diff --git "a/catalog.json" "b/catalog.json"
--- "a/catalog.json"
+++ "b/catalog.json"
@@ -1,1430 +1,1489 @@
 [
   {
-    "id": "alphagenome_tss1mb_regulatory_tracksummary_pca256",
-    "name": "AlphaGenome-TSS1Mb-regulatoryTrackSummary-PCA256-v1.1",
+    "algorithm": "signed log1p per summary feature, z-score across genes, PCA to 256 dimensions",
     "category": "Regulatory",
     "category_source": "manual",
-    "modality": "regulatory genomics / AlphaGenome regulatory-track summary",
-    "algorithm": "signed log1p per summary feature, z-score across genes, PCA to 256 dimensions",
-    "description": "Gene-level regulatory representation derived from AlphaGenome track-summary predictions around the transcription start site and reduced to 256 dimensions.",
-    "n_genes": 20084,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 99.94,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256",
+    "description": "Gene-level regulatory representation derived from AlphaGenome track-summary predictions around the transcription start site and reduced to 256 dimensions.",
+    "id": "alphagenome_tss1mb_regulatory_tracksummary_pca256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/metadata.json",
+    "modality": "regulatory genomics / AlphaGenome regulatory-track summary",
+    "n_dims": 256,
+    "n_genes": 20084,
+    "name": "AlphaGenome-TSS1Mb-regulatoryTrackSummary-PCA256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "basenji2_tss_131kb_human_central3",
-    "name": "Basenji2-TSS-131kb-human-central3-log1p-zscore-v1.1",
+    "algorithm": "Basenji2 PyTorch port",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "regulatory DNA / Basenji2 TSS sequence model",
-    "algorithm": "Basenji2 PyTorch port",
-    "description": "Basenji2-TSS-131kb-human-central3-log1p-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 20097,
-    "n_dims": 5313,
+    "community_contribution": false,
     "coverage_pct": 100.0,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/basenji2_tss_131kb_human_central3",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/basenji2_tss_131kb_human_central3",
+    "description": "Basenji2-TSS-131kb-human-central3-log1p-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "basenji2_tss_131kb_human_central3",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/basenji2_tss_131kb_human_central3/metadata.json",
+    "modality": "regulatory DNA / Basenji2 TSS sequence model",
+    "n_dims": 5313,
+    "n_genes": 20097,
+    "name": "Basenji2-TSS-131kb-human-central3-log1p-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/basenji2_tss_131kb_human_central3",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "biobert_gene_protein_summary",
-    "name": "BioBERT-GeneProteinSummary-v1.1",
+    "algorithm": "dmis-lab/biobert-base-cased-v1.2",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "literature_text_gene_summary",
-    "algorithm": "dmis-lab/biobert-base-cased-v1.2",
-    "description": "NCBI gene card summaries plus UniProt protein summaries when available",
-    "n_genes": 19168,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 95.38,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/biobert_gene_protein_summary",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/biobert_gene_protein_summary",
+    "description": "NCBI gene card summaries plus UniProt protein summaries when available",
+    "id": "biobert_gene_protein_summary",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/biobert_gene_protein_summary/metadata.json",
+    "modality": "literature_text_gene_summary",
+    "n_dims": 768,
+    "n_genes": 19168,
+    "name": "BioBERT-GeneProteinSummary-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/biobert_gene_protein_summary",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "bioconceptvec_cbow",
-    "name": "BioConceptVec-CBOW-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text",
-    "algorithm": "see package metadata",
-    "description": "BioConceptVec-CBOW-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17040,
-    "n_dims": 100,
+    "community_contribution": false,
     "coverage_pct": 84.79,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/bioconceptvec_cbow",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_cbow",
+    "description": "BioConceptVec-CBOW-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "bioconceptvec_cbow",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_cbow/metadata.json",
+    "modality": "biomedical_literature_text",
+    "n_dims": 100,
+    "n_genes": 17040,
+    "name": "BioConceptVec-CBOW-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_cbow",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "bioconceptvec_fasttext",
-    "name": "BioConceptVec-fastText-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text",
-    "algorithm": "see package metadata",
-    "description": "BioConceptVec-fastText-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17040,
-    "n_dims": 100,
+    "community_contribution": false,
     "coverage_pct": 84.79,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/bioconceptvec_fasttext",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_fasttext",
+    "description": "BioConceptVec-fastText-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "bioconceptvec_fasttext",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_fasttext/metadata.json",
+    "modality": "biomedical_literature_text",
+    "n_dims": 100,
+    "n_genes": 17040,
+    "name": "BioConceptVec-fastText-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_fasttext",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "bioconceptvec_glove",
-    "name": "BioConceptVec-GloVe-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text",
-    "algorithm": "see package metadata",
-    "description": "BioConceptVec-GloVe-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17040,
-    "n_dims": 100,
+    "community_contribution": false,
     "coverage_pct": 84.79,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/bioconceptvec_glove",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_glove",
+    "description": "BioConceptVec-GloVe-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "bioconceptvec_glove",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_glove/metadata.json",
+    "modality": "biomedical_literature_text",
+    "n_dims": 100,
+    "n_genes": 17040,
+    "name": "BioConceptVec-GloVe-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_glove",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "bioconceptvec_skipgram",
-    "name": "BioConceptVec-SkipGram-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text",
-    "algorithm": "see package metadata",
-    "description": "BioConceptVec-SkipGram-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17040,
-    "n_dims": 100,
+    "community_contribution": false,
     "coverage_pct": 84.79,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/bioconceptvec_skipgram",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_skipgram",
+    "description": "BioConceptVec-SkipGram-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "bioconceptvec_skipgram",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_skipgram/metadata.json",
+    "modality": "biomedical_literature_text",
+    "n_dims": 100,
+    "n_genes": 17040,
+    "name": "BioConceptVec-SkipGram-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/bioconceptvec_skipgram",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "cmap_gse106127_cgs_mean_landmark978_zscore",
-    "name": "CMap-GSE106127-CGS-mean-landmark978-zscore-v1.1",
+    "algorithm": "see package metadata",
     "category": "Expression",
     "category_source": "heuristic",
-    "modality": "perturbational transcriptomics / L1000 consensus genetic perturbation signatures",
-    "algorithm": "see package metadata",
-    "description": "CMap-GSE106127-CGS-mean-landmark978-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 4070,
-    "n_dims": 978,
+    "community_contribution": false,
     "coverage_pct": 20.25,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore",
+    "description": "CMap-GSE106127-CGS-mean-landmark978-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "cmap_gse106127_cgs_mean_landmark978_zscore",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore/metadata.json",
+    "modality": "perturbational transcriptomics / L1000 consensus genetic perturbation signatures",
+    "n_dims": 978,
+    "n_genes": 4070,
+    "name": "CMap-GSE106127-CGS-mean-landmark978-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "deepnf_string_v12_ppmi_svd_fusion",
-    "name": "deepNF-STRING-v12-PPMI-SVD-fusion-v1.1",
+    "algorithm": "see package metadata",
     "category": "Network",
     "category_source": "heuristic",
-    "modality": "STRING network multimodal sparse PPMI/SVD fusion",
-    "algorithm": "see package metadata",
-    "description": "deepNF-STRING-v12-PPMI-SVD-fusion-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19071,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 94.89,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/deepnf_string_v12_ppmi_svd_fusion",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepnf_string_v12_ppmi_svd_fusion",
+    "description": "deepNF-STRING-v12-PPMI-SVD-fusion-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "deepnf_string_v12_ppmi_svd_fusion",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepnf_string_v12_ppmi_svd_fusion/metadata.json",
+    "modality": "STRING network multimodal sparse PPMI/SVD fusion",
+    "n_dims": 256,
+    "n_genes": 19071,
+    "name": "deepNF-STRING-v12-PPMI-SVD-fusion-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepnf_string_v12_ppmi_svd_fusion",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "deepsea_tss_1kb_epigenomic_probs",
-    "name": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore-v1.1",
+    "algorithm": "DeepSEA/predict from Kipoi",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "regulatory DNA / promoter-TSS sequence model",
-    "algorithm": "DeepSEA/predict from Kipoi",
-    "description": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 20097,
-    "n_dims": 919,
+    "community_contribution": false,
     "coverage_pct": 100.0,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/deepsea_tss_1kb_epigenomic_probs",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepsea_tss_1kb_epigenomic_probs",
+    "description": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "deepsea_tss_1kb_epigenomic_probs",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepsea_tss_1kb_epigenomic_probs/metadata.json",
+    "modality": "regulatory DNA / promoter-TSS sequence model",
+    "n_dims": 919,
+    "n_genes": 20097,
+    "name": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/deepsea_tss_1kb_epigenomic_probs",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "depmap_crispr_gene_effect_pca256",
-    "name": "DepMap-CRISPRGeneEffect-PCA256-v1.1",
+    "algorithm": "see package metadata",
     "category": "Functional Genomics",
     "category_source": "manual",
-    "modality": "functional genomics / CRISPR dependency",
-    "algorithm": "see package metadata",
-    "description": "Gene representation derived from DepMap CRISPR gene-effect profiles across cancer cell-line models, standardized and reduced to 256 dimensions using PCA.",
-    "n_genes": 18562,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 92.36,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/depmap_crispr_gene_effect_pca256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/depmap_crispr_gene_effect_pca256",
+    "description": "Gene representation derived from DepMap CRISPR gene-effect profiles across cancer cell-line models, standardized and reduced to 256 dimensions using PCA.",
+    "id": "depmap_crispr_gene_effect_pca256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/depmap_crispr_gene_effect_pca256/metadata.json",
+    "modality": "functional genomics / CRISPR dependency",
+    "n_dims": 256,
+    "n_genes": 18562,
+    "name": "DepMap-CRISPRGeneEffect-PCA256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/depmap_crispr_gene_effect_pca256",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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-    "name": "dnabert2_117m_cds_v1_1",
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     "category": "Protein",
     "category_source": "heuristic",
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     "coverage_pct": 99.94,
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     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/dnabert2_117m_cds/metadata.json",
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-    "name": "Enformer-TSS-393kb-human-central3-log1p-zscore-v1.1",
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     "category_source": "heuristic",
-    "modality": "regulatory DNA / long-range TSS sequence model",
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     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein_sequence",
-    "algorithm": "see package metadata",
-    "description": "ESM2-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
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-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
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     "dataset_path": "data/embeddings/esm2",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
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+  },
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+    "n_genes": 1500,
+    "name": "External Reference Smoke Test 2026-07-27",
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   },
   {
-    "id": "frogs_archs4_256",
-    "name": "frogs_archs4_256_v1_1",
+    "algorithm": "FRoGS ARCHS4 gene embedding",
     "category": "Functional Genomics",
     "category_source": "manual",
-    "modality": "functional gene representation / ARCHS4 expression",
-    "algorithm": "FRoGS ARCHS4 gene embedding",
-    "description": "FRoGS gene representation incorporating functional relationships learned using large-scale ARCHS4 gene-expression information.",
-    "n_genes": 16265,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 80.93,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/frogs_archs4_256",
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+    "description": "FRoGS gene representation incorporating functional relationships learned using large-scale ARCHS4 gene-expression information.",
+    "id": "frogs_archs4_256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/frogs_archs4_256/metadata.json",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "gene2vec",
-    "name": "Gene2Vec-v1.1",
+    "algorithm": "see package metadata",
     "category": "Expression",
     "category_source": "heuristic",
-    "modality": "coexpression_expression",
-    "algorithm": "see package metadata",
-    "description": "Gene2Vec-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17916,
-    "n_dims": 200,
+    "community_contribution": false,
     "coverage_pct": 89.15,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/gene2vec",
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+    "description": "Gene2Vec-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "gene2vec",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/gene2vec/metadata.json",
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+    "n_genes": 17916,
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "genecompass_base_gene_token",
-    "name": "genecompass_base_gene_token_v1_1",
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     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "gene expression single-cell foundation model / knowledge-informed gene-token embedding",
-    "algorithm": "none; static learned token embedding weight extracted directly from checkpoint",
-    "description": "genecompass_base_gene_token_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 16578,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 82.49,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/genecompass_base_gene_token",
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+    "description": "genecompass_base_gene_token_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "genecompass_base_gene_token",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/genecompass_base_gene_token/metadata.json",
+    "modality": "gene expression single-cell foundation model / knowledge-informed gene-token embedding",
+    "n_dims": 768,
+    "n_genes": 16578,
+    "name": "genecompass_base_gene_token_v1_1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "geneformer_v2_316m",
-    "name": "Geneformer-V2-316M-v1.1",
+    "algorithm": "see package metadata",
     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "single_cell_expression_foundation_model",
-    "algorithm": "see package metadata",
-    "description": "Geneformer-V2-316M-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 20007,
-    "n_dims": 1152,
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     "coverage_pct": 99.55,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
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     "dataset_path": "data/embeddings/geneformer_v2_316m",
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+    "description": "Geneformer-V2-316M-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "geneformer_v2_316m",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/geneformer_v2_316m/metadata.json",
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+    "n_genes": 20007,
+    "name": "Geneformer-V2-316M-v1.1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "genept_ada_conservative",
-    "name": "GenePT-ADA-v1.1-conservative",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text",
-    "algorithm": "see package metadata",
-    "description": "GenePT-ADA-v1.1-conservative. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19099,
-    "n_dims": 1536,
+    "community_contribution": false,
     "coverage_pct": 95.03,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/genept_ada",
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+    "description": "GenePT-ADA-v1.1-conservative. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "genept_ada_conservative",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/genept_ada/metadata.json",
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+    "n_genes": 19099,
+    "name": "GenePT-ADA-v1.1-conservative",
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+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "genept_model3_gene_protein_conservative",
-    "name": "GenePT-Model3-GeneProtein-v1.1-conservative",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "biomedical_literature_text_plus_protein_sequence_text",
-    "algorithm": "see package metadata",
-    "description": "GenePT-Model3-GeneProtein-v1.1-conservative. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19103,
-    "n_dims": 3072,
+    "community_contribution": false,
     "coverage_pct": 95.05,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/genept_model3_gene_protein",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/genept_model3_gene_protein",
+    "description": "GenePT-Model3-GeneProtein-v1.1-conservative. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "genept_model3_gene_protein_conservative",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/genept_model3_gene_protein/metadata.json",
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+    "n_genes": 19103,
+    "name": "GenePT-Model3-GeneProtein-v1.1-conservative",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
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   },
   {
-    "id": "gtex_tissue_median_log1p_zscore",
-    "name": "GTEx-tissue-median-log1p-zscore-v1.1",
+    "algorithm": "see package metadata",
     "category": "Expression",
     "category_source": "heuristic",
-    "modality": "bulk RNA expression / normal tissue expression",
-    "algorithm": "see package metadata",
-    "description": "GTEx-tissue-median-log1p-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19353,
-    "n_dims": 68,
+    "community_contribution": false,
     "coverage_pct": 96.3,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/gtex_tissue_median_log1p_zscore",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/gtex_tissue_median_log1p_zscore",
+    "description": "GTEx-tissue-median-log1p-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "gtex_tissue_median_log1p_zscore",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/gtex_tissue_median_log1p_zscore/metadata.json",
+    "modality": "bulk RNA expression / normal tissue expression",
+    "n_dims": 68,
+    "n_genes": 19353,
+    "name": "GTEx-tissue-median-log1p-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/gtex_tissue_median_log1p_zscore",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "helix_mrna_full_transcript",
-    "name": "helix_mrna_full_transcript_v1_1",
+    "algorithm": "helical-ai/helix-mRNA",
     "category": "RNA",
     "category_source": "manual",
-    "modality": "RNA language model / mature mRNA transcript",
-    "algorithm": "helical-ai/helix-mRNA",
-    "description": "Gene-level mature-transcript representation generated with Helix-mRNA and mean-pooled across non-special sequence tokens.",
-    "n_genes": 19976,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 99.4,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/helix_mrna_full_transcript",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/helix_mrna_full_transcript",
+    "description": "Gene-level mature-transcript representation generated with Helix-mRNA and mean-pooled across non-special sequence tokens.",
+    "id": "helix_mrna_full_transcript",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/helix_mrna_full_transcript/metadata.json",
+    "modality": "RNA language model / mature mRNA transcript",
+    "n_dims": 256,
+    "n_genes": 19976,
+    "name": "helix_mrna_full_transcript_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/helix_mrna_full_transcript",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "hetionet_nonppi_biomedical_context_tfidf_svd256",
-    "name": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context",
-    "algorithm": "see package metadata",
-    "description": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18787,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 93.48,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256",
+    "description": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "hetionet_nonppi_biomedical_context_tfidf_svd256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256/metadata.json",
+    "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context",
+    "n_dims": 256,
+    "n_genes": 18787,
+    "name": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "hpa_normal_ihc_tissue_level_zscore",
-    "name": "HPA-normal-IHC-tissue-level-zscore-v1.1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein expression / normal tissue immunohistochemistry",
-    "algorithm": "see package metadata",
-    "description": "HPA-normal-IHC-tissue-level-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 13420,
-    "n_dims": 59,
+    "community_contribution": false,
     "coverage_pct": 66.78,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/hpa_normal_ihc_tissue_level_zscore",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_normal_ihc_tissue_level_zscore",
+    "description": "HPA-normal-IHC-tissue-level-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "hpa_normal_ihc_tissue_level_zscore",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_normal_ihc_tissue_level_zscore/metadata.json",
+    "modality": "protein expression / normal tissue immunohistochemistry",
+    "n_dims": 59,
+    "n_genes": 13420,
+    "name": "HPA-normal-IHC-tissue-level-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_normal_ihc_tissue_level_zscore",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "hpa_subcellular_location_multihot_zscore",
-    "name": "HPA-subcellular-location-multihot-zscore-v1.1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein subcellular localization",
-    "algorithm": "see package metadata",
-    "description": "HPA-subcellular-location-multihot-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 13581,
-    "n_dims": 50,
+    "community_contribution": false,
     "coverage_pct": 67.58,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/hpa_subcellular_location_multihot_zscore",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_subcellular_location_multihot_zscore",
+    "description": "HPA-subcellular-location-multihot-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "hpa_subcellular_location_multihot_zscore",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_subcellular_location_multihot_zscore/metadata.json",
+    "modality": "protein subcellular localization",
+    "n_dims": 50,
+    "n_genes": 13581,
+    "name": "HPA-subcellular-location-multihot-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hpa_subcellular_location_multihot_zscore",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "hyenadna_medium_160k_cds",
-    "name": "hyenadna_medium_160k_cds_v1_1",
+    "algorithm": "final hidden-state mean pooling over non-special nucleotide tokens; long CDS split into chunks and token-count weighted",
     "category": "DNA",
     "category_source": "manual",
-    "modality": "DNA language model / canonical coding sequence",
-    "algorithm": "final hidden-state mean pooling over non-special nucleotide tokens; long CDS split into chunks and token-count weighted",
-    "description": "Gene-level canonical-CDS representation generated with the HyenaDNA medium 160k sequence-length model.",
-    "n_genes": 20085,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 99.94,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/hyenadna_medium_160k_cds",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hyenadna_medium_160k_cds",
+    "description": "Gene-level canonical-CDS representation generated with the HyenaDNA medium 160k sequence-length model.",
+    "id": "hyenadna_medium_160k_cds",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hyenadna_medium_160k_cds/metadata.json",
+    "modality": "DNA language model / canonical coding sequence",
+    "n_dims": 256,
+    "n_genes": 20085,
+    "name": "hyenadna_medium_160k_cds_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/hyenadna_medium_160k_cds",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "mahi_all_contexts_mean",
-    "name": "mahi_all_contexts_mean_v1_1",
+    "algorithm": "mean across all non-global tissue/cell contexts per Entrez gene",
     "category": "Multimodal",
     "category_source": "manual",
-    "modality": "multimodal tissue-aware graph representation / mean across non-global contexts",
-    "algorithm": "mean across all non-global tissue/cell contexts per Entrez gene",
-    "description": "Mahi gene representation formed by averaging embeddings across all available non-global tissue and cell contexts.",
-    "n_genes": 18918,
-    "n_dims": 3666,
+    "community_contribution": false,
     "coverage_pct": 94.13,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/mahi_all_contexts_mean",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_all_contexts_mean",
+    "description": "Mahi gene representation formed by averaging embeddings across all available non-global tissue and cell contexts.",
+    "id": "mahi_all_contexts_mean",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_all_contexts_mean/metadata.json",
+    "modality": "multimodal tissue-aware graph representation / mean across non-global contexts",
+    "n_dims": 3666,
+    "n_genes": 18918,
+    "name": "mahi_all_contexts_mean_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_all_contexts_mean",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "mahi_global",
-    "name": "mahi_global_v1_1",
+    "algorithm": "global context only",
     "category": "Multimodal",
     "category_source": "manual",
-    "modality": "multimodal tissue-aware graph representation / global context",
-    "algorithm": "global context only",
-    "description": "Global-context Mahi gene representation integrating regulatory, protein and network-derived molecular information.",
-    "n_genes": 18918,
-    "n_dims": 3666,
+    "community_contribution": false,
     "coverage_pct": 94.13,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/mahi_global",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_global",
+    "description": "Global-context Mahi gene representation integrating regulatory, protein and network-derived molecular information.",
+    "id": "mahi_global",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_global/metadata.json",
+    "modality": "multimodal tissue-aware graph representation / global context",
+    "n_dims": 3666,
+    "n_genes": 18918,
+    "name": "mahi_global_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mahi_global",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "mashup_string",
-    "name": "Mashup-STRING-v1.1",
+    "algorithm": "see package metadata",
     "category": "Network",
     "category_source": "heuristic",
-    "modality": "network_ppi",
-    "algorithm": "see package metadata",
-    "description": "Mashup-STRING-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 16331,
-    "n_dims": 800,
+    "community_contribution": false,
     "coverage_pct": 81.26,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/mashup_string",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mashup_string",
+    "description": "Mashup-STRING-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "mashup_string",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mashup_string/metadata.json",
+    "modality": "network_ppi",
+    "n_dims": 800,
+    "n_genes": 16331,
+    "name": "Mashup-STRING-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/mashup_string",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "msa_transformer_depth1_uniprot_human",
-    "name": "MSATransformer-depth1-UniProt-human-v1.1",
+    "algorithm": "esm_msa1b_t12_100M_UR50S",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein_sequence_msa_transformer_depth1",
-    "algorithm": "esm_msa1b_t12_100M_UR50S",
-    "description": "MSATransformer-depth1-UniProt-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19472,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 96.89,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/msa_transformer_depth1_uniprot_human",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/msa_transformer_depth1_uniprot_human",
+    "description": "MSATransformer-depth1-UniProt-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "msa_transformer_depth1_uniprot_human",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/msa_transformer_depth1_uniprot_human/metadata.json",
+    "modality": "protein_sequence_msa_transformer_depth1",
+    "n_dims": 768,
+    "n_genes": 19472,
+    "name": "MSATransformer-depth1-UniProt-human-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/msa_transformer_depth1_uniprot_human",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "newt_archs4_256",
-    "name": "NEWT-ARCHS4-256-v1.1",
+    "algorithm": "see package metadata",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
-    "algorithm": "see package metadata",
-    "description": "NEWT-ARCHS4-256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 16265,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 80.93,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/newt_archs4_256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_archs4_256",
+    "description": "NEWT-ARCHS4-256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "newt_archs4_256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_archs4_256/metadata.json",
+    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
+    "n_dims": 256,
+    "n_genes": 16265,
+    "name": "NEWT-ARCHS4-256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_archs4_256",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "newt_cellnet",
-    "name": "NEWT-CellNet-v1.1",
+    "algorithm": "see package metadata",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
-    "algorithm": "see package metadata",
-    "description": "NEWT-CellNet-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17499,
-    "n_dims": 128,
+    "community_contribution": false,
     "coverage_pct": 87.07,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/newt_cellnet",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_cellnet",
+    "description": "NEWT-CellNet-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "newt_cellnet",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_cellnet/metadata.json",
+    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
+    "n_dims": 128,
+    "n_genes": 17499,
+    "name": "NEWT-CellNet-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_cellnet",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "newt_go_256",
-    "name": "NEWT-GO-256-v1.1",
+    "algorithm": "see package metadata",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
-    "algorithm": "see package metadata",
-    "description": "NEWT-GO-256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 13788,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 68.61,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/newt_go_256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_256",
+    "description": "NEWT-GO-256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "newt_go_256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_256/metadata.json",
+    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
+    "n_dims": 256,
+    "n_genes": 13788,
+    "name": "NEWT-GO-256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_256",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "newt_go_graph",
-    "name": "NEWT-GO-graph-v1.1",
+    "algorithm": "see package metadata",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
-    "algorithm": "see package metadata",
-    "description": "NEWT-GO-graph-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 13788,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 68.61,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/newt_go_graph",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_graph",
+    "description": "NEWT-GO-graph-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "newt_go_graph",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_graph/metadata.json",
+    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
+    "n_dims": 256,
+    "n_genes": 13788,
+    "name": "NEWT-GO-graph-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_go_graph",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "newt_msigdb_bundle",
-    "name": "NEWT-MSigDB-bundle-v1.1",
+    "algorithm": "see package metadata",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
-    "algorithm": "see package metadata",
-    "description": "NEWT-MSigDB-bundle-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 15423,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 76.74,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/newt_msigdb_bundle",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_msigdb_bundle",
+    "description": "NEWT-MSigDB-bundle-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "newt_msigdb_bundle",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_msigdb_bundle/metadata.json",
+    "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT",
+    "n_dims": 256,
+    "n_genes": 15423,
+    "name": "NEWT-MSigDB-bundle-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/newt_msigdb_bundle",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "node2vec_consensus_ppi",
-    "name": "Node2Vec-consensus-PPI-v1.1",
+    "algorithm": "see package metadata",
     "category": "Network",
     "category_source": "heuristic",
-    "modality": "PPI network embedding",
-    "algorithm": "see package metadata",
-    "description": "Node2Vec-consensus-PPI-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18356,
-    "n_dims": 128,
+    "community_contribution": false,
     "coverage_pct": 91.34,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/node2vec_consensus_ppi",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/node2vec_consensus_ppi",
+    "description": "Node2Vec-consensus-PPI-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "node2vec_consensus_ppi",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/node2vec_consensus_ppi/metadata.json",
+    "modality": "PPI network embedding",
+    "n_dims": 128,
+    "n_genes": 18356,
+    "name": "Node2Vec-consensus-PPI-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/node2vec_consensus_ppi",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "nt_v2_500m_multispecies_cds",
-    "name": "nt_v2_500m_multispecies_cds_v1_1",
+    "algorithm": "InstaDeepAI/nucleotide-transformer-v2-500m-multi-species",
     "category": "DNA",
     "category_source": "manual",
-    "modality": "DNA language model / canonical coding sequence",
-    "algorithm": "InstaDeepAI/nucleotide-transformer-v2-500m-multi-species",
-    "description": "Gene-level canonical-CDS representation generated with the 500M-parameter multispecies Nucleotide Transformer v2 checkpoint.",
-    "n_genes": 20085,
-    "n_dims": 1024,
+    "community_contribution": false,
     "coverage_pct": 99.94,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/nt_v2_500m_multispecies_cds",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/nt_v2_500m_multispecies_cds",
+    "description": "Gene-level canonical-CDS representation generated with the 500M-parameter multispecies Nucleotide Transformer v2 checkpoint.",
+    "id": "nt_v2_500m_multispecies_cds",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/nt_v2_500m_multispecies_cds/metadata.json",
+    "modality": "DNA language model / canonical coding sequence",
+    "n_dims": 1024,
+    "n_genes": 20085,
+    "name": "nt_v2_500m_multispecies_cds_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/nt_v2_500m_multispecies_cds",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "opa2vec_goa_human",
-    "name": "OPA2Vec-GOA-human-v1.1",
+    "algorithm": "see package metadata",
     "category": "Knowledge",
     "category_source": "heuristic",
-    "modality": "Gene Ontology / ontology-annotation semantic embedding",
-    "algorithm": "see package metadata",
-    "description": "OPA2Vec-GOA-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18660,
-    "n_dims": 200,
+    "community_contribution": false,
     "coverage_pct": 92.85,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/opa2vec_goa_human",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/opa2vec_goa_human",
+    "description": "OPA2Vec-GOA-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "opa2vec_goa_human",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/opa2vec_goa_human/metadata.json",
+    "modality": "Gene Ontology / ontology-annotation semantic embedding",
+    "n_dims": 200,
+    "n_genes": 18660,
+    "name": "OPA2Vec-GOA-human-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/opa2vec_goa_human",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "orthrus_base_4track_full_transcript",
-    "name": "orthrus_base_4track_full_transcript_v1_1",
+    "algorithm": "Orthrus base 4-track",
     "category": "RNA",
     "category_source": "manual",
-    "modality": "RNA foundation model / mature mRNA transcript",
-    "algorithm": "Orthrus base 4-track",
-    "description": "Mature-transcript representation generated with the Orthrus base four-track RNA foundation model.",
-    "n_genes": 19976,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 99.4,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/orthrus_base_4track_full_transcript",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/orthrus_base_4track_full_transcript",
+    "description": "Mature-transcript representation generated with the Orthrus base four-track RNA foundation model.",
+    "id": "orthrus_base_4track_full_transcript",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/orthrus_base_4track_full_transcript/metadata.json",
+    "modality": "RNA foundation model / mature mRNA transcript",
+    "n_dims": 256,
+    "n_genes": 19976,
+    "name": "orthrus_base_4track_full_transcript_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/orthrus_base_4track_full_transcript",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "primekg_nonppi_biomedical_context_tfidf_svd256",
-    "name": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256-v1.1",
+    "algorithm": "see package metadata",
     "category": "Literature",
     "category_source": "heuristic",
-    "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context",
-    "algorithm": "see package metadata",
-    "description": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19216,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 95.62,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256",
+    "description": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "primekg_nonppi_biomedical_context_tfidf_svd256",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256/metadata.json",
+    "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context",
+    "n_dims": 256,
+    "n_genes": 19216,
+    "name": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_aac",
-    "name": "probe_aac_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_aac_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 20,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_aac",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_aac",
+    "description": "probe_aac_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_aac",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_aac/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 20,
+    "n_genes": 18873,
+    "name": "probe_aac_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_aac",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_albert",
-    "name": "probe_albert_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_albert_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 4096,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_albert",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_albert",
+    "description": "probe_albert_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_albert",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_albert/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 4096,
+    "n_genes": 18453,
+    "name": "probe_albert_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_albert",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_apaac",
-    "name": "probe_apaac_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_apaac_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18871,
-    "n_dims": 80,
+    "community_contribution": false,
     "coverage_pct": 93.9,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_apaac",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_apaac",
+    "description": "probe_apaac_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_apaac",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_apaac/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 80,
+    "n_genes": 18871,
+    "name": "probe_apaac_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_apaac",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_bert_bfd",
-    "name": "probe_bert_bfd_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_bert_bfd_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 1024,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_bert_bfd",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_bfd",
+    "description": "probe_bert_bfd_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_bert_bfd",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_bfd/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 1024,
+    "n_genes": 18453,
+    "name": "probe_bert_bfd_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_bfd",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_bert_pfam",
-    "name": "probe_bert_pfam_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_bert_pfam_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18461,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 91.86,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_bert_pfam",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_pfam",
+    "description": "probe_bert_pfam_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_bert_pfam",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_pfam/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 768,
+    "n_genes": 18461,
+    "name": "probe_bert_pfam_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_pfam",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_blast",
-    "name": "probe_blast_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_blast_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 20421,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_blast",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_blast",
+    "description": "probe_blast_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_blast",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_blast/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 20421,
+    "n_genes": 18873,
+    "name": "probe_blast_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_blast",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_cpc_prot",
-    "name": "probe_cpc_prot_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_cpc_prot_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 512,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_cpc_prot",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_cpc_prot",
+    "description": "probe_cpc_prot_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_cpc_prot",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_cpc_prot/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 512,
+    "n_genes": 18453,
+    "name": "probe_cpc_prot_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_cpc_prot",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_esmb1",
-    "name": "probe_esmb1_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_esmb1_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 1280,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_esmb1",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_esmb1",
+    "description": "probe_esmb1_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_esmb1",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_esmb1/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 1280,
+    "n_genes": 18453,
+    "name": "probe_esmb1_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_esmb1",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_gene2vec_uniprot",
-    "name": "probe_gene2vec_uniprot_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_gene2vec_uniprot_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17564,
-    "n_dims": 200,
+    "community_contribution": false,
     "coverage_pct": 87.4,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_gene2vec_uniprot",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_gene2vec_uniprot",
+    "description": "probe_gene2vec_uniprot_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_gene2vec_uniprot",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_gene2vec_uniprot/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 200,
+    "n_genes": 17564,
+    "name": "probe_gene2vec_uniprot_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_gene2vec_uniprot",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_hmmer",
-    "name": "probe_hmmer_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_hmmer_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 20421,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_hmmer",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_hmmer",
+    "description": "probe_hmmer_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_hmmer",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_hmmer/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 20421,
+    "n_genes": 18873,
+    "name": "probe_hmmer_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_hmmer",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_ksep",
-    "name": "probe_ksep_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_ksep_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18801,
-    "n_dims": 400,
+    "community_contribution": false,
     "coverage_pct": 93.55,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 23,
     "dataset_path": "data/embeddings/probe_ksep",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_ksep",
+    "description": "probe_ksep_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_ksep",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_ksep/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 400,
+    "n_genes": 18801,
+    "name": "probe_ksep_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_ksep",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 23
   },
   {
-    "id": "probe_learned_vec",
-    "name": "probe_learned_vec_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_learned_vec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 64,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_learned_vec",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_learned_vec",
+    "description": "probe_learned_vec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_learned_vec",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_learned_vec/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 64,
+    "n_genes": 18873,
+    "name": "probe_learned_vec_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_learned_vec",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_mut2vec",
-    "name": "probe_mut2vec_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_mut2vec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 17445,
-    "n_dims": 300,
+    "community_contribution": false,
     "coverage_pct": 86.8,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_mut2vec",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_mut2vec",
+    "description": "probe_mut2vec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_mut2vec",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_mut2vec/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 300,
+    "n_genes": 17445,
+    "name": "probe_mut2vec_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_mut2vec",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_pfam",
-    "name": "probe_pfam_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_pfam_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 6227,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 1532,
     "dataset_path": "data/embeddings/probe_pfam",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_pfam",
+    "description": "probe_pfam_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_pfam",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_pfam/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 6227,
+    "n_genes": 18873,
+    "name": "probe_pfam_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_pfam",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 1532
   },
   {
-    "id": "probe_protvec",
-    "name": "probe_protvec_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_protvec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 100,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_protvec",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_protvec",
+    "description": "probe_protvec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_protvec",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_protvec/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 100,
+    "n_genes": 18873,
+    "name": "probe_protvec_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_protvec",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_seqvec",
-    "name": "probe_seqvec_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_seqvec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 1024,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_seqvec",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_seqvec",
+    "description": "probe_seqvec_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_seqvec",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_seqvec/metadata.json",
+    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
+    "n_dims": 1024,
+    "n_genes": 18873,
+    "name": "probe_seqvec_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_seqvec",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_t5",
-    "name": "probe_t5_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_t5_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 1024,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_t5",
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+    "description": "probe_t5_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_t5",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_t5/metadata.json",
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+    "n_dims": 1024,
+    "n_genes": 18453,
+    "name": "probe_t5_v1_1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_tcga_embedding",
-    "name": "probe_tcga_embedding_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_tcga_embedding_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18221,
-    "n_dims": 50,
+    "community_contribution": false,
     "coverage_pct": 90.67,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_tcga_embedding",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_tcga_embedding",
+    "description": "probe_tcga_embedding_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_tcga_embedding",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_tcga_embedding/metadata.json",
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+    "n_genes": 18221,
+    "name": "probe_tcga_embedding_v1_1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_unirep",
-    "name": "probe_unirep_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_unirep_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18873,
-    "n_dims": 5700,
+    "community_contribution": false,
     "coverage_pct": 93.91,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_unirep",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_unirep",
+    "description": "probe_unirep_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_unirep",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_unirep/metadata.json",
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+    "n_genes": 18873,
+    "name": "probe_unirep_v1_1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "probe_xlnet",
-    "name": "probe_xlnet_v1_1",
+    "algorithm": "see package metadata",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "protein sequence / protein representation from PROBE human UniProt archive",
-    "algorithm": "see package metadata",
-    "description": "probe_xlnet_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 18453,
-    "n_dims": 1024,
+    "community_contribution": false,
     "coverage_pct": 91.82,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/probe_xlnet",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_xlnet",
+    "description": "probe_xlnet_v1_1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "probe_xlnet",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_xlnet/metadata.json",
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+    "n_dims": 1024,
+    "n_genes": 18453,
+    "name": "probe_xlnet_v1_1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "pubmedbert_gene_protein_summary",
-    "name": "PubMedBERT-GeneProteinSummary-v1.1",
+    "algorithm": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext",
     "category": "Protein",
     "category_source": "heuristic",
-    "modality": "literature_text_gene_summary",
-    "algorithm": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext",
-    "description": "NCBI gene card summaries plus UniProt protein summaries when available",
-    "n_genes": 19168,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 95.38,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/pubmedbert_gene_protein_summary",
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+    "description": "NCBI gene card summaries plus UniProt protein summaries when available",
+    "id": "pubmedbert_gene_protein_summary",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/pubmedbert_gene_protein_summary/metadata.json",
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+    "n_genes": 19168,
+    "name": "PubMedBERT-GeneProteinSummary-v1.1",
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     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "rnafm_full_transcript",
-    "name": "rnafm_full_transcript_v1_1",
+    "algorithm": "RNA-FM / rna_fm_t12",
     "category": "RNA",
     "category_source": "manual",
-    "modality": "RNA language model / mature mRNA transcript",
-    "algorithm": "RNA-FM / rna_fm_t12",
-    "description": "Mature-transcript representation generated from the final layer of RNA-FM using length-weighted token pooling.",
-    "n_genes": 19976,
-    "n_dims": 640,
+    "community_contribution": false,
     "coverage_pct": 99.4,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/rnafm_full_transcript",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/rnafm_full_transcript",
+    "description": "Mature-transcript representation generated from the final layer of RNA-FM using length-weighted token pooling.",
+    "id": "rnafm_full_transcript",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/rnafm_full_transcript/metadata.json",
+    "modality": "RNA language model / mature mRNA transcript",
+    "n_dims": 640,
+    "n_genes": 19976,
+    "name": "rnafm_full_transcript_v1_1",
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+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "scfoundation_gene_pos",
-    "name": "scFoundation-gene-pos-v1.1",
+    "algorithm": "see package metadata",
     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "single_cell_expression_foundation_model / learned gene identity-position embedding",
-    "algorithm": "see package metadata",
-    "description": "scFoundation-gene-pos-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19062,
-    "n_dims": 768,
+    "community_contribution": false,
     "coverage_pct": 94.85,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/scfoundation_gene_pos",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scfoundation_gene_pos",
+    "description": "scFoundation-gene-pos-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "scfoundation_gene_pos",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scfoundation_gene_pos/metadata.json",
+    "modality": "single_cell_expression_foundation_model / learned gene identity-position embedding",
+    "n_dims": 768,
+    "n_genes": 19062,
+    "name": "scFoundation-gene-pos-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scfoundation_gene_pos",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "scgpt_whole_human",
-    "name": "scGPT-whole-human-v1.1",
+    "algorithm": "see package metadata",
     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "single_cell_expression_foundation_model",
-    "algorithm": "see package metadata",
-    "description": "scGPT-whole-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19280,
-    "n_dims": 512,
+    "community_contribution": false,
     "coverage_pct": 95.93,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/scgpt_whole_human",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_whole_human",
+    "description": "scGPT-whole-human-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "scgpt_whole_human",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_whole_human/metadata.json",
+    "modality": "single_cell_expression_foundation_model",
+    "n_dims": 512,
+    "n_genes": 19280,
+    "name": "scGPT-whole-human-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_whole_human",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "scgpt_pancancer",
-    "name": "scgpt_pancancer_v1_1",
+    "algorithm": "scGPT pan-cancer gene-token embedding",
     "category": "Single-cell",
     "category_source": "manual",
-    "modality": "single-cell transcriptomic foundation model / pan-cancer gene-token embedding",
-    "algorithm": "scGPT pan-cancer gene-token embedding",
-    "description": "Gene-token representation derived from a pan-cancer scGPT single-cell transcriptomic model.",
-    "n_genes": 19071,
-    "n_dims": 512,
+    "community_contribution": false,
     "coverage_pct": 94.89,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/scgpt_pancancer",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_pancancer",
+    "description": "Gene-token representation derived from a pan-cancer scGPT single-cell transcriptomic model.",
+    "id": "scgpt_pancancer",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_pancancer/metadata.json",
+    "modality": "single-cell transcriptomic foundation model / pan-cancer gene-token embedding",
+    "n_dims": 512,
+    "n_genes": 19071,
+    "name": "scgpt_pancancer_v1_1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scgpt_pancancer",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "scprint_medium_v1_5_gene",
-    "name": "scPRINT-medium-v1.5-gene-v1.1",
+    "algorithm": "see package metadata",
     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "single_cell_expression_foundation_model / learned gene-token embedding",
-    "algorithm": "see package metadata",
-    "description": "scPRINT-medium-v1.5-gene-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19995,
-    "n_dims": 256,
+    "community_contribution": false,
     "coverage_pct": 99.49,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/scprint_medium_v1_5_gene",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scprint_medium_v1_5_gene",
+    "description": "scPRINT-medium-v1.5-gene-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "scprint_medium_v1_5_gene",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scprint_medium_v1_5_gene/metadata.json",
+    "modality": "single_cell_expression_foundation_model / learned gene-token embedding",
+    "n_dims": 256,
+    "n_genes": 19995,
+    "name": "scPRINT-medium-v1.5-gene-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/scprint_medium_v1_5_gene",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "spliceai_canonical_splice_site_profile",
-    "name": "SpliceAI-canonical-splice-site-profile-zscore-v1.1",
+    "algorithm": "SpliceAI",
     "category": "Regulatory",
     "category_source": "heuristic",
-    "modality": "splicing sequence model / canonical transcript splice-site profiles",
-    "algorithm": "SpliceAI",
-    "description": "SpliceAI-canonical-splice-site-profile-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 20097,
-    "n_dims": 606,
+    "community_contribution": false,
     "coverage_pct": 100.0,
-    "qc_status": "processed_qc_passed",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/spliceai_canonical_splice_site_profile",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/spliceai_canonical_splice_site_profile",
+    "description": "SpliceAI-canonical-splice-site-profile-zscore-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "spliceai_canonical_splice_site_profile",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/spliceai_canonical_splice_site_profile/metadata.json",
+    "modality": "splicing sequence model / canonical transcript splice-site profiles",
+    "n_dims": 606,
+    "n_genes": 20097,
+    "name": "SpliceAI-canonical-splice-site-profile-zscore-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/spliceai_canonical_splice_site_profile",
+    "qc_status": "processed_qc_passed",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   },
   {
-    "id": "uce_33l",
-    "name": "UCE-33L-v1.1",
+    "algorithm": "see package metadata",
     "category": "Single-cell",
     "category_source": "heuristic",
-    "modality": "single_cell_expression_foundation_model / protein-informed gene-token embedding",
-    "algorithm": "see package metadata",
-    "description": "UCE-33L-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
-    "n_genes": 19082,
-    "n_dims": 1280,
+    "community_contribution": false,
     "coverage_pct": 94.95,
-    "qc_status": "legacy_core_package",
-    "license": "not recorded in package metadata",
-    "zero_vectors": 0,
     "dataset_path": "data/embeddings/uce_33l",
-    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/uce_33l",
+    "description": "UCE-33L-v1.1. Core embedding package from embeddingsSSRF/gene_embeddings.",
+    "id": "uce_33l",
+    "license": "not recorded in package metadata",
     "metadata_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/blob/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/uce_33l/metadata.json",
+    "modality": "single_cell_expression_foundation_model / protein-informed gene-token embedding",
+    "n_dims": 1280,
+    "n_genes": 19082,
+    "name": "UCE-33L-v1.1",
+    "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/uce_33l",
+    "qc_status": "legacy_core_package",
     "source_dataset": "embeddingsSSRF/gene_embeddings",
     "source_revision": "326b257a20e73df337ece40bb82401e277851f5b",
-    "community_contribution": false
+    "zero_vectors": 0
   }
 ]