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diff --git a/ENCSR112AKE/cherimoya.fold_3.fit.json b/ENCSR112AKE/cherimoya.fold_3.fit.json new file mode 100644 index 0000000000000000000000000000000000000000..51df776fabfd73121074ad176703deaa5e6ad7b5 --- /dev/null +++ b/ENCSR112AKE/cherimoya.fold_3.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_3", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr7", "chr8", "chr9", "chr11", "chr12", "chr13", "chr15", "chr16", "chr17", "chr19", "chrX", "chrY"], "validation_chroms": ["chr6", "chr21"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_3.bed", "valid_peaks.fold_3.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_3.bed", "valid_nonpeaks.fold_3.bed"], "signals": ["ENCFF515MUZ.bigWig"], "controls": null, 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0000000000000000000000000000000000000000..f3b3cb49a44122c1a9a4e5807f9cc6159a82b72a --- /dev/null +++ b/ENCSR120LVW/cherimoya.fold_0.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_0", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_0.bed", "valid_nonpeaks.fold_0.bed"], "signals": ["ENCFF931ELW.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false} \ No newline at end of file diff --git a/ENCSR120LVW/cherimoya.fold_1.fit.json b/ENCSR120LVW/cherimoya.fold_1.fit.json new file mode 100644 index 0000000000000000000000000000000000000000..06dbdd283dfd34b512b5afc4deb0eb218390a121 --- /dev/null +++ b/ENCSR120LVW/cherimoya.fold_1.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_1", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr3", "chr4", "chr5", "chr6", "chr7", "chr10", "chr11", "chr13", "chr14", "chr15", "chr18", "chr19", "chr20", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr12", "chr17"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_1.bed", "valid_peaks.fold_1.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_1.bed", "valid_nonpeaks.fold_1.bed"], "signals": 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0.30235111713409424 0.7134815 0.7887666821479797 True +3 10848 30.266345024108887 0.6908040046691895 278.8290710449219 0.8884491920471191 401.6236877441406 0.3121170103549957 0.7201551 0.655698299407959 True +4 13560 30.228760719299316 0.6864092350006104 279.85272216796875 0.7361522316932678 399.987548828125 0.315662145614624 0.72533894 0.7025815844535828 True +5 16272 30.228825092315674 0.7010395526885986 268.9433898925781 0.5463743209838867 398.93505859375 0.31774941086769104 0.72665435 0.7535305023193359 True +6 18984 30.235617637634277 0.7732281684875488 283.28076171875 0.6713123321533203 398.0558776855469 0.32069119811058044 0.72798336 0.8247647285461426 True +7 21696 30.175315856933594 0.7041046619415283 279.70977783203125 0.8000228404998779 396.7720031738281 0.325074166059494 0.7326663 0.7983207106590271 True +8 24408 30.24748134613037 0.7071468830108643 229.97708129882812 0.6029147505760193 395.7445373535156 0.3279387950897217 0.7339377 0.7475104331970215 True +9 27120 30.238122940063477 0.6957254409790039 315.2177734375 0.4794790744781494 395.55706787109375 0.3280350863933563 0.73503244 0.7393230199813843 True +10 29832 30.189711809158325 0.7045109272003174 330.60345458984375 0.7551295757293701 393.3213195800781 0.3347392976284027 0.74240357 0.7151137590408325 True +11 32544 30.205693006515503 0.7044625282287598 297.0609436035156 0.39082422852516174 392.951904296875 0.3363480269908905 0.7459065 0.6999514698982239 True +12 35256 30.243273973464966 2.5731916427612305 297.40911865234375 0.37538620829582214 392.3382568359375 0.33713123202323914 0.7500836 0.617811918258667 True +13 37968 30.343921899795532 0.7243711948394775 292.8996276855469 0.3295455276966095 391.335205078125 0.3392554819583893 0.7565983 0.5472642779350281 True +14 40680 30.20932936668396 0.7740435600280762 333.89093017578125 0.4354182481765747 390.62432861328125 0.3414071798324585 0.76662904 0.5056089758872986 True +15 43392 30.17207932472229 0.6937332153320312 290.21673583984375 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0.6047885417938232 364.79254150390625 0.3117756247520447 0.7111099 0.8572203516960144 True +7 22912 31.85131311416626 0.5299160480499268 323.17620849609375 0.8603869080543518 364.17840576171875 0.31289735436439514 0.7144927 0.786191463470459 True +8 25776 31.84895133972168 0.5302815437316895 284.7569580078125 0.4933675527572632 363.89874267578125 0.3148351013660431 0.7162115 0.7499701380729675 True +9 28640 31.85457181930542 0.5326414108276367 305.3245849609375 0.5478363037109375 362.75213623046875 0.31778624653816223 0.72032833 0.7073937654495239 True +10 31504 31.842350959777832 0.5301468372344971 309.3594055175781 0.4212735891342163 361.3518371582031 0.3228836953639984 0.72276896 0.6375508904457092 True +11 34368 31.84903836250305 0.5287058353424072 321.971923828125 0.5640414357185364 361.0419616699219 0.32325470447540283 0.7280749 0.5685358047485352 True +12 37232 31.908599853515625 0.5275309085845947 259.0143127441406 0.6130304336547852 360.6827087402344 0.32429710030555725 0.7334439 0.5103317499160767 True +13 40096 31.877238273620605 0.527658224105835 243.39447021484375 0.3271716833114624 359.794921875 0.327286958694458 0.73938084 0.47575220465660095 True +14 42960 31.843886852264404 0.526383638381958 299.13946533203125 0.27355635166168213 359.204345703125 0.3273177146911621 0.7472691 0.45125311613082886 True +15 45824 31.947396516799927 0.5453872680664062 330.66656494140625 0.33931905031204224 358.6808776855469 0.3294510841369629 0.75108343 0.42158153653144836 True +16 48688 31.91007089614868 0.7674922943115234 283.44158935546875 0.35639655590057373 358.2969055175781 0.33084434270858765 0.7566393 0.38705679774284363 True +17 51552 31.958173036575317 0.5317814350128174 265.23504638671875 0.35781317949295044 357.81494140625 0.3317301273345947 0.7603916 0.3660578429698944 True +18 54416 32.18202877044678 6.398216962814331 303.7761535644531 0.3772158622741699 357.8468322753906 0.3323501646518707 0.7602805 0.3593118488788605 False +19 57280 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1.6637797355651855 247.56930541992188 0.8894846439361572 254.4421844482422 0.24620236456394196 0.6496475 0.65789395570755 True +10 30195 30.20086169242859 0.4838063716888428 217.16973876953125 0.5473260879516602 253.761474609375 0.24909403920173645 0.6577051 0.6075021624565125 True +11 32940 30.192344903945923 0.490720272064209 211.5447998046875 0.5852019786834717 253.51744079589844 0.24971693754196167 0.66441375 0.5571487545967102 True +12 35685 30.171823024749756 0.49486589431762695 199.5316925048828 0.3974596858024597 252.9024658203125 0.252493292093277 0.6761861 0.5093580484390259 True +13 38430 30.48664116859436 14.890493154525757 208.22674560546875 0.46867871284484863 252.3783721923828 0.2544785141944885 0.6860732 0.4773982763290405 True +14 41175 30.24334692955017 0.49757981300354004 161.46141052246094 0.34411802887916565 252.09263610839844 0.25615447759628296 0.6962576 0.4544171988964081 True +15 43920 30.174399375915527 0.49507808685302734 208.45989990234375 0.5775957703590393 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0.37684011459350586 230.18211364746094 0.2217632234096527 0.86753833 0.3228176236152649 True +14 28800 21.24854040145874 0.39842915534973145 171.48370361328125 0.3577132523059845 229.4786834716797 0.22322936356067657 0.8723276 0.3081081509590149 True +15 30720 21.2510085105896 0.3981163501739502 166.9790802001953 0.2660730481147766 229.5965118408203 0.22280703485012054 0.8732922 0.3008480668067932 True +16 32640 21.249715089797974 9.226313829421997 187.71160888671875 0.3284757137298584 229.21946716308594 0.22381466627120972 0.8747164 0.2981809973716736 True +17 34560 21.130842447280884 0.390150785446167 215.37289428710938 0.2718795835971832 228.99143981933594 0.22414609789848328 0.87464976 0.29699262976646423 False +18 36480 20.799554109573364 0.4672396183013916 203.44613647460938 0.3402208685874939 229.36680603027344 0.22314821183681488 0.87490743 0.30039504170417786 True +19 38400 20.803650617599487 0.39799070358276367 189.65550231933594 0.1859792023897171 229.66030883789062 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Iteration Training Time Validation Time Training MNLL Training Count MSE Validation MNLL Validation Profile Pearson Validation Count Pearson Validation Count MSE Saved? +0 1963 26.552072286605835 3.499779462814331 242.55694580078125 0.5711899995803833 257.46221923828125 0.12823379039764404 0.644775 6.195499420166016 True +1 3926 21.748915195465088 0.5269999504089355 238.9255828857422 0.47807252407073975 237.62318420410156 0.17829479277133942 0.76482946 2.514059543609619 True +2 5889 21.723921060562134 0.5953037738800049 172.88262939453125 0.5837439298629761 228.7758331298828 0.19053581357002258 0.7852633 1.1789624691009521 True +3 7852 21.747187614440918 0.4217529296875 202.07003784179688 0.7120784521102905 225.7853240966797 0.1940283477306366 0.80093414 0.7320590019226074 True +4 9815 21.75060224533081 9.099393367767334 139.3654022216797 0.3561573922634125 224.62611389160156 0.19577805697917938 0.8025572 0.6984072327613831 True +5 11778 22.33727192878723 0.42444276809692383 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218.92385864257812 0.21094070374965668 0.85183084 0.35385966300964355 True +12 25519 21.75666093826294 0.3872966766357422 172.60595703125 0.21844956278800964 218.37045288085938 0.21203520894050598 0.8545469 0.33600911498069763 True +13 27482 22.01640033721924 9.8336181640625 205.33554077148438 0.3476635217666626 217.8282012939453 0.2134360373020172 0.85862744 0.32023945450782776 True +14 29445 21.772642135620117 0.4034383296966553 166.12939453125 0.29561617970466614 217.63316345214844 0.21370913088321686 0.86366624 0.304898202419281 True +15 31408 21.753207206726074 0.41370248794555664 152.88429260253906 0.5793926119804382 217.85826110839844 0.21311692893505096 0.8653681 0.2971593737602234 True +16 33371 21.745615243911743 0.39978981018066406 210.2450714111328 0.19196286797523499 217.40203857421875 0.21438655257225037 0.8672531 0.2915721535682678 True +17 35334 21.808030605316162 0.3969151973724365 174.01132202148438 0.22342713177204132 217.59649658203125 0.21389275789260864 0.8674998 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"validation_chroms": [ + "chr8", + "chr20" + ], + "verbose": true +} \ No newline at end of file diff --git a/ENCSR163GMC/cherimoya.fold_0.fit.json b/ENCSR163GMC/cherimoya.fold_0.fit.json new file mode 100644 index 0000000000000000000000000000000000000000..339b8f281970c13b1383860d51cd640cd76d279c --- /dev/null +++ b/ENCSR163GMC/cherimoya.fold_0.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_0", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], 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Iteration Training Time Validation Time Training MNLL Training Count MSE Validation MNLL Validation Profile Pearson Validation Count Pearson Validation Count MSE Saved? +0 1038 16.457667350769043 2.8818233013153076 214.32861328125 0.5506161451339722 534.3370971679688 0.3928009867668152 0.5472047 21.436805725097656 True +1 2076 11.436155319213867 0.30614399909973145 244.89556884765625 0.6064386367797852 422.50360107421875 0.4887472689151764 0.66869026 10.017987251281738 True +2 3114 11.696971893310547 20.26023244857788 244.93492126464844 0.5100964307785034 377.28662109375 0.5568958520889282 0.7208012 4.550839424133301 True +3 4152 11.439782619476318 0.3102998733520508 221.80108642578125 0.41862303018569946 344.25665283203125 0.6124176979064941 0.7533485 1.88114595413208 True +4 5190 11.383644342422485 0.30086708068847656 259.2013854980469 0.4144187867641449 331.9837646484375 0.6310392022132874 0.7748164 1.0030370950698853 True +5 6228 11.408976554870605 0.7135679721832275 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0.6522400975227356 0.8228261 0.3602491021156311 True +12 13494 11.416933298110962 0.4529285430908203 240.3006591796875 0.457669198513031 318.6159973144531 0.6535448431968689 0.82758474 0.3494877219200134 True +13 14532 11.39754056930542 0.2905905246734619 230.597900390625 0.3814650774002075 318.1878356933594 0.654251217842102 0.83275306 0.3403465151786804 True +14 15570 11.418175220489502 0.2895512580871582 244.5856475830078 0.2555909752845764 318.1221618652344 0.6545167565345764 0.8368458 0.33861982822418213 True +15 16608 11.426463603973389 0.28928709030151367 240.68417358398438 0.2455729991197586 318.1353454589844 0.6542795896530151 0.83853966 0.34066763520240784 True +16 17646 11.434781551361084 0.2937932014465332 240.31736755371094 0.2289227843284607 318.46380615234375 0.6533562541007996 0.839971 0.34441205859184265 True +17 18684 11.426966905593872 0.2955629825592041 181.8754119873047 0.13461627066135406 319.1601257324219 0.6519158482551575 0.83793724 0.35432785749435425 False 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newline at end of file diff --git a/ENCSR513EVP/cherimoya.fold_4.fit.json b/ENCSR513EVP/cherimoya.fold_4.fit.json new file mode 100644 index 0000000000000000000000000000000000000000..3f54e676b419134a982cd1afbc303b2d3d1db711 --- /dev/null +++ b/ENCSR513EVP/cherimoya.fold_4.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", "chr18"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_4.bed", "valid_peaks.fold_4.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_4.bed", "valid_nonpeaks.fold_4.bed"], "signals": ["ENCFF927NMO.bigWig"], 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0.8913047 0.1159394159913063 True +12 36543 30.68931245803833 0.6056845188140869 247.29763793945312 0.2162412852048874 307.6131591796875 0.3042176067829132 0.8938538 0.11558109521865845 True +13 39354 30.638821601867676 0.5927610397338867 276.3226013183594 0.08357327431440353 307.5976257324219 0.3040376603603363 0.897593 0.11041542887687683 True +14 42165 30.898125648498535 0.618666410446167 266.67523193359375 0.14790046215057373 306.98211669921875 0.3057425916194916 0.89946765 0.10908334702253342 True +15 44976 30.689146518707275 0.5911307334899902 265.21923828125 0.11746138334274292 307.03082275390625 0.30579832196235657 0.900979 0.10700760036706924 True +16 47787 30.713825225830078 0.5983633995056152 258.742431640625 0.21587225794792175 306.7217102050781 0.3061693608760834 0.9009363 0.1050521731376648 False +17 50598 30.717439889907837 0.6036083698272705 274.4981689453125 0.1252034306526184 306.78240966796875 0.3063626289367676 0.9029926 0.10275880247354507 True +18 53409 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12.839869976043701 0.23744726181030273 214.5214080810547 0.20287099480628967 215.89566040039062 0.4996711015701294 0.8618095 0.15288111567497253 True +13 16534 12.876561403274536 0.2406017780303955 181.59780883789062 0.20496292412281036 215.76730346679688 0.5001480579376221 0.8658736 0.1473490297794342 True +14 17715 12.887454986572266 0.23429298400878906 188.14907836914062 0.15243381261825562 215.7068328857422 0.500255823135376 0.866243 0.14314770698547363 True +15 18896 12.912534952163696 0.23429203033447266 161.87313842773438 0.16464608907699585 215.7251434326172 0.49992117285728455 0.8683981 0.14218194782733917 True +16 20077 12.86270523071289 0.23384428024291992 188.63201904296875 0.08291283249855042 215.9229736328125 0.4990159571170807 0.86840504 0.14211662113666534 True +17 21258 12.829659461975098 0.2299487590789795 180.07373046875 0.08812566101551056 216.16482543945312 0.497711718082428 0.8664554 0.14493875205516815 False +18 22439 12.827474355697632 0.25228404998779297 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31.325199127197266 28.140886783599854 150.36708068847656 0.2951955795288086 167.66534423828125 0.1792464405298233 0.8530217 0.3136785328388214 True +12 35646 30.351123809814453 0.4731106758117676 129.41354370117188 0.18716681003570557 167.41436767578125 0.18010734021663666 0.86046135 0.2894022762775421 True +13 38388 30.32957100868225 0.472947359085083 155.37136840820312 0.3350907564163208 167.05604553222656 0.1809038668870926 0.86570895 0.26842793822288513 True +14 41130 30.362322568893433 0.4721705913543701 105.12216186523438 0.27618926763534546 166.82537841796875 0.1809101104736328 0.8702146 0.2542558014392853 True +15 43872 30.261663675308228 0.5911710262298584 140.82568359375 0.2405659258365631 166.5294647216797 0.18200629949569702 0.8751648 0.24202370643615723 True +16 46614 29.70105791091919 0.4665849208831787 121.15625762939453 0.29748785495758057 166.6218719482422 0.18175099790096283 0.8749096 0.2364889532327652 False +17 49356 29.796052932739258 0.4603114128112793 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0.1909974366426468 0.8640658 0.3854873478412628 True +11 33252 30.00237512588501 0.6750099658966064 121.67776489257812 0.3632270097732544 183.48590087890625 0.1914709061384201 0.865805 0.36327698826789856 True +12 36023 29.94761323928833 0.688612699508667 111.10789489746094 0.20850762724876404 182.96311950683594 0.19313640892505646 0.8729467 0.33280131220817566 True +13 38794 30.017366409301758 0.6812024116516113 103.45514678955078 0.25932610034942627 182.35231018066406 0.19548562169075012 0.87967294 0.3062750995159149 True +14 41565 30.027710914611816 2.5057966709136963 123.78022766113281 0.2832946479320526 182.2095489501953 0.1949779987335205 0.8846965 0.2875365614891052 True +15 44336 29.987096786499023 0.6765894889831543 111.01412200927734 0.2537153959274292 182.19406127929688 0.1947951465845108 0.889927 0.26895013451576233 True +16 47107 30.015685319900513 0.71783447265625 114.6872329711914 0.19639721512794495 181.89898681640625 0.19586633145809174 0.8915044 0.2572745084762573 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535.7919311523438 0.2616012990474701 0.87410986 0.26640787720680237 True +13 40376 32.16292643547058 0.5882914066314697 444.18505859375 0.36382022500038147 534.7086791992188 0.26250648498535156 0.8772373 0.25410476326942444 True +14 43260 32.06290888786316 0.5849711894989014 412.5660400390625 0.22182267904281616 533.81298828125 0.26453593373298645 0.87962216 0.25051045417785645 True +15 46144 32.06334209442139 0.5969724655151367 489.3260803222656 0.21547359228134155 533.5086059570312 0.26404649019241333 0.88089377 0.24426564574241638 True +16 49028 32.2406051158905 0.5915353298187256 423.3459167480469 0.2162192463874817 533.21923828125 0.26425936818122864 0.8826221 0.2417568862438202 True +17 51912 32.13164281845093 0.5785102844238281 414.48681640625 0.15544649958610535 533.822998046875 0.26356175541877747 0.8805936 0.24567943811416626 False +18 54796 32.172776222229004 0.590937614440918 380.0516052246094 0.16838648915290833 534.9790649414062 0.2614370286464691 0.8780892 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at end of file diff --git a/ENCSR987CQN/cherimoya.fold_0.performance.tsv b/ENCSR987CQN/cherimoya.fold_0.performance.tsv new file mode 100644 index 0000000000000000000000000000000000000000..cdfb5b8c239e9ccf9967ef7b2e693346d89ed7f7 --- /dev/null +++ b/ENCSR987CQN/cherimoya.fold_0.performance.tsv @@ -0,0 +1,2 @@ +profile_mnll profile_jsd profile_pearson profile_spearman count_pearson count_spearman count_mse +531.4888305664062 0.3943925201892853 0.40848830342292786 0.14827293157577515 0.8547384142875671 0.8246358633041382 0.2978385090827942 \ No newline at end of file diff --git a/ENCSR987CQN/cherimoya.fold_1.evaluate.json b/ENCSR987CQN/cherimoya.fold_1.evaluate.json new file mode 100644 index 0000000000000000000000000000000000000000..df017c29755e391c810e7a02f6d762785a9a611d --- /dev/null +++ b/ENCSR987CQN/cherimoya.fold_1.evaluate.json @@ -0,0 +1,77 @@ +{ + "adam_lr": 0.001, + "adam_wd": 0.0, + "batch_size": 64, + "chroms": [ + "chr12", + "chr17" + ], + "controls": null, + "device": 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0.37075257301330566 289.8642578125 0.6013473868370056 336.0247802734375 0.2799760103225708 0.8692707 0.5337226390838623 True +16 31076 20.111847400665283 0.369781494140625 216.24212646484375 0.6497743129730225 336.1310729980469 0.27932560443878174 0.8706669 0.5298874378204346 True +17 32904 20.035553693771362 12.019821882247925 312.53082275390625 0.4145648777484894 336.41632080078125 0.27862003445625305 0.87157255 0.5297576785087585 True +18 34732 22.302212476730347 0.3846704959869385 288.35955810546875 0.8235533237457275 337.10076904296875 0.2779932916164398 0.87082976 0.534020185470581 False +19 36560 19.717185497283936 0.3676412105560303 204.1790313720703 0.46340346336364746 337.0481262207031 0.27821049094200134 0.8707487 0.5377880334854126 False diff --git a/ENCSR998IXQ/cherimoya.fold_3.performance.tsv b/ENCSR998IXQ/cherimoya.fold_3.performance.tsv new file mode 100644 index 0000000000000000000000000000000000000000..9d55f1c2bb533524d8d3768990cabe562d41b8a1 --- /dev/null +++ b/ENCSR998IXQ/cherimoya.fold_3.performance.tsv @@ -0,0 +1,2 @@ +profile_mnll profile_jsd profile_pearson profile_spearman count_pearson count_spearman count_mse +336.41632080078125 0.49347740411758423 0.27862003445625305 0.08852648735046387 0.8715725541114807 0.8238024115562439 0.5297576785087585 \ No newline at end of file diff --git a/ENCSR998IXQ/cherimoya.fold_4.fit.json b/ENCSR998IXQ/cherimoya.fold_4.fit.json new file mode 100644 index 0000000000000000000000000000000000000000..ae907a94ee024834b93e2eb56fed879268ad28eb --- /dev/null +++ b/ENCSR998IXQ/cherimoya.fold_4.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", 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