ProtCompass_Embeddings / extract /ab_modality /encoder_input_audit_ab_shuf.csv
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encoder,dataset,weights,n_proteins,rel_change_jitter_1A,rel_change_coord_swap,rel_change_seq_shuffle,rel_change_rigid_motion,uses_coordinates,uses_residue_identity,invariant,declared_coordinates,declared_residue_identity,verdict,problems,seconds,inputs_passed
saprot_shuf3di,stage1,pretrained,32,0.4398886417045243,0.322458235413735,0.2415372060817858,0.0,True,True,True,True,True,pass,,11.1,amino-acid track: real sequence; 3Di track: real mini3di tokens permuted within the protein (seed = first 8 bytes of sha256(protein id)); no pLDDT masking
saprot_shuf3di,probing,pretrained,32,0.359499589559648,0.39349456219719525,0.20794737880529107,0.0,True,True,True,True,True,pass,,12.4,amino-acid track: real sequence; 3Di track: real mini3di tokens permuted within the protein (seed = first 8 bytes of sha256(protein id)); no pLDDT masking