| { |
| "ec": { |
| "n_proteins": 2242, |
| "n_classes": 7, |
| "cka_mean": 0.2901907196969697, |
| "cka_min": 0.0245, |
| "cka_max": 0.9259, |
| "knn_overlap_mean": 0.19165833333333332, |
| "cka_within_class": 0.3356032258064516, |
| "cka_between_class": 0.2585041800643087, |
| "cka_rand_rand": 0.5348472222222221, |
| "cka_pre_pre": 0.28105111111111114, |
| "cka_rand_pre": 0.21405666666666667, |
| "purity_min": [ |
| 0.2893, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.8021, |
| "Ankh" |
| ], |
| "purity_median": 0.572, |
| "purity_chance": 0.2092, |
| "probe_min": [ |
| 0.3617, |
| "Foldseek" |
| ], |
| "probe_max": [ |
| 0.9367, |
| "ESM2-3B" |
| ], |
| "majority": 0.2979, |
| "distinct_rows_min": 2242, |
| "n_encoders": 33 |
| }, |
| "go_mf": { |
| "n_proteins": 2215, |
| "n_classes": 9, |
| "cka_mean": 0.28753844696969694, |
| "cka_min": 0.0276, |
| "cka_max": 0.946, |
| "knn_overlap_mean": 0.08455378787878787, |
| "cka_within_class": 0.3390004608294931, |
| "cka_between_class": 0.25163086816720254, |
| "cka_rand_rand": 0.533036111111111, |
| "cka_pre_pre": 0.31014888888888886, |
| "cka_rand_pre": 0.22708, |
| "purity_min": [ |
| 0.2587, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.5595, |
| "Ankh" |
| ], |
| "purity_median": 0.3822, |
| "purity_chance": 0.2364, |
| "probe_min": [ |
| 0.3327, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.7079, |
| "ESM2-3B" |
| ], |
| "majority": 0.4447, |
| "distinct_rows_min": 2215, |
| "n_encoders": 33 |
| }, |
| "go_bp": { |
| "n_proteins": 2087, |
| "n_classes": 9, |
| "cka_mean": 0.28662007575757575, |
| "cka_min": 0.0159, |
| "cka_max": 0.9441, |
| "knn_overlap_mean": 0.08429431818181819, |
| "cka_within_class": 0.3330032258064516, |
| "cka_between_class": 0.254256270096463, |
| "cka_rand_rand": 0.5266194444444445, |
| "cka_pre_pre": 0.30315333333333333, |
| "cka_rand_pre": 0.21929666666666667, |
| "purity_min": [ |
| 0.1677, |
| "GearNet-pre" |
| ], |
| "purity_max": [ |
| 0.3666, |
| "Ankh" |
| ], |
| "purity_median": 0.247, |
| "purity_chance": 0.1514, |
| "probe_min": [ |
| 0.1936, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.4859, |
| "ESM2-3B" |
| ], |
| "majority": 0.2918, |
| "distinct_rows_min": 2086, |
| "n_encoders": 33 |
| }, |
| "localisation": { |
| "n_proteins": 2362, |
| "n_classes": 10, |
| "cka_mean": 0.39699090909090906, |
| "cka_min": 0.032, |
| "cka_max": 0.9427, |
| "knn_overlap_mean": 0.0874378787878788, |
| "cka_within_class": 0.44248294930875576, |
| "cka_between_class": 0.3652488745980707, |
| "cka_rand_rand": 0.5738222222222221, |
| "cka_pre_pre": 0.4673933333333334, |
| "cka_rand_pre": 0.3231555555555556, |
| "purity_min": [ |
| 0.1789, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.4673, |
| "ProtT5-XL" |
| ], |
| "purity_median": 0.2877, |
| "purity_chance": 0.1531, |
| "probe_min": [ |
| 0.2748, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.624, |
| "ESM2-3B" |
| ], |
| "majority": 0.2917, |
| "distinct_rows_min": 2362, |
| "n_encoders": 33 |
| }, |
| "homology": { |
| "n_proteins": 2129, |
| "n_classes": 7, |
| "cka_mean": 0.32114697580645163, |
| "cka_min": 0.0226, |
| "cka_max": 0.9257, |
| "knn_overlap_mean": 0.08568306451612903, |
| "cka_within_class": 0.35315070422535216, |
| "cka_between_class": 0.2970593639575972, |
| "cka_rand_rand": 0.5527861111111112, |
| "cka_pre_pre": 0.2702822222222222, |
| "cka_rand_pre": 0.2189444444444445, |
| "purity_min": [ |
| 0.2821, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.7477, |
| "Ankh" |
| ], |
| "purity_median": 0.5939, |
| "purity_chance": 0.1868, |
| "probe_min": [ |
| 0.4016, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.9248, |
| "ESM3" |
| ], |
| "majority": 0.2287, |
| "distinct_rows_min": 2129, |
| "n_encoders": 32 |
| }, |
| "solubility": { |
| "n_proteins": 1999, |
| "n_classes": 2, |
| "cka_mean": 0.35969337121212125, |
| "cka_min": 0.0289, |
| "cka_max": 0.9403, |
| "knn_overlap_mean": 0.06585965909090909, |
| "cka_within_class": 0.39334654377880185, |
| "cka_between_class": 0.3362118971061093, |
| "cka_rand_rand": 0.5395166666666666, |
| "cka_pre_pre": 0.3990777777777777, |
| "cka_rand_pre": 0.25364444444444445, |
| "purity_min": [ |
| 0.571, |
| "Foldseek" |
| ], |
| "purity_max": [ |
| 0.6283, |
| "ProtT5-XL" |
| ], |
| "purity_median": 0.5916, |
| "purity_chance": 0.5759, |
| "probe_min": [ |
| 0.5983, |
| "FoldVision" |
| ], |
| "probe_max": [ |
| 0.6963, |
| "GCPNet-pre" |
| ], |
| "majority": 0.6948, |
| "distinct_rows_min": 1999, |
| "n_encoders": 33 |
| }, |
| "membrane": { |
| "n_proteins": 1999, |
| "n_classes": 2, |
| "cka_mean": 0.3964537878787879, |
| "cka_min": 0.0349, |
| "cka_max": 0.9442, |
| "knn_overlap_mean": 0.09699829545454546, |
| "cka_within_class": 0.4405170506912442, |
| "cka_between_class": 0.3657086816720257, |
| "cka_rand_rand": 0.5688805555555555, |
| "cka_pre_pre": 0.46565111111111096, |
| "cka_rand_pre": 0.32195000000000007, |
| "purity_min": [ |
| 0.6352, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.7621, |
| "Ankh" |
| ], |
| "purity_median": 0.715, |
| "purity_chance": 0.6025, |
| "probe_min": [ |
| 0.6818, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.8254, |
| "ESM2-3B" |
| ], |
| "majority": 0.7264, |
| "distinct_rows_min": 1999, |
| "n_encoders": 33 |
| }, |
| "stability": { |
| "n_proteins": 1998, |
| "n_classes": 4, |
| "cka_mean": 0.48426231060606056, |
| "cka_min": 0.0603, |
| "cka_max": 0.9501, |
| "knn_overlap_mean": 0.1438816287878788, |
| "cka_within_class": 0.473536866359447, |
| "cka_between_class": 0.4917459807073955, |
| "cka_rand_rand": 0.6092388888888888, |
| "cka_pre_pre": 0.4039977777777778, |
| "cka_rand_pre": 0.29677333333333333, |
| "purity_min": [ |
| 0.3938, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.485, |
| "ESM2-150M" |
| ], |
| "purity_median": 0.4544, |
| "purity_chance": 0.25, |
| "probe_min": [ |
| 0.4494, |
| "GearNet-pre" |
| ], |
| "probe_max": [ |
| 0.5375, |
| "Ankh" |
| ], |
| "majority": 0.2538, |
| "distinct_rows_min": 1661, |
| "n_encoders": 33 |
| }, |
| "fluorescence": { |
| "n_proteins": 2000, |
| "n_classes": 4, |
| "cka_mean": 0.2074621212121212, |
| "cka_min": 0.0025, |
| "cka_max": 0.913, |
| "knn_overlap_mean": 0.03474242424242424, |
| "cka_within_class": 0.2824175115207373, |
| "cka_between_class": 0.15516205787781348, |
| "cka_rand_rand": 0.3454083333333333, |
| "cka_pre_pre": 0.3517044444444445, |
| "cka_rand_pre": 0.24285888888888887, |
| "purity_min": [ |
| 0.2757, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.3459, |
| "ProstT5" |
| ], |
| "purity_median": 0.3059, |
| "purity_chance": 0.25, |
| "probe_min": [ |
| 0.3155, |
| "FoldVision" |
| ], |
| "probe_max": [ |
| 0.46, |
| "Ankh" |
| ], |
| "majority": 0.25, |
| "distinct_rows_min": 2000, |
| "n_encoders": 33 |
| }, |
| "affinity": { |
| "n_proteins": 1998, |
| "n_classes": 4, |
| "cka_mean": 0.6178223484848484, |
| "cka_min": 0.1594, |
| "cka_max": 0.9446, |
| "knn_overlap_mean": 0.33502765151515157, |
| "cka_within_class": 0.5919341013824885, |
| "cka_between_class": 0.6358858520900322, |
| "cka_rand_rand": 0.752163888888889, |
| "cka_pre_pre": 0.43216222222222217, |
| "cka_rand_pre": 0.4834655555555556, |
| "purity_min": [ |
| 0.4818, |
| "IPA-pre" |
| ], |
| "purity_max": [ |
| 0.5956, |
| "ESM2-650M" |
| ], |
| "purity_median": 0.551, |
| "purity_chance": 0.25, |
| "probe_min": [ |
| 0.513, |
| "Foldseek" |
| ], |
| "probe_max": [ |
| 0.6722, |
| "ProstT5" |
| ], |
| "majority": 0.2503, |
| "distinct_rows_min": 1090, |
| "n_encoders": 33 |
| } |
| } |
