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CIPHER

Feature Extraction
PyTorch
computational-pathology
spatial-proteomics
histopathology
colorectal-cancer
multimodal
Model card Files
xet
 Community
CIPHER
File size: 1,761 Bytes
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{
  "codex_markers": [
    "HOECHST",
    "CD44",
    "FOXP3",
    "CDX2",
    "CD8",
    "p53",
    "GATA3",
    "CD45",
    "T-bet",
    "beta-catenin",
    "HLA-DR",
    "PD-L1",
    "Ki67",
    "CD45RA",
    "CD4",
    "CD21",
    "MUC-1",
    "CD30",
    "CD2",
    "Vimentin",
    "CD20",
    "LAG-3",
    "Na-K-ATPase",
    "CD5",
    "IDO-1",
    "Cytokeratin",
    "CD11b",
    "CD56",
    "aSMA",
    "BCL-2",
    "CD25",
    "Collagen IV",
    "CD11c",
    "PD-1",
    "Granzyme B",
    "EGFR",
    "VISTA",
    "CD15",
    "CD194",
    "ICOS",
    "MMP9",
    "Synaptophysin",
    "CD71",
    "GFAP",
    "CD7",
    "CD3",
    "Chromogranin A",
    "CD163",
    "CD57",
    "CD45RO",
    "CD68",
    "CD31",
    "Podoplanin",
    "CD34",
    "CD38",
    "CD138",
    "MMP12"
  ],
  "orion_markers": [
    "HOECHST",
    "AF1",
    "CD31",
    "CD45",
    "CD68",
    "Argo550",
    "CD4",
    "FOXP3",
    "CD8",
    "CD45RO",
    "CD20",
    "PD-L1",
    "CD3",
    "CD163",
    "E-cadherin",
    "PD-1",
    "Ki67",
    "Cytokeratin",
    "aSMA"
  ],
  "shared_markers": [
    "HOECHST",
    "FOXP3",
    "CD8",
    "CD45",
    "PD-L1",
    "Ki67",
    "CD4",
    "CD20",
    "Cytokeratin",
    "aSMA",
    "PD-1",
    "CD3",
    "CD163",
    "CD45RO",
    "CD68",
    "CD31"
  ],
  "codex_shared_indices": [
    0,
    2,
    4,
    7,
    11,
    12,
    14,
    20,
    25,
    28,
    33,
    45,
    47,
    49,
    50,
    51
  ],
  "orion_shared_indices": [
    0,
    7,
    8,
    3,
    11,
    16,
    6,
    10,
    17,
    18,
    15,
    12,
    13,
    9,
    4,
    2
  ],
  "aliases": {
    "cd3e": "CD3",
    "panck": "Cytokeratin",
    "ecadherin": "E-cadherin",
    "betacatenin": "beta-catenin",
    "hoechst": "HOECHST"
  }
}