Download gfp/scripts/pcomole.sh from ChatterjeeLab/pCoMole: direct link, hf CLI and curl.
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https://huggingface.co/ChatterjeeLab/pCoMole/resolve/main/gfp/scripts/pcomole.sh
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hf download hf://ChatterjeeLab/pCoMole/gfp/scripts/pcomole.sh
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661 Bytes
| set -euo pipefail | |
| ROOT="$(cd "$(dirname "$0")/../.." && pwd)" | |
| cd "$ROOT/gfp" | |
| python -u pcomole.py \ | |
| --root_dir "$ROOT/gfp/FPredX" \ | |
| --config "$ROOT/configs/config_gfp.yaml" \ | |
| --ckpt "$ROOT/gfp/ckpt/last_2.ckpt" \ | |
| --num_steps 10 \ | |
| --num_candidates 50 \ | |
| --num_rollouts 10 \ | |
| --objective_weights 3 1 1 \ | |
| --output_file "$ROOT/outputs/gfp_length_excitation_brightness.csv" \ | |
| --input 'MSSGALLFHGKIPYVVEMEGNVDGHTFSIRGKGYGDASVGKVDAQFICTTGDVPVPWSTLVTTLTYGAQCFAKYGPELKDFYKSCMPDGYVQERTITFEGDGNFKTRAEVTFENGSVYNRVKLNGQGFKKDGHVLGKNLEFNFTPHCLYIWGDQANHGLKSAFKICHEITGSKGDFIVADHTQMNTPIGGGPVHVPEYHHMSYHVKLSKDVTDHRDNMSLKETVRAVDCRKTYDFDAGSGDTS' | |