File size: 1,287 Bytes
2f4937b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 | {
"encoder": "saprot",
"family": "patched",
"target": "saprot_hf",
"weights": "pretrained",
"rule": "final hidden states at the L residue positions of AA+3Di tokens",
"env": "base",
"checkpoint": "westlake-repl/SaProt_650M_AF2",
"checkpoint_revision": "d9b9ad00ef61c0990e611b2b43f2231c7de24b38",
"n_parameters": 651242901,
"inputs_passed": "amino-acid track: real sequence; 3Di track: real tokens from mini3di on the structure; no pLDDT masking",
"patch": "patched/saprot_hf.py",
"task": "ec_classification",
"date": "2026-09-20 12:22",
"seconds": 386.3,
"pooling": "masked mean over all residues of the chain",
"manifest": "manifest/ec_classification.csv",
"rows": "stage1 == 1",
"structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)",
"n_per_split": {
"test": 3000,
"train": 6000,
"valid": 1500
},
"health": {
"n_rows": 10500,
"dim": 1280,
"nan_values": 0,
"all_zero_rows": 0,
"distinct_rows": 10460,
"numerical_rank": 1279,
"max_abs": 1.4501705169677734
},
"input_audit": {
"rel_change_jitter_1A": 0.8705030813272382,
"rel_change_coord_swap": 0.4102216970171252,
"rel_change_seq_shuffle": 0.8413755808217256,
"rel_change_rigid_motion": 0.0,
"verdict": "pass"
}
} |