Publish AlphaEnzyme checkpoints and checksums
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README.md
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---
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tags:
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- enzyme
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- protein
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- pytorch
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- biology
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---
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# AlphaEnzyme checkpoints
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PyTorch checkpoints for the AlphaEnzyme specificity, kinetics, and mutation tasks. The corresponding code is available in the [`liuyong` branch of the AlphaEnzyme repository](https://github.com/yliust/AlphaEnzyme/tree/liuyong). Input data are published separately at [GENTEL-Lab/AlphaEnzyme-data](https://huggingface.co/datasets/GENTEL-Lab/AlphaEnzyme-data).
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## Files
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| Task | Checkpoint |
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| --- | --- |
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| Specificity | `checkpoints/specificity/specificity_final.pt` |
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| Kinetics | `checkpoints/kinetics/seed_1234/multitask_epoch18.pt` |
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| Kinetics | `checkpoints/kinetics/seed_2026/multitask_epoch2.pt` |
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| Kinetics | `checkpoints/kinetics/seed_3407/multitask_epoch16.pt` |
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| Mutation | `checkpoints/mutation_final.pt` |
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Download all files into the AlphaEnzyme project root:
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```bash
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hf download GENTEL-Lab/AlphaEnzyme --local-dir .
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```
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This recreates the `checkpoints/` directory directly. To download a single checkpoint, provide its repository path to `hf download`.
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`SHA256SUMS` records the SHA-256 digest of each released checkpoint. The checkpoints are provided as PyTorch `.pt` files; follow the repository's task-specific loading code and configuration when using them.
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SHA256SUMS
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b8f3a9fb4079794115038e75d3aa3132492641c0fd1a2447e2b6041066f76e7a checkpoints/kinetics/seed_1234/multitask_epoch18.pt
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7c1afb4e51b56b062ea5d0c57e735bc628e7976da930ec4d6cb42fb757b42bad checkpoints/kinetics/seed_2026/multitask_epoch2.pt
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3d4218f5819afd91f1d66695ffa08aef35e95e31c57a02a141434d4d3e6be916 checkpoints/kinetics/seed_3407/multitask_epoch16.pt
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68aba01af6e5ba311b3f48e406384f77a365ff6392c8aeabf1c3be9da9a0e4f4 checkpoints/mutation_final.pt
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c939645438c0e29109e65a618eda37a99351d356e23233b6152d25ad3f3bffc8 checkpoints/specificity/specificity_final.pt
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checkpoints/kinetics/seed_1234/multitask_epoch18.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:b8f3a9fb4079794115038e75d3aa3132492641c0fd1a2447e2b6041066f76e7a
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size 1291377082
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checkpoints/kinetics/seed_2026/multitask_epoch2.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:7c1afb4e51b56b062ea5d0c57e735bc628e7976da930ec4d6cb42fb757b42bad
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size 1291376578
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checkpoints/kinetics/seed_3407/multitask_epoch16.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:3d4218f5819afd91f1d66695ffa08aef35e95e31c57a02a141434d4d3e6be916
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size 1291377082
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checkpoints/mutation_final.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:68aba01af6e5ba311b3f48e406384f77a365ff6392c8aeabf1c3be9da9a0e4f4
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size 562680074
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checkpoints/specificity/specificity_final.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:c939645438c0e29109e65a618eda37a99351d356e23233b6152d25ad3f3bffc8
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size 53191760
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