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3f98d52 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | [build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "remedi-cell"
version = "0.1.0"
description = "Replicate-enabled minimax endpoint-directed inference for molecule-dose selection"
readme = "README.md"
requires-python = ">=3.11"
dependencies = ["numpy>=1.24", "scipy>=1.10", "pandas>=2.0", "scikit-learn>=1.7", "cvxpy>=1.5", "clarabel>=0.9", "joblib>=1.3", "matplotlib>=3.7", "requests>=2.31", "PyYAML>=6", "rdkit>=2023.9"]
[project.optional-dependencies]
data = ["anndata>=0.10", "h5py>=3.9", "rdkit>=2023.9", "huggingface_hub>=0.25", "pyarrow>=14", "fsspec>=2024.2", "aiohttp>=3.9"]
encoders = ["torch>=2.2", "transformers>=4.40", "rdkit>=2023.9"]
dev = ["pytest>=8", "ruff>=0.5"]
[project.scripts]
remedi = "remedi.cli:main"
[tool.setuptools.packages.find]
where = ["src"]
[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-q"
[tool.ruff]
line-length = 100
[tool.setuptools.package-data]
remedi = ["fonts/*.ttf", "fonts/UFL.txt"]
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