Text Generation
Transformers
Safetensors
English
llama
gpt-u
tiny-lm
pretrained-from-scratch
text-generation-inference
GPT-U-20M / scripts /prepare_data.py
DedeProGames's picture
GPT-U-20M: final weights, tokenizer, model card, scripts and logs
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"""Build the GPT-U-20M token shards: 2.68B tokens of the 45/35/20 mix plus 2M-token holdouts per domain.
Stages (each resumable; run through scripts/run_prepare.sh, which restarts the process between stages):
1. holdout data/tokens/val_<domain>.bin from holdout source files that never feed training or the tokenizer
2. streams each sub-stream (dclm, edu, code_py, code_other) is streamed from the Hub on its own and tokenized
until its token budget (share x total, +0.2% slack) -> data/tokens/streams/<name>.bin
3. assemble documents of the four stream files are interleaved in a seeded random order -> train_XXX.bin
4. validate sizes, token ids, shard overlaps, holdouts; then the stream files are deleted
Why streams are tokenized one at a time: holding the four Hub streams open together needs 7-8 GB with spikes past
11 GB, and on this machine memory pressure plus disk I/O has bugchecked Windows. One stream at a time peaks at ~2.5 GB.
The interleave is still per document with proportions fixed for the whole run (a seeded permutation of all documents),
so there are no domain blocks, and because every stream holds exactly its token share the realized shares are exact.
Shard format: uint16 token stream; every document is prefixed with <|endoftext|> (id 0); no padding, nothing
truncated. Shard k holds blocks*1024+1 tokens and its last token is repeated as the first token of shard k+1, so
block j of a shard is tokens[j*1024 : j*1024+1025].
"""
import argparse
import copy
import json
import multiprocessing as mp
import os
import random
import sys
import threading
import time
from pathlib import Path
os.environ.setdefault("TOKENIZERS_PARALLELISM", "false") # parallelism comes from the process pool
os.environ.setdefault("ARROW_DEFAULT_MEMORY_POOL", "system") # glibc malloc gives arrow buffers back; jemalloc hoards
import numpy as np
from tokenizers import Tokenizer
from sources import SEED, STREAM_DOMAIN, STREAM_SHARE, STREAMS, file_splits, open_stream
ROOT = Path(__file__).resolve().parents[1]
TOKENIZER_PATH = ROOT / "tokenizer" / "tokenizer.json"
SPLITS_PATH = ROOT / "data" / "file_splits.json"
VAL_DIR = ROOT / "data" / "tokens"
SEQ = 1024
STEPS, SEQS_PER_STEP = 19_840, 128
MARGIN_STEPS = 3 * 200 # room for the NaN guard's data skips (max 3 events x 200 steps) without repeating data
FULL_BLOCKS = (STEPS + MARGIN_STEPS) * SEQS_PER_STEP
STREAM_SLACK = 1.002 # each stream collects 0.2% over its share so assembly never runs short
HOLDOUT_TOKENS = 2_000_000
EVAL_WINDOWS = 200 * 8 # evaluate.py: 200 batches x 8 sequences
BATCH_DOCS = 512
BATCH_CHARS = 8_000_000 # also cap a batch by size: a few huge code files must not balloon a tokenizer worker
CKPT_EVERY = 20_000_000
READ_CHUNK = 16_000_000 # tokens per sequential read while assembling (DrvFs-friendly)
NUM_PROC = max(1, (os.cpu_count() or 3) - 2)
EOT_ID = 0
DOMAINS = ("dclm", "edu", "code")
SRC_IDX = {name: i for i, name in enumerate(STREAMS)}
RESTART_EXIT_CODE = 75 # run_prepare.sh starts a fresh process: next stage, or resume after the memory guard
MIN_AVAILABLE_GB = 3.0 # checked after every batch: checkpoint, then restart
HARD_MIN_AVAILABLE_GB = 1.5 # checked twice a second: restart at once from the last periodic checkpoint
def log(msg: str) -> None:
print(f"[{time.strftime('%H:%M:%S')}] {msg}", flush=True)
def write_json(path: Path, obj: dict) -> None:
tmp = path.with_suffix(path.suffix + ".tmp")
tmp.write_text(json.dumps(obj, indent=2))
os.replace(tmp, path)
def load_tokenizer() -> Tokenizer:
tok = Tokenizer.from_file(str(TOKENIZER_PATH))
tok.encode_special_tokens = True # a literal "<|endoftext|>" inside a document is plain text
return tok
# ---------------------------------------------------------------- memory guard
def rss_gb(pid: int | str = "self") -> float:
try:
with open(f"/proc/{pid}/status") as f:
return next(int(line.split()[1]) for line in f if line.startswith("VmRSS")) / 2**20
except (OSError, StopIteration): # the process is gone
return 0.0
def tree_rss_gb() -> float:
"""This process plus its tokenizer workers."""
return rss_gb() + sum(rss_gb(child.pid) for child in mp.active_children())
def available_gb() -> float:
with open("/proc/meminfo") as f:
return next(int(line.split()[1]) for line in f if line.startswith("MemAvailable")) / 2**20
def start_memory_watchdog() -> None:
"""Last line of defence for spikes between batch checks (or during a resume's fast-forward, which writes
nothing): kill the workers and exit at once; the restart redoes at most CKPT_EVERY tokens."""
def watch() -> None:
while True:
available = available_gb()
if available < HARD_MIN_AVAILABLE_GB:
log(f"memory watchdog: WSL available {available:.2f} GB -> hard restart from the last checkpoint")
for child in mp.active_children():
child.kill()
sys.stdout.flush()
os._exit(RESTART_EXIT_CODE)
time.sleep(0.5)
threading.Thread(target=watch, daemon=True, name="memory-watchdog").start()
# ---------------------------------------------------------------- tokenizer workers (spawned processes)
_tok = None
def _init_worker() -> None:
global _tok
_tok = load_tokenizer()
def _encode(job):
b, texts = job
t0 = time.perf_counter()
encs = _tok.encode_batch_fast(texts)
lens = np.fromiter((len(e.ids) + 1 for e in encs), dtype=np.int64, count=len(encs))
ids = np.empty(int(lens.sum()), dtype=np.uint16)
pos = 0
for e, n in zip(encs, lens):
ids[pos] = EOT_ID
ids[pos + 1:pos + n] = e.ids
pos += n
return b, ids, lens, time.perf_counter() - t0
# ---------------------------------------------------------------- 1. holdout
def token_byte_lengths(tok: Tokenizer) -> np.ndarray:
"""UTF-8 bytes per token id. Each byte-level BPE character stands for exactly one byte; the special token is 0."""
lengths = np.zeros(tok.get_vocab_size(), dtype=np.int64)
for token, idx in tok.get_vocab().items():
if idx != EOT_ID:
lengths[idx] = len(token)
return lengths
def build_holdout(splits: dict, tok: Tokenizer) -> dict:
"""2M tokens per domain from the holdout files; the code holdout holds the same 27/73 Python split as training."""
VAL_DIR.mkdir(parents=True, exist_ok=True)
byte_len = token_byte_lengths(tok)
index_path = VAL_DIR / "index.json"
val = json.loads(index_path.read_text()).get("val", {}) if index_path.exists() else {}
need = HOLDOUT_TOKENS + 1
for domain in DOMAINS:
path = VAL_DIR / f"val_{domain}.bin"
if domain in val and path.exists():
continue
names = [n for n in STREAMS if STREAM_DOMAIN[n] == domain]
docs = []
for name in names:
budget = need * STREAM_SHARE[name] / sum(STREAM_SHARE[n] for n in names)
got = 0
for row in open_stream(name, splits[domain]["holdout"]):
ids = np.array([EOT_ID] + tok.encode(row["text"]).ids, dtype=np.uint16)
docs.append((name, ids))
got += len(ids)
if got >= budget:
break
random.Random(SEED).shuffle(docs)
chunks, by_stream, n = [], dict.fromkeys(names, 0), 0
for name, ids in docs:
take = min(len(ids), need - n)
chunks.append(ids[:take])
by_stream[name] += take
n += take
if n == need:
break
arr = np.concatenate(chunks)
assert len(arr) == need, f"holdout {domain}: only {len(arr):,} tokens"
targets = arr[1:]
tmp = path.with_suffix(".bin.tmp")
arr.tofile(tmp)
os.replace(tmp, path)
val[domain] = {
"file": path.name, "tokens": int(len(arr)), "targets": int(len(targets)), "docs": len(chunks),
"bytes": int(byte_len[targets].sum()),
"eval_windows": EVAL_WINDOWS, "eval_targets": EVAL_WINDOWS * SEQ,
"eval_bytes": int(byte_len[targets[:EVAL_WINDOWS * SEQ]].sum()),
"tokens_by_stream": by_stream, "source_files": splits[domain]["holdout"],
}
log(f"holdout {domain}: {len(arr):,} tokens, {len(chunks):,} docs, {val[domain]['bytes']:,} bytes "
f"({val[domain]['bytes'] / len(targets):.3f} bytes/token), by stream {by_stream}")
index = json.loads(index_path.read_text()) if index_path.exists() else {}
index["val"] = val
write_json(index_path, index)
return val
# ---------------------------------------------------------------- 2. one sub-stream -> token file
def tokenize_stream(name: str, files: list[str], budget: int, max_rss_gb: float, stream_dir: Path) -> dict:
"""Stream one sub-stream from the Hub and append its EOT-prefixed documents to <stream_dir>/<name>.bin until the
token budget is reached (whole documents only). Checkpoints every CKPT_EVERY tokens."""
stream_dir.mkdir(parents=True, exist_ok=True)
out_path, meta_path = stream_dir / f"{name}.bin", stream_dir / f"{name}.json"
tmp_path, ckpt_path = stream_dir / f"{name}.bin.tmp", stream_dir / f"{name}.state.json"
state = json.loads(ckpt_path.read_text()) if ckpt_path.exists() else None
ds = open_stream(name, files)
if state:
ds.load_state_dict(state["stream"])
tokens, docs = (state["tokens"], state["docs"]) if state else (0, 0)
f = open(tmp_path, "r+b" if state and tmp_path.exists() else "wb")
f.truncate(tokens * 2)
f.seek(tokens * 2)
log(f"{name}: budget {budget / 1e6:,.1f}M tokens" + (f", resuming at {tokens / 1e6:,.1f}M" if state else ""))
stop = threading.Event()
sem = threading.Semaphore(2 * NUM_PROC) # keeps the pool from pulling the whole stream into memory
stream_states = {}
def jobs():
texts, n_chars, b = [], 0, 0
for row in ds:
if not row["text"]:
continue
texts.append(row["text"])
n_chars += len(row["text"])
if len(texts) == BATCH_DOCS or n_chars >= BATCH_CHARS:
sem.acquire()
if stop.is_set():
return
stream_states[b] = copy.deepcopy(ds.state_dict())
yield b, texts
texts, n_chars, b = [], 0, b + 1
def checkpoint(stream_state: dict) -> None:
f.flush()
os.fsync(f.fileno())
write_json(ckpt_path, {"stream": stream_state, "tokens": tokens, "docs": docs})
start_tokens, enc_secs, t0 = tokens, 0.0, time.time()
next_ckpt, next_log = tokens + CKPT_EVERY, tokens + 100_000_000
done = False
with mp.get_context("spawn").Pool(NUM_PROC, initializer=_init_worker) as pool:
for b, ids, lens, secs in pool.imap(_encode, jobs()):
sem.release()
stream_state = stream_states.pop(b)
if tokens + ids.size >= budget: # stop after the document that crosses the budget
cut = int(np.searchsorted(np.cumsum(lens), budget - tokens)) + 1
ids, lens = ids[:int(lens[:cut].sum())], lens[:cut]
done = True
f.write(ids.tobytes())
tokens += int(ids.size)
docs += len(lens)
enc_secs += secs
if done:
break
if tokens >= next_ckpt:
checkpoint(stream_state)
next_ckpt += CKPT_EVERY
if tree_rss_gb() > max_rss_gb or available_gb() < MIN_AVAILABLE_GB:
checkpoint(stream_state)
log(f"memory guard: prep rss {tree_rss_gb():.1f} GB, WSL available {available_gb():.1f} GB at "
f"{tokens / 1e6:,.0f}M {name} tokens -> checkpoint written, restarting")
stop.set()
for _ in range(4 * NUM_PROC):
sem.release()
pool.terminate()
sys.stdout.flush()
os._exit(RESTART_EXIT_CODE) # streaming threads can stall a normal interpreter exit
if tokens >= next_log:
rate = (tokens - start_tokens) / (time.time() - t0)
log(f"{name}: {tokens / 1e6:,.0f}M / {budget / 1e6:,.0f}M tokens | {rate:,.0f} tok/s end-to-end | "
f"tokenizer capacity {(tokens - start_tokens) / enc_secs * NUM_PROC:,.0f} tok/s | "
f"ETA {(budget - tokens) / rate / 60:.0f} min | prep rss {tree_rss_gb():.1f} GB")
next_log += 100_000_000
stop.set()
for _ in range(4 * NUM_PROC):
sem.release()
pool.terminate()
if not done:
raise RuntimeError(f"{name}: source files ran out at {tokens:,} tokens (budget {budget:,})")
f.flush()
os.fsync(f.fileno())
f.close()
os.replace(tmp_path, out_path)
secs = time.time() - t0
meta = {"name": name, "tokens": tokens, "docs": docs, "budget": budget, "seconds_last_run": round(secs),
"tok_s_end_to_end": round((tokens - start_tokens) / secs),
"tok_s_tokenizer_capacity": round((tokens - start_tokens) / enc_secs * NUM_PROC), "num_proc": NUM_PROC}
write_json(meta_path, meta)
ckpt_path.unlink(missing_ok=True)
log(f"{name}: done, {tokens:,} tokens, {docs:,} docs, {meta['tok_s_end_to_end']:,} tok/s end-to-end, "
f"tokenizer capacity {meta['tok_s_tokenizer_capacity']:,} tok/s")
return meta
# ---------------------------------------------------------------- 3. assemble shards
class ShardWriter:
def __init__(self, out_dir: Path, total_blocks: int, shard_tokens: int):
self.out_dir = out_dir
self.total_blocks = total_blocks
self.shard_blocks = shard_tokens // SEQ
self.shards = []
self.blocks_done = 0
self.cur = 0
self.cur_counts = np.zeros(len(STREAMS), dtype=np.int64)
self._open()
def _target(self) -> tuple[int, int]:
blocks = min(self.shard_blocks, self.total_blocks - self.blocks_done)
return blocks, blocks * SEQ + 1
def _open(self) -> None:
self.tmp_path = self.out_dir / f"train_{len(self.shards):03d}.bin.tmp"
self.f = open(self.tmp_path, "wb")
def add(self, ids: np.ndarray, src_per_token: np.ndarray) -> bool:
"""Append tokens; returns True once all blocks are written."""
pos = 0
while pos < len(ids):
blocks, target = self._target()
take = min(target - self.cur, len(ids) - pos)
self.f.write(ids[pos:pos + take].tobytes())
self.cur_counts += np.bincount(src_per_token[pos:pos + take], minlength=len(STREAMS))
self.cur += take
pos += take
if self.cur == target:
self._close_shard(blocks, int(ids[pos - 1]))
if self.blocks_done == self.total_blocks:
return True
return False
def _close_shard(self, blocks: int, last_token: int) -> None:
self.f.flush()
os.fsync(self.f.fileno())
self.f.close()
name = self.tmp_path.name.removesuffix(".tmp")
os.replace(self.tmp_path, self.out_dir / name)
self.shards.append({"file": name, "tokens": self.cur, "blocks": blocks,
"tokens_by_stream": dict(zip(STREAMS, self.cur_counts.tolist()))})
self.blocks_done += blocks
log(f"shard {name}: {blocks:,} blocks, {self.cur:,} tokens")
if self.blocks_done < self.total_blocks:
self._open()
self.f.write(np.array([last_token], dtype=np.uint16).tobytes()) # overlap token, counted in prior shard
self.cur = 1
self.cur_counts = np.zeros(len(STREAMS), dtype=np.int64)
def doc_lengths(path: Path, n_tokens: int) -> np.ndarray:
"""Every document starts with <|endoftext|> and id 0 occurs nowhere else, so its positions delimit documents."""
starts = []
with open(path, "rb") as f:
for off in range(0, n_tokens, READ_CHUNK):
chunk = np.frombuffer(f.read(min(READ_CHUNK, n_tokens - off) * 2), dtype=np.uint16)
starts.append(np.flatnonzero(chunk == EOT_ID) + off)
starts = np.concatenate(starts)
assert starts[0] == 0, f"{path.name} does not start with <|endoftext|>"
return np.diff(np.append(starts, n_tokens))
class SequentialReader:
def __init__(self, path: Path):
self.f = open(path, "rb")
self.buf = np.empty(0, dtype=np.uint16)
self.pos = 0
def take(self, n: int) -> np.ndarray:
while len(self.buf) - self.pos < n:
more = np.frombuffer(self.f.read(READ_CHUNK * 2), dtype=np.uint16)
if more.size == 0:
raise EOFError(self.f.name)
self.buf = np.concatenate([self.buf[self.pos:], more])
self.pos = 0
out = self.buf[self.pos:self.pos + n]
self.pos += n
return out
def assemble(metas: dict, out_dir: Path, total_blocks: int, shard_tokens: int) -> dict:
"""Interleave the documents of the four stream files in a seeded random order (per-document sampling at
proportions fixed for the whole run) and pack them into shards. Fast and local, so it always starts over."""
for p in out_dir.glob("train_*.bin*"):
p.unlink()
stream_dir = out_dir / "streams"
lengths = {}
for name in STREAMS:
lengths[name] = doc_lengths(stream_dir / f"{name}.bin", metas[name]["tokens"])
assert len(lengths[name]) == metas[name]["docs"], f"{name}: document count mismatch"
order = np.concatenate([np.full(len(lengths[n]), SRC_IDX[n], dtype=np.uint8) for n in STREAMS])
np.random.default_rng(SEED).shuffle(order)
readers = {n: SequentialReader(stream_dir / f"{n}.bin") for n in STREAMS}
used = dict.fromkeys(STREAMS, 0)
writer = ShardWriter(out_dir, total_blocks, shard_tokens)
t0, done = time.time(), False
chunks, srcs, doc_lens, pending = [], [], [], 0
for s in order.tolist():
name = STREAMS[s]
n = int(lengths[name][used[name]])
used[name] += 1
chunks.append(readers[name].take(n))
srcs.append(s)
doc_lens.append(n)
pending += n
if pending >= 4_000_000:
done = writer.add(np.concatenate(chunks), np.repeat(np.array(srcs, dtype=np.uint8), doc_lens))
chunks, srcs, doc_lens, pending = [], [], [], 0
if done:
break
if not done and chunks:
done = writer.add(np.concatenate(chunks), np.repeat(np.array(srcs, dtype=np.uint8), doc_lens))
if not done:
raise RuntimeError("stream files are too short for the requested number of blocks")
log(f"assembled {writer.blocks_done:,} blocks in {time.time() - t0:.0f}s; documents used {used}")
by_stream = {n: sum(s["tokens_by_stream"][n] for s in writer.shards) for n in STREAMS}
total = sum(by_stream.values())
by_domain = {d: sum(v for n, v in by_stream.items() if STREAM_DOMAIN[n] == d) for d in DOMAINS}
index_path = out_dir / "index.json"
index = json.loads(index_path.read_text()) if index_path.exists() else {}
for stale in ("probabilities", "token_caps", "skipped_docs_after_cap"):
index.pop(stale, None)
index.update({
"tokenizer": str(TOKENIZER_PATH.relative_to(ROOT)), "dtype": "uint16", "seq_len": SEQ, "block": SEQ + 1,
"stride": SEQ, "eot_id": EOT_ID, "seed": SEED,
"mix": {"method": "each sub-stream tokenized to its token budget, documents interleaved in a seeded random "
"order (per-document sampling at fixed proportions)",
"target_share_by_stream": STREAM_SHARE, "streams": metas, "documents_used": used},
"blocks": writer.blocks_done, "train_steps": STEPS, "seqs_per_step": SEQS_PER_STEP,
"margin_steps": MARGIN_STEPS if total_blocks == FULL_BLOCKS else 0,
"shards": writer.shards,
"total": {
"tokens": total, "tokens_by_stream": by_stream, "tokens_by_domain": by_domain,
"share_by_stream": {n: by_stream[n] / total for n in STREAMS},
"share_by_domain": {d: by_domain[d] / total for d in DOMAINS},
"python_share_of_code": by_stream["code_py"] / by_domain["code"],
},
"throughput": {
"tok_s_end_to_end_by_stream": {n: metas[n]["tok_s_end_to_end"] for n in STREAMS},
"tok_s_tokenizer_capacity_by_stream": {n: metas[n]["tok_s_tokenizer_capacity"] for n in STREAMS},
"num_proc": NUM_PROC,
},
})
write_json(index_path, index)
return index
# ---------------------------------------------------------------- 4. validation
def validate(out_dir: Path) -> None:
index = json.loads((out_dir / "index.json").read_text())
tok = Tokenizer.from_file(str(TOKENIZER_PATH))
vocab = tok.get_vocab_size()
rng = np.random.default_rng(0)
prev_last = None
for s in index["shards"]:
arr = np.fromfile(out_dir / s["file"], dtype=np.uint16) # sequential read; mmap over DrvFs is slow
assert len(arr) == s["tokens"] == s["blocks"] * SEQ + 1, f"{s['file']}: size mismatch"
assert int(arr.max()) < vocab, f"{s['file']}: token id out of range"
if prev_last is not None:
assert int(arr[0]) == prev_last, f"{s['file']}: overlap token mismatch"
prev_last = int(arr[-1])
eot = int((arr == EOT_ID).sum())
j = int(rng.integers(s["blocks"]))
text = tok.decode(arr[j * SEQ:j * SEQ + SEQ + 1].tolist(), skip_special_tokens=False)
log(f"{s['file']} ok: {s['blocks']:,} blocks, {eot:,} docs (mean {len(arr) / max(eot, 1):,.0f} tokens/doc) | "
f"block {j}: {text[:160]!r}")
del arr
for d, v in index.get("val", {}).items():
arr = np.fromfile(VAL_DIR / v["file"], dtype=np.uint16)
assert len(arr) == v["tokens"] and int(arr.max()) < vocab
log(f"val_{d} ok: {len(arr):,} tokens, {v['bytes']:,} bytes, by stream {v['tokens_by_stream']}")
t = index["total"]
log(f"blocks {index['blocks']:,} (training needs {STEPS * SEQS_PER_STEP:,}) | shares by domain: "
+ ", ".join(f"{d} {100 * x:.2f}%" for d, x in t["share_by_domain"].items())
+ f" | python in code {100 * t['python_share_of_code']:.1f}%")
def main() -> None:
ap = argparse.ArgumentParser()
ap.add_argument("--out", type=Path, default=VAL_DIR)
ap.add_argument("--blocks", type=int, default=FULL_BLOCKS)
ap.add_argument("--shard-tokens", type=int, default=500_000_000)
ap.add_argument("--validate", action="store_true", help="only validate an existing output directory")
ap.add_argument("--max-rss-gb", type=float, default=8.0,
help="memory guard: checkpoint and restart when this process plus its workers exceed it")
ap.add_argument("--keep-streams", action="store_true", help="keep data/tokens/streams after validation")
args = ap.parse_args()
out_dir = args.out if args.out.is_absolute() else ROOT / args.out
if args.validate:
validate(out_dir)
return
out_dir.mkdir(parents=True, exist_ok=True)
start_memory_watchdog()
tok = load_tokenizer()
splits = file_splits(SPLITS_PATH)
build_holdout(splits, tok)
target_tokens = args.blocks * SEQ + 1
stream_dir = out_dir / "streams"
metas = {}
for name in STREAMS:
meta_path = stream_dir / f"{name}.json"
if meta_path.exists():
metas[name] = json.loads(meta_path.read_text())
continue
budget = int(STREAM_SHARE[name] * target_tokens * STREAM_SLACK) + 1
tokenize_stream(name, splits[STREAM_DOMAIN[name]]["train"], budget, args.max_rss_gb, stream_dir)
sys.stdout.flush()
os._exit(RESTART_EXIT_CODE) # next stream in a fresh process, with a fresh heap
index = assemble(metas, out_dir, args.blocks, args.shard_tokens)
log(json.dumps({k: index[k] for k in ("total", "throughput")}, indent=2))
validate(out_dir)
if not args.keep_streams:
for p in stream_dir.glob("*"):
p.unlink()
stream_dir.rmdir()
log("stream files deleted")
sys.stdout.flush()
os._exit(0) # streaming threads can stall a normal interpreter exit
if __name__ == "__main__":
main()