Replace hardcoded paths with placeholders: compute_pooled_edge_homophily.py
Browse files
studies/homophily/paper_metrics/compute_pooled_edge_homophily.py
CHANGED
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@@ -5,7 +5,7 @@ paper's Appendix "Homophily of the Cell Graphs" (the "pooled edge homophily 0.76
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This value is NOT in tail_metrics.json (which stores only the per-graph macro-mean).
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It is recomputed here from the raw .pt graphs using the bundle's own pinned functions
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(homophily_metrics.edge_homophily + _strip_virtual_node, main_fat_tail.discover_graphs),
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so it matches the codebase exactly. Run on
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"""
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import json, os, sys
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import torch
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@@ -58,7 +58,7 @@ meta = {
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"recomputed from input_data/*.pt with the bundle's edge_homophily. "
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"Backs the paper's Appendix 'pooled edge homophily 0.76-0.83' (labelled datasets). "
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"Differs from tail_metrics.json's per-graph macro-mean (0.75-0.82).",
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"_reproduce": "python paper_metrics/compute_pooled_edge_homophily.py (mp_graph env, on
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"_code_commit": "97e65d9 (homophily-heterophily-metrics)",
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"per_dataset": out,
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}
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This value is NOT in tail_metrics.json (which stores only the per-graph macro-mean).
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It is recomputed here from the raw .pt graphs using the bundle's own pinned functions
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(homophily_metrics.edge_homophily + _strip_virtual_node, main_fat_tail.discover_graphs),
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+
so it matches the codebase exactly. Run on the compute cluster in the mp_graph env.
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"""
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import json, os, sys
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import torch
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"recomputed from input_data/*.pt with the bundle's edge_homophily. "
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"Backs the paper's Appendix 'pooled edge homophily 0.76-0.83' (labelled datasets). "
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"Differs from tail_metrics.json's per-graph macro-mean (0.75-0.82).",
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+
"_reproduce": "python paper_metrics/compute_pooled_edge_homophily.py (mp_graph env, on the compute cluster)",
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"_code_commit": "97e65d9 (homophily-heterophily-metrics)",
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"per_dataset": out,
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}
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