"""Trajectory-guided protein–nucleic-acid engineering."""

from casmd.engineering.design import (
    audit_truncation,
    compare_variants,
    rank_mutation_candidates,
    select_mutation_set,
)
from casmd.engineering.fingerprint import aggregate_contacts
from casmd.engineering.io import build_design_report, load_design_report
from casmd.engineering.models import (
    ContactObservation,
    DesignReport,
    EngineeringConfig,
    RegionObjective,
    RegionSpec,
    ResidueKey,
    TruncationSpec,
)

__all__ = [
    "ContactObservation",
    "DesignReport",
    "EngineeringConfig",
    "RegionObjective",
    "RegionSpec",
    "ResidueKey",
    "TruncationSpec",
    "aggregate_contacts",
    "audit_truncation",
    "build_design_report",
    "compare_variants",
    "load_design_report",
    "rank_mutation_candidates",
    "select_mutation_set",
]