| from setuptools import find_packages, setup |
|
|
| setup( |
| name='TransfoRNA', |
| version='0.0.1', |
| description='TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy', |
| url='https://github.com/gitHBDX/TransfoRNA', |
| author='YasserTaha,JuliaJehn', |
| author_email='ytaha@hb-dx.com,jjehn@hb-dx.com,tsikosek@hb-dx.com', |
| classifiers=[ |
| 'Development Status :: 4 - Beta', |
| 'Intended Audience :: Biological Researchers', |
| 'License :: OSI Approved :: MIT License', |
| 'Programming Language :: Python :: 3.9', |
| ], |
| packages=find_packages(include=['transforna', 'transforna.*']), |
| install_requires=[ |
| "anndata==0.8.0", |
| "dill==0.3.6", |
| "hydra-core==1.3.0", |
| "imbalanced-learn==0.9.1", |
| "matplotlib==3.5.3", |
| "numpy==1.22.3", |
| "omegaconf==2.2.2", |
| "pandas==1.5.2", |
| "plotly==5.10.0", |
| "PyYAML==6.0", |
| "rich==12.6.0", |
| "viennarna>=2.5.0a5", |
| "scanpy==1.9.1", |
| "scikit_learn==1.2.0", |
| "skorch==0.12.1", |
| "torch==1.10.1", |
| "tensorboard==2.16.2", |
| "Levenshtein==0.21.0" |
| ], |
| python_requires='>=3.9', |
| |
| package_data={'': ['*.yaml']}, |
| ) |
|
|
