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Browse files- MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/debug.json +14 -14
- MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/model_best.model +2 -2
- MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/model_latest.model +2 -2
- MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/progress.png +2 -2
- MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/training_log_2026_10_16_03_02_01.txt +0 -0
MedNeXt_Base/fold_0/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/debug.json
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{
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-
"all_val_losses": "[np.float32(-0.08916956), np.float32(-0.12137714), np.float32(-0.19052878), np.float32(-0.27197948), np.float32(-0.35847667), np.float32(-0.3656161), np.float32(-0.3837471), np.float32(-0.37134486), np.float32(-0.38080525), np.float32(-0.3865542), np.float32(-0.34625113), np.float32(-0.4382327), np.float32(-0.34963414), np.float32(-0.44697908), np.float32(-0.35495007), np.float32(-0.34786165), np.float32(-0.328925), np.float32(-0.38663968), np.float32(-0.34285665), np.float32(-0.34025463), np.float32(-0.43056634), np.float32(-0.42888004), np.float32(-0.24380608), np.float32(-0.31894898), np.float32(-0.41352454), np.float32(-0.36627468), np.float32(-0.51443326), np.float32(-0.5033348), np.float32(-0.4029147), np.float32(-0.5247224), np.float32(-0.38410532), np.float32(-0.47579148), np.float32(-0.4414705), np.float32(-0.48525086), np.float32(-0.46963403), np.float32(-0.41693023), np.float32(-0.30781966), np.float32(-0.46632886), np.float32(-0.55609494), np.float32(-0.45017087), np.float32(-0.37657946), np.float32(-0.3769211), np.float32(-0.35871455), np.float32(-0.41582888), np.float32(-0.42275128), np.float32(-0.23435621), np.float32(-0.4102009), np.float32(-0.52136445), np.float32(-0.4140325), np.float32(-0.3954364), np.float32(-0.39677578), np.float32(-0.36896148), np.float32(-0.43835983), np.float32(-0.49288714), np.float32(-0.40663648), np.float32(-0.29846582), np.float32(-0.35555604), np.float32(-0.5088454), np.float32(-0.36394536), np.float32(-0.35268646), np.float32(-0.39231655), np.float32(-0.4206043), np.float32(-0.46953148), np.float32(-0.3373498), np.float32(-0.25576064), np.float32(-0.50856274), np.float32(-0.47127828), np.float32(-0.4074003), np.float32(-0.39541566), np.float32(-0.560495), np.float32(-0.52555054), np.float32(-0.37941378), np.float32(-0.496115), np.float32(-0.51557064), np.float32(-0.44516554), np.float32(-0.49990037), np.float32(-0.53338265), np.float32(-0.5053932), np.float32(-0.5112909), np.float32(-0.5288888), np.float32(-0.4588317), np.float32(-0.4826864), np.float32(-0.5523021), np.float32(-0.54035044), np.float32(-0.5418796), np.float32(-0.5422781), np.float32(-0.5271104), np.float32(-0.44290447), np.float32(-0.2746993), np.float32(-0.31811422), np.float32(-0.43207818), np.float32(-0.2968474), np.float32(-0.484511), np.float32(-0.50244784), np.float32(-0.49928546), np.float32(-0.5860114), np.float32(-0.39656302), np.float32(-0.5046189), np.float32(-0.404435), np.float32(-0.4337685), np.float32(-0.47761184), np.float32(-0.49191648), np.float32(-0.53908813), np.float32(-0.49863213), np.float32(-0.5059263), np.float32(-0.3825668), np.float32(-0.23190159), np.float32(-0.49644583), np.float32(-0.44283733), np.float32(-0.4501389), np.float32(-0.37808523), np.float32(-0.46120661), np.float32(-0.49043617), np.float32(-0.4458477), np.float32(-0.55790114), np.float32(-0.4830499), np.float32(-0.531731), np.float32(-0.55577785), np.float32(-0.55736005), np.float32(-0.4518967), np.float32(-0.5539367), np.float32(-0.46596026), np.float32(-0.49285492), np.float32(-0.54964453), np.float32(-0.4895441), np.float32(-0.4870645), np.float32(-0.56225604), np.float32(-0.44263142), np.float32(-0.47941762), np.float32(-0.35377324), np.float32(-0.44927585), np.float32(-0.38186455), np.float32(-0.4111146), np.float32(-0.31940573), np.float32(-0.30479708), np.float32(-0.5189724), np.float32(-0.5632127), np.float32(-0.40663326), np.float32(-0.38516548), np.float32(-0.5373224), np.float32(-0.4343089), np.float32(-0.4555755), np.float32(-0.5264908), np.float32(-0.42551222), np.float32(-0.40095982), np.float32(-0.5992088), np.float32(-0.55658764), np.float32(-0.54091954), np.float32(-0.47537354), np.float32(-0.475381)]",
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"all_val_losses_tr_mode": "[]",
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"also_val_in_tr_mode": "False",
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-
"amp_grad_scaler": "<torch.cuda.amp.grad_scaler.GradScaler object at
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"base_num_features": "30",
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"basic_generator_patch_size": "[205 205 205]",
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"batch_dice": "False",
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"batch_size": "2",
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-
"best_MA_tr_loss_for_patience": "-0.
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| 13 |
-
"best_epoch_based_on_MA_tr_loss": "
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-
"best_val_eval_criterion_MA": "0.
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"classes": "[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]",
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"conv_per_stage": "2",
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"data_aug_params": "{'selected_data_channels': None, 'selected_seg_channels': [0], 'do_elastic': False, 'elastic_deform_alpha': (0.0, 900.0), 'elastic_deform_sigma': (9.0, 13.0), 'p_eldef': 0.2, 'do_scaling': True, 'scale_range': (0.7, 1.4), 'independent_scale_factor_for_each_axis': False, 'p_independent_scale_per_axis': 1, 'p_scale': 0.2, 'do_rotation': True, 'rotation_x': (-0.5235987755982988, 0.5235987755982988), 'rotation_y': (-0.5235987755982988, 0.5235987755982988), 'rotation_z': (-0.5235987755982988, 0.5235987755982988), 'rotation_p_per_axis': 1, 'p_rot': 0.2, 'random_crop': False, 'random_crop_dist_to_border': None, 'do_gamma': True, 'gamma_retain_stats': True, 'gamma_range': (0.7, 1.5), 'p_gamma': 0.3, 'do_mirror': True, 'mirror_axes': (0, 1, 2), 'dummy_2D': False, 'mask_was_used_for_normalization': OrderedDict({0: False}), 'border_mode_data': 'constant', 'all_segmentation_labels': None, 'move_last_seg_chanel_to_data': False, 'cascade_do_cascade_augmentations': False, 'cascade_random_binary_transform_p': 0.4, 'cascade_random_binary_transform_p_per_label': 1, 'cascade_random_binary_transform_size': (1, 8), 'cascade_remove_conn_comp_p': 0.2, 'cascade_remove_conn_comp_max_size_percent_threshold': 0.15, 'cascade_remove_conn_comp_fill_with_other_class_p': 0.0, 'do_additive_brightness': False, 'additive_brightness_p_per_sample': 0.15, 'additive_brightness_p_per_channel': 0.5, 'additive_brightness_mu': 0.0, 'additive_brightness_sigma': 0.1, 'num_threads': 8, 'num_cached_per_thread': 2, 'patch_size_for_spatialtransform': array([128, 128, 128])}",
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"dataset_directory": "/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026",
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"deep_supervision_scales": "[[1, 1, 1], [np.float64(0.5), np.float64(0.5), np.float64(0.5)], [np.float64(0.25), np.float64(0.25), np.float64(0.25)], [np.float64(0.125), np.float64(0.125), np.float64(0.125)], [np.float64(0.0625), np.float64(0.0625), np.float64(0.0625)], [np.float64(0.03125), np.float64(0.03125), np.float64(0.03125)]]",
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"deterministic": "False",
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| 21 |
-
"dl_tr": "<nnunet_mednext.training.dataloading.dataset_loading.DataLoader3D object at
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| 22 |
-
"dl_val": "<nnunet_mednext.training.dataloading.dataset_loading.DataLoader3D object at
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| 23 |
"do_dummy_2D_aug": "False",
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| 24 |
"ds_loss_weights": "[0.51612903 0.25806452 0.12903226 0.06451613 0.03225806 0. ]",
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| 25 |
-
"epoch": "
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| 26 |
"experiment_name": "nnUNetTrainerV2_MedNeXt_B_kernel3",
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| 27 |
"fold": "0",
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| 28 |
"folder_with_preprocessed_data": "/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026/nnUNetData_plans_v2.1_trgSp_1x1x1_stage0",
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@@ -32,7 +32,7 @@
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"inference_pad_kwargs": "{'constant_values': 0}",
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| 33 |
"init_args": "('/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026/nnUNetPlansv2.1_trgSp_1x1x1_plans_3D.pkl', 0, '/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1', '/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026', False, 0, True, False, True)",
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| 34 |
"initial_lr": "0.001",
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| 35 |
-
"log_file": "/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0/
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| 36 |
"lr_scheduler": "None",
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| 37 |
"lr_scheduler_eps": "0.001",
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| 38 |
"lr_scheduler_patience": "30",
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@@ -53,7 +53,7 @@
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| 53 |
"online_eval_fp": "[]",
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| 54 |
"online_eval_tp": "[]",
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| 55 |
"only_keep_largest_connected_component": "None",
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| 56 |
-
"optimizer": "AdamW (\nParameter Group 0\n amsgrad: False\n betas: (0.9, 0.999)\n capturable: False\n decoupled_weight_decay: True\n differentiable: False\n eps: 0.0001\n foreach: None\n fused: None\n lr: 0.
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| 57 |
"output_folder": "/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0",
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| 58 |
"output_folder_base": "/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1",
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| 59 |
"oversample_foreground_percent": "0.33",
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@@ -71,7 +71,7 @@
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| 71 |
"save_latest_only": "True",
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"stage": "0",
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"threeD": "True",
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| 74 |
-
"tr_gen": "<batchgenerators.dataloading.multi_threaded_augmenter.MultiThreadedAugmenter object at
|
| 75 |
"train_loss_MA": "None",
|
| 76 |
"train_loss_MA_alpha": "0.93",
|
| 77 |
"train_loss_MA_eps": "0.0005",
|
|
@@ -82,7 +82,7 @@
|
|
| 82 |
"use_progress_bar": "False",
|
| 83 |
"val_eval_criterion_MA": "None",
|
| 84 |
"val_eval_criterion_alpha": "0.9",
|
| 85 |
-
"val_gen": "<batchgenerators.dataloading.multi_threaded_augmenter.MultiThreadedAugmenter object at
|
| 86 |
"was_initialized": "True",
|
| 87 |
"weight_decay": "3e-05"
|
| 88 |
}
|
|
|
|
| 1 |
{
|
| 2 |
+
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| 4 |
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| 5 |
"all_val_losses_tr_mode": "[]",
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| 6 |
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|
| 7 |
+
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|
| 8 |
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|
| 9 |
"basic_generator_patch_size": "[205 205 205]",
|
| 10 |
"batch_dice": "False",
|
| 11 |
"batch_size": "2",
|
| 12 |
+
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|
| 13 |
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|
| 14 |
+
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|
| 15 |
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|
| 16 |
"conv_per_stage": "2",
|
| 17 |
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|
| 18 |
"dataset_directory": "/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026",
|
| 19 |
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|
| 20 |
"deterministic": "False",
|
| 21 |
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"dl_tr": "<nnunet_mednext.training.dataloading.dataset_loading.DataLoader3D object at 0x7ff589f1e3c0>",
|
| 22 |
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|
| 23 |
"do_dummy_2D_aug": "False",
|
| 24 |
"ds_loss_weights": "[0.51612903 0.25806452 0.12903226 0.06451613 0.03225806 0. ]",
|
| 25 |
+
"epoch": "300",
|
| 26 |
"experiment_name": "nnUNetTrainerV2_MedNeXt_B_kernel3",
|
| 27 |
"fold": "0",
|
| 28 |
"folder_with_preprocessed_data": "/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026/nnUNetData_plans_v2.1_trgSp_1x1x1_stage0",
|
|
|
|
| 32 |
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|
| 33 |
"init_args": "('/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026/nnUNetPlansv2.1_trgSp_1x1x1_plans_3D.pkl', 0, '/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1', '/marimo/TopBrain2026/nnUNet_preprocessed/Task001_Brain2026', False, 0, True, False, True)",
|
| 34 |
"initial_lr": "0.001",
|
| 35 |
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|
| 36 |
"lr_scheduler": "None",
|
| 37 |
"lr_scheduler_eps": "0.001",
|
| 38 |
"lr_scheduler_patience": "30",
|
|
|
|
| 53 |
"online_eval_fp": "[]",
|
| 54 |
"online_eval_tp": "[]",
|
| 55 |
"only_keep_largest_connected_component": "None",
|
| 56 |
+
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|
| 57 |
"output_folder": "/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1/fold_0",
|
| 58 |
"output_folder_base": "/marimo/TopBrain2026/nnUNet_results/nnUNet/3d_fullres/Task001_Brain2026/nnUNetTrainerV2_MedNeXt_B_kernel3__nnUNetPlansv2.1_trgSp_1x1x1",
|
| 59 |
"oversample_foreground_percent": "0.33",
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|
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|
| 71 |
"save_latest_only": "True",
|
| 72 |
"stage": "0",
|
| 73 |
"threeD": "True",
|
| 74 |
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| 75 |
"train_loss_MA": "None",
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| 76 |
"train_loss_MA_alpha": "0.93",
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| 77 |
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| 87 |
"weight_decay": "3e-05"
|
| 88 |
}
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