File size: 1,225 Bytes
2f4937b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | {
"encoder": "protbert_bfd",
"family": "hf_plm",
"target": "Rostlab/prot_bert_bfd",
"weights": "pretrained",
"rule": "final residue states, special tokens removed, masked mean over valid residues",
"env": "base",
"checkpoint": "Rostlab/prot_bert_bfd",
"checkpoint_revision": "6c5c8a55a52ff08a664dfd584aa1773f125a0487",
"dtype": "float32",
"hidden_size": 1024,
"n_layers": 30,
"n_parameters": 418881536,
"inputs_passed": "amino-acid sequence only",
"task": "ec_classification",
"date": "2026-09-20 11:40",
"seconds": 75.4,
"pooling": "masked mean over all residues of the chain",
"manifest": "manifest/ec_classification.csv",
"rows": "stage1 == 1",
"structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)",
"n_per_split": {
"test": 3000,
"train": 6000,
"valid": 1500
},
"health": {
"n_rows": 10500,
"dim": 1024,
"nan_values": 0,
"all_zero_rows": 0,
"distinct_rows": 8868,
"numerical_rank": 1023,
"max_abs": 2.1483848094940186
},
"input_audit": {
"rel_change_jitter_1A": 0.0,
"rel_change_coord_swap": 0.0,
"rel_change_seq_shuffle": 0.4072423163663681,
"rel_change_rigid_motion": 0.0,
"verdict": "pass"
}
} |