Instructions to use AI4PD/REXzyme with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use AI4PD/REXzyme with Transformers:
# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForSeq2SeqLM tokenizer = AutoTokenizer.from_pretrained("AI4PD/REXzyme") model = AutoModelForSeq2SeqLM.from_pretrained("AI4PD/REXzyme", device_map="auto") - Notebooks
- Google Colab
- Kaggle
Update README.md
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README.md
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- **General descriptors**
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| Method | Natural | Generated <sup>[1]</sup>
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| :--- | :----: | ---: |
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| **IUPRED3 (ordered)** | 99.9% | 99.9% |
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| **ESMFold (avg. plddt)** | 85.03 | 79.82 |
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| Method | [ProteInfer](https://google-research.github.io/proteinfer/) | ProteInfer | [CLEAN](https://www.science.org/doi/10.1126/science.adf2465) | CLEAN |
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| Method | Natural | Generated | Natural | Generated |
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| :--- | :----: | ---: |
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| **EC: Level 1** | 81 % | 80 % | 80 % | 79 % |
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| **EC: Level 2** | 78 % | 77 % | 79 % | 78 % |
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| **EC: Level 3** | 76 % | 75 % | 78 % | 77 % |
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<br/><br/>
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- **General descriptors**
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| Method | Natural | Generated <sup>[1]</sup> |
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| 106 |
| :--- | :----: | ---: |
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| **IUPRED3 (ordered)** | 99.9% | 99.9% |
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| 108 |
| **ESMFold (avg. plddt)** | 85.03 | 79.82 |
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| Method | [ProteInfer](https://google-research.github.io/proteinfer/) | ProteInfer | [CLEAN](https://www.science.org/doi/10.1126/science.adf2465) | CLEAN |
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| Method | Natural | Generated | Natural | Generated |
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| 118 |
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| :--- | :----: | ---: | :----: | ---: |
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| 119 |
| **EC: Level 1** | 81 % | 80 % | 80 % | 79 % |
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| **EC: Level 2** | 78 % | 77 % | 79 % | 78 % |
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| **EC: Level 3** | 76 % | 75 % | 78 % | 77 % |
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