"""Stage 1e: the per-layer MLP write-vectors at the read position, as the eleven path descriptors of Eusebi et al. (2026). Decoders: a forward hook on every decoder layer's MLP captures its output at the last prompt position (the answer position; left padding), for the same prompts in the same split order as 11_extract_decoder_states.py, which is checked by recomputing the prediction. Encoders: a hook on every layer's feed-forward output projection captures it at the [CLS] position, in the prediction parquet's row order, as 07_extract_layer_states.py does. Only the descriptors are written (data/features//mlppath_.npz); the write-vectors themselves are not kept. python extraction/scripts/12_extract_mlp_path.py --config extraction/configs/qwen05_mmlu.yaml """ from __future__ import annotations import argparse import importlib.util import sys import time from pathlib import Path import numpy as np import pandas as pd import torch ROOT = Path(__file__).resolve().parents[1] REPO = ROOT.parent sys.path.insert(0, str(ROOT)); sys.path.insert(0, str(REPO)) from src.utils import load_config, seed_everything, device_from_cfg # noqa: E402 from cct_reproduce.grids import is_decoder # noqa: E402 from cct_reproduce.mlp_path import write_features # noqa: E402 def _load_11(): spec = importlib.util.spec_from_file_location("dec11", ROOT / "scripts" / "11_extract_decoder_states.py") mod = importlib.util.module_from_spec(spec); spec.loader.exec_module(mod) return mod class _Capture: """Forward hooks that keep the module output at one position.""" def __init__(self, modules, position): self.buf, self.position = [None] * len(modules), position self.handles = [m.register_forward_hook(self._hook(i)) for i, m in enumerate(modules)] def _hook(self, i): def f(_m, _in, out): o = out[0] if isinstance(out, tuple) else out self.buf[i] = o[:, self.position, :].detach().float().cpu() return f def stack(self): return torch.stack(self.buf, dim=1).numpy() # (B, L, D) def close(self): for h in self.handles: h.remove() @torch.no_grad() def decoder(cfg, name, a): d11 = _load_11() df = d11.load_questions(cfg["data"]) df["split"] = d11.partition(df, cfg["data"].get("fractions", [0.5, 0.2, 0.3]), int(cfg["data"].get("split_seed", 0))) mcfg = cfg["model"] from transformers import AutoModelForCausalLM, AutoTokenizer tok = AutoTokenizer.from_pretrained(mcfg["pretrained_path"]) tok.padding_side = "left"; tok.truncation_side = "left" if tok.pad_token is None: tok.pad_token = tok.eos_token dtype = {"bfloat16": torch.bfloat16, "float16": torch.float16, "float32": torch.float32}[mcfg.get("dtype", "bfloat16")] model = AutoModelForCausalLM.from_pretrained(mcfg["pretrained_path"], torch_dtype=dtype) model = model.to(cfg["inference"].get("device", "cuda")).eval() n_cls = int(df["choices"].apply(len).max()) letter_ids = d11.letter_token_ids(tok, n_cls) template = mcfg.get("prompt", "The following is a multiple choice question about " "{subject}.\n\n{question}\n{options}\n\nAnswer with the letter only.") df["prompt"] = [d11.build_prompt(tok, r, template, mcfg.get("system", None)) for _, r in df.iterrows()] df = df.set_index("idx") cap = _Capture([layer.mlp for layer in model.model.layers], position=-1) bs, max_length = int(cfg["inference"].get("batch_size", 8)), int(mcfg.get("max_length", 2048)) for split in ("train", "validation", "test"): pdf = pd.read_parquet(REPO / "data" / "features" / name / f"predictions_{split}.parquet") sub = df.loc[pdf["qid"].values] prompts = sub["prompt"].tolist() N = len(prompts) lengths = np.array([len(tok.encode(p, add_special_tokens=False)) for p in prompts]) order = np.argsort(-lengths) M = None; pred = np.zeros(N, np.int64); t0 = time.time() for b in range(0, N, bs): rows = order[b:b + bs] enc = tok([prompts[i] for i in rows], return_tensors="pt", padding=True, truncation=True, max_length=max_length) enc = {k: v.to(model.device) for k, v in enc.items()} out = model(**enc) m = cap.stack() if M is None: M = np.zeros((N, m.shape[1], m.shape[2]), np.float16) M[rows] = m.astype(np.float16) last = out.logits[:, -1, :].float() lt = torch.stack([last[:, ids].max(1).values for ids in letter_ids], 1) pred[rows] = lt.argmax(1).cpu().numpy() if (b // bs) % 100 == 0: print(f" {b + len(rows):6d}/{N} {time.time() - t0:.0f}s", flush=True) agree = float((pred == pdf["pred"].values).mean()) print(f" [{split}] n={N} M={M.shape} prediction agreement with the cache {agree:.4f} " f"{time.time() - t0:.0f}s", flush=True) if agree < 0.98: raise RuntimeError(f"{name} {split}: prompts or order differ from the cached run") write_features(name, split, M, pdf["idx"].values, REPO / "data") cap.close() @torch.no_grad() def encoder(cfg, name, a): from src.load_data import load_splits from src.load_model import load_classification_model, move from src.extract_attention import _build_dataloader device = device_from_cfg(cfg) splits_data = load_splits(cfg) model, tokenizer = load_classification_model( cfg["model"]["pretrained_path"], num_labels=cfg["model"].get("num_labels"), base_tokenizer=cfg["model"].get("base_tokenizer"), do_lower_case=cfg["model"].get("do_lower_case"), is_peft=cfg["model"].get("is_peft", False), base_model=cfg["model"].get("base_model")) model = move(model, device).eval() layers = model.base_model.encoder.layer cap = _Capture([layer.output.dense for layer in layers], position=0) for split in ("train", "validation", "test"): p = REPO / "data" / "features" / name / f"predictions_{split}.parquet" pdf = pd.read_parquet(p) idxs = pdf["idx"].tolist() raw = splits_data[split].reset_index(drop=True) raw_m = raw.loc[raw["idx"].isin(idxs)].set_index("idx").loc[idxs].reset_index() loader = _build_dataloader(raw_m, tokenizer, cfg["data"]["text_col"], cfg["data"]["label_col"], cfg["model"]["max_length"], cfg["inference"]["batch_size"]) Ms, preds = [], [] t0 = time.time() for batch in loader: o = model(input_ids=batch["input_ids"].to(device), attention_mask=batch["attention_mask"].to(device)) Ms.append(cap.stack().astype(np.float16)); preds.append(o.logits.argmax(-1).cpu().numpy()) M = np.concatenate(Ms); pred = np.concatenate(preds) agree = float((pred == pdf["pred"].values).mean()) print(f" [{split}] n={len(M)} M={M.shape} prediction agreement {agree:.4f} " f"{time.time() - t0:.0f}s", flush=True) if agree < 0.98: raise RuntimeError(f"{name} {split}: row order differs from the cached predictions") write_features(name, split, M, np.asarray(idxs), REPO / "data") cap.close() def main(): ap = argparse.ArgumentParser(description=__doc__.split("\n")[0]) ap.add_argument("--config", required=True) ap.add_argument("--force", action="store_true") a = ap.parse_args() cfg = load_config(a.config) name = cfg["run_name"] if (REPO / "data" / "features" / name / "mlppath_test.npz").exists() and not a.force: print(f"[{name}] mlppath features already present"); return seed_everything(int(cfg.get("seed", 0))) (decoder if is_decoder(name) else encoder)(cfg, name, a) print(f"[{name}] DONE") if __name__ == "__main__": main()