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@@ -14,16 +14,16 @@ The model should only be used in compliance with applicable laws, regulations, a
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  extra_gated_fields:
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  I agree to use this model for non-commercial use ONLY: checkbox
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  ---
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- ## Overview
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  This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
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  > **Visit https://github.com/discostudy/phenogemini
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  > for additional usage examples and demonstration data derived from real-world cohorts.**
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- ## Step 1: Generate Prompt
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  Use `https://phenogemini.org` to generate a prompt that includes similar patients.
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- ## Step 2: Inference
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  ```python
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  from transformers import AutoModelForCausalLM, AutoTokenizer
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  import torch
@@ -99,6 +99,6 @@ with torch.no_grad():
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  > **Special Gene Token Example**
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  > In `<|PhenoGemini-Special-Token-Entrez-ID-64087|>`, the numeric value after the final hyphen represents the Entrez Gene ID.
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- ## Contact
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  For questions about individual modules or accessing additional data, please email `dr.wunan@pumch.cn`, `jeffchenmed@gmail.com`, or `caijh09@gmail.com`.
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  extra_gated_fields:
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  I agree to use this model for non-commercial use ONLY: checkbox
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  ---
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+ # Overview
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  This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
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  > **Visit https://github.com/discostudy/phenogemini
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  > for additional usage examples and demonstration data derived from real-world cohorts.**
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+ # Step 1: Generate Prompt
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  Use `https://phenogemini.org` to generate a prompt that includes similar patients.
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+ # Step 2: Inference
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  ```python
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  from transformers import AutoModelForCausalLM, AutoTokenizer
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  import torch
 
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  > **Special Gene Token Example**
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  > In `<|PhenoGemini-Special-Token-Entrez-ID-64087|>`, the numeric value after the final hyphen represents the Entrez Gene ID.
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+ # Contact
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  For questions about individual modules or accessing additional data, please email `dr.wunan@pumch.cn`, `jeffchenmed@gmail.com`, or `caijh09@gmail.com`.
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