File size: 1,197 Bytes
46d924d
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
{
 "encoder": "esm3",
 "family": "patched",
 "target": "esm3_inproc",
 "weights": "pretrained",
 "rule": "final trunk residue embeddings, sequence and structure tracks",
 "env": "base",
 "checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth",
 "dtype": "bfloat16",
 "n_parameters": 1401735748,
 "inputs_passed": "sequence track: true residues; structure track: VQ-VAE tokens from the real backbone (N, CA, C, O, CB) plus coordinates for geometric attention; function, SASA and secondary-structure tracks at their defaults",
 "patch": "patched/esm3_inproc.py",
 "dataset": "protcompass/confirmation2/labels_v44.h5",
 "date": "2026-09-23 13:22",
 "seconds": 183.8,
 "n_domains": 1316,
 "dim": 1536,
 "row_convention": "row r of residue_fp16.npy is row r of residue/* in labels.h5",
 "health": {
  "n_rows": 1316,
  "dim": 1536,
  "nan_values": 0,
  "all_zero_rows": 0,
  "distinct_rows": 1316,
  "numerical_rank": 1315,
  "max_abs": 9147.5693359375
 },
 "input_audit": {
  "rel_change_jitter_1A": 0.509009407826544,
  "rel_change_coord_swap": 0.4000935921683898,
  "rel_change_seq_shuffle": 0.35550636124077734,
  "rel_change_rigid_motion": 0.0018285819013779668,
  "verdict": "pass"
 }
}