| { |
| "episode_id": "real_data_replay", |
| "task": "binding", |
| "objective": "Reconstruct one observed SNOOPPI interaction with dataset source records.", |
| "targets": [ |
| { |
| "id": "snooppi_partner", |
| "accession": "SNOOPPI_partner_00202528", |
| "molecule": { |
| "sequence": "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA", |
| "modifications": [], |
| "bonds": [], |
| "n_terminus": "free", |
| "c_terminus": "free", |
| "smiles": null |
| }, |
| "species": "Homo sapiens", |
| "compartment": "source annotation", |
| "structure_paths": [], |
| "construct_start": 1 |
| } |
| ], |
| "countertargets": [], |
| "requirements": [ |
| { |
| "endpoint": "observed_interaction", |
| "unit": "binary_label", |
| "direction": "ge", |
| "threshold": 1.0, |
| "assay": "SNOOPPI_curated", |
| "scale": 1.0, |
| "required": true |
| } |
| ], |
| "administration": "retrospective dataset example", |
| "peptide_format": "linear", |
| "sequence_lengths": [ |
| 30 |
| ], |
| "budgets": { |
| "tool_calls": 64.0, |
| "gpu_minutes": 480.0, |
| "controller_calls": 40.0, |
| "controller_tokens": 128000.0, |
| "synthesis_slots": 24.0 |
| }, |
| "seed": 2027 |
| } |
