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results/ralph26_comprehensive_summary.tsv
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# Provenance:
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# Compiled from: ralph26_task{1..9} result files
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# Method: Comprehensive summary of all Ralph26 analyses for POC target
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# Date: 2026-02-12
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# Integrity Check: PASSED - All values from real analysis results
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task analysis pfam_representation n_features target delta_r2 t_pval wilcoxon_pval cohens_d ci95_lo ci95_hi folds_positive n_folds significant notes
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3 k-sweep modules_k5 5 poc_mean_mg_m3 -0.0122 0.7497 1.0000 -0.110 -0.097 0.073 5 9 No
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3 k-sweep modules_k8 8 poc_mean_mg_m3 -0.0489 0.4925 1.0000 -0.240 -0.206 0.108 6 9 No
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3 k-sweep modules_k10 10 poc_mean_mg_m3 0.0126 0.6440 0.4961 0.160 -0.048 0.073 6 9 No
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3 k-sweep modules_k15 15 poc_mean_mg_m3 -0.0069 0.8864 0.6523 -0.049 -0.115 0.102 6 9 No
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3 k-sweep modules_k20 20 poc_mean_mg_m3 -0.0934 0.1570 0.1289 -0.521 -0.231 0.045 2 9 No Matches Ralph23 negative finding
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3 k-sweep modules_k30 30 poc_mean_mg_m3 -0.5300 0.3642 0.8203 -0.321 -1.800 0.740 4 9 No One catastrophic fold
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3 k-sweep modules_k40 40 poc_mean_mg_m3 0.0397 0.4705 0.4961 0.252 -0.081 0.161 6 9 No Best overall k
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3 k-sweep modules_k50 50 poc_mean_mg_m3 0.0253 0.6698 0.3008 0.148 -0.106 0.157 6 9 No
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4 poc-correlated (leaked) poc_top20 20 poc_mean_mg_m3 -0.0754 0.4336 0.7344 -0.275 -0.286 0.135 3 9 No Pre-selected upper bound
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4 poc-correlated (leaked) poc_top50 50 poc_mean_mg_m3 0.0172 0.6226 0.6523 0.171 -0.060 0.095 4 9 No Pre-selected upper bound
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4 poc-correlated (leaked) poc_top100 100 poc_mean_mg_m3 -0.0339 0.3979 1.0000 -0.298 -0.122 0.054 5 9 No Pre-selected upper bound
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5 within-fold selection withinfold_top50 50 poc_mean_mg_m3 0.0145 0.7381 0.1641 0.115 -0.082 0.111 7 9 No Leakage-free; Jaccard=0.744
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6 residual prediction modules_k40 40 env_residuals -11.0137 0.2825 NA NA -33.057 11.029 1 9 No R2 massively negative
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6 residual prediction poc_top50 50 env_residuals -4.4502 0.1330 NA NA -10.587 1.686 0 9 No R2 massively negative
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7 ratio target modules_k40 40 log2_poc_chl_ratio 0.0053 0.7982 0.9102 0.088 -0.041 0.051 5 9 No Dark carbon hypothesis
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7 ratio target poc_top50 50 log2_poc_chl_ratio 0.0154 0.4985 0.6523 0.236 -0.035 0.065 6 9 No Dark carbon hypothesis
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8 regional (Atlantic) modules_k40 40 poc_mean_mg_m3 0.0015 0.9868 1.0000 0.011 -0.349 0.352 1 3 No n=363
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8 regional (Atlantic) poc_top50 50 poc_mean_mg_m3 -0.1560 0.3578 0.5000 -0.684 -0.723 0.411 1 3 No n=363
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8 regional (Pacific) modules_k40 40 poc_mean_mg_m3 -0.0785 0.1542 0.2500 -1.294 -0.229 0.072 0 3 No n=432; all folds negative
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8 regional (Pacific) poc_top50 50 poc_mean_mg_m3 -3.5900 0.4257 1.0000 -0.573 -19.159 11.979 2 3 No n=432; catastrophic fold
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9 permutation test modules_k40 40 poc_mean_mg_m3 0.0397 0.1988 NA 0.252 NA NA NA 9 No 198/1000 exceeded; p=0.199
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