end{document}\n96: \n```\n\nCompile log (tail):\n```\nhas not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 39256 strings out of 467099\n 901132 string characters out of 5408265\n 1804432 words of memory out of 5000000\n 68050 multiletter control sequences out of 15000+600000\n 635678 words of font info for 67 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 107i,12n,118p,700b,1346s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\npdfTeX warning (dest): name{cite.0@aci2011building} has been referenced but doe\ns not exist, replaced by a fixed one\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb><\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>\nOutput written on main.pdf (3 pages, 89869 bytes).\nPDF statistics:\n 78 PDF objects out of 1000 (max. 8388607)\n 60 compressed objects within 1 object stream\n 14 named destinations out of 1000 (max. 500000)\n 13 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/169006", "answer_url": "https://tex.stackexchange.com/a/169010", "question_author": {"user_id": 29764, "name": "Isai", "url": "https://tex.stackexchange.com/users/29764"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[utf8]{inputenc}\n\\usepackage[backend = biber]{biblatex}\n\\addbibresource{SUSYBib.bib}\n\\begin{document}\n\\cite{ab}\n\\cite{bc}", "replace": "...\n\\usepackage{biblatex}\n\\addbibresource{SUSYBib.bib}\n...\n\\begin{document}\n...\\cite{1}...\n...\\cite{2}...", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 2, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}, {"line": 5, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": "segment=0 on input line 6.\n\nLaTeX Warning: Citation '1' on page 1 undefined on input line 7.\n\n\nLaTeX Warning: Citation '2' on page 1 undefined on input line 8.\n\n\nLaTeX Warning: Empty bibliography on input line 10.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8726 strings out of 467099\n 171115 string characters out of 5408265\n 1006576 words of memory out of 5000000\n 38050 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1164s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 17662 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: LaTeX Error: Missing \\begin{document}.\n- line 5: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- SUSYBib.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`SUSYBib.bib` (full file, line-numbered):\n```\n1: @book{1,\n2: title={The Schrödinger Equation},\n3: author={F. A. Berezin, M. A. Shubin},\n4: year={1983},\n5: publisher={Moscow State University, Moscow},\n6: pages={57-59}\n7: }\n8: @book{2,\n9: title={An Introduction to Measure Theory},\n10: author={Terence Tao},\n11: year={2011},\n12: publisher={American Mathematical Society},\n13: pages={91}\n14: }\n15: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: ...\n3: \\usepackage{biblatex}\n4: \\addbibresource{SUSYBib.bib}\n5: ...\n6: \\begin{document}\n7: ...\\cite{1}...\n8: ...\\cite{2}...\n9: \\nocite{*}\n10: \\printbibliography\n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nsegment=0 on input line 6.\n\nLaTeX Warning: Citation '1' on page 1 undefined on input line 7.\n\n\nLaTeX Warning: Citation '2' on page 1 undefined on input line 8.\n\n\nLaTeX Warning: Empty bibliography on input line 10.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8726 strings out of 467099\n 171115 string characters out of 5408265\n 1006576 words of memory out of 5000000\n 38050 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1164s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 17662 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n...\n\\usepackage{biblatex}\n\\addbibresource{SUSYBib.bib}\n...\n\\begin{document}\n...\\cite{1}...\n...\\cite{2}...\n=======\n\\usepackage[utf8]{inputenc}\n\\usepackage[backend = biber]{biblatex}\n\\addbibresource{SUSYBib.bib}\n\\begin{document}\n\\cite{ab}\n\\cite{bc}\n>>>>>>> REPLACE\n", "id": "texse_multi_351775", "doc": "texse_multi/351775", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/351775", "fix_answer": "accepted", "answer_id": 351793, "answer_score": 1, "fix_source": "answer_doc", "companions": ["SUSYBib.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Missing \\CS{X}.", "changed_files": ["main.tex"], "question_id": 351775, "accepted_answer_id": 351793, "title": "How to successfully put a bibliography in a report on TexShop?", "tags": ["biblatex"], "score": 1, "created": "2017-02-02", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 2: LaTeX Error: Missing \\begin{document}.\n- line 5: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- SUSYBib.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{report}\n2: ...\n3: \\usepackage{biblatex}\n4: \\addbibresource{SUSYBib.bib}\n5: ...\n6: \\begin{document}\n7: ...\\cite{1}...\n8: ...\\cite{2}...\n9: \\nocite{*}\n10: \\printbibliography\n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nsegment=0 on input line 6.\n\nLaTeX Warning: Citation '1' on page 1 undefined on input line 7.\n\n\nLaTeX Warning: Citation '2' on page 1 undefined on input line 8.\n\n\nLaTeX Warning: Empty bibliography on input line 10.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8726 strings out of 467099\n 171115 string characters out of 5408265\n 1006576 words of memory out of 5000000\n 38050 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1164s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 17662 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/351775", "answer_url": "https://tex.stackexchange.com/a/351793", "question_author": {"user_id": 124438, "name": "CS1994", "url": "https://tex.stackexchange.com/users/124438"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 88710, "name": "Wiebke", "url": "https://tex.stackexchange.com/users/88710"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\csname @@input\\endcsname foo.tex", "replace": "\\input{foo.tex}", "type": "real"}], "reported_file": "foo.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 1, "text": "Misplaced \\omit.", "file": "foo.tex", "fileLabel": "foo.tex"}, {"line": 7, "text": "Misplaced \\noalign.", "file": "main.tex", "fileLabel": null}], "log_tail": "o see a number,\nlook up `weird error' in the index to The TeXbook.)\n\n! Illegal unit of measure (pt inserted).\n \n \\futurelet \nl.7 \\hline\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 447 strings out of 467099\n 8327 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29859 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,6n,38p,145b,165s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 22467 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `foo.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- foo.tex line 1: Misplaced \\omit.\n- line 7: Misplaced \\noalign.\n\nProject files:\n- foo.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\begin{document}\n4: \\begin{tabular}{|l|l|}\n5: \\hline\n6: \\csname @@input\\endcsname foo.tex\n7: \\hline\n8: 1 & a \\\\\n9: \\hline\n10: 2 & b \\\\\n11: \\hline\n12: \\end{tabular}\n13: \\end{document}\n14: \n```\n\nCurrent content of `foo.tex` (full file, line-numbered):\n```\n1: \\multicolumn{2}{c}{\\emph{By XXX}}\\\\\n2: \n```\n\nCompile log (tail):\n```\no see a number,\nlook up `weird error' in the index to The TeXbook.)\n\n! Illegal unit of measure (pt inserted).\n \n \\futurelet \nl.7 \\hline\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 447 strings out of 467099\n 8327 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29859 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,6n,38p,145b,165s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 22467 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\input{foo.tex}\n=======\n\\csname @@input\\endcsname foo.tex\n>>>>>>> REPLACE\n", "id": "texse_multi_317674", "doc": "texse_multi/317674", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/317674", "fix_answer": "top", "answer_id": 317731, "answer_score": 2, "fix_source": "answer_doc", "companions": ["foo.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "Misplaced \\CS.", "changed_files": ["main.tex"], "question_id": 317674, "accepted_answer_id": null, "title": "Input file starting with a multicolumn", "tags": ["tables", "input"], "score": 3, "created": "2016-07-02", "error_message": "Misplaced \\omit. [\\multicolumn{3}{l}{\\emph{By XXX}}]\"", "prompt_v1": "The LaTeX file `foo.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- foo.tex line 1: Misplaced \\omit.\n- line 7: Misplaced \\noalign.\n\nProject files:\n- foo.tex\n- main.tex\n\nCurrent content of `foo.tex` (full file, line-numbered):\n```\n1: \\multicolumn{2}{c}{\\emph{By XXX}}\\\\\n2: \n```\n\nCompile log (tail):\n```\no see a number,\nlook up `weird error' in the index to The TeXbook.)\n\n! Illegal unit of measure (pt inserted).\n \n \\futurelet \nl.7 \\hline\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 447 strings out of 467099\n 8327 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29859 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,6n,38p,145b,165s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 22467 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/317674", "answer_url": "https://tex.stackexchange.com/a/317731", "question_author": {"user_id": 60735, "name": "NHH", "url": "https://tex.stackexchange.com/users/60735"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 16967, "name": "Heiko Oberdiek", "url": "https://tex.stackexchange.com/users/16967"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\usepackage{chicago}\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 4, "text": "Undefined control sequence.", "file": null, "fileLabel": "main.bbl"}], "log_tail": ", Greenstone, and Li}{Ch...\nl.4 et~al.}{2013}]{chen2013evidence}\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n) [2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 454 strings out of 467099\n 8436 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29863 multiletter control sequences out of 15000+600000\n 629279 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,38p,145b,142s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 39401 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 15 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 4: Undefined control sequence.\n\nProject files:\n- main.tex\n- references.bib\n\nOther project files (edit them with ):\n\n`references.bib` (full file, line-numbered):\n```\n1: @Article{chen2013evidence,\n2: author = {Chen, Yuyu and Ebenstein, Avraham and Greenstone, Michael and Li, Hongbin},\n3: title = {Evidence on the impact of sustained exposure to air pollution on life expectancy from Chinaâs Huai River policy},\n4: journal = {Proceedings of the National Academy of Sciences},\n5: year = {2013},\n6: volume = {110},\n7: number = {32},\n8: pages = {12936--12941},\n9: publisher = {National Acad Sciences},\n10: }\n11: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper]{article}\n2: \n3: \\begin{document}\n4: \n5: \\cite{chen2013evidence} found\n6: \n7: \\newpage\n8: \\bibliography{references}\n9: \\bibliographystyle{chicago}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\n, Greenstone, and Li}{Ch...\nl.4 et~al.}{2013}]{chen2013evidence}\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n) [2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 454 strings out of 467099\n 8436 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29863 multiletter control sequences out of 15000+600000\n 629279 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,38p,145b,142s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 39401 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 15 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\usepackage{chicago}\n\\begin{document}\n>>>>>>> REPLACE\n", "id": "texse_multi_342967", "doc": "texse_multi/342967", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/342967", "fix_answer": "top", "answer_id": 342980, "answer_score": 2, "fix_source": "answer_doc", "companions": ["references.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 342967, "accepted_answer_id": null, "title": "Problem with compiling citation and bibliography on LaTeX for Mac (TeXSHOP)", "tags": ["citing"], "score": 2, "created": "2016-12-08", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 4: Undefined control sequence.\n\nProject files:\n- main.tex\n- references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper]{article}\n2: \n3: \\begin{document}\n4: \n5: \\cite{chen2013evidence} found\n6: \n7: \\newpage\n8: \\bibliography{references}\n9: \\bibliographystyle{chicago}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\n, Greenstone, and Li}{Ch...\nl.4 et~al.}{2013}]{chen2013evidence}\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n) [2] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 454 strings out of 467099\n 8436 string characters out of 5408265\n 436796 words of memory out of 5000000\n 29863 multiletter control sequences out of 15000+600000\n 629279 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 35i,5n,38p,145b,142s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (2 pages, 39401 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 15 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/342967", "answer_url": "https://tex.stackexchange.com/a/342980", "question_author": {"user_id": 120603, "name": "Todd", "url": "https://tex.stackexchange.com/users/120603"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 120477, "name": "Jan", "url": "https://tex.stackexchange.com/users/120477"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage{fontspec}\n\\usepackage[ngerman]{babel}", "replace": "\\usepackage[T1]{fontenc}\n\\usepackage[utf8]{inputenc}\n\\usepackage{lmodern}\n\\usepackage{ngerman}", "type": "real"}, {"file": "main.tex", "search": "\\input{t}", "replace": "\\include{t}", "type": "real"}], "reported_file": "t.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 12, "text": "Undefined control sequence.", "file": "t.tex", "fileLabel": "t.tex"}, {"line": 12, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 19, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 26, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 37, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 49, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "nvasLeft 0.0 def /yCanvasLeft 0.0 def /xCanvasRight 302.66...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\n] (./main.aux (./t.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 9156 strings out of 467099\n 170429 string characters out of 5408265\n 571735 words of memory out of 5000000\n 38376 multiletter control sequences out of 15000+600000\n 637777 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 79i,5n,76p,408b,254s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 38715 bytes).\nPDF statistics:\n 22 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `t.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- t.tex line 12: Undefined control sequence.\n- line 12: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 26: Undefined control sequence.\n- line 37: Undefined control sequence.\n- line 49: Undefined control sequence.\n\nProject files:\n- main.tex\n- t.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,11pt]{article}\n2: \\usepackage{fontspec}\n3: \\usepackage[ngerman]{babel}\n4: \\usepackage{pstricks}\n5: \\begin{document}\n6: \\section{asdf}\n7: \\input{t}\n8: \\end{document}\n9: \n```\n\nCurrent content of `t.tex` (full file, line-numbered):\n```\n1: \\psset{xunit=.5pt,yunit=.5pt,runit=.5pt}\n2: \\begin{pspicture}(605.33331299,340){\n3: \\newrgbcolor{curcolor}{1 1 1}\n4: \\pscustom[linestyle=none,fillstyle=solid,fillcolor=curcolor]{\n5: \\newpath\n6: \\moveto(302.61332577,0.0380208)\n7: \\lineto(0,0.0380208)\n8: \\lineto(0,339.9599915)\n9: \\lineto(605.1893182,339.9599915)\n10: \\lineto(605.1893182,0.0380208)\n11: \\lineto(302.61332577,0.0380208)\n12: }}%ERROR LINE - ERROR LINE - ERROR LINE - ERROR LINE - ERROR LINE\n13: {\n14: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n15: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n16: \\newpath\n17: \\moveto(93.47018108,67.31197656)\n18: \\lineto(93.47018108,72.97811231)\n19: }}\n20: {\n21: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n22: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n23: \\newpath\n24: \\moveto(93.47018108,67.31197656)\n25: \\lineto(93.47018108,72.97811231)\n26: }}\n27: {\n28: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n29: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n30: \\newpath\n31: \\moveto(95.74005815,287.79562041)\n32: \\lineto(94.03738349,288.32458055)\n33: \\lineto(93.99989022,288.28594115)\n34: \\lineto(93.96186324,288.24863413)\n35: \\lineto(93.96186324,288.20999473)\n36: \\closepath\n37: }}\n38: {\n39: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n40: \\pscustom[linestyle=none,fillstyle=solid,fillcolor=curcolor]{\n41: \\newpath\n42: \\moveto(96.42026426,97.00213091)\n43: \\lineto(96.42026426,97.11506424)\n44: \\lineto(96.38226426,97.15306424)\n45: \\lineto(96.38226426,97.3041309)\n46: \\lineto(96.34479759,97.3417309)\n47: \\lineto(96.34479759,97.3797309)\n48: \\lineto(96.30679759,97.41719756)\n49: }}\n50: \\end{pspicture}\n51: \n```\n\nCompile log (tail):\n```\nnvasLeft 0.0 def /yCanvasLeft 0.0 def /xCanvasRight 302.66...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\n] (./main.aux (./t.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 9156 strings out of 467099\n 170429 string characters out of 5408265\n 571735 words of memory out of 5000000\n 38376 multiletter control sequences out of 15000+600000\n 637777 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 79i,5n,76p,408b,254s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 38715 bytes).\nPDF statistics:\n 22 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\include{t}\n=======\n\\input{t}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[T1]{fontenc}\n\\usepackage[utf8]{inputenc}\n\\usepackage{lmodern}\n\\usepackage{ngerman}\n=======\n\\usepackage{fontspec}\n\\usepackage[ngerman]{babel}\n>>>>>>> REPLACE\n", "id": "texse_multi_413817", "doc": "texse_multi/413817", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/413817", "fix_answer": "accepted", "answer_id": 413821, "answer_score": 2, "fix_source": "answer_doc", "companions": ["t.tex"], "n_files": 2, "engine": "xelatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 413817, "accepted_answer_id": 413821, "title": "Undefined control sequence in pspicture", "tags": ["pstricks", "include"], "score": 1, "created": "2018-02-05", "error_message": "", "prompt_v1": "The LaTeX file `t.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- t.tex line 12: Undefined control sequence.\n- line 12: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 26: Undefined control sequence.\n- line 37: Undefined control sequence.\n- line 49: Undefined control sequence.\n\nProject files:\n- main.tex\n- t.tex\n\nCurrent content of `t.tex` (full file, line-numbered):\n```\n1: \\psset{xunit=.5pt,yunit=.5pt,runit=.5pt}\n2: \\begin{pspicture}(605.33331299,340){\n3: \\newrgbcolor{curcolor}{1 1 1}\n4: \\pscustom[linestyle=none,fillstyle=solid,fillcolor=curcolor]{\n5: \\newpath\n6: \\moveto(302.61332577,0.0380208)\n7: \\lineto(0,0.0380208)\n8: \\lineto(0,339.9599915)\n9: \\lineto(605.1893182,339.9599915)\n10: \\lineto(605.1893182,0.0380208)\n11: \\lineto(302.61332577,0.0380208)\n12: }}%ERROR LINE - ERROR LINE - ERROR LINE - ERROR LINE - ERROR LINE\n13: {\n14: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n15: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n16: \\newpath\n17: \\moveto(93.47018108,67.31197656)\n18: \\lineto(93.47018108,72.97811231)\n19: }}\n20: {\n21: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n22: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n23: \\newpath\n24: \\moveto(93.47018108,67.31197656)\n25: \\lineto(93.47018108,72.97811231)\n26: }}\n27: {\n28: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n29: \\pscustom[linewidth=0.99999949,linecolor=curcolor]{\n30: \\newpath\n31: \\moveto(95.74005815,287.79562041)\n32: \\lineto(94.03738349,288.32458055)\n33: \\lineto(93.99989022,288.28594115)\n34: \\lineto(93.96186324,288.24863413)\n35: \\lineto(93.96186324,288.20999473)\n36: \\closepath\n37: }}\n38: {\n39: \\newrgbcolor{curcolor}{0.00392157 0.00392157 0.00392157}\n40: \\pscustom[linestyle=none,fillstyle=solid,fillcolor=curcolor]{\n41: \\newpath\n42: \\moveto(96.42026426,97.00213091)\n43: \\lineto(96.42026426,97.11506424)\n44: \\lineto(96.38226426,97.15306424)\n45: \\lineto(96.38226426,97.3041309)\n46: \\lineto(96.34479759,97.3417309)\n47: \\lineto(96.34479759,97.3797309)\n48: \\lineto(96.30679759,97.41719756)\n49: }}\n50: \\end{pspicture}\n51: \n```\n\nCompile log (tail):\n```\nnvasLeft 0.0 def /yCanvasLeft 0.0 def /xCanvasRight 302.66...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.5 SLW _Not_Configured_For_This_For...\nNon-PDF special ignored!\n \" tx@Dict begin STP newpath 0.8 SLW _Not_Configured_For_This_For...\n] (./main.aux (./t.aux))\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 9156 strings out of 467099\n 170429 string characters out of 5408265\n 571735 words of memory out of 5000000\n 38376 multiletter control sequences out of 15000+600000\n 637777 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 79i,5n,76p,408b,254s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (2 pages, 38715 bytes).\nPDF statistics:\n 22 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/413817", "answer_url": "https://tex.stackexchange.com/a/413821", "question_author": {"user_id": 95202, "name": "muggi", "url": "https://tex.stackexchange.com/users/95202"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": null, "name": "user2478", "url": null}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\geometry{letterpaper,bindingoffset=0.2in,\n left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n footskip=.25in}", "replace": "\\usepackage[letterpaper,bindingoffset=0.2in,\n left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n footskip=.25in]{geometry}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 13, "text": "LaTeX Error: Option clash for package geometry.", "file": "main.tex", "fileLabel": null}], "log_tail": "(T,H,B)=(95.39737pt, 556.47656pt, 143.09605pt)\n* \\paperwidth=614.295pt\n* \\paperheight=794.96999pt\n* \\textwidth=310.76125pt\n* \\textheight=556.47656pt\n* \\oddsidemargin=86.72377pt\n* \\evensidemargin=72.27pt\n* \\topmargin=-13.87262pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=11.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=59.0pt\n* \\marginparsep=10.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=10.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1041 strings out of 467099\n 17498 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30439 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 61i,5n,68p,199b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11418 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: LaTeX Error: Option clash for package geometry.\n\nProject files:\n- main.tex\n- pre.tex\n\nOther project files (edit them with ):\n\n`pre.tex` (full file, line-numbered):\n```\n1: \\usepackage[letterpaper,bindingoffset=0.2in,left=2in,right=2in]{geometry}\n2: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,titlepage]{article}%\n2: \\makeatletter\n3: \\@namedef{geometry.sty}{}% a fake for a \"loaded\" package\n4: \\makeatother\n5: \n6: \\input{pre} %this has in it \\usepackage{geometry} with some options\n7: \n8: % I want to override common file and load geometry\n9: % with different options here\n10: \\usepackage[letterpaper,bindingoffset=0.2in,\n11: left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n12: footskip=.25in]{geometry}\n13: \n14: \\begin{document}\n15: test\n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\n(T,H,B)=(95.39737pt, 556.47656pt, 143.09605pt)\n* \\paperwidth=614.295pt\n* \\paperheight=794.96999pt\n* \\textwidth=310.76125pt\n* \\textheight=556.47656pt\n* \\oddsidemargin=86.72377pt\n* \\evensidemargin=72.27pt\n* \\topmargin=-13.87262pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=11.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=59.0pt\n* \\marginparsep=10.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=10.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1041 strings out of 467099\n 17498 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30439 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 61i,5n,68p,199b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11418 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\usepackage[letterpaper,bindingoffset=0.2in,\n left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n footskip=.25in]{geometry}\n=======\n\\geometry{letterpaper,bindingoffset=0.2in,\n left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n footskip=.25in}\n>>>>>>> REPLACE\n", "id": "texse_multi_451047", "doc": "texse_multi/451047", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/451047", "fix_answer": "accepted", "answer_id": 451238, "answer_score": 5, "fix_source": "snippet", "companions": ["pre.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Option clash for package geometry.", "changed_files": ["main.tex"], "question_id": 451047, "accepted_answer_id": 451238, "title": "Changing geometry after loading the geometry package", "tags": ["geometry", "package-options"], "score": 5, "created": "2018-09-15", "error_message": "LaTeX Error: Option clash for package geometry.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 13: LaTeX Error: Option clash for package geometry.\n\nProject files:\n- main.tex\n- pre.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,titlepage]{article}%\n2: \\makeatletter\n3: \\@namedef{geometry.sty}{}% a fake for a \"loaded\" package\n4: \\makeatother\n5: \n6: \\input{pre} %this has in it \\usepackage{geometry} with some options\n7: \n8: % I want to override common file and load geometry\n9: % with different options here\n10: \\usepackage[letterpaper,bindingoffset=0.2in,\n11: left=1.2in,right=1.2in,top=.8in,bottom=.8in,\n12: footskip=.25in]{geometry}\n13: \n14: \\begin{document}\n15: test\n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\n(T,H,B)=(95.39737pt, 556.47656pt, 143.09605pt)\n* \\paperwidth=614.295pt\n* \\paperheight=794.96999pt\n* \\textwidth=310.76125pt\n* \\textheight=556.47656pt\n* \\oddsidemargin=86.72377pt\n* \\evensidemargin=72.27pt\n* \\topmargin=-13.87262pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=11.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=59.0pt\n* \\marginparsep=10.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=10.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1041 strings out of 467099\n 17498 string characters out of 5408265\n 435796 words of memory out of 5000000\n 30439 multiletter control sequences out of 15000+600000\n 628021 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 61i,5n,68p,199b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11418 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/451047", "answer_url": "https://tex.stackexchange.com/a/451238", "question_author": {"user_id": 14594, "name": "Nasser", "url": "https://tex.stackexchange.com/users/14594"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 134574, "name": "Phelype Oleinik", "url": "https://tex.stackexchange.com/users/134574"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "{\\input{tablefile.tex}}", "replace": "\\begin{table}\n\\let\\center\\empty\n\\let\\endcenter\\relax\n\\centering\n\\resizebox{.5\\width}{!}{\\input{tablefile.tex}}\n\\end{table}", "type": "real"}], "reported_file": "tablefile.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 3, "text": "You can't use `\\hrule' here except with leaders.", "file": "tablefile.tex", "fileLabel": "tablefile.tex"}, {"line": 3, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}, {"line": 16, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 19, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 23, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 29, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 22, "text": "Package graphics Error: Division by 0.", "file": "main.tex", "fileLabel": null}], "log_tail": "***\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 23940 strings out of 467099\n 467312 string characters out of 5408265\n 946721 words of memory out of 5000000\n 52788 multiletter control sequences out of 15000+600000\n 637762 words of font info for 76 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 128i,15n,123p,401b,587s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmss8.pfb>\nOutput written on main.pdf (2 pages, 54400 bytes).\nPDF statistics:\n 97 PDF objects out of 1000 (max. 8388607)\n 74 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `tablefile.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- tablefile.tex line 3: You can't use `\\hrule' here except with leaders.\n- line 3: Missing number, treated as zero.\n- line 16: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 23: Undefined control sequence.\n- line 29: Undefined control sequence.\n- line 22: Package graphics Error: Division by 0.\n\nProject files:\n- main.tex\n- tablefile.tex\n\nOther project files (edit them with ):\n\n`main.tex` (full file, line-numbered):\n```\n1: \\documentclass{beamer}\n2: \\mode {\n3: \\usetheme{Madrid}\n4: }\n5: \\usepackage{graphicx}\n6: \\usepackage{booktabs}\n7: \\usepackage{graphics}\n8: \\usepackage{subcaption}\n9: \\usepackage{mwe}\n10: \n11: \\newlength{\\tempwidth}\n12: \n13: \\begin{document}\n14: \n15: \\begin{frame}\n16: {\\input{tablefile.tex}}\n17: \\end{frame}\n18: \n19: \\end{document}\n20: \n```\n\nCurrent content of `tablefile.tex` (full file, line-numbered):\n```\n1: \\begin{table}[htbp]\\centering\n2: \\def\\sym#1{\\ifmmode^{#1}\\else\\(^{#1}\\)\\fi}\n3: \\caption{Linear Model, h=10}\n4: \\begin{tabular}{l*{5}{c}}\n5: \\hline\\hline\n6: &\\multicolumn{1}{c}{(1)}&\\multicolumn{1}{c}{(2)}&\\multicolumn{1}{c}{(3)}&\\multicolumn{1}{c}{(4)}&\\multicolumn{1}{c}{(5)}\\\\\n7: &\\multicolumn{1}{c}{Corrupt Items}&\\multicolumn{1}{c}{Corrupt Resources}&\\multicolumn{1}{c}{Diversion Items}&\\multicolumn{1}{c}{Fraud Items}&\\multicolumn{1}{c}{Overinvoiced Items}\\\\\n8: \\hline\n9: model & & & & & \\\\\n10: T & -0.0226 & -0.0194 & -0.0389 & 0.0000768 & -0.0226 \\\\\n11: & (-0.99) & (-0.45) & (-1.31) & (0.00) & (-0.99) \\\\\n12: [1em]\n13: R & 0.00247 & 0.00510 & 0.00379 & -0.00140 & 0.00247 \\\\\n14: & (0.78) & (0.86) & (0.94) & (-0.54) & (0.78) \\\\\n15: [1em]\n16: R*T & -0.00539 & -0.0161\\sym{*} & -0.00301 & -0.00108 & -0.00539 \\\\\n17: & (-1.35) & (-2.13) & (-0.58) & (-0.32) & (-1.35) \\\\\n18: [1em]\n19: Constant & 0.0766\\sym{***}& 0.105\\sym{**} & 0.0381 & 0.0163 & 0.0766\\sym{***}\\\\\n20: & (4.45) & (3.26) & (1.71) & (1.14) & (4.45) \\\\\n21: \\hline\n22: sigma & & & & & \\\\\n23: Constant & 0.0441\\sym{***}& 0.0827\\sym{***}& 0.0531\\sym{***}& 0.0352\\sym{***}& 0.0441\\sym{***}\\\\\n24: & (9.41) & (9.17) & (6.97) & (6.93) & (9.41) \\\\\n25: \\hline\n26: Observations & 54 & 54 & 54 & 54 & 54 \\\\\n27: \\hline\\hline\n28: \\multicolumn{6}{l}{\\footnotesize All are tobit regressions, censored at 0}\\\\\n29: \\multicolumn{6}{l}{\\footnotesize \\sym{*} \\(p<0.05\\), \\sym{**} \\(p<0.01\\), \\sym{***} \\(p<0.001\\)}\\\\\n30: \\end{tabular}\n31: \\end{table}\n32: \n```\n\nCompile log (tail):\n```\n***\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 23940 strings out of 467099\n 467312 string characters out of 5408265\n 946721 words of memory out of 5000000\n 52788 multiletter control sequences out of 15000+600000\n 637762 words of font info for 76 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 128i,15n,123p,401b,587s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmss8.pfb>\nOutput written on main.pdf (2 pages, 54400 bytes).\nPDF statistics:\n 97 PDF objects out of 1000 (max. 8388607)\n 74 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\begin{table}\n\\let\\center\\empty\n\\let\\endcenter\\relax\n\\centering\n\\resizebox{.5\\width}{!}{\\input{tablefile.tex}}\n\\end{table}\n=======\n{\\input{tablefile.tex}}\n>>>>>>> REPLACE\n", "id": "texse_multi_365313", "doc": "texse_multi/365313", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/365313", "fix_answer": "accepted", "answer_id": 365361, "answer_score": 2, "fix_source": "answer_doc", "companions": ["tablefile.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "You can'X' here except with leaders.", "changed_files": ["main.tex"], "question_id": 365313, "accepted_answer_id": 365361, "title": "Resizing table from external latex file", "tags": ["tables", "errors", "resize"], "score": 1, "created": "2017-04-18", "error_message": "", "prompt_v1": "The LaTeX file `tablefile.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- tablefile.tex line 3: You can't use `\\hrule' here except with leaders.\n- line 3: Missing number, treated as zero.\n- line 16: Undefined control sequence.\n- line 19: Undefined control sequence.\n- line 23: Undefined control sequence.\n- line 29: Undefined control sequence.\n- line 22: Package graphics Error: Division by 0.\n\nProject files:\n- main.tex\n- tablefile.tex\n\nCurrent content of `tablefile.tex` (full file, line-numbered):\n```\n1: \\begin{table}[htbp]\\centering\n2: \\def\\sym#1{\\ifmmode^{#1}\\else\\(^{#1}\\)\\fi}\n3: \\caption{Linear Model, h=10}\n4: \\begin{tabular}{l*{5}{c}}\n5: \\hline\\hline\n6: &\\multicolumn{1}{c}{(1)}&\\multicolumn{1}{c}{(2)}&\\multicolumn{1}{c}{(3)}&\\multicolumn{1}{c}{(4)}&\\multicolumn{1}{c}{(5)}\\\\\n7: &\\multicolumn{1}{c}{Corrupt Items}&\\multicolumn{1}{c}{Corrupt Resources}&\\multicolumn{1}{c}{Diversion Items}&\\multicolumn{1}{c}{Fraud Items}&\\multicolumn{1}{c}{Overinvoiced Items}\\\\\n8: \\hline\n9: model & & & & & \\\\\n10: T & -0.0226 & -0.0194 & -0.0389 & 0.0000768 & -0.0226 \\\\\n11: & (-0.99) & (-0.45) & (-1.31) & (0.00) & (-0.99) \\\\\n12: [1em]\n13: R & 0.00247 & 0.00510 & 0.00379 & -0.00140 & 0.00247 \\\\\n14: & (0.78) & (0.86) & (0.94) & (-0.54) & (0.78) \\\\\n15: [1em]\n16: R*T & -0.00539 & -0.0161\\sym{*} & -0.00301 & -0.00108 & -0.00539 \\\\\n17: & (-1.35) & (-2.13) & (-0.58) & (-0.32) & (-1.35) \\\\\n18: [1em]\n19: Constant & 0.0766\\sym{***}& 0.105\\sym{**} & 0.0381 & 0.0163 & 0.0766\\sym{***}\\\\\n20: & (4.45) & (3.26) & (1.71) & (1.14) & (4.45) \\\\\n21: \\hline\n22: sigma & & & & & \\\\\n23: Constant & 0.0441\\sym{***}& 0.0827\\sym{***}& 0.0531\\sym{***}& 0.0352\\sym{***}& 0.0441\\sym{***}\\\\\n24: & (9.41) & (9.17) & (6.97) & (6.93) & (9.41) \\\\\n25: \\hline\n26: Observations & 54 & 54 & 54 & 54 & 54 \\\\\n27: \\hline\\hline\n28: \\multicolumn{6}{l}{\\footnotesize All are tobit regressions, censored at 0}\\\\\n29: \\multicolumn{6}{l}{\\footnotesize \\sym{*} \\(p<0.05\\), \\sym{**} \\(p<0.01\\), \\sym{***} \\(p<0.001\\)}\\\\\n30: \\end{tabular}\n31: \\end{table}\n32: \n```\n\nCompile log (tail):\n```\n***\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nPackage rerunfilecheck Warning: File `main.out' has changed.\n(rerunfilecheck) Rerun to get outlines right\n(rerunfilecheck) or use package `bookmark'.\n\nPackage rerunfilecheck Info: Checksums for `main.out':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 23940 strings out of 467099\n 467312 string characters out of 5408265\n 946721 words of memory out of 5000000\n 52788 multiletter control sequences out of 15000+600000\n 637762 words of font info for 76 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 128i,15n,123p,401b,587s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmss8.pfb>\nOutput written on main.pdf (2 pages, 54400 bytes).\nPDF statistics:\n 97 PDF objects out of 1000 (max. 8388607)\n 74 compressed objects within 1 object stream\n 5 named destinations out of 1000 (max. 500000)\n 43 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/365313", "answer_url": "https://tex.stackexchange.com/a/365361", "question_author": {"user_id": 131528, "name": "Alexander", "url": "https://tex.stackexchange.com/users/131528"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass{article}\n\n\\begin{document}", "replace": "\\documentclass{article}\n\\usepackage{luacode}\n\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": " \\directlua{tex.print(\"\\string\\\\input{sourced}\")}", "replace": " \\begin{luacode*}\n tex.print(\"\\\\input{sourced.tex}\")\n \\end{luacode*}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 8, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "e 4.\nLaTeX Font Info: Checking defaults for TU/lmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\n (./sourced.tex)\n! Undefined control sequence.\nl.8 \\MyCommand\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n)\n\nHere is how much of LuaTeX's memory you used:\n 692 strings out of 475635\n 100000,662416 words of node,token memory allocated\n 413 words of node memory still in use:\n 3 hlist, 1 vlist, 1 rule, 2 glue, 3 kern, 1 glyph, 5 attribute, 48 glue_spec,\n 5 attribute_list, 2 write nodes\n avail lists: 2:7,3:1,4:1,5:5,7:1,9:1\n 23625 multiletter control sequences out of 65536+600000\n 15 fonts using 723367 bytes\n 57i,1n,62p,130b,40s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nwarning (pdf backend): no pages of output.\n\nPDF statistics: 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 1048576)\n 1 words of extra memory for PDF output out of 10000 (max. 100000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Undefined control sequence.\n\nProject files:\n- main.tex\n- sourced.tex\n\nOther project files (edit them with ):\n\n`sourced.tex` (full file, line-numbered):\n```\n1: \\newcommand{\\MyCommand}{Hello World}\n2: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \\usepackage{luacode}\n3: \n4: \\begin{document}\n5: \\begin{luacode*}\n6: tex.print(\"\\\\input{sourced.tex}\")\n7: \\end{luacode*}\n8: \\MyCommand\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\ne 4.\nLaTeX Font Info: Checking defaults for TU/lmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\n (./sourced.tex)\n! Undefined control sequence.\nl.8 \\MyCommand\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n)\n\nHere is how much of LuaTeX's memory you used:\n 692 strings out of 475635\n 100000,662416 words of node,token memory allocated\n 413 words of node memory still in use:\n 3 hlist, 1 vlist, 1 rule, 2 glue, 3 kern, 1 glyph, 5 attribute, 48 glue_spec,\n 5 attribute_list, 2 write nodes\n avail lists: 2:7,3:1,4:1,5:5,7:1,9:1\n 23625 multiletter control sequences out of 65536+600000\n 15 fonts using 723367 bytes\n 57i,1n,62p,130b,40s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nwarning (pdf backend): no pages of output.\n\nPDF statistics: 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 1048576)\n 1 words of extra memory for PDF output out of 10000 (max. 100000000)\n```", "target": "\n<<<<<<< SEARCH\n \\begin{luacode*}\n tex.print(\"\\\\input{sourced.tex}\")\n \\end{luacode*}\n=======\n \\directlua{tex.print(\"\\string\\\\input{sourced}\")}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\documentclass{article}\n\\usepackage{luacode}\n\n\\begin{document}\n=======\n\\documentclass{article}\n\n\\begin{document}\n>>>>>>> REPLACE\n", "id": "texse_multi_640898", "doc": "texse_multi/640898", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/640898", "fix_answer": "accepted", "answer_id": 640902, "answer_score": 3, "fix_source": "answer_doc", "companions": ["sourced.tex"], "n_files": 2, "engine": "lualatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 640898, "accepted_answer_id": 640902, "title": "commands defined in external file and imported by lua are not recognized", "tags": ["macros", "luatex", "input", "lua"], "score": 1, "created": "2022-04-15", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Undefined control sequence.\n\nProject files:\n- main.tex\n- sourced.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \\usepackage{luacode}\n3: \n4: \\begin{document}\n5: \\begin{luacode*}\n6: tex.print(\"\\\\input{sourced.tex}\")\n7: \\end{luacode*}\n8: \\MyCommand\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\ne 4.\nLaTeX Font Info: Checking defaults for TU/lmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 4.\nLaTeX Font Info: ... okay on input line 4.\n (./sourced.tex)\n! Undefined control sequence.\nl.8 \\MyCommand\n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n)\n\nHere is how much of LuaTeX's memory you used:\n 692 strings out of 475635\n 100000,662416 words of node,token memory allocated\n 413 words of node memory still in use:\n 3 hlist, 1 vlist, 1 rule, 2 glue, 3 kern, 1 glyph, 5 attribute, 48 glue_spec,\n 5 attribute_list, 2 write nodes\n avail lists: 2:7,3:1,4:1,5:5,7:1,9:1\n 23625 multiletter control sequences out of 65536+600000\n 15 fonts using 723367 bytes\n 57i,1n,62p,130b,40s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nwarning (pdf backend): no pages of output.\n\nPDF statistics: 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 1048576)\n 1 words of extra memory for PDF output out of 10000 (max. 100000000)\n```", "question_url": "https://tex.stackexchange.com/q/640898", "answer_url": "https://tex.stackexchange.com/a/640902", "question_author": {"user_id": 134984, "name": "user32882", "url": "https://tex.stackexchange.com/users/134984"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[]{teach}\n\\geometry{hmargin=1cm,vmargin=1cm}", "replace": "\\usepackage{geometry}\n\\geometry{hmargin=1cm,vmargin=1cm}\n\\usepackage[]{teach}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 9, "text": "LaTeX Error: Option clash for package geometry.", "file": "main.tex", "fileLabel": null}], "log_tail": "ght=788.14136pt\n* \\oddsidemargin=-43.81725pt\n* \\evensidemargin=-43.81725pt\n* \\topmargin=-80.81725pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=10.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=57.0pt\n* \\marginparsep=11.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=9.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\nPackage babel Info: Main language set to 'french'.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 3375 strings out of 467099\n 62568 string characters out of 5408265\n 481680 words of memory out of 5000000\n 32742 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,198b,385s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11987 bytes).\nPDF statistics:\n 14 PDF objects out of 1000 (max. 8388607)\n 8 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: LaTeX Error: Option clash for package geometry.\n\nProject files:\n- main.tex\n- teach.sty\n\nOther project files (edit them with ):\n\n`teach.sty` (full file, line-numbered):\n```\n1: % THIS CODE IS IN TEACH PACKAGE SOURCE\n2: \\RequirePackage[%\n3: hmargin=2.5cm,\n4: vmargin=2cm\n5: %,showframe,showcrop\n6: ]{geometry}\n7: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[french]{babel}\n4: \\usepackage[T1]{fontenc}\n5: \n6: \\usepackage{geometry}\n7: \\geometry{hmargin=1cm,vmargin=1cm}\n8: \\usepackage[]{teach}\n9: \n10: \\begin{document}\n11: \n12: dsgsgsd\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nght=788.14136pt\n* \\oddsidemargin=-43.81725pt\n* \\evensidemargin=-43.81725pt\n* \\topmargin=-80.81725pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=10.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=57.0pt\n* \\marginparsep=11.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=9.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\nPackage babel Info: Main language set to 'french'.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 3375 strings out of 467099\n 62568 string characters out of 5408265\n 481680 words of memory out of 5000000\n 32742 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,198b,385s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11987 bytes).\nPDF statistics:\n 14 PDF objects out of 1000 (max. 8388607)\n 8 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\usepackage{geometry}\n\\geometry{hmargin=1cm,vmargin=1cm}\n\\usepackage[]{teach}\n=======\n\\usepackage[]{teach}\n\\geometry{hmargin=1cm,vmargin=1cm}\n>>>>>>> REPLACE\n", "id": "texse_multi_502312", "doc": "texse_multi/502312", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/502312", "fix_answer": "accepted", "answer_id": 502317, "answer_score": 1, "fix_source": "answer_doc", "companions": ["teach.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Option clash for package geometry.", "changed_files": ["main.tex"], "question_id": 502312, "accepted_answer_id": 502317, "title": "PassOptionsToPackage Order / priority (solving a package class)", "tags": ["packages"], "score": 1, "created": "2019-07-31", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: LaTeX Error: Option clash for package geometry.\n\nProject files:\n- main.tex\n- teach.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper]{report}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[french]{babel}\n4: \\usepackage[T1]{fontenc}\n5: \n6: \\usepackage{geometry}\n7: \\geometry{hmargin=1cm,vmargin=1cm}\n8: \\usepackage[]{teach}\n9: \n10: \\begin{document}\n11: \n12: dsgsgsd\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nght=788.14136pt\n* \\oddsidemargin=-43.81725pt\n* \\evensidemargin=-43.81725pt\n* \\topmargin=-80.81725pt\n* \\headheight=12.0pt\n* \\headsep=25.0pt\n* \\topskip=10.0pt\n* \\footskip=30.0pt\n* \\marginparwidth=57.0pt\n* \\marginparsep=11.0pt\n* \\columnsep=10.0pt\n* \\skip\\footins=9.0pt plus 4.0pt minus 2.0pt\n* \\hoffset=0.0pt\n* \\voffset=0.0pt\n* \\mag=1000\n* \\@twocolumnfalse\n* \\@twosidefalse\n* \\@mparswitchfalse\n* \\@reversemarginfalse\n* (1in=72.27pt=25.4mm, 1cm=28.453pt)\n\nPackage babel Info: Main language set to 'french'.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 3375 strings out of 467099\n 62568 string characters out of 5408265\n 481680 words of memory out of 5000000\n 32742 multiletter control sequences out of 15000+600000\n 628484 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,198b,385s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 11987 bytes).\nPDF statistics:\n 14 PDF objects out of 1000 (max. 8388607)\n 8 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/502312", "answer_url": "https://tex.stackexchange.com/a/502317", "question_author": {"user_id": 152809, "name": "Matheod", "url": "https://tex.stackexchange.com/users/152809"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 152809, "name": "Matheod", "url": "https://tex.stackexchange.com/users/152809"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "hello this is now working\n\\begin{greeklist}\n \\item anteater\n \\item bear\n \\item cow\n\\end{greeklist}\n\\begin{Greeklist}\n \\item Anteater\n \\item Bear\n \\item Cow\n\\end{Greeklist}", "replace": "hello this is not working", "type": "real"}, {"file": "myclass.cls", "search": "\\RequirePackage{chemgreek,textgreek,enumitem}\n \\newcommand*\\alphgreek[1]{\\expandafter\\@alphgreek\\csname c@#1\\endcsname}\n \\newcommand*\\@alphgreek[1]{\\csname chemgreek_int_to_greek:n\\endcsname{#1}}\n \\newcommand*\\Alphgreek[1]{\\expandafter\\@Alphgreek\\csname c@#1\\endcsname}\n \\newcommand*\\@Alphgreek[1]{\\csname chemgreek_int_to_Greek:n\\endcsname{#1}}", "replace": "\\RequirePackage{chemgreek,textgreek}\n \\renewcommand*\\alphgreek[1]{\\expandafter\\@alphgreek\\csname c@#1\\endcsname}\n \\renewcommand*\\@alphgreek[1]{\\csname chemgreek_int_to_greek:n\\endcsname{#1}}\n \\renewcommand*\\Alphgreek[1]{\\expandafter\\@Alphgreek\\csname c@#1\\endcsname}\n \\renewcommand*\\@Alphgreek[1]{\\csname chemgreek_int_to_Greek:n\\endcsname{#1}}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "myclass.cls"], "single_shot_visible": false, "error_lines": [{"line": 5, "text": "LaTeX Error: Command \\alphgreek undefined.", "file": "main.tex", "fileLabel": null}, {"line": 6, "text": "LaTeX Error: Command \\@alphgreek undefined.", "file": "main.tex", "fileLabel": null}, {"line": 7, "text": "LaTeX Error: Command \\Alphgreek undefined.", "file": "main.tex", "fileLabel": null}, {"line": 8, "text": "LaTeX Error: Command \\@Alphgreek undefined.", "file": "main.tex", "fileLabel": null}, {"line": 9, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 10, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}], "log_tail": "on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for LGR/cmr/m/n on input line 3.\nLaTeX Font Info: Trying to load font information for LGR+cmr on input line 3\n.\n(/usr/local/texlive/2026/texmf-dist/tex/latex/cbfonts-fd/lgrcmr.fd\nFile: lgrcmr.fd 2017/07/29 v1.2 Greek European Computer Regular\n)\nLaTeX Font Info: ... okay on input line 3.\n\nPackage chemgreek Info: Activating mapping `textgreek' on line 3.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2400 strings out of 467099\n 43440 string characters out of 5408265\n 443448 words of memory out of 5000000\n 31774 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,459b,122s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14026 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 5: LaTeX Error: Command \\alphgreek undefined.\n- line 6: LaTeX Error: Command \\@alphgreek undefined.\n- line 7: LaTeX Error: Command \\Alphgreek undefined.\n- line 8: LaTeX Error: Command \\@Alphgreek undefined.\n- line 9: Undefined control sequence.\n- line 10: Undefined control sequence.\n\nProject files:\n- main.tex\n- myclass.cls\n\nOther project files (edit them with ):\n\n`myclass.cls` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}\n2: \\ProvidesClass{myclass}[2019 myclass]\n3: \\LoadClass[twocolumn]{article}\n4: \\RequirePackage{chemgreek,textgreek,enumitem}\n5: \\newcommand*\\alphgreek[1]{\\expandafter\\@alphgreek\\csname c@#1\\endcsname}\n6: \\newcommand*\\@alphgreek[1]{\\csname chemgreek_int_to_greek:n\\endcsname{#1}}\n7: \\newcommand*\\Alphgreek[1]{\\expandafter\\@Alphgreek\\csname c@#1\\endcsname}\n8: \\newcommand*\\@Alphgreek[1]{\\csname chemgreek_int_to_Greek:n\\endcsname{#1}}\n9: \\AddEnumerateCounter*{\\alphgreek}{\\@alphgreek}{\\chemalpha}\n10: \\AddEnumerateCounter*{\\Alphgreek}{\\@Alphgreek}{\\chemAlpha}\n11: \n12: \\newenvironment{greeklist}{\\begin{enumerate}[label=(\\alphgreek*)]}{\\end{enumerate}}\n13: \\newenvironment{Greeklist}{\\begin{enumerate}[label=(\\Alphgreek*)]}{\\end{enumerate}}\n14: \n15: \\endinput\n16: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{myclass}\n2: \\usepackage[utf8]{inputenc}\n3: \\begin{document}\n4: hello this is not working\n5: \\end{document}\n6: \n```\n\nCompile log (tail):\n```\non input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for LGR/cmr/m/n on input line 3.\nLaTeX Font Info: Trying to load font information for LGR+cmr on input line 3\n.\n(/usr/local/texlive/2026/texmf-dist/tex/latex/cbfonts-fd/lgrcmr.fd\nFile: lgrcmr.fd 2017/07/29 v1.2 Greek European Computer Regular\n)\nLaTeX Font Info: ... okay on input line 3.\n\nPackage chemgreek Info: Activating mapping `textgreek' on line 3.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2400 strings out of 467099\n 43440 string characters out of 5408265\n 443448 words of memory out of 5000000\n 31774 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,459b,122s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14026 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\RequirePackage{chemgreek,textgreek}\n \\renewcommand*\\alphgreek[1]{\\expandafter\\@alphgreek\\csname c@#1\\endcsname}\n \\renewcommand*\\@alphgreek[1]{\\csname chemgreek_int_to_greek:n\\endcsname{#1}}\n \\renewcommand*\\Alphgreek[1]{\\expandafter\\@Alphgreek\\csname c@#1\\endcsname}\n \\renewcommand*\\@Alphgreek[1]{\\csname chemgreek_int_to_Greek:n\\endcsname{#1}}\n=======\n\\RequirePackage{chemgreek,textgreek,enumitem}\n \\newcommand*\\alphgreek[1]{\\expandafter\\@alphgreek\\csname c@#1\\endcsname}\n \\newcommand*\\@alphgreek[1]{\\csname chemgreek_int_to_greek:n\\endcsname{#1}}\n \\newcommand*\\Alphgreek[1]{\\expandafter\\@Alphgreek\\csname c@#1\\endcsname}\n \\newcommand*\\@Alphgreek[1]{\\csname chemgreek_int_to_Greek:n\\endcsname{#1}}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\nhello this is not working\n=======\nhello this is now working\n\\begin{greeklist}\n \\item anteater\n \\item bear\n \\item cow\n\\end{greeklist}\n\\begin{Greeklist}\n \\item Anteater\n \\item Bear\n \\item Cow\n\\end{Greeklist}\n>>>>>>> REPLACE\n", "id": "texse_multi_514580", "doc": "texse_multi/514580", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/514580", "fix_answer": "accepted", "answer_id": 514583, "answer_score": 1, "fix_source": "multi", "companions": ["myclass.cls"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS undefined.", "changed_files": ["main.tex", "myclass.cls"], "question_id": 514580, "accepted_answer_id": 514583, "title": "Greek-letter enumerate in .cls file", "tags": ["environments", "enumerate", "document-classes"], "score": 3, "created": "2019-11-01", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 5: LaTeX Error: Command \\alphgreek undefined.\n- line 6: LaTeX Error: Command \\@alphgreek undefined.\n- line 7: LaTeX Error: Command \\Alphgreek undefined.\n- line 8: LaTeX Error: Command \\@Alphgreek undefined.\n- line 9: Undefined control sequence.\n- line 10: Undefined control sequence.\n\nProject files:\n- main.tex\n- myclass.cls\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{myclass}\n2: \\usepackage[utf8]{inputenc}\n3: \\begin{document}\n4: hello this is not working\n5: \\end{document}\n6: \n```\n\nCompile log (tail):\n```\non input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 3.\nLaTeX Font Info: ... okay on input line 3.\nLaTeX Font Info: Checking defaults for LGR/cmr/m/n on input line 3.\nLaTeX Font Info: Trying to load font information for LGR+cmr on input line 3\n.\n(/usr/local/texlive/2026/texmf-dist/tex/latex/cbfonts-fd/lgrcmr.fd\nFile: lgrcmr.fd 2017/07/29 v1.2 Greek European Computer Regular\n)\nLaTeX Font Info: ... okay on input line 3.\n\nPackage chemgreek Info: Activating mapping `textgreek' on line 3.\n\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2400 strings out of 467099\n 43440 string characters out of 5408265\n 443448 words of memory out of 5000000\n 31774 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,459b,122s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14026 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/514580", "answer_url": "https://tex.stackexchange.com/a/514583", "question_author": {"user_id": 199568, "name": "Vebjorn", "url": "https://tex.stackexchange.com/users/199568"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": null, "name": "user194703", "url": null}} {"bib": false, "lane": "project", "file_edits": [{"file": "dummy_test.sty", "search": "{}\n{0pt} % <---------\n{\\thmname{#1}\\thmnumber{ #2}\\mathsecpunc\\thmnote{ #3}\\newline}", "replace": "{}\n{}\n{\\thmname{#1}\\thmnumber{ #2}\\mathsecpunc\\thmnote{ #3}\\newline}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["dummy_test.sty"], "single_shot_visible": true, "error_lines": [{"line": 8, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}], "log_tail": " unit of measure (pt inserted).\n \n \\relax \nl.8 ...in{remark_unnumbered}{Claim}[.][Hello][2ex]\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1738 strings out of 467099\n 26915 string characters out of 5408265\n 441082 words of memory out of 5000000\n 31104 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 71i,5n,79p,226b,170s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 21873 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Missing number, treated as zero.\n\nProject files:\n- dummy_test.sty\n- main.tex\n\nOther project files (edit them with ):\n\n`dummy_test.sty` (full file, line-numbered):\n```\n1: \\RequirePackage{changepage}\n2: \\RequirePackage{amsthm}\n3: \\RequirePackage{amsmath}\n4: \\RequirePackage{amsfonts}\n5: \\RequirePackage{xargs}\n6: \n7: %--------------------------------------------------------------------------\n8: % Package Options/Commands\n9: %--------------------------------------------------------------------------\n10: \n11: % Blank commands used for a abstract math environment\n12: \n13: \\newcommand{\\mathsecheader}{}\n14: \\newcommand{\\mathsecpunc}{}\n15: \n16: % reset blank commands\n17: \n18: \\newcommand{\\reset}{%\n19: \\renewcommand{\\mathsecheader}{}%\n20: \\renewcommand{\\mathsecpunc}{}%\n21: }\n22: \n23: %--------------------------------------------------------------------------\n24: % Main body\n25: %--------------------------------------------------------------------------\n26: \n27: \\newtheoremstyle{augmented_remark}\n28: {0.5\\topsep}\n29: {0.5\\topsep}\n30: {\\normalfont}\n31: {}\n32: {\\itshape}\n33: {}\n34: {0pt} % <---------\n35: {\\thmname{#1}\\thmnumber{ #2}\\mathsecpunc\\thmnote{ #3}\\newline}\n36: \n37: \\theoremstyle{augmented_remark}\n38: \\newtheorem*{tremark_unnumbered}{\\mathsecheader}\n39: \n40: \\newenvironmentx*{remark_unnumbered}[4][2={:},3={ },4={0pt},usedefault]%\n41: {\\ignorespaces%\n42: \\renewcommand{\\mathsecheader}{#1}%\n43: \\renewcommand{\\mathsecpunc}{#2}%\n44: \\begin{tremark_unnumbered}[#3]%\n45: \\begin{adjustwidth}{#4}{#4}%\n46: }\n47: {\\end{adjustwidth}\\end{tremark_unnumbered}\\reset\\ignorespacesafterend}\n48: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Testing document for proof formatting\n2: \\documentclass{article}\n3: \n4: \\usepackage{dummy_test}\n5: \n6: \\begin{document}\n7: \n8: \\begin{remark_unnumbered}{Claim}[.][Hello][2ex]\n9: hello\n10: \\end{remark_unnumbered}\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nunit of measure (pt inserted).\n \n \\relax \nl.8 ...in{remark_unnumbered}{Claim}[.][Hello][2ex]\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1738 strings out of 467099\n 26915 string characters out of 5408265\n 441082 words of memory out of 5000000\n 31104 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 71i,5n,79p,226b,170s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 21873 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n{}\n{}\n{\\thmname{#1}\\thmnumber{ #2}\\mathsecpunc\\thmnote{ #3}\\newline}\n=======\n{}\n{0pt} % <---------\n{\\thmname{#1}\\thmnumber{ #2}\\mathsecpunc\\thmnote{ #3}\\newline}\n>>>>>>> REPLACE\n", "id": "texse_multi_539370", "doc": "texse_multi/539370", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/539370", "fix_answer": "accepted", "answer_id": 539371, "answer_score": 1, "fix_source": "snippet", "companions": ["dummy_test.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing number, treated as zero.", "changed_files": ["dummy_test.sty"], "question_id": 539370, "accepted_answer_id": 539371, "title": "New environment issues arguments xargs.Missing Number and Illegal unit of measure", "tags": ["amsmath", "amsthm", "optional-arguments", "arguments", "changepage"], "score": 1, "created": "2020-04-18", "error_message": "Missing number, treated as zero.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Missing number, treated as zero.\n\nProject files:\n- dummy_test.sty\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % Testing document for proof formatting\n2: \\documentclass{article}\n3: \n4: \\usepackage{dummy_test}\n5: \n6: \\begin{document}\n7: \n8: \\begin{remark_unnumbered}{Claim}[.][Hello][2ex]\n9: hello\n10: \\end{remark_unnumbered}\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nunit of measure (pt inserted).\n \n \\relax \nl.8 ...in{remark_unnumbered}{Claim}[.][Hello][2ex]\n \nDimensions can be in units of em, ex, in, pt, pc,\ncm, mm, dd, cc, nd, nc, bp, or sp; but yours is a new one!\nI'll assume that you meant to say pt, for printer's points.\nTo recover gracefully from this error, it's best to\ndelete the erroneous units; e.g., type `2' to delete\ntwo letters. (See Chapter 27 of The TeXbook.)\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1738 strings out of 467099\n 26915 string characters out of 5408265\n 441082 words of memory out of 5000000\n 31104 multiletter control sequences out of 15000+600000\n 628067 words of font info for 41 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 71i,5n,79p,226b,170s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 21873 bytes).\nPDF statistics:\n 18 PDF objects out of 1000 (max. 8388607)\n 10 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/539370", "answer_url": "https://tex.stackexchange.com/a/539371", "question_author": {"user_id": 213077, "name": "VilePoison", "url": "https://tex.stackexchange.com/users/213077"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\renewcommand{\\doitext}{}", "replace": "\\renewcommand{\\doi}[1]{\\href{https://doi.org/#1}{#1}}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 32, "text": "Missing $ inserted.", "file": null, "fileLabel": "main.bbl"}, {"line": 32, "text": "Missing $ inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": " above.)\nWith luck, this will get me unwedged. But if you\nreally didn't forget anything, try typing `2' now; then\nmy insertion and my current dilemma will both disappear.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8922 strings out of 467099\n 137569 string characters out of 5408265\n 558404 words of memory out of 5000000\n 38191 multiletter control sequences out of 15000+600000\n 631717 words of font info for 53 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,246b,440s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>\nOutput written on main.pdf (1 page, 48261 bytes).\nPDF statistics:\n 36 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 4 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 32: Missing $ inserted.\n- line 32: Missing $ inserted.\n\nProject files:\n- main.tex\n- mwe.bib\n\nOther project files (edit them with ):\n\n`mwe.bib` (full file, line-numbered):\n```\n1: @article{notaraParentalWeightStatus2019,\n2: title = {Parental Weight Status and Early Adolescence Body Weight in Association with Socioeconomic Factors},\n3: author = {Notara, Venetia and Magriplis, Emmanuella and Prapas, Christos and Antonogeorgos, George and {Rojas-Gil}, Andrea Paola and Kornilaki, Ekaterina N. and Lagiou, Areti and Panagiotakos, Demosthenes B.},\n4: year = {2019},\n5: journal = {Journal of Education and Health Promotion},\n6: volume = {8},\n7: pages = {77},\n8: issn = {2277-9531},\n9: doi = {10.4103/jehp.jehp_14_19},\n10: abstract = {BACKGROUND: Childhood obesity remains a major health issue. The understanding of the multifactorial nature of childhood obesity remains the cornerstone to eliminate the rising trends. This study aimed to examine the association between parental and childhood weight status, in relation to various socioeconomic (SE) factors. METHODS: A cross-sectional survey was conducted including 1190 children aged 10-12 years and their parents, during school years 2014-2016. Primary schools from five Greek counties (including Athens metropolitan area) were randomly selected. Parental and child data were collected through self-administered, anonymous questionnaires. Children's weight status was based on gender- and age-specific tables derived from the International Obesity Task Force body mass index (BMI) cut offs. General Linear Model (GLM), Univariate and multivariate analyses were applied. Multiple logistic regressions was used to determine the association between children and parents' weight status. RESULTS: Childhood prevalence of overweight and obesity was 25.9\\% (21.8\\% overweight and 4.1\\% obese), with prevalence being significantly higher in males (31.7\\% compared to 21.3\\%; P for gender differences {$<$} 0.001). The percent of overweight and obese male (34.4\\% and 43.1\\%) and female children (20.3\\% and 31.8\\%) significantly increased with paternal overweight and obesity status, respectively. The same relationship was observed between male children and maternal overweight and obesity status (43.4\\% and 65.7\\%). This was not evident among females (27\\% and 23.2\\%). Regression analysis showed a significant positive association with parental BMI, a negative association with both parental educational levels (low to high), living space, and parental age (P {\\$<\\$} 0.05, for all). Children's likelihood of being overweight or obese increased significantly with increasing parental weight status (P {\\$<\\$} 0.001). CONCLUSIONS: Parental weight status remained the most significant predictive factor for early adolescence obesity among various SE factors. Health promotion strategies should consider parental education as an effective childhood obesity preventive measure.},\n11: langid = {english},\n12: pmcid = {PMC6512222},\n13: pmid = {31143794},\n14: keywords = {Children weight status,health promotion,obesity risk factors,parental weight status,socioeconomic factors}\n15: }\n16: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper]{article}\n2: \\usepackage[natbibapa]{apacite}\n3: \\bibliographystyle{apacite}\n4: \\usepackage[colorlinks,citecolor=blue,urlcolor=blue, linkcolor=blue, bookmarks=false,hypertexnames=true]{hyperref}\n5: \\usepackage{doi}\n6: \\renewcommand{\\doi}[1]{\\href{https://doi.org/#1}{#1}}\n7: \n8: \\begin{document}\n9: \\cite{notaraParentalWeightStatus2019}\n10: \\bibliography{mwe}\n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nabove.)\nWith luck, this will get me unwedged. But if you\nreally didn't forget anything, try typing `2' now; then\nmy insertion and my current dilemma will both disappear.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8922 strings out of 467099\n 137569 string characters out of 5408265\n 558404 words of memory out of 5000000\n 38191 multiletter control sequences out of 15000+600000\n 631717 words of font info for 53 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,246b,440s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>\nOutput written on main.pdf (1 page, 48261 bytes).\nPDF statistics:\n 36 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 4 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\renewcommand{\\doi}[1]{\\href{https://doi.org/#1}{#1}}\n=======\n\\renewcommand{\\doitext}{}\n>>>>>>> REPLACE\n", "id": "texse_multi_666856", "doc": "texse_multi/666856", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/666856", "fix_answer": "top", "answer_id": 666871, "answer_score": 4, "fix_source": "answer_doc", "companions": ["mwe.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing $ inserted.", "changed_files": ["main.tex"], "question_id": 666856, "accepted_answer_id": 666859, "title": "How to escape characters within variables used in command definitions?", "tags": ["macros", "natbib", "doi", "renewcommand"], "score": 2, "created": "2022-11-29", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 32: Missing $ inserted.\n- line 32: Missing $ inserted.\n\nProject files:\n- main.tex\n- mwe.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt,a4paper]{article}\n2: \\usepackage[natbibapa]{apacite}\n3: \\bibliographystyle{apacite}\n4: \\usepackage[colorlinks,citecolor=blue,urlcolor=blue, linkcolor=blue, bookmarks=false,hypertexnames=true]{hyperref}\n5: \\usepackage{doi}\n6: \\renewcommand{\\doi}[1]{\\href{https://doi.org/#1}{#1}}\n7: \n8: \\begin{document}\n9: \\cite{notaraParentalWeightStatus2019}\n10: \\bibliography{mwe}\n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nabove.)\nWith luck, this will get me unwedged. But if you\nreally didn't forget anything, try typing `2' now; then\nmy insertion and my current dilemma will both disappear.\n\n)\n\nPackage natbib Warning: There were undefined citations.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux\n\nPackage natbib Warning: Citation(s) may have changed.\n(natbib) Rerun to get citations correct.\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8922 strings out of 467099\n 137569 string characters out of 5408265\n 558404 words of memory out of 5000000\n 38191 multiletter control sequences out of 15000+600000\n 631717 words of font info for 53 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 74i,5n,79p,246b,440s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>\nOutput written on main.pdf (1 page, 48261 bytes).\nPDF statistics:\n 36 PDF objects out of 1000 (max. 8388607)\n 24 compressed objects within 1 object stream\n 4 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/666856", "answer_url": "https://tex.stackexchange.com/a/666871", "question_author": {"user_id": 22398, "name": "Josh Pinto", "url": "https://tex.stackexchange.com/users/22398"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 2388, "name": "Ulrike Fischer", "url": "https://tex.stackexchange.com/users/2388"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass[a4paper,12pt,openright,twoside]{book}\n{\\renewcommand{\\bibname}{References}}", "replace": "\\documentclass[a4paper,12pt,openright,twoside]{book}\n\\usepackage{textcomp}\n\\usepackage{graphicx}\n\\usepackage{amsfonts}\n\\usepackage{amsmath}\n\\usepackage{amsthm}\n\\usepackage{amssymb}\n\\usepackage[english]{babel}\n{\\renewcommand{\\bibname}{References}}", "type": "real"}, {"file": "main.tex", "search": "\\NewDocumentCommand\\rom{m}{\\@Roman{#1}}\n\\makeatother", "replace": "\\newcommand*{\\rom}[1]{\\expandafter\\@slowromancap\\romannumeral #1@}\n\\makeatother\n\\usepackage{hyperref}\n\\hypersetup{\n colorlinks=true,\n linkcolor=blue,\n citecolor=red,\n}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 22, "text": "Missing number, treated as zero.", "file": "main.tex", "fileLabel": null}], "log_tail": "}\n\n{/usr/local/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-ts1.enc}]\n\n[2\n\n] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 18442 strings out of 467099\n 324832 string characters out of 5408265\n 955500 words of memory out of 5000000\n 47601 multiletter control sequences out of 15000+600000\n 629661 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1877b,1780s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 35719 bytes).\nPDF statistics:\n 45 PDF objects out of 1000 (max. 8388607)\n 31 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 22: Missing number, treated as zero.\n\nProject files:\n- Biblio.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`Biblio.bib` (full file, line-numbered):\n```\n1: @book{xyz,\n2: title={abcd},\n3: author={xyz},\n4: year={2012},\n5: }\n6: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,12pt,openright,twoside]{book}\n2: \\usepackage{textcomp}\n3: \\usepackage{graphicx}\n4: \\usepackage{amsfonts}\n5: \\usepackage{amsmath}\n6: \\usepackage{amsthm}\n7: \\usepackage{amssymb}\n8: \\usepackage[english]{babel}\n9: {\\renewcommand{\\bibname}{References}}\n10: \\usepackage[backend=bibtex,style=alphabetic]{biblatex} %Imports biblatex package\n11: \\addbibresource{Biblio.bib}\n12: \\makeatletter\n13: \\newcommand*{\\rom}[1]{\\expandafter\\@slowromancap\\romannumeral #1@}\n14: \\makeatother\n15: \\usepackage{hyperref}\n16: \\hypersetup{\n17: colorlinks=true,\n18: linkcolor=blue,\n19: citecolor=red,\n20: }\n21: \\begin{document}\n22: This is \\cite[\\S\\rom{17} Theorem 4]{xyz}\n23: \\printbibliography\n24: \\end{document}\n25: \n```\n\nCompile log (tail):\n```\n}\n\n{/usr/local/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-ts1.enc}]\n\n[2\n\n] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 18442 strings out of 467099\n 324832 string characters out of 5408265\n 955500 words of memory out of 5000000\n 47601 multiletter control sequences out of 15000+600000\n 629661 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1877b,1780s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 35719 bytes).\nPDF statistics:\n 45 PDF objects out of 1000 (max. 8388607)\n 31 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\newcommand*{\\rom}[1]{\\expandafter\\@slowromancap\\romannumeral #1@}\n\\makeatother\n\\usepackage{hyperref}\n\\hypersetup{\n colorlinks=true,\n linkcolor=blue,\n citecolor=red,\n}\n=======\n\\NewDocumentCommand\\rom{m}{\\@Roman{#1}}\n\\makeatother\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\documentclass[a4paper,12pt,openright,twoside]{book}\n\\usepackage{textcomp}\n\\usepackage{graphicx}\n\\usepackage{amsfonts}\n\\usepackage{amsmath}\n\\usepackage{amsthm}\n\\usepackage{amssymb}\n\\usepackage[english]{babel}\n{\\renewcommand{\\bibname}{References}}\n=======\n\\documentclass[a4paper,12pt,openright,twoside]{book}\n{\\renewcommand{\\bibname}{References}}\n>>>>>>> REPLACE\n", "id": "texse_multi_714575", "doc": "texse_multi/714575", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/714575", "fix_answer": "accepted", "answer_id": 714581, "answer_score": 5, "fix_source": "answer_doc", "companions": ["Biblio.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Missing number, treated as zero.", "changed_files": ["main.tex"], "question_id": 714575, "accepted_answer_id": 714581, "title": "Roman numeral within \\cite command latex", "tags": ["citing", "roman-numerals"], "score": 0, "created": "2024-04-02", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 22: Missing number, treated as zero.\n\nProject files:\n- Biblio.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[a4paper,12pt,openright,twoside]{book}\n2: \\usepackage{textcomp}\n3: \\usepackage{graphicx}\n4: \\usepackage{amsfonts}\n5: \\usepackage{amsmath}\n6: \\usepackage{amsthm}\n7: \\usepackage{amssymb}\n8: \\usepackage[english]{babel}\n9: {\\renewcommand{\\bibname}{References}}\n10: \\usepackage[backend=bibtex,style=alphabetic]{biblatex} %Imports biblatex package\n11: \\addbibresource{Biblio.bib}\n12: \\makeatletter\n13: \\newcommand*{\\rom}[1]{\\expandafter\\@slowromancap\\romannumeral #1@}\n14: \\makeatother\n15: \\usepackage{hyperref}\n16: \\hypersetup{\n17: colorlinks=true,\n18: linkcolor=blue,\n19: citecolor=red,\n20: }\n21: \\begin{document}\n22: This is \\cite[\\S\\rom{17} Theorem 4]{xyz}\n23: \\printbibliography\n24: \\end{document}\n25: \n```\n\nCompile log (tail):\n```\n}\n\n{/usr/local/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-ts1.enc}]\n\n[2\n\n] [3] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\nPackage rerunfilecheck Info: File `main.out' has not changed.\n(rerunfilecheck) Checksum: D41D8CD98F00B204E9800998ECF8427E;0.\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 18442 strings out of 467099\n 324832 string characters out of 5408265\n 955500 words of memory out of 5000000\n 47601 multiletter control sequences out of 15000+600000\n 629661 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,67p,1877b,1780s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (3 pages, 35719 bytes).\nPDF statistics:\n 45 PDF objects out of 1000 (max. 8388607)\n 31 compressed objects within 1 object stream\n 6 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/714575", "answer_url": "https://tex.stackexchange.com/a/714581", "question_author": {"user_id": 317722, "name": "user631874", "url": "https://tex.stackexchange.com/users/317722"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 1090, "name": "David Carlisle", "url": "https://tex.stackexchange.com/users/1090"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "% this is just for getting a self-contained example\n% use you normal library.bib file also in \\addbibresource\n\\documentclass[12pt]{article}\n% load fontspec for OpenType support\n\\usepackage[no-math]{fontspec}\n% Since the font has no lowercase Greek, load also ucharclasses\n\\usepackage[Greek]{ucharclasses}\n% bibliography package\n\\usepackage{biblatex}\n% define a font with Greek support\n% depending on your setup you might need to type\n% \\newfontfamily{\\greekfont}[Scale=MatchLowercase]{cmunrm.otf}\n\\newfontfamily{\\greekfont}[Scale=MatchLowercase]{CMU Serif}\n% when Greek is found, change to \\greekfont\n\\setTransitionsForGreek{\\begingroup\\greekfont}{\\endgroup}\n\\addbibresource{\\jobname.bib}", "replace": "\\documentclass[12pt]{article}\n\\usepackage[utf8]{inputenc}\n\\usepackage[backend=biber, bibencoding=utf8]{biblatex}\n\\addbibresource{library.bib}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 10, "text": "LaTeX Error: Unicode character τ (U+03C4)", "file": "main.tex", "fileLabel": null}], "log_tail": "on.\nType H for immediate help.\n ... \n \nl.10 \\end\n {document}\nYou may provide a definition with\n\\DeclareUnicodeCharacter \n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8783 strings out of 467099\n 172572 string characters out of 5408265\n 1007911 words of memory out of 5000000\n 38100 multiletter control sequences out of 15000+600000\n 628972 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (1 page, 37781 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: LaTeX Error: Unicode character τ (U+03C4)\n\nProject files:\n- library.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[backend=biber, bibencoding=utf8]{biblatex}\n4: \\addbibresource{library.bib}\n5: \n6: \\begin{document}\n7: Here is the citation: \\cite{duchowski_2012}\n8: \n9: \\printbibliography\n10: \\end{document}\n11: \n```\n\nCompile log (tail):\n```\non.\nType H for immediate help.\n ... \n \nl.10 \\end\n {document}\nYou may provide a definition with\n\\DeclareUnicodeCharacter \n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8783 strings out of 467099\n 172572 string characters out of 5408265\n 1007911 words of memory out of 5000000\n 38100 multiletter control sequences out of 15000+600000\n 628972 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (1 page, 37781 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\documentclass[12pt]{article}\n\\usepackage[utf8]{inputenc}\n\\usepackage[backend=biber, bibencoding=utf8]{biblatex}\n\\addbibresource{library.bib}\n=======\n% this is just for getting a self-contained example\n% use you normal library.bib file also in \\addbibresource\n\\documentclass[12pt]{article}\n% load fontspec for OpenType support\n\\usepackage[no-math]{fontspec}\n% Since the font has no lowercase Greek, load also ucharclasses\n\\usepackage[Greek]{ucharclasses}\n% bibliography package\n\\usepackage{biblatex}\n% define a font with Greek support\n% depending on your setup you might need to type\n% \\newfontfamily{\\greekfont}[Scale=MatchLowercase]{cmunrm.otf}\n\\newfontfamily{\\greekfont}[Scale=MatchLowercase]{CMU Serif}\n% when Greek is found, change to \\greekfont\n\\setTransitionsForGreek{\\begingroup\\greekfont}{\\endgroup}\n\\addbibresource{\\jobname.bib}\n>>>>>>> REPLACE\n", "id": "texse_multi_141904", "doc": "texse_multi/141904", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/141904", "fix_answer": "accepted", "answer_id": 141954, "answer_score": 3, "fix_source": "answer_doc", "companions": ["library.bib"], "n_files": 2, "engine": "xelatex", "error_category": "LaTeX Error: Unicode character τ (U+NCN)", "changed_files": ["main.tex"], "question_id": 141904, "accepted_answer_id": 141954, "title": "Typesetting Greek characters in bibliography", "tags": ["fonts", "biblatex", "greek"], "score": 2, "created": "2013-11-02", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 10: LaTeX Error: Unicode character τ (U+03C4)\n\nProject files:\n- library.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[backend=biber, bibencoding=utf8]{biblatex}\n4: \\addbibresource{library.bib}\n5: \n6: \\begin{document}\n7: Here is the citation: \\cite{duchowski_2012}\n8: \n9: \\printbibliography\n10: \\end{document}\n11: \n```\n\nCompile log (tail):\n```\non.\nType H for immediate help.\n ... \n \nl.10 \\end\n {document}\nYou may provide a definition with\n\\DeclareUnicodeCharacter \n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 8783 strings out of 467099\n 172572 string characters out of 5408265\n 1007911 words of memory out of 5000000\n 38100 multiletter control sequences out of 15000+600000\n 628972 words of font info for 44 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb>\nOutput written on main.pdf (1 page, 37781 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/141904", "answer_url": "https://tex.stackexchange.com/a/141954", "question_author": {"user_id": 39370, "name": "Rakurai", "url": "https://tex.stackexchange.com/users/39370"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "%\\usepackage{lmodern}\n\\usepackage[english, russian]{babel}\n\\usepackage{cite}\n\\bibliographystyle{alpha}", "replace": "\\usepackage[english, russian]{babel}\n\\usepackage{apacite}", "type": "real"}, {"file": "main.tex", "search": "\n\\cite{zz}", "replace": "\nstart\n\\cite{zz}", "type": "real"}, {"file": "main.tex", "search": "\n\\bibliography{d}", "replace": "\n\\bibliographystyle{alpha}\n\\bibliography{d}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 9, "text": "Use of \\@year@ doesn't match its definition.", "file": "main.tex", "fileLabel": null}], "log_tail": "'.\n! Use of \\@year@ doesn't match its definition.\n\\Y@zz ->\\@year@ Z\n zz18\nl.9 \\cite{zz}\n \nIf you say, e.g., `\\def\\a1{...}', then you must always\nput `1' after `\\a', since control sequence names are\nmade up of letters only. The macro here has not been\nfollowed by the required stuff, so I'm ignoring it.\n\n(./main.bbl) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}] (./main.\naux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2979 strings out of 467099\n 49623 string characters out of 5408265\n 470803 words of memory out of 5000000\n 32340 multiletter control sequences out of 15000+600000\n 632080 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 46i,5n,44p,233b,197s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 34191 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: Use of \\@year@ doesn't match its definition.\n\nProject files:\n- d.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`d.bib` (full file, line-numbered):\n```\n1: @book{zz,\n2: title={Math ZZZ},\n3: author={Zzzz},\n4: year={2018},\n5: publisher={Litres}\n6: }\n7: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage[english, russian]{babel}\n5: \\usepackage{apacite}\n6: \\begin{document}\n7: \n8: start\n9: \\cite{zz}\n10: \n11: \n12: \\bibliographystyle{alpha}\n13: \\bibliography{d}\n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n'.\n! Use of \\@year@ doesn't match its definition.\n\\Y@zz ->\\@year@ Z\n zz18\nl.9 \\cite{zz}\n \nIf you say, e.g., `\\def\\a1{...}', then you must always\nput `1' after `\\a', since control sequence names are\nmade up of letters only. The macro here has not been\nfollowed by the required stuff, so I'm ignoring it.\n\n(./main.bbl) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}] (./main.\naux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2979 strings out of 467099\n 49623 string characters out of 5408265\n 470803 words of memory out of 5000000\n 32340 multiletter control sequences out of 15000+600000\n 632080 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 46i,5n,44p,233b,197s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 34191 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\bibliographystyle{alpha}\n\\bibliography{d}\n=======\n\n\\bibliography{d}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\nstart\n\\cite{zz}\n=======\n\n\\cite{zz}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[english, russian]{babel}\n\\usepackage{apacite}\n=======\n%\\usepackage{lmodern}\n\\usepackage[english, russian]{babel}\n\\usepackage{cite}\n\\bibliographystyle{alpha}\n>>>>>>> REPLACE\n", "id": "texse_multi_503945", "doc": "texse_multi/503945", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/503945", "fix_answer": "accepted", "answer_id": 503948, "answer_score": 2, "fix_source": "answer_doc", "companions": ["d.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Use of \\CS doesn't match its definition.", "changed_files": ["main.tex"], "question_id": 503945, "accepted_answer_id": 503948, "title": "Error Bibtex \"Use of \\@year@ doesn't match its definition. \\cite{}\"", "tags": ["bibliographies", "bibtex"], "score": 1, "created": "2019-08-12", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 9: Use of \\@year@ doesn't match its definition.\n\nProject files:\n- d.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \\usepackage[utf8]{inputenc}\n3: \\usepackage[T1]{fontenc}\n4: \\usepackage[english, russian]{babel}\n5: \\usepackage{apacite}\n6: \\begin{document}\n7: \n8: start\n9: \\cite{zz}\n10: \n11: \n12: \\bibliographystyle{alpha}\n13: \\bibliography{d}\n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n'.\n! Use of \\@year@ doesn't match its definition.\n\\Y@zz ->\\@year@ Z\n zz18\nl.9 \\cite{zz}\n \nIf you say, e.g., `\\def\\a1{...}', then you must always\nput `1' after `\\a', since control sequence names are\nmade up of letters only. The macro here has not been\nfollowed by the required stuff, so I'm ignoring it.\n\n(./main.bbl) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}] (./main.\naux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2979 strings out of 467099\n 49623 string characters out of 5408265\n 470803 words of memory out of 5000000\n 32340 multiletter control sequences out of 15000+600000\n 632080 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 46i,5n,44p,233b,197s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 34191 bytes).\nPDF statistics:\n 24 PDF objects out of 1000 (max. 8388607)\n 14 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/503945", "answer_url": "https://tex.stackexchange.com/a/503948", "question_author": {"user_id": 192803, "name": "Хранитель Рощи", "url": "https://tex.stackexchange.com/users/192803"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 5001, "name": "Mico", "url": "https://tex.stackexchange.com/users/5001"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass[conference]{IEEEtran}\n\\usepackage{filecontents}\n\\begin{document}", "replace": "\\documentclass[conference]{IEEEtran}\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": " The work \\cite{Zhang05}...", "replace": " The work \\cite{Zhnag05}...", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 24, "text": "LaTeX Error: Something's wrong--perhaps a missing \\item.", "file": null, "fileLabel": "main.bbl"}], "log_tail": "o proceed.\nIf that doesn't work, type X to quit.\n\n)\n\n** Conference Paper **\nBefore submitting the final camera ready copy, remember to:\n\n 1. Manually equalize the lengths of two columns on the last page\n of your paper;\n\n 2. Ensure that any PostScript and/or PDF output post-processing\n uses only Type 1 fonts and that every step in the generation\n process uses the appropriate paper size.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/base/8r.enc}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1275 strings out of 467099\n 25392 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30678 multiletter control sequences out of 15000+600000\n 652700 words of font info for 84 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 36i,5n,39p,215b,159s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 19512 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 24: LaTeX Error: Something's wrong--perhaps a missing \\item.\n\nProject files:\n- main.tex\n- references.bib\n\nOther project files (edit them with ):\n\n`references.bib` (full file, line-numbered):\n```\n1: @IEEEtranBSTCTL{IEEEexample:BSTcontrol,\n2: CTLdash_repeated_names = \"no\",\n3: }\n4: \n5: @article{Zhang05,\n6: author = \"Author1 and Author2\",\n7: title = \"{The title}\",\n8: booktitle = {ACM},\n9: year = {2005},\n10: volume = {3},\n11: issue = {2},\n12: pages = {363-387},\n13: }\n14: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[conference]{IEEEtran}\n2: \\begin{document}\n3: \\section{Related Works}\n4: The work \\cite{Zhnag05}...\n5: \\bibliographystyle{IEEEtran}\n6: \\bibliography{references}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\no proceed.\nIf that doesn't work, type X to quit.\n\n)\n\n** Conference Paper **\nBefore submitting the final camera ready copy, remember to:\n\n 1. Manually equalize the lengths of two columns on the last page\n of your paper;\n\n 2. Ensure that any PostScript and/or PDF output post-processing\n uses only Type 1 fonts and that every step in the generation\n process uses the appropriate paper size.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/base/8r.enc}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1275 strings out of 467099\n 25392 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30678 multiletter control sequences out of 15000+600000\n 652700 words of font info for 84 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 36i,5n,39p,215b,159s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 19512 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n The work \\cite{Zhnag05}...\n=======\n The work \\cite{Zhang05}...\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\documentclass[conference]{IEEEtran}\n\\begin{document}\n=======\n\\documentclass[conference]{IEEEtran}\n\\usepackage{filecontents}\n\\begin{document}\n>>>>>>> REPLACE\n", "id": "texse_multi_201090", "doc": "texse_multi/201090", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/201090", "fix_answer": "accepted", "answer_id": 201091, "answer_score": 11, "fix_source": "answer_doc", "companions": ["references.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Something's wrong--perhaps a missing \\CS.", "changed_files": ["main.tex"], "question_id": 201090, "accepted_answer_id": 201091, "title": "Something's wrong--perhaps a missing \\item", "tags": ["bibtex"], "score": 15, "created": "2014-09-14", "error_message": "LaTeX Error: Something's wrong--perhaps a missing \\item.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 24: LaTeX Error: Something's wrong--perhaps a missing \\item.\n\nProject files:\n- main.tex\n- references.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[conference]{IEEEtran}\n2: \\begin{document}\n3: \\section{Related Works}\n4: The work \\cite{Zhnag05}...\n5: \\bibliographystyle{IEEEtran}\n6: \\bibliography{references}\n7: \\end{document}\n8: \n```\n\nCompile log (tail):\n```\no proceed.\nIf that doesn't work, type X to quit.\n\n)\n\n** Conference Paper **\nBefore submitting the final camera ready copy, remember to:\n\n 1. Manually equalize the lengths of two columns on the last page\n of your paper;\n\n 2. Ensure that any PostScript and/or PDF output post-processing\n uses only Type 1 fonts and that every step in the generation\n process uses the appropriate paper size.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/base/8r.enc}\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1275 strings out of 467099\n 25392 string characters out of 5408265\n 436796 words of memory out of 5000000\n 30678 multiletter control sequences out of 15000+600000\n 652700 words of font info for 84 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 36i,5n,39p,215b,159s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 19512 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/201090", "answer_url": "https://tex.stackexchange.com/a/201091", "question_author": {"user_id": 36294, "name": "mahmood", "url": "https://tex.stackexchange.com/users/36294"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": null, "name": "user11232", "url": null}} {"bib": true, "lane": "project", "file_edits": [{"file": "library.bib", "search": "year = {2006},\nlanguage={english},\nhyphenation={english}", "replace": "year = {2006}", "type": "real"}, {"file": "library.bib", "search": "year = {2001},\nlanguage={russian},\nhyphenation={russian}", "replace": "year = {2001}", "type": "real"}, {"file": "main.tex", "search": "\n\\usepackage{filecontents}\n\\usepackage[utf8]{inputenc}", "replace": "\n\\usepackage[utf8]{inputenc}", "type": "real"}, {"file": "main.tex", "search": "\\usepackage[bibencoding=auto,backend=biber,babel=other]{biblatex}", "replace": "\\usepackage[backend = biber,babel=other]{biblatex}", "type": "real"}, {"file": "main.tex", "search": "\\begin{document}\nThis is a test. \\parencite{Bara2006,Baranov2001}", "replace": "\\begin{document}\n%\\selectlanguage{russian} %if the main document language is Russian the bibliography is compiled without any problem.\nThis is a test. \\parencite{Bara2006,Baranov2001}", "type": "real"}, {"file": "main.tex", "search": "\n\\newpage\n\\printbibliography", "replace": "\n\\printbibliography", "type": "real"}], "reported_file": "main.tex", "fix_files": ["library.bib", "main.tex"], "single_shot_visible": false, "error_lines": [{"line": 15, "text": "LaTeX Error: Command \\CYRN unavailable in encoding OT1.", "file": "main.tex", "fileLabel": null}], "log_tail": " \n \nl.15 \n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11400 strings out of 467099\n 217476 string characters out of 5408265\n 1090589 words of memory out of 5000000\n 40674 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1744s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>\nOutput written on main.pdf (1 page, 37441 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 15: LaTeX Error: Command \\CYRN unavailable in encoding OT1.\n\nProject files:\n- library.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`library.bib` (full file, line-numbered):\n```\n1: @book{Bara2006,\n2: address = {New York},\n3: author = {Bara, Judith},\n4: publisher = {Routledge},\n5: title = {{English Citation entry}},\n6: year = {2006},\n7: language={english},\n8: hyphenation={english}\n9: }\n10: \n11: @book{Baranov2001,\n12: address = {Санкт-Петербугр},\n13: author = {Баранов, Николай А},\n14: title = {{Эволюция взглядов}},\n15: year = {2001},\n16: language={russian},\n17: hyphenation={russian}\n18: }\n19: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[utf8]{inputenc}\n4: \\usepackage[russian,english]{babel}\n5: \n6: \\usepackage[backend = biber,babel=other]{biblatex}\n7: \\usepackage{csquotes}\n8: \\addbibresource{library.bib}\n9: \n10: \\begin{document}\n11: %\\selectlanguage{russian} %if the main document language is Russian the bibliography is compiled without any problem.\n12: This is a test. \\parencite{Bara2006,Baranov2001}\n13: \n14: \\printbibliography\n15: \n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\nl.15 \n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11400 strings out of 467099\n 217476 string characters out of 5408265\n 1090589 words of memory out of 5000000\n 40674 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1744s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>\nOutput written on main.pdf (1 page, 37441 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\printbibliography\n=======\n\n\\newpage\n\\printbibliography\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\begin{document}\n%\\selectlanguage{russian} %if the main document language is Russian the bibliography is compiled without any problem.\nThis is a test. \\parencite{Bara2006,Baranov2001}\n=======\n\\begin{document}\nThis is a test. \\parencite{Bara2006,Baranov2001}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[backend = biber,babel=other]{biblatex}\n=======\n\\usepackage[bibencoding=auto,backend=biber,babel=other]{biblatex}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\usepackage[utf8]{inputenc}\n=======\n\n\\usepackage{filecontents}\n\\usepackage[utf8]{inputenc}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\nyear = {2001}\n=======\nyear = {2001},\nlanguage={russian},\nhyphenation={russian}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\nyear = {2006}\n=======\nyear = {2006},\nlanguage={english},\nhyphenation={english}\n>>>>>>> REPLACE\n", "id": "texse_multi_96469", "doc": "texse_multi/96469", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/96469", "fix_answer": "accepted", "answer_id": 96474, "answer_score": 20, "fix_source": "multi", "companions": ["library.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS unavailable in encoding OTN.", "changed_files": ["library.bib", "main.tex"], "question_id": 96469, "accepted_answer_id": 96474, "title": "Switching languages in bibliography with biblatex", "tags": ["biblatex", "languages"], "score": 29, "created": "2013-02-02", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 15: LaTeX Error: Command \\CYRN unavailable in encoding OT1.\n\nProject files:\n- library.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[utf8]{inputenc}\n4: \\usepackage[russian,english]{babel}\n5: \n6: \\usepackage[backend = biber,babel=other]{biblatex}\n7: \\usepackage{csquotes}\n8: \\addbibresource{library.bib}\n9: \n10: \\begin{document}\n11: %\\selectlanguage{russian} %if the main document language is Russian the bibliography is compiled without any problem.\n12: This is a test. \\parencite{Bara2006,Baranov2001}\n13: \n14: \\printbibliography\n15: \n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\nl.15 \n \nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11400 strings out of 467099\n 217476 string characters out of 5408265\n 1090589 words of memory out of 5000000\n 40674 multiletter control sequences out of 15000+600000\n 628672 words of font info for 43 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1744s stack positions out of 10000i,1000n,20000p,200000b,200000s\n<\n/usr/local/texlive/2026/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>\nOutput written on main.pdf (1 page, 37441 bytes).\nPDF statistics:\n 23 PDF objects out of 1000 (max. 8388607)\n 13 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/96469", "answer_url": "https://tex.stackexchange.com/a/96474", "question_author": {"user_id": 10839, "name": "shkelda", "url": "https://tex.stackexchange.com/users/10839"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 14500, "name": "Paul Gaborit", "url": "https://tex.stackexchange.com/users/14500"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage[numbers]{natbib}", "replace": "\\usepackage[authoryear]{natbib}", "type": "real"}, {"file": "main.tex", "search": "\\bibliographystyle{IEEEtranN}", "replace": "\\bibliographystyle{IEEEtran}", "type": "real"}, {"file": "reference.bib", "search": " title = {A greedy look-ahead heuristic for the vehicle routing problem with time windows},", "replace": " title = {A greedy look-ahead heuristic for the vehicle routing problem with\n time windows},", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "reference.bib"], "single_shot_visible": false, "error_lines": [{"line": 8, "text": "Package natbib Error: Bibliography not compatible with author-year citations.", "file": "main.tex", "fileLabel": null}], "log_tail": "n numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.8 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2325 strings out of 467099\n 41712 string characters out of 5408265\n 455378 words of memory out of 5000000\n 31702 multiletter control sequences out of 15000+600000\n 631489 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,181b,168s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 61137 bytes).\nPDF statistics:\n 29 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Package natbib Error: Bibliography not compatible with author-year citations.\n\nProject files:\n- main.tex\n- reference.bib\n\nOther project files (edit them with ):\n\n`reference.bib` (full file, line-numbered):\n```\n1: @ARTICLE{Ioannou2001,\n2: author = {Ioannou, G and Kritikos, M and Prastacos, G},\n3: title = {A greedy look-ahead heuristic for the vehicle routing problem with time windows},\n4: journal = {J Oper Res Soc},\n5: year = {2001},\n6: volume = {52},\n7: pages = {523--537},\n8: number = {5},\n9: month = apr,\n10: __markedentry = {[duongh:6]},\n11: issn = {0160-5682},\n12: owner = {d},\n13: publisher = {Palgrave Publishers Ltd},\n14: timestamp = {2013.03.29},\n15: url = {http://dx.doi.org/10.1057/palgrave.jors.2601113}\n16: }\n17: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[english]{article}\n2: \\usepackage[T1]{fontenc}\n3: \\usepackage[latin9]{inputenc}\n4: \\usepackage{babel}\n5: \\usepackage[authoryear]{natbib}\n6: \\begin{document}\n7: Text here\n8: \n9: \\citet{Ioannou2001}\n10: \n11: \\bibliographystyle{IEEEtran}\n12: \\bibliography{reference}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nn numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.8 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2325 strings out of 467099\n 41712 string characters out of 5408265\n 455378 words of memory out of 5000000\n 31702 multiletter control sequences out of 15000+600000\n 631489 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,181b,168s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 61137 bytes).\nPDF statistics:\n 29 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n title = {A greedy look-ahead heuristic for the vehicle routing problem with\n time windows},\n=======\n title = {A greedy look-ahead heuristic for the vehicle routing problem with time windows},\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\bibliographystyle{IEEEtran}\n=======\n\\bibliographystyle{IEEEtranN}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage[authoryear]{natbib}\n=======\n\\usepackage[numbers]{natbib}\n>>>>>>> REPLACE\n", "id": "texse_multi_121894", "doc": "texse_multi/121894", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/121894", "fix_answer": "top", "answer_id": 122739, "answer_score": 10, "fix_source": "multi", "companions": ["reference.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package natbib Error: Bibliography not compatible with author-year cit", "changed_files": ["main.tex", "reference.bib"], "question_id": 121894, "accepted_answer_id": null, "title": "Bibliography not compatible with author-year citations", "tags": ["natbib", "ieee-style"], "score": 14, "created": "2013-07-01", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 8: Package natbib Error: Bibliography not compatible with author-year citations.\n\nProject files:\n- main.tex\n- reference.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[english]{article}\n2: \\usepackage[T1]{fontenc}\n3: \\usepackage[latin9]{inputenc}\n4: \\usepackage{babel}\n5: \\usepackage[authoryear]{natbib}\n6: \\begin{document}\n7: Text here\n8: \n9: \\citet{Ioannou2001}\n10: \n11: \\bibliographystyle{IEEEtran}\n12: \\bibliography{reference}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nn numerical citation style.\n\n\nSee the natbib package documentation for explanation.\nType H for immediate help.\n ... \n \nl.8 ...mmand\\NAT@force@numbers{}\\NAT@force@numbers\n \nCheck the bibliography entries for non-compliant syntax,\nor select author-year BibTeX style, e.g. plainnat\n\n)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 2325 strings out of 467099\n 41712 string characters out of 5408265\n 455378 words of memory out of 5000000\n 31702 multiletter control sequences out of 15000+600000\n 631489 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,181b,168s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 61137 bytes).\nPDF statistics:\n 29 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/121894", "answer_url": "https://tex.stackexchange.com/a/122739", "question_author": {"user_id": 33026, "name": "duongthaiha", "url": "https://tex.stackexchange.com/users/33026"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 5239, "name": "Marco Daniel", "url": "https://tex.stackexchange.com/users/5239"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\usepackage[square]{natbib}", "replace": "\n\\usepackage[pagebackref=true,linktocpage]{hyperref}\n\\usepackage[square]{natbib}", "type": "real"}, {"file": "main.tex", "search": "\n\\usepackage[pagebackref=true,linktocpage]{hyperref}\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": "\n%\n\\begin{itemize}", "replace": "\n\\begin{itemize}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 1, "text": "LaTeX Error: Command \\BR@bibitem already defined.", "file": null, "fileLabel": "main.bbl"}, {"line": 13, "text": "Undefined control sequence.", "file": null, "fileLabel": "main.bbl"}, {"line": 13, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}, {"line": 16, "text": "Argument of \\BR@@lbibitem has an extra }.", "file": "main.tex", "fileLabel": null}], "log_tail": "7098C63DA1AE919A18A6A5805CA7BAB;371.\n\n\nPackage rerunfilecheck Warning: File `main.brf' has changed.\n(rerunfilecheck) Rerun to get bibliographical references right.\n\nPackage rerunfilecheck Info: Checksums for `main.brf':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 8176 strings out of 467099\n 127800 string characters out of 5408265\n 552426 words of memory out of 5000000\n 37459 multiletter control sequences out of 15000+600000\n 629483 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,307b,439s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 78356 bytes).\nPDF statistics:\n 60 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 17 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 1: LaTeX Error: Command \\BR@bibitem already defined.\n- main.bbl line 13: Undefined control sequence.\n- line 13: LaTeX Error: Missing \\begin{document}.\n- line 16: Argument of \\BR@@lbibitem has an extra }.\n\nProject files:\n- main.tex\n- testref.bib\n\nOther project files (edit them with ):\n\n`testref.bib` (full file, line-numbered):\n```\n1: @STRING{COMPSUR = {ACM Comput. Surv.}}\n2: \n3: @book{Deshpande:2018aa,\n4: Author = {Deshpande, Amol and Gupta, Amarnath},\n5: Date-Added = {2017-04-12 14:27:29 +0000},\n6: Date-Modified = {2017-04-12 14:28:23 +0000},\n7: Note = {Forthcoming},\n8: Publisher = {ACM Books},\n9: Title = {Principles of Graph Data Management and Analytics},\n10: Year = {2018}}\n11: \n12: @article{McCune:2015,\n13: Author = {McCune, Robert Ryan and Weninger, Tim and Madey, Greg},\n14: Journal = COMPSUR,\n15: Number = {2},\n16: Numpages = {39},\n17: Pages = {25:1--25:39},\n18: Title = {Thinking Like a Vertex: A Survey of Vertex-Centric Frameworks for Large-Scale Distributed Graph Processing},\n19: Url = {http://doi.acm.org/10.1145/2818185},\n20: Volume = {48},\n21: Year = {2015}}\n22: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[pagebackref=true,linktocpage]{hyperref}\n4: \\usepackage[square]{natbib}\n5: \\usepackage{bibentry}\n6: \\nobibliography*\n7: \n8: \\begin{document}\n9: \n10: \\section{Introduction}\n11: \n12: Look ma, inline bibtex entries:\n13: \n14: \\begin{itemize}\n15: \\item \\begin{NoHyper}\\bibentry{McCune:2015}\\end{NoHyper}\n16: \\item \\begin{NoHyper}\\bibentry{Deshpande:2018aa}\\end{NoHyper}\n17: \\end{itemize}\n18: \n19: \\section{And now for something completely different}\n20: Lorem ipsum yada yada,\n21: also see \\citep{McCune:2015},\n22: yada yada, and \\citep{Deshpande:2018aa} too.\n23: \n24: \\bibliographystyle{abbrvnat}\n25: \\bibliography{testref}\n26: \n27: \\end{document}\n28: \n```\n\nCompile log (tail):\n```\n7098C63DA1AE919A18A6A5805CA7BAB;371.\n\n\nPackage rerunfilecheck Warning: File `main.brf' has changed.\n(rerunfilecheck) Rerun to get bibliographical references right.\n\nPackage rerunfilecheck Info: Checksums for `main.brf':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 8176 strings out of 467099\n 127800 string characters out of 5408265\n 552426 words of memory out of 5000000\n 37459 multiletter control sequences out of 15000+600000\n 629483 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,307b,439s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 78356 bytes).\nPDF statistics:\n 60 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 17 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\begin{itemize}\n=======\n\n%\n\\begin{itemize}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\usepackage[pagebackref=true,linktocpage]{hyperref}\n\\begin{document}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\usepackage[pagebackref=true,linktocpage]{hyperref}\n\\usepackage[square]{natbib}\n=======\n\n\\usepackage[square]{natbib}\n>>>>>>> REPLACE\n", "id": "texse_multi_364440", "doc": "texse_multi/364440", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/364440", "fix_answer": "accepted", "answer_id": 364445, "answer_score": 3, "fix_source": "answer_doc", "companions": ["testref.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS already defined.", "changed_files": ["main.tex"], "question_id": 364440, "accepted_answer_id": 364445, "title": "Trouble using hyperref and bibentry packages together", "tags": ["bibtex", "hyperref", "bibentry"], "score": 3, "created": "2017-04-12", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 1: LaTeX Error: Command \\BR@bibitem already defined.\n- main.bbl line 13: Undefined control sequence.\n- line 13: LaTeX Error: Missing \\begin{document}.\n- line 16: Argument of \\BR@@lbibitem has an extra }.\n\nProject files:\n- main.tex\n- testref.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[pagebackref=true,linktocpage]{hyperref}\n4: \\usepackage[square]{natbib}\n5: \\usepackage{bibentry}\n6: \\nobibliography*\n7: \n8: \\begin{document}\n9: \n10: \\section{Introduction}\n11: \n12: Look ma, inline bibtex entries:\n13: \n14: \\begin{itemize}\n15: \\item \\begin{NoHyper}\\bibentry{McCune:2015}\\end{NoHyper}\n16: \\item \\begin{NoHyper}\\bibentry{Deshpande:2018aa}\\end{NoHyper}\n17: \\end{itemize}\n18: \n19: \\section{And now for something completely different}\n20: Lorem ipsum yada yada,\n21: also see \\citep{McCune:2015},\n22: yada yada, and \\citep{Deshpande:2018aa} too.\n23: \n24: \\bibliographystyle{abbrvnat}\n25: \\bibliography{testref}\n26: \n27: \\end{document}\n28: \n```\n\nCompile log (tail):\n```\n7098C63DA1AE919A18A6A5805CA7BAB;371.\n\n\nPackage rerunfilecheck Warning: File `main.brf' has changed.\n(rerunfilecheck) Rerun to get bibliographical references right.\n\nPackage rerunfilecheck Info: Checksums for `main.brf':\n(rerunfilecheck) Before: \n(rerunfilecheck) After: D41D8CD98F00B204E9800998ECF8427E;0.\n ) \nHere is how much of TeX's memory you used:\n 8176 strings out of 467099\n 127800 string characters out of 5408265\n 552426 words of memory out of 5000000\n 37459 multiletter control sequences out of 15000+600000\n 629483 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 89i,5n,93p,307b,439s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 78356 bytes).\nPDF statistics:\n 60 PDF objects out of 1000 (max. 8388607)\n 44 compressed objects within 1 object stream\n 7 named destinations out of 1000 (max. 500000)\n 17 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/364440", "answer_url": "https://tex.stackexchange.com/a/364445", "question_author": {"user_id": 8801, "name": "ozsu", "url": "https://tex.stackexchange.com/users/8801"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 36296, "name": "samcarter_is_at_topanswers.xyz", "url": "https://tex.stackexchange.com/users/36296"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\usepackage{filecontents}\n\\usepackage[what=this]{mypackage}", "replace": "\n\\usepackage[what=this]{mypackage}", "type": "real"}, {"file": "main.tex", "search": "\\begin{document}\n\\mytest\n\\blindtext", "replace": "\\begin{document}\n\\blindtext", "type": "real"}, {"file": "mypackage.sty", "search": "\\def\\mytest{%\n \\IfStrEqCase{\\mypackage@what}{%", "replace": "\\IfStrEqCase{what}{%", "type": "real"}, {"file": "mypackage.sty", "search": "\n }\n\\newcommand{\\dothis}{The magic word is ``this''}", "replace": "\n\\newcommand{\\dothis}{The magic word is ``this''}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "mypackage.sty"], "single_shot_visible": true, "error_lines": [{"line": 14, "text": "LaTeX Error: Missing \\begin{document}.", "file": "main.tex", "fileLabel": null}], "log_tail": "X Font Info: Checking defaults for OT1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1337 strings out of 467099\n 23263 string characters out of 5408265\n 437796 words of memory out of 5000000\n 30719 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,227b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18093 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 14: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- main.tex\n- mypackage.sty\n\nOther project files (edit them with ):\n\n`mypackage.sty` (full file, line-numbered):\n```\n1: \\NeedsTeXFormat{LaTeX2e}\n2: \\ProvidesPackage{mypackage}\n3: \n4: \\RequirePackage{kvoptions}\n5: \\RequirePackage{xstring}\n6: \n7: \\DeclareStringOption{what}\n8: \\ProcessKeyvalOptions*\n9: \n10: \\def\\mytest{%\n11: \\IfStrEqCase{\\mypackage@what}{%\n12: {this}{\\dothis}%\n13: {that}{\\dothat}%\n14: }%\n15: [Other]%\n16: \n17: }\n18: \\newcommand{\\dothis}{The magic word is ``this''}\n19: \\newcommand{\\dothat}{The magic word is ``that''}\n20: \n21: \\endinput\n22: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[what=this]{mypackage}\n4: \n5: \\usepackage{blindtext}\n6: \n7: \\begin{document}\n8: \\blindtext\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\nX Font Info: Checking defaults for OT1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1337 strings out of 467099\n 23263 string characters out of 5408265\n 437796 words of memory out of 5000000\n 30719 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,227b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18093 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\newcommand{\\dothis}{The magic word is ``this''}\n=======\n\n }\n\\newcommand{\\dothis}{The magic word is ``this''}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\IfStrEqCase{what}{%\n=======\n\\def\\mytest{%\n \\IfStrEqCase{\\mypackage@what}{%\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\begin{document}\n\\blindtext\n=======\n\\begin{document}\n\\mytest\n\\blindtext\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\usepackage[what=this]{mypackage}\n=======\n\n\\usepackage{filecontents}\n\\usepackage[what=this]{mypackage}\n>>>>>>> REPLACE\n", "id": "texse_multi_496574", "doc": "texse_multi/496574", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/496574", "fix_answer": "accepted", "answer_id": 496579, "answer_score": 3, "fix_source": "multi", "companions": ["mypackage.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Missing \\CS{X}.", "changed_files": ["main.tex", "mypackage.sty"], "question_id": 496574, "accepted_answer_id": 496579, "title": "Using key option to package that uses string cases", "tags": ["xstring", "package-options", "kvoptions"], "score": 2, "created": "2019-06-20", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 14: LaTeX Error: Missing \\begin{document}.\n\nProject files:\n- main.tex\n- mypackage.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[what=this]{mypackage}\n4: \n5: \\usepackage{blindtext}\n6: \n7: \\begin{document}\n8: \\blindtext\n9: \\end{document}\n10: \n```\n\nCompile log (tail):\n```\nX Font Info: Checking defaults for OT1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 7.\nLaTeX Font Info: ... okay on input line 7.\n [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./main\n.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 1337 strings out of 467099\n 23263 string characters out of 5408265\n 437796 words of memory out of 5000000\n 30719 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,5n,65p,227b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 18093 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/496574", "answer_url": "https://tex.stackexchange.com/a/496579", "question_author": {"user_id": 13492, "name": "murray", "url": "https://tex.stackexchange.com/users/13492"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 134574, "name": "Phelype Oleinik", "url": "https://tex.stackexchange.com/users/134574"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass{article}\n\\usepackage{filecontents}", "replace": "% document.tex\n\\documentclass{minimal}", "type": "real"}, {"file": "main.tex", "search": "\n\\makeglossaries\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}, {"file": "myglossary.sty", "search": "\\newif\\if@myglossary@computer\n\\DeclareOption{computer}{\\@myglossary@computertrue} %\n\\ProcessOptions\n\\if@myglossary@computer", "replace": "\\DeclareOption{computer}{\\option@computer} %% Execute \\option@computer if option computer\n\n\\newcommand\\option@computer{%", "type": "real"}, {"file": "myglossary.sty", "search": "\\fi", "replace": "}\n\n\\ProcessOptions", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "myglossary.sty"], "single_shot_visible": false, "error_lines": [{"line": 21, "text": "Package glossaries Error: Glossary entry `w3c' has already been defined.", "file": "main.tex", "fileLabel": null}], "log_tail": "X Font Info: Checking defaults for OT1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./m\nain.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8540 strings out of 467099\n 189781 string characters out of 5408265\n 673522 words of memory out of 5000000\n 37866 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 92i,5n,93p,2473b,111s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14666 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 21: Package glossaries Error: Glossary entry `w3c' has already been defined.\n\nProject files:\n- main.tex\n- myglossary.sty\n\nOther project files (edit them with ):\n\n`myglossary.sty` (full file, line-numbered):\n```\n1: % myglossary.sty\n2: % acronyms and definitions\n3: \n4: \\NeedsTeXFormat{LaTeX2e}\n5: \\ProvidesPackage{myglossary}\n6: \n7: \\RequirePackage{glossaries}\n8: \n9: \\newif\\if@myglossary@computer\n10: \\DeclareOption{computer}{\\@myglossary@computertrue} %\n11: \\ProcessOptions\n12: \\if@myglossary@computer\n13: \\newacronym{w3c}{W3C}{World Wide Web Consortium}\n14: \n15: \\newglossaryentry{css}{%\n16: name={CSS},%\n17: description={Style sheet language used for describing the presentation semantics (the look and formatting) of a document written in a markup language.},%\n18: plural={CSS}}\n19: \\fi\n20: \n21: \\endinput\n22: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % document.tex\n2: \\documentclass{minimal}\n3: \n4: \\usepackage[computer]{myglossary}% note the option \"computer\"\n5: \n6: \\begin{document}\n7: \n8: \\gls{w3c}\n9: \\gls{css}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nX Font Info: Checking defaults for OT1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./m\nain.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8540 strings out of 467099\n 189781 string characters out of 5408265\n 673522 words of memory out of 5000000\n 37866 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 92i,5n,93p,2473b,111s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14666 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n}\n\n\\ProcessOptions\n=======\n\\fi\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\DeclareOption{computer}{\\option@computer} %% Execute \\option@computer if option computer\n\n\\newcommand\\option@computer{%\n=======\n\\newif\\if@myglossary@computer\n\\DeclareOption{computer}{\\@myglossary@computertrue} %\n\\ProcessOptions\n\\if@myglossary@computer\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\makeglossaries\n\\begin{document}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n% document.tex\n\\documentclass{minimal}\n=======\n\\documentclass{article}\n\\usepackage{filecontents}\n>>>>>>> REPLACE\n", "id": "texse_multi_88933", "doc": "texse_multi/88933", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/88933", "fix_answer": "accepted", "answer_id": 88936, "answer_score": 2, "fix_source": "multi", "companions": ["myglossary.sty"], "n_files": 2, "engine": "pdflatex", "error_category": "Package glossaries Error: Glossary entry 'X' has already been defined.", "changed_files": ["main.tex", "myglossary.sty"], "question_id": 88933, "accepted_answer_id": 88936, "title": "LaTeX system-wide glossary database as custom package", "tags": ["glossaries", "package-writing", "package-options"], "score": 3, "created": "2013-01-02", "error_message": "Package glossaries Error: Glossary entry `w3c' has already been defined.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 21: Package glossaries Error: Glossary entry `w3c' has already been defined.\n\nProject files:\n- main.tex\n- myglossary.sty\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: % document.tex\n2: \\documentclass{minimal}\n3: \n4: \\usepackage[computer]{myglossary}% note the option \"computer\"\n5: \n6: \\begin{document}\n7: \n8: \\gls{w3c}\n9: \\gls{css}\n10: \n11: \\end{document}\n12: \n```\n\nCompile log (tail):\n```\nX Font Info: Checking defaults for OT1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 6.\nLaTeX Font Info: ... okay on input line 6.\n [1{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./m\nain.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n ) \nHere is how much of TeX's memory you used:\n 8540 strings out of 467099\n 189781 string characters out of 5408265\n 673522 words of memory out of 5000000\n 37866 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 92i,5n,93p,2473b,111s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 14666 bytes).\nPDF statistics:\n 13 PDF objects out of 1000 (max. 8388607)\n 7 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/88933", "answer_url": "https://tex.stackexchange.com/a/88936", "question_author": {"user_id": 23212, "name": "dieze", "url": "https://tex.stackexchange.com/users/23212"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 5049, "name": "cgnieder", "url": "https://tex.stackexchange.com/users/5049"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\usepackage{navigator}\n\\let\\navletcs\\letcs\n\\let\\letcs\\relax\n\\usepackage{biblatex}", "replace": "\\usepackage{biblatex}\n\\usepackage{navigator}", "type": "real"}, {"file": "main.tex", "search": "\n\\begingroup\n\\let\\letcs\\navletcs\n\\embeddedfile{Test}[Test.txt]{latextest.bib}", "replace": "\n% Just need some file here\n\\embeddedfile{Test}[Test.txt]{latextest.bib}", "type": "real"}, {"file": "main.tex", "search": "\n\\endgroup\n\\begin{document}", "replace": "\n\\begin{document}", "type": "real"}, {"file": "main.tex", "search": "\n\\begingroup\n\\let\\letcs\\navletcs\n\\finishpdffile", "replace": "\n\\finishpdffile", "type": "real"}, {"file": "main.tex", "search": "\n\\endgroup\n\\end{document}", "replace": "\n\\end{document}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 11, "text": "Undefined control sequence.", "file": "main.tex", "fileLabel": null}, {"line": 15, "text": "Extra }, or forgotten \\endgroup.", "file": "main.tex", "fileLabel": null}], "log_tail": "ecover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n\nLaTeX Warning: Citation 'ctan' on page 1 undefined on input line 15.\n\n\nLaTeX Warning: Empty bibliography on input line 19.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 9439 strings out of 467099\n 187296 string characters out of 5408265\n 1026628 words of memory out of 5000000\n 38749 multiletter control sequences out of 15000+600000\n 628329 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1150s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 27538 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 29 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Undefined control sequence.\n- line 15: Extra }, or forgotten \\endgroup.\n\nProject files:\n- latextest.bib\n- main.tex\n\nOther project files (edit them with ):\n\n`latextest.bib` (full file, line-numbered):\n```\n1: @online{ctan,\n2: title = \"The Comprehensive TeX Archive Network\",\n3: url = \"https://ctan.org/\"\n4: }\n5: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,letterpaper,titlepage]{article}\n2: \n3: \\usepackage{biblatex}\n4: \\usepackage{navigator}\n5: \n6: \\addbibresource{latextest.bib}\n7: \n8: % Just need some file here\n9: \\embeddedfile{Test}[Test.txt]{latextest.bib}\n10: \n11: \\begin{document}\n12: \n13: Test\n14: \n15: Test \\cite{ctan}\n16: \n17: Test\n18: \n19: \\printbibliography\n20: \n21: \\finishpdffile\n22: \n23: \\end{document}\n24: \n```\n\nCompile log (tail):\n```\necover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n\nLaTeX Warning: Citation 'ctan' on page 1 undefined on input line 15.\n\n\nLaTeX Warning: Empty bibliography on input line 19.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 9439 strings out of 467099\n 187296 string characters out of 5408265\n 1026628 words of memory out of 5000000\n 38749 multiletter control sequences out of 15000+600000\n 628329 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1150s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 27538 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 29 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\n\\end{document}\n=======\n\n\\endgroup\n\\end{document}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\finishpdffile\n=======\n\n\\begingroup\n\\let\\letcs\\navletcs\n\\finishpdffile\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\begin{document}\n=======\n\n\\endgroup\n\\begin{document}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n% Just need some file here\n\\embeddedfile{Test}[Test.txt]{latextest.bib}\n=======\n\n\\begingroup\n\\let\\letcs\\navletcs\n\\embeddedfile{Test}[Test.txt]{latextest.bib}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage{biblatex}\n\\usepackage{navigator}\n=======\n\\usepackage{navigator}\n\\let\\navletcs\\letcs\n\\let\\letcs\\relax\n\\usepackage{biblatex}\n>>>>>>> REPLACE\n", "id": "texse_multi_511621", "doc": "texse_multi/511621", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/511621", "fix_answer": "accepted", "answer_id": 511650, "answer_score": 5, "fix_source": "answer_doc", "companions": ["latextest.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Undefined control sequence.", "changed_files": ["main.tex"], "question_id": 511621, "accepted_answer_id": 511650, "title": "Possible conflict between BibLaTeX and navigator packages", "tags": ["biblatex", "errors", "biber"], "score": 2, "created": "2019-10-09", "error_message": "Undefined control sequence.", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Undefined control sequence.\n- line 15: Extra }, or forgotten \\endgroup.\n\nProject files:\n- latextest.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[11pt,letterpaper,titlepage]{article}\n2: \n3: \\usepackage{biblatex}\n4: \\usepackage{navigator}\n5: \n6: \\addbibresource{latextest.bib}\n7: \n8: % Just need some file here\n9: \\embeddedfile{Test}[Test.txt]{latextest.bib}\n10: \n11: \\begin{document}\n12: \n13: Test\n14: \n15: Test \\cite{ctan}\n16: \n17: Test\n18: \n19: \\printbibliography\n20: \n21: \\finishpdffile\n22: \n23: \\end{document}\n24: \n```\n\nCompile log (tail):\n```\necover is to insert both the forgotten and the\ndeleted material, e.g., by typing `I$}'.\n\n\nLaTeX Warning: Citation 'ctan' on page 1 undefined on input line 15.\n\n\nLaTeX Warning: Empty bibliography on input line 19.\n\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please (re)run Biber on the file:\n(biblatex) main\n(biblatex) and rerun LaTeX afterwards.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 9439 strings out of 467099\n 187296 string characters out of 5408265\n 1026628 words of memory out of 5000000\n 38749 multiletter control sequences out of 15000+600000\n 628329 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,1150s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nOutput written on main.pdf (1 page, 27538 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 29 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/511621", "answer_url": "https://tex.stackexchange.com/a/511650", "question_author": {"user_id": 199023, "name": "nkarstens", "url": "https://tex.stackexchange.com/users/199023"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 35864, "name": "moewe", "url": "https://tex.stackexchange.com/users/35864"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass[11pt,francais]{article}\n\\usepackage[T1]{fontenc}\n\\usepackage{selinput}\n\\SelectInputMappings{\n agrave={à},\n eacute={é}\n}\n\\usepackage{babel}\n\\usepackage[babel]{csquotes}\n\\usepackage[backend=biber]{biblatex}\n\\usepackage{filecontents}\n\\addbibresource{\\jobname.bib}", "replace": "\\documentclass{article}\n\n\\usepackage[latin1]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage[francais]{babel}", "type": "real"}, {"file": "main.tex", "search": "J'insère le premier \\cite{uml}.\n\\printbibliography", "replace": "J'insère le premier \\cite{Uml}.\n\n\\bibliography{bibli} % mon fichier de base de données s'appelle bibli.bib", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 4463, "text": "Package babel Error: Unknown option 'francais'.", "file": "main.tex", "fileLabel": null}], "log_tail": " 8.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Citation `Uml' on page 1 undefined on input line 10.\n\nNo file main.bbl.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1998 strings out of 467099\n 37676 string characters out of 5408265\n 455072 words of memory out of 5000000\n 31387 multiletter control sequences out of 15000+600000\n 629260 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,145b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 25755 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 4463: Package babel Error: Unknown option 'francais'.\n\nProject files:\n- bibli.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[latin1]{inputenc}\n4: \\usepackage[T1]{fontenc}\n5: \\usepackage[francais]{babel}\n6: \n7: \n8: \\begin{document}\n9: \n10: J'insère le premier \\cite{Uml}.\n11: \n12: \\bibliography{bibli} % mon fichier de base de données s'appelle bibli.bib\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n8.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Citation `Uml' on page 1 undefined on input line 10.\n\nNo file main.bbl.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1998 strings out of 467099\n 37676 string characters out of 5408265\n 455072 words of memory out of 5000000\n 31387 multiletter control sequences out of 15000+600000\n 629260 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,145b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 25755 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\nJ'insère le premier \\cite{Uml}.\n\n\\bibliography{bibli} % mon fichier de base de données s'appelle bibli.bib\n=======\nJ'insère le premier \\cite{uml}.\n\\printbibliography\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\documentclass{article}\n\n\\usepackage[latin1]{inputenc}\n\\usepackage[T1]{fontenc}\n\\usepackage[francais]{babel}\n=======\n\\documentclass[11pt,francais]{article}\n\\usepackage[T1]{fontenc}\n\\usepackage{selinput}\n\\SelectInputMappings{\n agrave={à},\n eacute={é}\n}\n\\usepackage{babel}\n\\usepackage[babel]{csquotes}\n\\usepackage[backend=biber]{biblatex}\n\\usepackage{filecontents}\n\\addbibresource{\\jobname.bib}\n>>>>>>> REPLACE\n", "id": "texse_multi_160575", "doc": "texse_multi/160575", "mutation": "real", "source": "texse", "license": "CC-BY-SA-3.0", "url": "https://tex.stackexchange.com/q/160575", "fix_answer": "accepted", "answer_id": 160578, "answer_score": 2, "fix_source": "answer_doc", "companions": ["bibli.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "Package babel Error: Unknown option 'X'.", "changed_files": ["main.tex"], "question_id": 160575, "accepted_answer_id": 160578, "title": "How to use BibTex correctly", "tags": ["bibtex"], "score": 2, "created": "2014-02-15", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 4463: Package babel Error: Unknown option 'francais'.\n\nProject files:\n- bibli.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage[latin1]{inputenc}\n4: \\usepackage[T1]{fontenc}\n5: \\usepackage[francais]{babel}\n6: \n7: \n8: \\begin{document}\n9: \n10: J'insère le premier \\cite{Uml}.\n11: \n12: \\bibliography{bibli} % mon fichier de base de données s'appelle bibli.bib\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n8.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 8.\nLaTeX Font Info: ... okay on input line 8.\nPackage babel Info: Main language set to 'nil'.\n\n\nLaTeX Warning: Citation `Uml' on page 1 undefined on input line 10.\n\nNo file main.bbl.\n[1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n ) \nHere is how much of TeX's memory you used:\n 1998 strings out of 467099\n 37676 string characters out of 5408265\n 455072 words of memory out of 5000000\n 31387 multiletter control sequences out of 15000+600000\n 629260 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 38i,5n,47p,145b,124s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 25755 bytes).\nPDF statistics:\n 19 PDF objects out of 1000 (max. 8388607)\n 11 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/160575", "answer_url": "https://tex.stackexchange.com/a/160578", "question_author": {"user_id": 46158, "name": "dgs", "url": "https://tex.stackexchange.com/users/46158"}, "answer_license": "CC-BY-SA-3.0", "answer_author": {"user_id": 1063, "name": "Thorsten Donig", "url": "https://tex.stackexchange.com/users/1063"}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\n\\usepackage{catchfile}\n\\usepackage{tikz}", "replace": "\n\\usepackage{tikz}", "type": "real"}, {"file": "main.tex", "search": "\\CatchFileEdef{\\rotateangle}{rotateanglenum.txt}{}", "replace": "\\pgfmathsetmacro{\\rotateangle}{{\\input{rotateanglenum.txt}}}", "type": "real"}, {"file": "main.tex", "search": " \\pgfmathsetmacro{\\Angle}{180}\n \\pgfmathsetmacro{\\Sum}{\\Angle+\\rotateangle}% better not use \\sum\n \\draw[blue, thin] (0,0) -- (\\Sum:\\radius);\n \\draw[red, thick] (0,0) circle[radius=\\radius cm];", "replace": " \\pgfmathsetmacro{\\angle}{180}\n \\pgfmathsetmacro{\\sum}{\\angle+\\rotateangle}\n \\draw[blue, thin] (0,0) -- (\\sum:\\radius);\n\n \\draw[red, thick] (0,0) circle (\\radius cm);", "type": "real"}, {"file": "rotateanglenum.txt", "search": "10", "replace": "\\begin{filecontents}{rotateanglenum.txt}\n-10\n\\end{filecontents}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex", "rotateanglenum.txt"], "single_shot_visible": false, "error_lines": [{"line": 6, "text": "Argument of \\@iinput has an extra }.", "file": "main.tex", "fileLabel": null}], "log_tail": "\\par' that\nI've just inserted will cause me to report a runaway\nargument that might be the root of the problem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\@iinput was complete.\n \n \\par \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n! I can't find file `}'.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n(Press Enter to retry, or Control-D to exit)\nPlease type another input file name\n! Emergency stop.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n*** (job aborted, file error in nonstop mode)\n\n \nHere is how much of TeX's memory you used:\n 12416 strings out of 467099\n 266191 string characters out of 5408265\n 638414 words of memory out of 5000000\n 41575 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,0n,121p,391b,90s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: Argument of \\@iinput has an extra }.\n\nProject files:\n- main.tex\n- rotateanglenum.txt\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[tikz]{standalone}\n2: \n3: \\usepackage{tikz}\n4: \\usetikzlibrary{arrows}\n5: \n6: \\pgfmathsetmacro{\\rotateangle}{{\\input{rotateanglenum.txt}}}\n7: \n8: \\begin{document}\n9: \\begin{tikzpicture}\n10: \\pgfmathsetmacro{\\radius}{3}\n11: \\pgfmathsetmacro{\\angle}{180}\n12: \\pgfmathsetmacro{\\sum}{\\angle+\\rotateangle}\n13: \\draw[blue, thin] (0,0) -- (\\sum:\\radius);\n14: \n15: \\draw[red, thick] (0,0) circle (\\radius cm);\n16: \\end{tikzpicture}\n17: \\end{document}\n18: \n```\n\nCompile log (tail):\n```\n\\par' that\nI've just inserted will cause me to report a runaway\nargument that might be the root of the problem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\@iinput was complete.\n \n \\par \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n! I can't find file `}'.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n(Press Enter to retry, or Control-D to exit)\nPlease type another input file name\n! Emergency stop.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n*** (job aborted, file error in nonstop mode)\n\n \nHere is how much of TeX's memory you used:\n 12416 strings out of 467099\n 266191 string characters out of 5408265\n 638414 words of memory out of 5000000\n 41575 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,0n,121p,391b,90s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "target": "\n<<<<<<< SEARCH\n\\begin{filecontents}{rotateanglenum.txt}\n-10\n\\end{filecontents}\n=======\n10\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n \\pgfmathsetmacro{\\angle}{180}\n \\pgfmathsetmacro{\\sum}{\\angle+\\rotateangle}\n \\draw[blue, thin] (0,0) -- (\\sum:\\radius);\n\n \\draw[red, thick] (0,0) circle (\\radius cm);\n=======\n \\pgfmathsetmacro{\\Angle}{180}\n \\pgfmathsetmacro{\\Sum}{\\Angle+\\rotateangle}% better not use \\sum\n \\draw[blue, thin] (0,0) -- (\\Sum:\\radius);\n \\draw[red, thick] (0,0) circle[radius=\\radius cm];\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\pgfmathsetmacro{\\rotateangle}{{\\input{rotateanglenum.txt}}}\n=======\n\\CatchFileEdef{\\rotateangle}{rotateanglenum.txt}{}\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\n\\usepackage{tikz}\n=======\n\n\\usepackage{catchfile}\n\\usepackage{tikz}\n>>>>>>> REPLACE\n", "id": "texse_multi_525826", "doc": "texse_multi/525826", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/525826", "fix_answer": "accepted", "answer_id": 525828, "answer_score": 1, "fix_source": "multi", "companions": ["rotateanglenum.txt"], "n_files": 1, "engine": "pdflatex", "error_category": "Argument of \\CS has an extra }.", "changed_files": ["main.tex", "rotateanglenum.txt"], "question_id": 525826, "accepted_answer_id": 525828, "title": "How can I read the input to the pgfmathsetmacro command", "tags": ["input", "pgfmath"], "score": 1, "created": "2020-01-27", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: Argument of \\@iinput has an extra }.\n\nProject files:\n- main.tex\n- rotateanglenum.txt\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[tikz]{standalone}\n2: \n3: \\usepackage{tikz}\n4: \\usetikzlibrary{arrows}\n5: \n6: \\pgfmathsetmacro{\\rotateangle}{{\\input{rotateanglenum.txt}}}\n7: \n8: \\begin{document}\n9: \\begin{tikzpicture}\n10: \\pgfmathsetmacro{\\radius}{3}\n11: \\pgfmathsetmacro{\\angle}{180}\n12: \\pgfmathsetmacro{\\sum}{\\angle+\\rotateangle}\n13: \\draw[blue, thin] (0,0) -- (\\sum:\\radius);\n14: \n15: \\draw[red, thick] (0,0) circle (\\radius cm);\n16: \\end{tikzpicture}\n17: \\end{document}\n18: \n```\n\nCompile log (tail):\n```\n\\par' that\nI've just inserted will cause me to report a runaway\nargument that might be the root of the problem. But if\nyour `}' was spurious, just type `2' and it will go away.\n\nRunaway argument?\n! Paragraph ended before \\@iinput was complete.\n \n \\par \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n! I can't find file `}'.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n(Press Enter to retry, or Control-D to exit)\nPlease type another input file name\n! Emergency stop.\n \n \\futurelet \nl.6 ...\\rotateangle}{{\\input{rotateanglenum.txt}}}\n \n*** (job aborted, file error in nonstop mode)\n\n \nHere is how much of TeX's memory you used:\n 12416 strings out of 467099\n 266191 string characters out of 5408265\n 638414 words of memory out of 5000000\n 41575 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 117i,0n,121p,391b,90s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "question_url": "https://tex.stackexchange.com/q/525826", "answer_url": "https://tex.stackexchange.com/a/525828", "question_author": {"user_id": 139580, "name": "dEmigOd", "url": "https://tex.stackexchange.com/users/139580"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": null, "name": "user194703", "url": null}} {"bib": false, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\csname @input\\endcsname{forEachInput.tex}", "replace": "\\input{forEachInput.tex}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 11, "text": "Paragraph ended before \\pgffor@next was complete.", "file": "main.tex", "fileLabel": null}], "log_tail": " line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n (./forEachInput.tex)\nRunaway argument?\n\\@expl@@@filehook@file@pop@assign@@nnnn {}{forEachInput.tex}{}{forEac\\ETC.\n! Paragraph ended before \\pgffor@next was complete.\n \n \\par \nl.11 \n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 1 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 5690 strings out of 467099\n 118726 string characters out of 5408265\n 492143 words of memory out of 5000000\n 35024 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,1n,55p,359b,56s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Paragraph ended before \\pgffor@next was complete.\n\nProject files:\n- forEachInput.tex\n- main.tex\n\nOther project files (edit them with ):\n\n`forEachInput.tex` (full file, line-numbered):\n```\n1: \\foreach \\fruit in {apple,cherry,banana}\n2: \n```\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage{pgffor}\n4: \n5: \\begin{document}\n6: \n7: \\input{forEachInput.tex}\n8: {\n9: test \\fruit\n10: }\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nline 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n (./forEachInput.tex)\nRunaway argument?\n\\@expl@@@filehook@file@pop@assign@@nnnn {}{forEachInput.tex}{}{forEac\\ETC.\n! Paragraph ended before \\pgffor@next was complete.\n \n \\par \nl.11 \n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 1 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 5690 strings out of 467099\n 118726 string characters out of 5408265\n 492143 words of memory out of 5000000\n 35024 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,1n,55p,359b,56s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\input{forEachInput.tex}\n=======\n\\csname @input\\endcsname{forEachInput.tex}\n>>>>>>> REPLACE\n", "id": "texse_multi_692644", "doc": "texse_multi/692644", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/692644", "fix_answer": "accepted", "answer_id": 692654, "answer_score": 4, "fix_source": "answer_doc", "companions": ["forEachInput.tex"], "n_files": 2, "engine": "pdflatex", "error_category": "Paragraph ended before \\CS was complete.", "changed_files": ["main.tex"], "question_id": 692644, "accepted_answer_id": 692654, "title": "pgffor with foreach inputted from another file does not work anymore with MiKTeX 23.4", "tags": ["tikz-pgf", "miktex", "input", "miktex2.9", "pgffor"], "score": 3, "created": "2023-08-03", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 11: Paragraph ended before \\pgffor@next was complete.\n\nProject files:\n- forEachInput.tex\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage{pgffor}\n4: \n5: \\begin{document}\n6: \n7: \\input{forEachInput.tex}\n8: {\n9: test \\fruit\n10: }\n11: \n12: \\end{document}\n13: \n```\n\nCompile log (tail):\n```\nline 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\nLaTeX Font Info: Checking defaults for U/cmr/m/n on input line 5.\nLaTeX Font Info: ... okay on input line 5.\n (./forEachInput.tex)\nRunaway argument?\n\\@expl@@@filehook@file@pop@assign@@nnnn {}{forEachInput.tex}{}{forEac\\ETC.\n! Paragraph ended before \\pgffor@next was complete.\n \n \\par \nl.11 \n \nI suspect you've forgotten a `}', causing me to apply this\ncontrol sequence to too much text. How can we recover?\nMy plan is to forget the whole thing and hope for the best.\n\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n )\n(\\end occurred inside a group at level 1)\n\n### semi simple group (level 1) entered at line 1 (\\begingroup)\n### bottom level \nHere is how much of TeX's memory you used:\n 5690 strings out of 467099\n 118726 string characters out of 5408265\n 492143 words of memory out of 5000000\n 35024 multiletter control sequences out of 15000+600000\n 627721 words of font info for 40 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 57i,1n,55p,359b,56s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\nNo pages of output.\nPDF statistics:\n 0 PDF objects out of 1000 (max. 8388607)\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/692644", "answer_url": "https://tex.stackexchange.com/a/692654", "question_author": {"user_id": 142619, "name": "Pollo", "url": "https://tex.stackexchange.com/users/142619"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 277964, "name": "cabohah", "url": "https://tex.stackexchange.com/users/277964"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\addbibresource{\\jobname.bib}", "replace": "\\addbibresource{biblio.bib}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 6, "text": "File ended while scanning use of \\field.", "file": "main.tex", "fileLabel": null}, {"line": 13, "text": "Missing \\endcsname inserted.", "file": "main.tex", "fileLabel": null}], "log_tail": " \\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n! Undefined control sequence.\n \\blx@bbl@data \n \nl.13 \n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! Missing \\endcsname inserted.\n \n \\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n)\n! Incomplete \\iffalse; all text was ignored after line 13.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 8730 strings out of 467099\n 171515 string characters out of 5408265\n 1006212 words of memory out of 5000000\n 38058 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,66p,693b,1226s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: File ended while scanning use of \\field.\n- line 13: Missing \\endcsname inserted.\n\nProject files:\n- biblio.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage{biblatex}\n4: \\addbibresource{biblio.bib}\n5: \n6: \\begin{document}\n7: \n8: \\cite{pain}\n9: \n10: \\cite{edos}\n11: \n12: \\printbibliography\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n\\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n! Undefined control sequence.\n \\blx@bbl@data \n \nl.13 \n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! Missing \\endcsname inserted.\n \n \\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n)\n! Incomplete \\iffalse; all text was ignored after line 13.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 8730 strings out of 467099\n 171515 string characters out of 5408265\n 1006212 words of memory out of 5000000\n 38058 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,66p,693b,1226s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "target": "\n<<<<<<< SEARCH\n\\addbibresource{biblio.bib}\n=======\n\\addbibresource{\\jobname.bib}\n>>>>>>> REPLACE\n", "id": "texse_multi_749844", "doc": "texse_multi/749844", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/749844", "fix_answer": "top", "answer_id": 752749, "answer_score": 2, "fix_source": "answer_doc", "companions": ["biblio.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "File ended while scanning use of \\CS.", "changed_files": ["main.tex"], "question_id": 749844, "accepted_answer_id": null, "title": "biblatex not working with special characters in URL in howpublished field", "tags": ["biblatex", "bibliographies", "overleaf"], "score": 0, "created": "2025-08-17", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 6: File ended while scanning use of \\field.\n- line 13: Missing \\endcsname inserted.\n\nProject files:\n- biblio.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass{article}\n2: \n3: \\usepackage{biblatex}\n4: \\addbibresource{biblio.bib}\n5: \n6: \\begin{document}\n7: \n8: \\cite{pain}\n9: \n10: \\cite{edos}\n11: \n12: \\printbibliography\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\n\\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n! Undefined control sequence.\n \\blx@bbl@data \n \nl.13 \n \nThe control sequence at the end of the top line\nof your error message was never \\def'ed. If you have\nmisspelled it (e.g., `\\hobx'), type `I' and the correct\nspelling (e.g., `I\\hbox'). Otherwise just continue,\nand I'll forget about whatever was undefined.\n\n! Missing \\endcsname inserted.\n \n \\let \nl.13 \n \nThe control sequence marked should\nnot appear between \\csname and \\endcsname.\n\n)\n! Incomplete \\iffalse; all text was ignored after line 13.\n \n \\fi \n<*> main.tex\n \nThe file ended while I was skipping conditional text.\nThis kind of error happens when you say `\\if...' and forget\nthe matching `\\fi'. I've inserted a `\\fi'; this might work.\n\n! Emergency stop.\n<*> main.tex\n \n*** (job aborted, no legal \\end found)\n\n \nHere is how much of TeX's memory you used:\n 8730 strings out of 467099\n 171515 string characters out of 5408265\n 1006212 words of memory out of 5000000\n 38058 multiletter control sequences out of 15000+600000\n 628326 words of font info for 42 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,1n,66p,693b,1226s stack positions out of 10000i,1000n,20000p,200000b,200000s\n! ==> Fatal error occurred, no output PDF file produced!\n```", "question_url": "https://tex.stackexchange.com/q/749844", "answer_url": "https://tex.stackexchange.com/a/752749", "question_author": {"user_id": 411209, "name": "mlg", "url": "https://tex.stackexchange.com/users/411209"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 35864, "name": "moewe", "url": "https://tex.stackexchange.com/users/35864"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "%\\usepackage{cmap}\n\\usepackage[T2A,T1]{fontenc}\n%\\usepackage[utf8]{inputenc}\n\\usepackage[main=english,russian]{babel}\n\\usepackage{csquotes}\n\\usepackage[style=ieee,autolang=other*]{biblatex}\n\\usepackage{hyperref}\n\\addbibresource{\\jobname.bib}", "replace": "\\usepackage{cmap}\n\\usepackage[T2A]{fontenc}\n\\usepackage[utf8]{inputenc}\n\\usepackage[english,russian]{babel}", "type": "real"}, {"file": "main.tex", "search": "\\printbibliography", "replace": "\\bibliographystyle{IEEEtran}\n\\bibliography{ref.bib}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": false, "error_lines": [{"line": 25, "text": "LaTeX Error: Invalid UTF-8 byte sequence (�.).", "file": null, "fileLabel": "main.bbl"}], "log_tail": " as \\usepackage [latin1]{inputenc}\nin the document preamble.\nAlternatively, save the file in UTF-8 using your editor or another tool\n\n) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2779 strings out of 467099\n 50356 string characters out of 5408265\n 457855 words of memory out of 5000000\n 32134 multiletter control sequences out of 15000+600000\n 632135 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,220b,204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 41151 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 5 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 25: LaTeX Error: Invalid UTF-8 byte sequence (�.).\n\nProject files:\n- main.tex\n- ref.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \n3: \\usepackage{cmap}\n4: \\usepackage[T2A]{fontenc}\n5: \\usepackage[utf8]{inputenc}\n6: \\usepackage[english,russian]{babel}\n7: \n8: \\begin{document}\n9: \n10: This is from \\cite{cubic_forms}\n11: \\bibliographystyle{IEEEtran}\n12: \\bibliography{ref.bib}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nas \\usepackage [latin1]{inputenc}\nin the document preamble.\nAlternatively, save the file in UTF-8 using your editor or another tool\n\n) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2779 strings out of 467099\n 50356 string characters out of 5408265\n 457855 words of memory out of 5000000\n 32134 multiletter control sequences out of 15000+600000\n 632135 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,220b,204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 41151 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 5 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\bibliographystyle{IEEEtran}\n\\bibliography{ref.bib}\n=======\n\\printbibliography\n>>>>>>> REPLACE\n\n\n\n<<<<<<< SEARCH\n\\usepackage{cmap}\n\\usepackage[T2A]{fontenc}\n\\usepackage[utf8]{inputenc}\n\\usepackage[english,russian]{babel}\n=======\n%\\usepackage{cmap}\n\\usepackage[T2A,T1]{fontenc}\n%\\usepackage[utf8]{inputenc}\n\\usepackage[main=english,russian]{babel}\n\\usepackage{csquotes}\n\\usepackage[style=ieee,autolang=other*]{biblatex}\n\\usepackage{hyperref}\n\\addbibresource{\\jobname.bib}\n>>>>>>> REPLACE\n", "id": "texse_multi_701263", "doc": "texse_multi/701263", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/701263", "fix_answer": "accepted", "answer_id": 701276, "answer_score": 5, "fix_source": "answer_doc", "companions": ["ref.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Invalid UTF-N byte sequence (�.).", "changed_files": ["main.tex"], "question_id": 701263, "accepted_answer_id": 701276, "title": "Cant make bibliography with cyrillic: Invalid UTF-8 byte sequence", "tags": ["bibtex", "texshop", "input-encodings", "bibdesk", "installing-fonts"], "score": 5, "created": "2023-11-14", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- main.bbl line 25: LaTeX Error: Invalid UTF-8 byte sequence (�.).\n\nProject files:\n- main.tex\n- ref.bib\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[12pt]{article}\n2: \n3: \\usepackage{cmap}\n4: \\usepackage[T2A]{fontenc}\n5: \\usepackage[utf8]{inputenc}\n6: \\usepackage[english,russian]{babel}\n7: \n8: \\begin{document}\n9: \n10: This is from \\cite{cubic_forms}\n11: \\bibliographystyle{IEEEtran}\n12: \\bibliography{ref.bib}\n13: \n14: \\end{document}\n15: \n```\n\nCompile log (tail):\n```\nas \\usepackage [latin1]{inputenc}\nin the document preamble.\nAlternatively, save the file in UTF-8 using your editor or another tool\n\n) [1\n\n{/usr/local/texlive/2026/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/loc\nal/texlive/2026/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t2a.enc}]\n(./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nLaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.\n\n ) \nHere is how much of TeX's memory you used:\n 2779 strings out of 467099\n 50356 string characters out of 5408265\n 457855 words of memory out of 5000000\n 32134 multiletter control sequences out of 15000+600000\n 632135 words of font info for 46 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 42i,5n,51p,220b,204s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (1 page, 41151 bytes).\nPDF statistics:\n 26 PDF objects out of 1000 (max. 8388607)\n 17 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 5 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/701263", "answer_url": "https://tex.stackexchange.com/a/701276", "question_author": {"user_id": 308045, "name": "greg", "url": "https://tex.stackexchange.com/users/308045"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 4427, "name": "egreg", "url": "https://tex.stackexchange.com/users/4427"}} {"bib": true, "lane": "project", "file_edits": [{"file": "main.tex", "search": "\\documentclass{report}\n\\usepackage{libertinus}\n\\usepackage[russian, english]{babel}\n\\usepackage{csquotes}\n\\usepackage{biblatex}\n\\addbibresource{\\jobname.bib}", "replace": "\\documentclass[]{report}\n\n\\usepackage[T1,T2A]{fontenc}\n\\usepackage[russian, english]{babel}\n\\usepackage[]{biblatex}\n\\addbibresource{bibliography.bib}", "type": "real"}], "reported_file": "main.tex", "fix_files": ["main.tex"], "single_shot_visible": true, "error_lines": [{"line": 16, "text": "LaTeX Error: Command \\CYRS unavailable in encoding T1.", "file": "main.tex", "fileLabel": null}], "log_tail": "tion.\nType H for immediate help.\n ... \n \nl.16 \\end\n {document}\nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[2\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11102 strings out of 467099\n 214003 string characters out of 5408265\n 1072348 words of memory out of 5000000\n 40380 multiletter control sequences out of 15000+600000\n 631513 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,2034s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 46063 bytes).\nPDF statistics:\n 31 PDF objects out of 1000 (max. 8388607)\n 19 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n\n", "prompt": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 16: LaTeX Error: Command \\CYRS unavailable in encoding T1.\n\nProject files:\n- bibliography.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[]{report}\n2: \n3: \\usepackage[T1,T2A]{fontenc}\n4: \\usepackage[russian, english]{babel}\n5: \\usepackage[]{biblatex}\n6: \\addbibresource{bibliography.bib}\n7: \n8: \\begin{document}\n9: \\cite{griffiths}\n10: \n11: \\selectlanguage{russian}\n12: \\cite{kalashnikov}\n13: \n14: \\selectlanguage{english}\n15: \\printbibliography\n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\ntion.\nType H for immediate help.\n ... \n \nl.16 \\end\n {document}\nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[2\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11102 strings out of 467099\n 214003 string characters out of 5408265\n 1072348 words of memory out of 5000000\n 40380 multiletter control sequences out of 15000+600000\n 631513 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,2034s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 46063 bytes).\nPDF statistics:\n 31 PDF objects out of 1000 (max. 8388607)\n 19 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "target": "\n<<<<<<< SEARCH\n\\documentclass[]{report}\n\n\\usepackage[T1,T2A]{fontenc}\n\\usepackage[russian, english]{babel}\n\\usepackage[]{biblatex}\n\\addbibresource{bibliography.bib}\n=======\n\\documentclass{report}\n\\usepackage{libertinus}\n\\usepackage[russian, english]{babel}\n\\usepackage{csquotes}\n\\usepackage{biblatex}\n\\addbibresource{\\jobname.bib}\n>>>>>>> REPLACE\n", "id": "texse_multi_748390", "doc": "texse_multi/748390", "mutation": "real", "source": "texse", "license": "CC-BY-SA-4.0", "url": "https://tex.stackexchange.com/q/748390", "fix_answer": "accepted", "answer_id": 748405, "answer_score": 5, "fix_source": "answer_doc", "companions": ["bibliography.bib"], "n_files": 2, "engine": "pdflatex", "error_category": "LaTeX Error: Command \\CS unavailable in encoding TN.", "changed_files": ["main.tex"], "question_id": 748390, "accepted_answer_id": 748405, "title": "Multilingual entries in biblatex throw errors after using \\selectlanguage{} from babel", "tags": ["biblatex", "babel", "languages", "compilation-error", "russian"], "score": 5, "created": "2025-07-22", "error_message": "", "prompt_v1": "The LaTeX file `main.tex` fails to compile. Apply the smallest edit that fixes the compile errors and keep my content intact.\nErrors:\n- line 16: LaTeX Error: Command \\CYRS unavailable in encoding T1.\n\nProject files:\n- bibliography.bib\n- main.tex\n\nCurrent content of `main.tex` (full file, line-numbered):\n```\n1: \\documentclass[]{report}\n2: \n3: \\usepackage[T1,T2A]{fontenc}\n4: \\usepackage[russian, english]{babel}\n5: \\usepackage[]{biblatex}\n6: \\addbibresource{bibliography.bib}\n7: \n8: \\begin{document}\n9: \\cite{griffiths}\n10: \n11: \\selectlanguage{russian}\n12: \\cite{kalashnikov}\n13: \n14: \\selectlanguage{english}\n15: \\printbibliography\n16: \\end{document}\n17: \n```\n\nCompile log (tail):\n```\ntion.\nType H for immediate help.\n ... \n \nl.16 \\end\n {document}\nYour command was ignored.\nType I to replace it with another command,\nor to continue without it.\n\n[2\n\n] (./main.aux)\n ***********\nLaTeX2e <2026-06-01>\nL3 programming layer <2026-08-10>\n ***********\n\n\nLaTeX Warning: There were undefined references.\n\n\nPackage biblatex Warning: Please rerun LaTeX.\n\nPackage logreq Info: Writing requests to 'main.run.xml'.\n\\openout1 = `main.run.xml'.\n\n ) \nHere is how much of TeX's memory you used:\n 11102 strings out of 467099\n 214003 string characters out of 5408265\n 1072348 words of memory out of 5000000\n 40380 multiletter control sequences out of 15000+600000\n 631513 words of font info for 45 fonts, out of 8000000 for 9000\n 1141 hyphenation exceptions out of 8191\n 62i,5n,66p,693b,2034s stack positions out of 10000i,1000n,20000p,200000b,200000s\n\n\nOutput written on main.pdf (2 pages, 46063 bytes).\nPDF statistics:\n 31 PDF objects out of 1000 (max. 8388607)\n 19 compressed objects within 1 object stream\n 0 named destinations out of 1000 (max. 500000)\n 1 words of extra memory for PDF output out of 10000 (max. 10000000)\n```", "question_url": "https://tex.stackexchange.com/q/748390", "answer_url": "https://tex.stackexchange.com/a/748405", "question_author": {"user_id": 407780, "name": "user407780", "url": "https://tex.stackexchange.com/users/407780"}, "answer_license": "CC-BY-SA-4.0", "answer_author": {"user_id": 277964, "name": "cabohah", "url": "https://tex.stackexchange.com/users/277964"}}