File size: 1,423 Bytes
46d924d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 | {
"encoder": "esm3_seqonly",
"family": "patched",
"target": "esm3_seqonly",
"weights": "pretrained",
"rule": "final trunk residue embeddings, sequence track only; structure track masked, no coordinates",
"env": "base",
"checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth",
"dtype": "bfloat16",
"n_parameters": 1401735748,
"inputs_passed": "sequence track: true residues; structure track: mask token at every position (no coordinates, so no VQ-VAE tokens and no geometric attention input); function, SASA and secondary-structure tracks at their defaults",
"patch": "patched/esm3_seqonly.py (modality ablation of patched/esm3_inproc.py)",
"task": "ec_classification",
"date": "2026-09-25 15:58",
"seconds": 742.0,
"pooling": "masked mean over all residues of the chain",
"manifest": "manifest/ec_classification.csv",
"rows": "stage1 == 1",
"structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)",
"n_per_split": {
"test": 3000,
"train": 6000,
"valid": 1500
},
"health": {
"n_rows": 10500,
"dim": 1536,
"nan_values": 0,
"all_zero_rows": 0,
"distinct_rows": 8868,
"numerical_rank": 1536,
"max_abs": 12116.43359375
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"input_audit": {
"rel_change_jitter_1A": 0.0,
"rel_change_coord_swap": 0.0,
"rel_change_seq_shuffle": 0.27526844623722635,
"rel_change_rigid_motion": 0.0,
"verdict": "pass"
}
}
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