uploaded TransfoRNA repo

0b11a42 verified over 2 years ago

858 Bytes

#!/bin/bash
python_version="3.9"
# Initialize conda
eval "$(conda shell.bash hook)"
#print the current environment
echo "The current environment is $CONDA_DEFAULT_ENV."
while [[ "$CONDA_DEFAULT_ENV" != "base" ]]; do
    conda deactivate
done

#if conde transforna not found in the list of environments, then create the environment
if [[ $(conda env list | grep "transforna") == "" ]]; then
    conda create -n transforna python=$python_version -y
    conda activate transforna
    conda install -c anaconda setuptools -y


    
fi
conda activate transforna

echo "The current environment is transforna."
pip install setuptools==59.5.0
# Uninstall TransfoRNA using pip
pip uninstall -y TransfoRNA

rm -rf dist TransfoRNA.egg-info


# Reinstall TransfoRNA using pip
python setup.py sdist
pip install dist/TransfoRNA-0.0.1.tar.gz
rm -rf TransfoRNA.egg-info dist

	#!/bin/bash
	python_version="3.9"
	# Initialize conda
	eval "$(conda shell.bash hook)"
	#print the current environment
	echo "The current environment is $CONDA_DEFAULT_ENV."
	while [[ "$CONDA_DEFAULT_ENV" != "base" ]]; do
	conda deactivate
	done

	#if conde transforna not found in the list of environments, then create the environment
	if [[ $(conda env list \| grep "transforna") == "" ]]; then
	conda create -n transforna python=$python_version -y
	conda activate transforna
	conda install -c anaconda setuptools -y



	fi
	conda activate transforna

	echo "The current environment is transforna."
	pip install setuptools==59.5.0
	# Uninstall TransfoRNA using pip
	pip uninstall -y TransfoRNA

	rm -rf dist TransfoRNA.egg-info


	# Reinstall TransfoRNA using pip
	python setup.py sdist
	pip install dist/TransfoRNA-0.0.1.tar.gz
	rm -rf TransfoRNA.egg-info dist