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Cite every source cohort, note LTS4 supervision

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@@ -369,26 +369,92 @@ StandardScaler + logistic-regression probe as described above.
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  weights.
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  - **Hardware timings** are wall-clock measurements on specific GPUs.
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- ## Licence
 
 
 
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- Released `cc-by-nc-sa-4.0`. Derived from public cohorts: BACH/ICIAR 2018, BreakHis, BRACS,
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- TCGA-BRCA, PanNuke, NuCLS and
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- [SPIDER-breast](https://huggingface.co/datasets/histai/SPIDER-breast), which is
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- `cc-by-nc-4.0`, research use only:
 
 
 
 
 
 
 
 
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  ```bibtex
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  @article{nechaev2025spider,
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- title = {SPIDER: A Comprehensive Multi-Organ Supervised Pathology Dataset and Baseline Models},
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- author = {Nechaev, Dmitry and Pchelnikov, Alexey and Ivanova, Ekaterina},
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- year = {2025},
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- eprint = {2503.02876},
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- archivePrefix = {arXiv}
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  }
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  ```
 
 
 
 
 
 
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  `labels/tcga_brca_clinical.tsv` is the open-access GDC clinical export, redistributed under
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  TCGA's open-access terms. The source cohorts keep their own licences, so cite their papers
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  alongside GrapHist.
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- This work was done by **Mahbod Tajdini** and **Tomás Gadea Alcaide** at
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  [LTS4, EPFL](https://www.epfl.ch/labs/lts4/).
 
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  weights.
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  - **Hardware timings** are wall-clock measurements on specific GPUs.
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+ ## Datasets used
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+
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+ This release is built from seven public cohorts. If you use it, please cite GrapHist **and**
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+ the source cohort(s) your work touches.
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+ | Cohort | Used for | Source |
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+ |---|---|---|
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+ | **TCGA-BRCA** | pre-training (11.1 M graphs), slide-level evaluation, survival | [GDC Data Portal](https://portal.gdc.cancer.gov/) |
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+ | **BACH** (ICIAR 2018) | slide-level subtyping, homophily | [Grand Challenge](https://iciar2018-challenge.grand-challenge.org/) |
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+ | **BRACS** | slide-level subtyping, homophily | [bracs.icar.cnr.it](https://www.bracs.icar.cnr.it/) |
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+ | **BreakHis** | slide-level subtyping, homophily | [P&D Lab, UFPR](https://web.inf.ufpr.br/vri/databases/breast-cancer-histopathological-database-breakhis/) |
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+ | **NuCLS** | cell-type identification, homophily | [NuCLS](https://sites.google.com/view/nucls/home) |
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+ | **PanNuke** | cell-type identification, homophily | [TIA Centre, Warwick](https://warwick.ac.uk/fac/sci/dcs/research/tia/data/pannuke/) |
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+ | **SPIDER-breast** | patch-level subtyping | [histai/SPIDER-breast](https://huggingface.co/datasets/histai/SPIDER-breast) |
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+
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+ <details>
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+ <summary>BibTeX for the source cohorts</summary>
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  ```bibtex
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+ @article{weinstein2013cancer,
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+ title={The cancer genome atlas pan-cancer analysis project},
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+ author={Weinstein, John N and Collisson, Eric A and Mills, Gordon B and Shaw, Kenna R and
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+ Ozenberger, Brad A and Ellrott, Kyle and Shmulevich, Ilya and Sander, Chris and
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+ Stuart, Joshua M},
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+ journal={Nature Genetics}, volume={45}, number={10}, pages={1113--1120}, year={2013},
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+ publisher={Nature Publishing Group}
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+ }
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+
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+ @article{aresta2019bach,
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+ title={{BACH}: Grand challenge on breast cancer histology images},
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+ author={Aresta, Guilherme and Ara{\'u}jo, Teresa and Kwok, Scotty and
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+ Chennamsetty, Sai Saketh and Safwan, Mohammed and Alex, Varghese and others},
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+ journal={Medical Image Analysis}, volume={56}, pages={122--139}, year={2019},
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+ publisher={Elsevier}
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+ }
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+
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+ @article{brancati2022bracs,
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+ title={{BRACS}: A Dataset for BReAst Carcinoma Subtyping in {H\&E} Histology Images},
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+ author={Brancati, Nadia and Anniciello, Anna Maria and Pati, Pushpak and Riccio, Daniel and
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+ Scognamiglio, Giosu{\`e} and Jaume, Guillaume and De Pietro, Giuseppe and
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+ Di Bonito, Maurizio and Foncubierta, Antonio and Botti, Gerardo and others},
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+ journal={Database}, volume={2022}, pages={baac093}, year={2022},
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+ publisher={Oxford University Press UK}
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+ }
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+
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+ @article{spanhol2015dataset,
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+ title={A dataset for breast cancer histopathological image classification},
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+ author={Spanhol, Fabio A and Oliveira, Luiz S and Petitjean, Caroline and Heutte, Laurent},
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+ journal={IEEE Transactions on Biomedical Engineering}, volume={63}, number={7},
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+ pages={1455--1462}, year={2015}, publisher={IEEE}
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+ }
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+
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+ @article{amgad2022nucls,
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+ title={{NuCLS}: A scalable crowdsourcing approach and dataset for nucleus classification and
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+ segmentation in breast cancer},
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+ author={Amgad, Mohamed and Atteya, Lamees A and Hussein, Hagar and Mohammed, Kareem Hosny and
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+ Hafiz, Ehab and Elsebaie, Maha AT and Alhusseiny, Ahmed M and
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+ AlMoslemany, Mohamed Atef and Elmatboly, Abdelmagid M and Pappalardo, Philip A and others},
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+ journal={GigaScience}, volume={11}, pages={giac037}, year={2022},
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+ publisher={Oxford University Press}
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+ }
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+
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+ @article{gamper2020pannuke,
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+ title={{PanNuke} dataset extension, insights and baselines},
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+ author={Gamper, Jevgenij and Koohbanani, Navid Alemi and Benes, Ksenija and Graham, Simon and
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+ Jahanifar, Mostafa and Khurram, Syed Ali and Azam, Ayesha and Hewitt, Katherine and
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+ Rajpoot, Nasir},
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+ journal={arXiv preprint arXiv:2003.10778}, year={2020}
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+ }
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+
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  @article{nechaev2025spider,
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+ title={{SPIDER}: A Comprehensive Multi-Organ Supervised Pathology Dataset and Baseline Models},
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+ author={Nechaev, Dmitry and Pchelnikov, Alexey and Ivanova, Ekaterina},
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+ year={2025}, eprint={2503.02876}, archivePrefix={arXiv}, primaryClass={cs.CV}
 
 
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  }
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  ```
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+ </details>
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+
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+ ## Licence
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+
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+ Released `cc-by-nc-sa-4.0`. SPIDER-breast is `cc-by-nc-4.0`, research use only, and those
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+ terms travel with the derived graphs:
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  `labels/tcga_brca_clinical.tsv` is the open-access GDC clinical export, redistributed under
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  TCGA's open-access terms. The source cohorts keep their own licences, so cite their papers
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  alongside GrapHist.
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+ This work was done by **Mahbod Tajdini** and **Tomás Gadea Alcaide**, supervised by members of
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  [LTS4, EPFL](https://www.epfl.ch/labs/lts4/).