| { |
| "encoder": "esm3", |
| "family": "patched", |
| "target": "esm3_inproc", |
| "weights": "pretrained", |
| "rule": "final trunk residue embeddings, sequence and structure tracks", |
| "env": "base", |
| "checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth", |
| "dtype": "bfloat16", |
| "n_parameters": 1401735748, |
| "inputs_passed": "sequence track: true residues; structure track: VQ-VAE tokens from the real backbone (N, CA, C, O, CB) plus coordinates for geometric attention; function, SASA and secondary-structure tracks at their defaults", |
| "patch": "patched/esm3_inproc.py", |
| "task": "ec_classification", |
| "date": "2026-09-20 12:28", |
| "seconds": 412.3, |
| "pooling": "masked mean over all residues of the chain", |
| "manifest": "manifest/ec_classification.csv", |
| "rows": "stage1 == 1", |
| "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", |
| "n_per_split": { |
| "test": 3000, |
| "train": 6000, |
| "valid": 1500 |
| }, |
| "health": { |
| "n_rows": 10500, |
| "dim": 1536, |
| "nan_values": 0, |
| "all_zero_rows": 0, |
| "distinct_rows": 10499, |
| "numerical_rank": 1536, |
| "max_abs": 9116.4443359375 |
| }, |
| "input_audit": { |
| "rel_change_jitter_1A": 0.3911045424821484, |
| "rel_change_coord_swap": 0.1052052461015038, |
| "rel_change_seq_shuffle": 0.23244728451209695, |
| "rel_change_rigid_motion": 0.0020265780064980155, |
| "verdict": "pass" |
| } |
| } |
|
|
