pCoMole / gfp /scripts /pcomole.sh
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#!/usr/bin/env bash
set -euo pipefail
ROOT="$(cd "$(dirname "$0")/../.." && pwd)"
cd "$ROOT/gfp"
python -u pcomole.py \
--root_dir "$ROOT/gfp/FPredX" \
--config "$ROOT/configs/config_gfp.yaml" \
--ckpt "$ROOT/gfp/ckpt/last_2.ckpt" \
--num_steps 10 \
--num_candidates 50 \
--num_rollouts 10 \
--objective_weights 3 1 1 \
--output_file "$ROOT/outputs/gfp_length_excitation_brightness.csv" \
--input 'MSSGALLFHGKIPYVVEMEGNVDGHTFSIRGKGYGDASVGKVDAQFICTTGDVPVPWSTLVTTLTYGAQCFAKYGPELKDFYKSCMPDGYVQERTITFEGDGNFKTRAEVTFENGSVYNRVKLNGQGFKKDGHVLGKNLEFNFTPHCLYIWGDQANHGLKSAFKICHEITGSKGDFIVADHTQMNTPIGGGPVHVPEYHHMSYHVKLSKDVTDHRDNMSLKETVRAVDCRKTYDFDAGSGDTS'