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True +8 25767 31.46120572090149 0.6653332710266113 296.82147216796875 0.975231409072876 415.4878234863281 0.38025450706481934 0.6654575 0.8619797825813293 True +9 28630 31.53512930870056 0.5535542964935303 257.43975830078125 0.6840336918830872 413.5213317871094 0.38389959931373596 0.666868 0.7956596612930298 True +10 31493 31.524290561676025 0.5398871898651123 298.9854736328125 0.5443598031997681 411.80364990234375 0.386919766664505 0.67705727 0.7584646940231323 True +11 34356 31.548359632492065 0.53955078125 348.3751220703125 0.7848204970359802 410.186279296875 0.38942745327949524 0.6825713 0.7205836772918701 True +12 37219 31.546247482299805 0.5442230701446533 254.0130615234375 0.6661807298660278 408.6455993652344 0.39282330870628357 0.6911406 0.6865535974502563 True +13 40082 31.550341606140137 0.5412476062774658 329.6888427734375 0.6658841371536255 407.23419189453125 0.39548608660697937 0.70106816 0.6761978268623352 True +14 42945 31.494696140289307 0.546367883682251 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True +12 35997 30.454529523849487 1.104058027267456 326.9869384765625 0.667252242565155 401.2630920410156 0.38160666823387146 0.7194037 0.6311256289482117 True +13 38766 30.564321994781494 15.654136896133423 304.80133056640625 0.8025655746459961 399.3507995605469 0.38478776812553406 0.7276232 0.6140905022621155 True +14 41535 30.521519660949707 0.5630009174346924 320.9269104003906 0.6221473813056946 398.92169189453125 0.3857807219028473 0.7345559 0.5933332443237305 True +15 44304 30.438865661621094 0.5619766712188721 264.5015563964844 0.5497759580612183 398.09588623046875 0.38744398951530457 0.742691 0.5846513509750366 True +16 47073 30.44481658935547 0.5522513389587402 307.591552734375 0.6448315382003784 397.9566345214844 0.3867849111557007 0.7472908 0.5725753903388977 True +17 49842 30.462522506713867 0.5414066314697266 338.2713623046875 1.0763986110687256 397.4544677734375 0.3879096806049347 0.74815917 0.5692742466926575 True +18 52611 30.46279549598694 0.5571310520172119 305.13330078125 0.45862913131713867 397.8029479980469 0.3874036967754364 0.7494279 0.5742031335830688 True +19 55380 30.40761375427246 0.5611932277679443 331.26806640625 0.5352882146835327 397.46759033203125 0.3884776532649994 0.74703884 0.579403817653656 False diff --git a/ENCSR154ZNQ/cherimoya.fold_4.evaluate.json b/ENCSR154ZNQ/cherimoya.fold_4.evaluate.json new file mode 100644 index 0000000000000000000000000000000000000000..00970eb8bd976b9f6f1979b15b9b5fe69fc2199c --- /dev/null +++ b/ENCSR154ZNQ/cherimoya.fold_4.evaluate.json @@ -0,0 +1,75 @@ +{ + "adam_lr": 0.001, + "adam_wd": 0.0, + "batch_size": 64, + "chroms": [ + "chr10", + "chr18" + ], + "controls": null, + "device": "cuda", + "dtype": "bfloat16", + "early_stopping": 20, + "exclusion_lists": [ + "https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz" + ], + "expansion": 2, + "in_window": 2114, + "loci": [ + "train_peaks.fold_4.bed", + "valid_peaks.fold_4.bed" + ], + "lw_lr": 0.001, + "lw_momentum": 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0000000000000000000000000000000000000000..78a9b432c84a0c0ff8b2adbff07335890c4ed6e4 --- /dev/null +++ b/ENCSR552RKI/cherimoya.fold_2.fit.json @@ -0,0 +1 @@ +{"n_filters": 128, "name": "cherimoya.fold_2", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr5", "chr6", "chr8", "chr9", "chr10", "chr13", "chr14", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chrX"], "validation_chroms": ["chr22", "chr7"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_2.bed", "valid_peaks.fold_2.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_2.bed", "valid_nonpeaks.fold_2.bed"], "signals": ["ENCFF260RYE.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false} \ No newline at end of file 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22919 19.40340518951416 0.35870361328125 601.0061645507812 1.1217129230499268 652.8990478515625 0.7961136698722839 0.7131451 1.177198052406311 True +13 24682 19.191924571990967 0.34670329093933105 476.97637939453125 0.8421149253845215 648.159912109375 0.7981158494949341 0.71826065 1.1384183168411255 True +14 26445 19.21115016937256 0.3492317199707031 464.21539306640625 0.9671930074691772 644.8385620117188 0.799344003200531 0.7275861 1.0824344158172607 True +15 28208 19.238277912139893 0.3473536968231201 434.00653076171875 0.9181841611862183 643.4904174804688 0.7999653816223145 0.73339105 1.075343132019043 True +16 29971 19.54654884338379 2.7914116382598877 329.539306640625 1.0851397514343262 642.8203125 0.7999928593635559 0.73490775 1.0620851516723633 True +17 31734 19.230974435806274 0.34781932830810547 463.9064025878906 0.6779234409332275 643.99462890625 0.7993558049201965 0.7353826 1.0744671821594238 True +18 33497 20.214123249053955 22.49963402748108 462.0614318847656 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0.3316898047924042 642.9776000976562 0.43801969289779663 0.8251498 0.4072225093841553 True +13 37842 29.940025568008423 0.6911323070526123 452.3607482910156 0.34656548500061035 638.7744750976562 0.44341111183166504 0.82960516 0.3934883177280426 True +14 40545 29.91793704032898 0.6948733329772949 536.8045654296875 0.3746274709701538 636.3690795898438 0.44529014825820923 0.83476025 0.37241214513778687 True +15 43248 29.885854482650757 0.6884253025054932 462.39215087890625 0.37612542510032654 635.3374633789062 0.4453124701976776 0.8403687 0.3435860276222229 True +16 45951 29.858612775802612 0.6875789165496826 412.1900939941406 0.2855483293533325 634.0233764648438 0.44696271419525146 0.84456795 0.3298550248146057 True +17 48654 29.86192560195923 0.6961405277252197 445.0808410644531 0.2488107979297638 630.5369262695312 0.4522143602371216 0.84689814 0.31745806336402893 True +18 51357 29.876758575439453 0.7677023410797119 448.92486572265625 0.21544183790683746 631.5712280273438 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diff --git a/ENCSR986HEN/cherimoya.fold_3.performance.tsv b/ENCSR986HEN/cherimoya.fold_3.performance.tsv new file mode 100644 index 0000000000000000000000000000000000000000..47d275c56920d692597743012951c13e12928ed6 --- /dev/null +++ b/ENCSR986HEN/cherimoya.fold_3.performance.tsv @@ -0,0 +1,2 @@ +profile_mnll profile_jsd profile_pearson profile_spearman count_pearson count_spearman count_mse +211.45181274414062 0.5282720327377319 0.24933423101902008 0.057791341096162796 0.7943093180656433 0.7308896780014038 0.30274948477745056 \ No newline at end of file diff --git a/ENCSR986HEN/cherimoya.fold_4.evaluate.json b/ENCSR986HEN/cherimoya.fold_4.evaluate.json new file mode 100644 index 0000000000000000000000000000000000000000..2d321bc23f351d38b0b35722fc8695f339365b1e --- /dev/null +++ b/ENCSR986HEN/cherimoya.fold_4.evaluate.json @@ -0,0 +1,75 @@ +{ + "adam_lr": 0.001, + "adam_wd": 0.0, + "batch_size": 64, + "chroms": [ + "chr10", + "chr18" + ], + "controls": null, + "device": "cuda", + 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