import torch import torch.nn as nn import torch.nn.functional as F from torch_geometric.nn import GCNConv from torch_geometric.data import Data class MedicalGNN(nn.Module): def __init__(self, in_channels: int, hidden_channels: int = 256): super().__init__() self.conv1 = GCNConv(in_channels, hidden_channels) self.conv2 = GCNConv(hidden_channels, in_channels) self.dropout = nn.Dropout(p=0.3) def forward(self, x: torch.tensor, edge_index: torch.tensor) -> torch.tensor: h = self.conv1(x, edge_index) h = F.relu(h) h = self.dropout(h) h = self.conv2(h, edge_index) return h def get_structural_embeddings(pyg_data: Data, in_channels: int, hidden_channels: int = 256) -> torch.tensor: model = MedicalGNN(in_channels = in_channels, hidden_channels = hidden_channels) model.eval() with torch.no_grad(): structural_embs = model(pyg_data.x, pyg_data.edge_index) print(f"GNN message passing finish: shape={structural_embs.shape}") return structural_embs