--- title: README emoji: 🧬 colorFrom: blue colorTo: green sdk: static pinned: false --- # TabBioMed **TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning** — 94 curated public biomedical tabular datasets with standardized train/validation/test splits or cross-validation folds. 🏆 **Live leaderboard coming soon.** Code: [github.com/AI-sandbox/TabBioMed](https://github.com/AI-sandbox/TabBioMed) ## Datasets ### Clinical & Healthcare (22) - [audiology](https://huggingface.co/datasets/TabBioMed/audiology) - [blood-transfusion-service](https://huggingface.co/datasets/TabBioMed/blood-transfusion-service) - [Cardiovascular-Disease-dataset](https://huggingface.co/datasets/TabBioMed/Cardiovascular-Disease-dataset) - [CDC_Diabetes_Health_Indicators](https://huggingface.co/datasets/TabBioMed/CDC_Diabetes_Health_Indicators) - [dermatology](https://huggingface.co/datasets/TabBioMed/dermatology) - [Diabetes_UCI](https://huggingface.co/datasets/TabBioMed/Diabetes_UCI) - [Diabetic_Retinopathy_Debrecen](https://huggingface.co/datasets/TabBioMed/Diabetic_Retinopathy_Debrecen) - [HeartDisease_UCI](https://huggingface.co/datasets/TabBioMed/HeartDisease_UCI) - [IACCD](https://huggingface.co/datasets/TabBioMed/IACCD) - [ilpd_patient_data](https://huggingface.co/datasets/TabBioMed/ilpd_patient_data) - [lymphography](https://huggingface.co/datasets/TabBioMed/lymphography) - [maternal_health_risk](https://huggingface.co/datasets/TabBioMed/maternal_health_risk) - [MUSIC](https://huggingface.co/datasets/TabBioMed/MUSIC) - [National_Health_and_Nutrition_Health_Survey](https://huggingface.co/datasets/TabBioMed/National_Health_and_Nutrition_Health_Survey) - [Parkinson_Speech](https://huggingface.co/datasets/TabBioMed/Parkinson_Speech) - [PatientCare](https://huggingface.co/datasets/TabBioMed/PatientCare) - [pima_diabetes](https://huggingface.co/datasets/TabBioMed/pima_diabetes) - [sick](https://huggingface.co/datasets/TabBioMed/sick) - [spectf](https://huggingface.co/datasets/TabBioMed/spectf) - [thyroid](https://huggingface.co/datasets/TabBioMed/thyroid) - [VitalDB](https://huggingface.co/datasets/TabBioMed/VitalDB) - [wisconsin-breast-cancer](https://huggingface.co/datasets/TabBioMed/wisconsin-breast-cancer) ### Genomics (14) - [continental_1k](https://huggingface.co/datasets/TabBioMed/continental_1k) - [continental_50k](https://huggingface.co/datasets/TabBioMed/continental_50k) - [continental_50k_missing](https://huggingface.co/datasets/TabBioMed/continental_50k_missing) - [coords_1k](https://huggingface.co/datasets/TabBioMed/coords_1k) - [coords_50k](https://huggingface.co/datasets/TabBioMed/coords_50k) - [dna](https://huggingface.co/datasets/TabBioMed/dna) - [pca_1k](https://huggingface.co/datasets/TabBioMed/pca_1k) - [pca_50k](https://huggingface.co/datasets/TabBioMed/pca_50k) - [sexcheck_chrX_50](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_50) - [sexcheck_chrX_500](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_500) - [sexcheck_chrX_50k](https://huggingface.co/datasets/TabBioMed/sexcheck_chrX_50k) - [subpop_1000_consec](https://huggingface.co/datasets/TabBioMed/subpop_1000_consec) - [subpop_50k](https://huggingface.co/datasets/TabBioMed/subpop_50k) - [vep_pathogenic_coding](https://huggingface.co/datasets/TabBioMed/vep_pathogenic_coding) ### Drug Discovery (13) - [bioresponse](https://huggingface.co/datasets/TabBioMed/bioresponse) - [ESOL](https://huggingface.co/datasets/TabBioMed/ESOL) - [HIV](https://huggingface.co/datasets/TabBioMed/HIV) - [QM8_E1-CC2](https://huggingface.co/datasets/TabBioMed/QM8_E1-CC2) - [QM8_f1-CC2](https://huggingface.co/datasets/TabBioMed/QM8_f1-CC2) - [QM9_g298](https://huggingface.co/datasets/TabBioMed/QM9_g298) - [QM9_gap](https://huggingface.co/datasets/TabBioMed/QM9_gap) - [QSAR_biodegradation](https://huggingface.co/datasets/TabBioMed/QSAR_biodegradation) - [SIDER_gastro](https://huggingface.co/datasets/TabBioMed/SIDER_gastro) - [SIDER_nervous](https://huggingface.co/datasets/TabBioMed/SIDER_nervous) - [Tox21_NRAhR](https://huggingface.co/datasets/TabBioMed/Tox21_NRAhR) - [Tox21_NRER](https://huggingface.co/datasets/TabBioMed/Tox21_NRER) - [Tox21_SRMMP](https://huggingface.co/datasets/TabBioMed/Tox21_SRMMP) ### Proteomics (11) - [avida_hil6_onehot](https://huggingface.co/datasets/TabBioMed/avida_hil6_onehot) - [avida_htnfa_3mer](https://huggingface.co/datasets/TabBioMed/avida_htnfa_3mer) - [avida_htnfa_esm2](https://huggingface.co/datasets/TabBioMed/avida_htnfa_esm2) - [avida_htnfa_onehot](https://huggingface.co/datasets/TabBioMed/avida_htnfa_onehot) - [avida_sarscov2_3mer](https://huggingface.co/datasets/TabBioMed/avida_sarscov2_3mer) - [cptac_histology](https://huggingface.co/datasets/TabBioMed/cptac_histology) - [ecoli](https://huggingface.co/datasets/TabBioMed/ecoli) - [proteinea_solubility](https://huggingface.co/datasets/TabBioMed/proteinea_solubility) - [true_betalactamase_unique](https://huggingface.co/datasets/TabBioMed/true_betalactamase_unique) - [true_fluorescence](https://huggingface.co/datasets/TabBioMed/true_fluorescence) - [true_melting_point](https://huggingface.co/datasets/TabBioMed/true_melting_point) ### Metabolomics (10) - [Gum1_s](https://huggingface.co/datasets/TabBioMed/Gum1_s) - [MTBLS136](https://huggingface.co/datasets/TabBioMed/MTBLS136) - [MTBLS161](https://huggingface.co/datasets/TabBioMed/MTBLS161) - [MTBLS404](https://huggingface.co/datasets/TabBioMed/MTBLS404) - [Noc_s](https://huggingface.co/datasets/TabBioMed/Noc_s) - [PT-Mush21](https://huggingface.co/datasets/TabBioMed/PT-Mush21) - [ST000369](https://huggingface.co/datasets/TabBioMed/ST000369) - [ST000496](https://huggingface.co/datasets/TabBioMed/ST000496) - [ST001000](https://huggingface.co/datasets/TabBioMed/ST001000) - [ST001047](https://huggingface.co/datasets/TabBioMed/ST001047) ### Single-cell (10) - [hnoca_cells30](https://huggingface.co/datasets/TabBioMed/hnoca_cells30) - [sc_gastrulation_stage](https://huggingface.co/datasets/TabBioMed/sc_gastrulation_stage) - [sc_muraro_celltype](https://huggingface.co/datasets/TabBioMed/sc_muraro_celltype) - [sc_muris_age](https://huggingface.co/datasets/TabBioMed/sc_muris_age) - [sc_muris_celltype](https://huggingface.co/datasets/TabBioMed/sc_muris_celltype) - [tahoe_batch_integration_14plates](https://huggingface.co/datasets/TabBioMed/tahoe_batch_integration_14plates) - [tahoe_cell_name_1000](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_1000) - [tahoe_cell_name_500](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_500) - [tahoe_cell_name_5000](https://huggingface.co/datasets/TabBioMed/tahoe_cell_name_5000) - [tahoe_g2m_score](https://huggingface.co/datasets/TabBioMed/tahoe_g2m_score) ### Transcriptomics (9) - [ALLAML](https://huggingface.co/datasets/TabBioMed/ALLAML) - [CLL_SUB_111](https://huggingface.co/datasets/TabBioMed/CLL_SUB_111) - [GLI_85](https://huggingface.co/datasets/TabBioMed/GLI_85) - [GLIOMA](https://huggingface.co/datasets/TabBioMed/GLIOMA) - [lung](https://huggingface.co/datasets/TabBioMed/lung) - [metabric_grade](https://huggingface.co/datasets/TabBioMed/metabric_grade) - [Prostate_GE](https://huggingface.co/datasets/TabBioMed/Prostate_GE) - [SMK_CAN_187](https://huggingface.co/datasets/TabBioMed/SMK_CAN_187) - [TOX_171](https://huggingface.co/datasets/TabBioMed/TOX_171) ### Systems Biology (5) - [MultiOmics_GS-BRCA](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-BRCA) - [MultiOmics_GS-COAD](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-COAD) - [MultiOmics_GS-GBM](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-GBM) - [MultiOmics_GS-LGG](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-LGG) - [MultiOmics_GS-OV](https://huggingface.co/datasets/TabBioMed/MultiOmics_GS-OV)