{"title":"Transcriptomes Explorer","assemblySummary":[{"Species":"Species 01","Components evaluated":"23,279","Components with >=1 ORF":"14,400","Predicted proteins":"16,840","Components without ORF":"8,879","Transcripts with multiple ORFs":"2,016"},{"Species":"Species 02","Components evaluated":"24,134","Components with >=1 ORF":"16,659","Predicted proteins":"18,805","Components without ORF":"7,475","Transcripts with multiple ORFs":"1,509"},{"Species":"Species 03","Components evaluated":"25,391","Components with >=1 ORF":"15,937","Predicted proteins":"17,419","Components without ORF":"9,454","Transcripts with multiple ORFs":"1,348"}],"annotationExamples":{"Species 01":[{"Approach":"Classical","Tool / result":"EggNOG-mapper hit","Database or type":"EggNOG","Proteins":"12,211","Genes":"11,152","Protein -> gene":"DN10000_c0_g1_i1.p1 -> DN10000_c0_g1","Example annotation":"136037.KDR10189","Description / evidence":"Homolog of PPIL4; associated with protein binding and folding."},{"Approach":"Classical","Tool / result":"EggNOG-mapper OG","Database or type":"EggNOG OG","Proteins":"12,211","Genes":"11,152","Protein -> gene":"same protein","Example annotation":"3SFPY@50557|Insecta","Description / evidence":"Taxonomic orthologous group from Insecta."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"GO","Proteins":"10,163","Genes":"9,414","Protein -> gene":"same protein","Example annotation":"GO:0000375","Description / evidence":"RNA splicing via transesterification reactions."},{"Approach":"Classical","Tool / result":"HMMER","Database or type":"Pfam","Proteins":"11,460","Genes":"10,667","Protein -> gene":"same protein","Example annotation":"PF00076.29","Description / evidence":"RNA recognition motif."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"EC","Proteins":"2,927","Genes":"2,745","Protein -> gene":"same protein","Example annotation":"EC 5.2.1.8","Description / evidence":"Peptidyl-prolyl cis-trans isomerase."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"KEGG KO","Proteins":"8,373","Genes":"7,802","Protein -> gene":"same protein","Example annotation":"K09517","Description / evidence":"DnaJ homolog subfamily B member 11."},{"Approach":"Classical","Tool / result":"KofamScan","Database or type":"KEGG KO","Proteins":"6,778","Genes":"6,479","Protein -> gene":"same protein","Example annotation":"K12735","Description / evidence":"Peptidyl-prolyl cis-trans isomerase-like 4."},{"Approach":"Protein language model","Tool / result":"ESM2-150M Molecular Function","Database or type":"Predicted GO","Proteins":"16,840","Genes":"14,400","Protein -> gene":"DN363_c0_g2_i6.p1 -> DN363_c0_g2","Example annotation":"GO:0008092","Description / evidence":"Cytoskeletal protein binding; score 1.000."},{"Approach":"Protein language model","Tool / result":"ESMC-600M Protein Function","Database or type":"Predicted GO","Proteins":"16,840","Genes":"14,400","Protein -> gene":"DN2264_c0_g1_i1.p1 -> DN2264_c0_g1","Example annotation":"GO:0005634","Description / evidence":"Nucleus; score 1.000."},{"Approach":"Protein language model","Tool / result":"ESM localization","Database or type":"Five localization classes","Proteins":"16,840","Genes":"14,400","Protein -> gene":"DN10897_c0_g1_i24.p1 -> DN10897_c0_g1","Example annotation":"Other Proteins","Description / evidence":"Residual category for localizations outside the four specific classes."}],"Species 02":[{"Approach":"Classical","Tool / result":"EggNOG-mapper hit","Database or type":"EggNOG","Proteins":"11,305","Genes":"10,922","Protein -> gene":"DN10002_c0_g1_i4.p1 -> DN10002_c0_g1","Example annotation":"136037.KDR23397","Description / evidence":"Homolog of SOBP, sine oculis-binding protein."},{"Approach":"Classical","Tool / result":"EggNOG-mapper OG","Database or type":"EggNOG OG","Proteins":"11,305","Genes":"10,922","Protein -> gene":"same protein","Example annotation":"3SM3J@50557|Insecta","Description / evidence":"Taxonomic orthologous group from Insecta."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"GO","Proteins":"9,462","Genes":"9,206","Protein -> gene":"same protein","Example annotation":"GO:0001654","Description / evidence":"Eye development."},{"Approach":"Classical","Tool / result":"HMMER","Database or type":"Pfam","Proteins":"13,682","Genes":"12,596","Protein -> gene":"DN10002_c1_g1_i1.p1 -> DN10002_c1_g1","Example annotation":"PF02847.24","Description / evidence":"MA3 domain."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"EC","Proteins":"2,746","Genes":"2,671","Protein -> gene":"DN10018_c0_g1_i1.p1 -> DN10018_c0_g1","Example annotation":"EC 2.3.2.27","Description / evidence":"EC transferred by orthology; the protein is described as zinc-ion binding."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"KEGG KO","Proteins":"7,727","Genes":"7,548","Protein -> gene":"DN10002_c1_g1_i1.p1 -> DN10002_c1_g1","Example annotation":"K13100","Description / evidence":"Pre-mRNA-splicing factor CWC22."},{"Approach":"Classical","Tool / result":"KofamScan","Database or type":"KEGG KO","Proteins":"7,365","Genes":"7,189","Protein -> gene":"same protein","Example annotation":"K13100","Description / evidence":"Same assignment independently supported by a profile HMM."},{"Approach":"Protein language model","Tool / result":"ESM2-150M Molecular Function","Database or type":"Predicted GO","Proteins":"18,805","Genes":"16,659","Protein -> gene":"DN10325_c0_g1_i1.p1 -> DN10325_c0_g1","Example annotation":"GO:0003824","Description / evidence":"Macromolecule metabolic process; score 1.000."},{"Approach":"Protein language model","Tool / result":"ESMC-300M Protein Function","Database or type":"Predicted GO","Proteins":"18,805","Genes":"16,659","Protein -> gene":"DN10002_c1_g1_i1.p1 -> DN10002_c1_g1","Example annotation":"GO:0016070","Description / evidence":"Localization class other; score 0.998804."},{"Approach":"Protein language model","Tool / result":"ESMC-600M Protein Function","Database or type":"Predicted GO","Proteins":"18,805","Genes":"16,659","Protein -> gene":"same protein","Example annotation":"GO:0043170","Description / evidence":"Macromolecule metabolic process."},{"Approach":"Protein language model","Tool / result":"ESM localization","Database or type":"Five localization classes","Proteins":"18,805","Genes":"16,659","Protein -> gene":"DN18257_c0_g1_i1.p1 -> DN18257_c0_g1","Example annotation":"Other Proteins","Description / evidence":"Residual category for localizations outside the four specific classes."}],"Species 03":[{"Approach":"Classical","Tool / result":"EggNOG-mapper hit","Database or type":"EggNOG","Proteins":"12,469","Genes":"11,885","Protein -> gene":"DN0_c1_g1_i3.p1 -> DN0_c1_g1","Example annotation":"7897.ENSLACP00000012527","Description / evidence":"Homolog of reverse transcriptase."},{"Approach":"Classical","Tool / result":"EggNOG-mapper OG","Database or type":"EggNOG OG","Proteins":"12,469","Genes":"11,885","Protein -> gene":"same protein","Example annotation":"49MAN@7742|Vertebrata","Description / evidence":"Taxonomic orthologous group from Vertebrata."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"GO","Proteins":"10,609","Genes":"10,167","Protein -> gene":"DN0_c2_g1_i2.p1 -> DN0_c2_g1","Example annotation":"GO:0001501","Description / evidence":"Skeletal system development."},{"Approach":"Classical","Tool / result":"HMMER","Database or type":"Pfam","Proteins":"11,562","Genes":"11,083","Protein -> gene":"DN0_c1_g1_i3.p1 -> DN0_c1_g1","Example annotation":"PF00078.33","Description / evidence":"Reverse transcriptase domain."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"EC","Proteins":"2,957","Genes":"2,851","Protein -> gene":"DN0_c2_g1_i2.p1 -> DN0_c2_g1","Example annotation":"EC 3.1.3.25","Description / evidence":"3'-nucleotidase activity."},{"Approach":"Classical","Tool / result":"EggNOG-mapper","Database or type":"KEGG KO","Proteins":"8,683","Genes":"8,337","Protein -> gene":"same protein","Example annotation":"K15759","Description / evidence":"Golgi-resident PAP phosphatase."},{"Approach":"Classical","Tool / result":"KofamScan","Database or type":"KEGG KO","Proteins":"6,555","Genes":"6,382","Protein -> gene":"same protein","Example annotation":"K15759","Description / evidence":"Same assignment supported by a profile HMM."},{"Approach":"Protein language model","Tool / result":"ESM2-150M Molecular Function","Database or type":"Predicted GO","Proteins":"17,419","Genes":"15,937","Protein -> gene":"DN1390_c2_g2_i1.p1 -> DN1390_c2_g2","Example annotation":"GO:0008092","Description / evidence":"Cytoskeletal protein binding; score 1.000."},{"Approach":"Protein language model","Tool / result":"ESMC-600M Protein Function","Database or type":"Predicted GO","Proteins":"17,419","Genes":"15,937","Protein -> gene":"DN221_c4_g2_i1.p1 -> DN221_c4_g2","Example annotation":"GO:0005634","Description / evidence":"Nucleus; score 1.000."},{"Approach":"Protein language model","Tool / result":"ESM localization","Database or type":"Five localization classes","Proteins":"17,419","Genes":"15,937","Protein -> gene":"DN22315_c0_g1_i1.p1 -> DN22315_c0_g1","Example annotation":"Other Proteins","Description / evidence":"Residual category for localizations outside the four specific classes."}]},"species":[{"label":"Species 01","slug":"species01","genes":23279,"proteins":16840,"contrasts":21,"samples":30},{"label":"Species 02","slug":"species02","genes":24134,"proteins":18805,"contrasts":17,"samples":25},{"label":"Species 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