Update config.json

config.json

@@ -36,8 +36,6 @@
   "features": {
     "Fragment Match Features": {
       "_target_": "winnow.calibration.features.fragment_match.FragmentMatchFeatures",
-      "mz_tolerance_ppm": 20,
-      "mz_tolerance_da": null,
       "learn_from_missing": false,
       "intensity_model_name": "Prosit_2025_intensity_22PTM",
       "max_precursor_charge": 6,
@@ -47,19 +45,8 @@
         "[UNIMOD:385]",
         "(+25.98)"
       ],
-      "model_input_constants": null,
-      "model_input_columns": {
-        "collision_energies": "collision_energy",
-        "fragmentation_types": "frag_type"
-      },
-      "koina_server_url": "localhost:8500",
-      "koina_ssl": false,
-      "excluded_columns": [
-        "complementary_ion_count",
-        "max_ion_gap",
-        "spectral_angle",
-        "xcorr"
-      ]
+      "mz_tolerance": 20,
+      "mz_tolerance_unit": "ppm"
     },
     "iRT Feature": {
       "_target_": "winnow.calibration.features.retention_time.RetentionTimeFeature",
@@ -73,15 +60,10 @@
         "[UNIMOD:5]",
         "[UNIMOD:385]",
         "(+25.98)"
-      ],
-      "koina_server_url": "localhost:8500",
-      "koina_ssl": false
+      ]
     },
     "Beam Features": {
-      "_target_": "winnow.calibration.features.beam.BeamFeatures",
-      "excluded_columns": [
-        "edit_distance"
-      ]
+      "_target_": "winnow.calibration.features.beam.BeamFeatures"
     },
     "Token Score Features": {
       "_target_": "winnow.calibration.features.token_score.TokenScoreFeatures"
@@ -233,4 +215,4 @@
       ]
     }
   }
-}
+}