Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
|
@@ -26,7 +26,7 @@ Checkpoints behind the [CELL-FM CondenSeq demo](https://huggingface.co/spaces/Bo
|
|
| 26 |
| `opencell/vae.bin` | Image VAE at 256x256, the one `opencell/cellfm_vs.bin` was trained against — OpenCell-finetuned, so not interchangeable with `hpa/vae.bin` despite the matching shape | `finetune_opencell/vae/checkpoint-50000` |
|
| 27 |
| `opencell/vs_anchor_nucleus.npy` | The nucleus every OpenCell generation is conditioned on: `(1, 256, 256)` float32 in [-1, 1]. Gene ATG7, crop `CID001813_FID00035838_proj_11` — bit-for-bit the conditioning channel of the published offline run | built |
|
| 28 |
| `opencell/vs_genes.csv` | OpenCell's 1,311 genes: name, protein name, UniProt accession, Ensembl id, localization annotation and sequence. The metadata table minus its image paths | built |
|
| 29 |
-
| `opencell/vs_reference_cells.npz` |
|
| 30 |
| `hpa/anchor_cell.npy` | The fixed cell every NLS-screening image is conditioned on: `(3, 256, 256)` float32 in [-1, 1], channels nucleus, ER, microtubules. HPA gene H3C13, cell crop `1194_B2_2_4` | built |
|
| 31 |
| `hpa/anchor_masks.npz` | Two 256x256 boolean masks over that cell, `nucleus` and `cell`; cytoplasm is `cell & ~nucleus` | built |
|
| 32 |
| `hpa/pls_anchor_nls.npz` | The cell PLS generation conditions on for nuclear signals: `cell` `(3, 512, 512)` nucleus/ER/microtubules and `protein` `(1, 512, 512)`, float32 in [-1, 1]. HPA gene PPM1G (Nucleoplasm), crop `392_B9_1_11` | built |
|
|
|
|
| 26 |
| `opencell/vae.bin` | Image VAE at 256x256, the one `opencell/cellfm_vs.bin` was trained against — OpenCell-finetuned, so not interchangeable with `hpa/vae.bin` despite the matching shape | `finetune_opencell/vae/checkpoint-50000` |
|
| 27 |
| `opencell/vs_anchor_nucleus.npy` | The nucleus every OpenCell generation is conditioned on: `(1, 256, 256)` float32 in [-1, 1]. Gene ATG7, crop `CID001813_FID00035838_proj_11` — bit-for-bit the conditioning channel of the published offline run | built |
|
| 28 |
| `opencell/vs_genes.csv` | OpenCell's 1,311 genes: name, protein name, UniProt accession, Ensembl id, localization annotation and sequence. The metadata table minus its image paths | built |
|
| 29 |
+
| `opencell/vs_reference_cells.npz` | 17 genes spanning distinct compartments, each with its own nucleus and its real protein image, float16 — the ground truth the notebook's generations are shown against | built |
|
| 30 |
| `hpa/anchor_cell.npy` | The fixed cell every NLS-screening image is conditioned on: `(3, 256, 256)` float32 in [-1, 1], channels nucleus, ER, microtubules. HPA gene H3C13, cell crop `1194_B2_2_4` | built |
|
| 31 |
| `hpa/anchor_masks.npz` | Two 256x256 boolean masks over that cell, `nucleus` and `cell`; cytoplasm is `cell & ~nucleus` | built |
|
| 32 |
| `hpa/pls_anchor_nls.npz` | The cell PLS generation conditions on for nuclear signals: `cell` `(3, 512, 512)` nucleus/ER/microtubules and `protein` `(1, 512, 512)`, float32 in [-1, 1]. HPA gene PPM1G (Nucleoplasm), crop `392_B9_1_11` | built |
|