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key	type	doi	primary_source	checked
virtualLab	article	10.1038/s41586-025-09442-9	https://doi.org/10.1038/s41586-025-09442-9	2026-09-20
biomni	article	10.1126/science.adz4351	https://doi.org/10.1126/science.adz4351	2026-09-20
crisprgpt	article	10.1038/s41551-025-01463-z	https://doi.org/10.1038/s41551-025-01463-z	2026-09-20
cellvoyager	article	10.1038/s41592-026-03029-6	https://doi.org/10.1038/s41592-026-03029-6	2026-09-20
chemcrow	article	10.1038/s42256-024-00832-8	https://doi.org/10.1038/s42256-024-00832-8	2026-09-20
coscientist	article	10.1038/s41586-023-06792-0	https://doi.org/10.1038/s41586-023-06792-0	2026-09-20
drugassist	article	10.1093/bib/bbae693	https://doi.org/10.1093/bib/bbae693	2026-09-20
peptiverse	article	10.1038/s41467-026-74167-w	https://doi.org/10.1038/s41467-026-74167-w	2026-09-20
ptmmamba	article	10.1038/s41592-025-02656-9	https://doi.org/10.1038/s41592-025-02656-9	2026-09-20
moppit	article	10.1101/2024.07.31.606098	https://doi.org/10.1101/2024.07.31.606098	2026-09-20
pepprclip	article	10.1126/sciadv.adr8638	https://doi.org/10.1126/sciadv.adr8638	2026-09-20
saltpeppr	article	10.1038/s42003-023-05464-z	https://doi.org/10.1038/s42003-023-05464-z	2026-09-20
evobind2	article	10.1038/s42004-025-01601-3	https://doi.org/10.1038/s42004-025-01601-3	2026-09-20
evomultimer	article	10.64898/2026.08.21.746227	https://doi.org/10.64898/2026.08.21.746227	2026-09-20
pepadmet	article	10.1021/acs.jcim.5c02518	https://doi.org/10.1021/acs.jcim.5c02518	2026-09-20
af3	article	10.1038/s41586-024-07487-w	https://doi.org/10.1038/s41586-024-07487-w	2026-09-20
af2	article	10.1038/s41586-021-03819-2	https://doi.org/10.1038/s41586-021-03819-2	2026-09-20
esm2	article	10.1126/science.ade2574	https://doi.org/10.1126/science.ade2574	2026-09-20
proteinmpnn	article	10.1126/science.add2187	https://doi.org/10.1126/science.add2187	2026-09-20
rfdiffusion	article	10.1038/s41586-023-06415-8	https://doi.org/10.1038/s41586-023-06415-8	2026-09-20
bindcraft	article	10.1038/s41586-025-09429-6	https://doi.org/10.1038/s41586-025-09429-6	2026-09-20
gadd	article	10.1038/nchembio.2329	https://doi.org/10.1038/nchembio.2329	2026-09-20
macroglue	article	10.1002/anie.202521678	https://doi.org/10.1002/anie.202521678	2026-09-20
fkbpglue	article	10.1039/d4cb00279b	https://doi.org/10.1039/d4cb00279b	2026-09-20
intrinsicAlpha	article	10.3390/ijms26072936	https://doi.org/10.3390/ijms26072936	2026-09-20
phosphosite	article	10.1093/nar/gku1267	https://doi.org/10.1093/nar/gku1267	2026-09-20
uniprot	article	10.1093/nar/gkae1010	https://doi.org/10.1093/nar/gkae1010	2026-09-20
intact	article	10.1093/nar/gkab1006	https://doi.org/10.1093/nar/gkab1006	2026-09-20
biogrid	article	10.1002/pro.3978	https://doi.org/10.1002/pro.3978	2026-09-20
negatome	article	10.1093/nar/gkt1079	https://doi.org/10.1093/nar/gkt1079	2026-09-20
peptides	article	10.1038/s41573-020-00135-8	https://doi.org/10.1038/s41573-020-00135-8	2026-09-20
guacamol	article	10.1021/acs.jcim.8b00839	https://doi.org/10.1021/acs.jcim.8b00839	2026-09-20
colabfold	article	10.1038/s41592-022-01488-1	https://doi.org/10.1038/s41592-022-01488-1	2026-09-20
bh	article	10.1111/j.2517-6161.1995.tb02031.x	https://doi.org/10.1111/j.2517-6161.1995.tb02031.x	2026-09-20
parego	article	10.1109/TEVC.2005.851274	https://doi.org/10.1109/TEVC.2005.851274	2026-09-20
dscript	article	10.1016/j.cels.2021.08.010	https://doi.org/10.1016/j.cels.2021.08.010	2026-09-20
gat2024discreteflowmatching	inproceedings	10.52202/079017-4239	https://proceedings.neurips.cc/paper_files/paper/2024/hash/f0d629a734b56a642701bba7bc8bb3ed-Abstract-Conference.html	2026-09-20
cbas	inproceedings		https://proceedings.mlr.press/v97/brookes19a.html	2026-09-20
coms	inproceedings		https://proceedings.mlr.press/v139/trabucco21a.html	2026-09-20
designbench	inproceedings		https://proceedings.mlr.press/v162/trabucco22a.html	2026-09-20
mmseqs	article		supplied manuscript	2026-09-20
mogdfm	misc		https://arxiv.org/abs/2505.07086	2026-09-20
allogen	misc		https://arxiv.org/abs/2606.05474	2026-09-20
peptune	misc		https://arxiv.org/abs/2412.17780	2026-09-20
react	misc		https://arxiv.org/abs/2210.03629	2026-09-20
reflexion	misc		https://arxiv.org/abs/2303.11366	2026-09-20
paperqa	misc		https://arxiv.org/abs/2409.13740	2026-09-20
conformal	misc		https://arxiv.org/abs/2107.07511	2026-09-20
biodiscovery	misc		https://arxiv.org/abs/2405.17631	2026-09-20
soapia	misc		supplied manuscript	2026-09-20
td3b	misc		https://huggingface.co/ChatterjeeLab/TD3B	2026-09-20
snooppi	misc	10.57967/hf/10413	https://huggingface.co/datasets/ChatterjeeLab/SNOOPPI	2026-09-20
muse	misc		https://huggingface.co/meta-models/Muse-Glimmer-30B	2026-09-20
pepmlm	article	10.1038/s41587-025-02761-2	https://doi.org/10.1038/s41587-025-02761-2	2026-09-20
lapep	misc		supplied manuscript	2026-09-20
duab	article	10.1038/s41467-025-58872-6	https://doi.org/10.1038/s41467-025-58872-6	2026-09-20
peptune	misc		https://arxiv.org/html/2412.17780v3	2026-09-20
lab_instruments	misc		https://cem.com/peptide-synthesis	2026-09-20
llmcompiler	misc		https://arxiv.org/html/2312.04511v3	2026-09-20
llmp	misc		https://arxiv.org/html/2304.11477v3	2026-09-20
taubench	misc		https://arxiv.org/abs/2406.12045	2026-09-20
agentbench	misc		https://arxiv.org/abs/2308.03688	2026-09-20
hongreview	article	10.1021/acs.biochem.6c00138	https://doi.org/10.1021/acs.biochem.6c00138	2026-09-20
therapeutic2022	article	10.1038/s41392-022-00904-4	https://doi.org/10.1038/s41392-022-00904-4	2026-09-20
membranemacrocycles	article	10.1016/j.cell.2022.07.019	https://doi.org/10.1016/j.cell.2022.07.019	2026-09-20
rfpeptides	article	10.1038/s41589-025-01929-w	https://doi.org/10.1038/s41589-025-01929-w	2026-09-20
afcycdesign	article	10.1038/s41467-025-59940-7	https://doi.org/10.1038/s41467-025-59940-7	2026-09-20
pepinvent	article	10.1039/d4sc07642g	https://doi.org/10.1039/d4sc07642g	2026-09-20
helmgpt	article	10.1093/bioinformatics/btae364	https://doi.org/10.1093/bioinformatics/btae364	2026-09-20
boltzgen	article	10.1101/2025.11.20.689494	https://doi.org/10.1101/2025.11.20.689494	2026-09-20
erkdarpins	article	10.1073/pnas.1205399109	https://doi.org/10.1073/pnas.1205399109	2026-09-20
peptiversespace	misc		https://huggingface.co/spaces/ChatterjeeLab/PeptiVerse	2026-09-20
astramodel	misc		https://developers.openai.com/api/docs/models/gpt-6-astra	2026-09-20
claudeeffort	misc		https://platform.claude.com/docs/en/build-with-claude/effort	2026-09-20