Delete checkpoints/chexpert-plus/report generation/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20-best/log_2026_02_19_20.log
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checkpoints/chexpert-plus/report generation/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20-best/log_2026_02_19_20.log
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task: train-language-model
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phase: finetune
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data_name: chexpert-plus
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ann_path: /home/server/kang_liu/dataset/CheXpert-Plus/chexpert-plus-annotation-previous-image.json
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view_position_path: /home/server/kang_liu/MIMIC-CXR/view-positions-dict.json
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images_dir: /home/server/kang_liu/dataset/CheXpert-Plus/PNG
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english_report: True
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max_length: 100
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encoder_max_length: 300
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num_workers: 10
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epochs: 50
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batch_size: 32
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num_gpus: 1
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patience: 5
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save_best_model: True
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online_checkpoint: False
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ckpt_zoo_dir: /home/server/kang_liu/checkpoints
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text_encoder_num_blocks: 6
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temporal_fusion_num_blocks: 3
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perceiver_num_blocks: 3
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num_heads: 8
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num_latents: 128
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lr: 5e-05
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monitor_metric: RCB
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hidden_size: 768
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resume: None
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load: /home/server/kang_liu/PriorRG-v2/script/results/mimic_cxr/train-language-model/v1207-gpt2_2025_12_07_15/checkpoint/epoch=14-step=56295_temp.ckpt
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test_ckpt_path: None
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version: v1231-gpt2-load-mimic-rg-new-lr-patience5
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| 30 |
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chexbert_path: /home/server/kang_liu/checkpoints/chexbert.pth
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| 31 |
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bert_path: /home/server/kang_liu/checkpoints/google-bert/bert-base-uncased
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| 32 |
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radgraph_path: /home/server/kang_liu/checkpoints/radgraph
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| 33 |
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cxr_bert_path: /home/server/kang_liu/checkpoints/microsoft/BiomedVLP-CXR-BERT-specialized
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rad_dino_path: /home/server/kang_liu/checkpoints/microsoft/rad-dino
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| 35 |
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medsiglip_path: /home/server/kang_liu/checkpoints/google/medsiglip-448
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| 36 |
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llama_path: /home/server/kang_liu/checkpoints/meta-llama/Llama-3.2-3B-Instruct
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| 37 |
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distilgpt2_path: /home/server/kang_liu/checkpoints/distilbert/distilgpt2
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seed: 9233
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| 39 |
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num_beams: 10
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| 40 |
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save_period: 1
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exp_dir_trial: results/chexpert-plus/train-language-model/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20
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print_step: 500
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prior_knowledge_type: prior-image
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prior_knowledge_ratio: 1
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device: cuda
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monitor_mode: max
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checkpoint_dir: results/chexpert-plus/train-language-model/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20/checkpoint
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time: 2026_02_19_20
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No. of training & validation examples: 59367 & 74.
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Epoch 0, validation step 0/3
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The best model is saved on epoch 0!
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###############################################################
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| 54 |
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Epoch 0, Validation is over, current metrics:
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| 55 |
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best validation epoch: 0, best val_metrics: RCB = 0.7128899192849105
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| 56 |
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F1-Radgraph-partial: 0.16773394889465398
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| 57 |
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F1-Radgraph-simple: 0.195410790298365
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| 58 |
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F1-Radgraph-complete: 0.11974284925237204
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| 59 |
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chexbert_5_micro_f1: 0.47058823529411764
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| 60 |
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chexbert_5_macro_f1: 0.44688642674123613
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| 61 |
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chexbert_all_micro_p: 0.591304347826087
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| 62 |
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chexbert_all_micro_r: 0.40476190476190477
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| 63 |
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chexbert_all_micro_f1: 0.48056537102473496
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| 64 |
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chexbert_all_macro_p: 0.3918007762545578
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| 65 |
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chexbert_all_macro_r: 0.3066650250697324
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| 66 |
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chexbert_all_macro_f1: 0.3085027926873921
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| 67 |
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chexbert_accuracy: 0.296875
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| 68 |
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chen_bleu_1: 0.31230658442289705
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| 69 |
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chen_bleu_2: 0.1715793117816511
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chen_bleu_3: 0.1039014558476197
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chen_bleu_4: 0.06459059936552158
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chen_meteor: 0.12491228400522707
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| 73 |
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chen_rouge: 0.216659458199761
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| 74 |
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chen_num_examples: 55
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| 75 |
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RB: 0.23232454826017557
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| 76 |
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RC: 0.6482993199193889
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| 77 |
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RCB: 0.7128899192849105
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| 78 |
-
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| 79 |
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Epoch 0, training step 0/1855, 6.356, lr: 5e-05
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| 80 |
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Epoch 0, training step 500/1855, 2.213, lr: 5e-05
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| 81 |
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Epoch 0, training step 1000/1855, 1.929, lr: 5e-05
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Epoch 0, training step 1500/1855, 1.7, lr: 5e-05
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| 83 |
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Epoch 0, training step 1854/1855, 1.851, lr: 5e-05
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| 84 |
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Epoch 0, validation step 0/3
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| 85 |
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Epoch 0, validation step 2/3
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| 86 |
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The best model is saved on epoch 0!
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###############################################################
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| 88 |
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Epoch 0, Validation is over, current metrics:
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best validation epoch: 0, best val_metrics: RCB = 0.7581469642157972
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| 90 |
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F1-Radgraph-partial: 0.2054309579005303
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| 91 |
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F1-Radgraph-simple: 0.22580553030912281
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| 92 |
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F1-Radgraph-complete: 0.15449605590579343
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| 93 |
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chexbert_5_micro_f1: 0.3624161073825503
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| 94 |
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chexbert_5_macro_f1: 0.2929185709371468
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| 95 |
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chexbert_all_micro_p: 0.4934210526315789
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| 96 |
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chexbert_all_micro_r: 0.4166666666666667
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| 97 |
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chexbert_all_micro_f1: 0.45180722891566266
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| 98 |
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chexbert_all_macro_p: 0.3059278440857388
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| 99 |
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chexbert_all_macro_r: 0.29423477524981284
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| 100 |
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chexbert_all_macro_f1: 0.28042238839740674
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| 101 |
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chexbert_accuracy: 0.24324324324324326
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| 102 |
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chen_bleu_1: 0.33518523086873153
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| 103 |
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chen_bleu_2: 0.20813963673881455
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| 104 |
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chen_bleu_3: 0.14227959672792104
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| 105 |
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chen_bleu_4: 0.10090877739960431
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| 106 |
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chen_meteor: 0.138550494374325
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| 107 |
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chen_rouge: 0.24058342958834694
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| 108 |
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chen_num_examples: 62
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| 109 |
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RB: 0.3063397353001346
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| 110 |
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RC: 0.657238186816193
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| 111 |
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RCB: 0.7581469642157972
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| 112 |
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| 113 |
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Epoch 0, Training is over, training epoch loss = 2.1213018894195557, lr: 5e-05. Epoch training time: 3411.0294868946075 seconds
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###############################################################
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| 115 |
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Epoch 1, training step 0/1855, 1.841, lr: 5e-05
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| 116 |
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Epoch 1, training step 500/1855, 1.678, lr: 5e-05
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| 117 |
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Epoch 1, training step 1000/1855, 1.451, lr: 5e-05
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| 118 |
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Epoch 1, training step 1500/1855, 1.654, lr: 5e-05
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| 119 |
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Epoch 1, training step 1854/1855, 1.659, lr: 5e-05
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Epoch 1, validation step 0/3
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Epoch 1, validation step 2/3
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The best model is saved on epoch 1!
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###############################################################
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Epoch 1, Validation is over, current metrics:
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best validation epoch: 1, best val_metrics: RCB = 0.7788732702417003
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| 126 |
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F1-Radgraph-partial: 0.22222291034779193
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| 127 |
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F1-Radgraph-simple: 0.24409066849359246
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| 128 |
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F1-Radgraph-complete: 0.16146498670148637
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| 129 |
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chexbert_5_micro_f1: 0.3356643356643357
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chexbert_5_macro_f1: 0.26119047619047614
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| 131 |
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chexbert_all_micro_p: 0.4691358024691358
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| 132 |
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chexbert_all_micro_r: 0.4222222222222222
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| 133 |
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chexbert_all_micro_f1: 0.4444444444444444
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| 134 |
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chexbert_all_macro_p: 0.30525269579635544
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| 135 |
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chexbert_all_macro_r: 0.29563877225531365
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| 136 |
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chexbert_all_macro_f1: 0.2848051650730222
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| 137 |
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chexbert_accuracy: 0.25675675675675674
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| 138 |
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chen_bleu_1: 0.3396723156224136
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| 139 |
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chen_bleu_2: 0.21620845938340802
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| 140 |
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chen_bleu_3: 0.1519208657945907
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| 141 |
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chen_bleu_4: 0.11220591544946396
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| 142 |
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chen_meteor: 0.14666781287194652
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| 143 |
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chen_rouge: 0.2688448435334641
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| 144 |
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chen_num_examples: 62
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| 145 |
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RB: 0.33442882579725586
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RC: 0.6666673547922364
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RCB: 0.7788732702417003
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Epoch 1, Training is over, training epoch loss = 1.632585048675537, lr: 5e-05. Epoch training time: 3272.9845497608185 seconds
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###############################################################
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Epoch 2, training step 0/1855, 1.49, lr: 5e-05
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Epoch 2, training step 500/1855, 1.478, lr: 5e-05
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| 153 |
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Epoch 2, training step 1000/1855, 1.441, lr: 5e-05
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Epoch 2, training step 1500/1855, 1.486, lr: 5e-05
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Epoch 2, training step 1854/1855, 1.546, lr: 5e-05
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Epoch 2, validation step 0/3
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Epoch 2, validation step 2/3
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The best model is saved on epoch 2!
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###############################################################
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Epoch 2, Validation is over, current metrics:
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best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
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F1-Radgraph-partial: 0.22296392930797204
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F1-Radgraph-simple: 0.2442942276488967
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F1-Radgraph-complete: 0.1702995502821575
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chexbert_5_micro_f1: 0.4383561643835616
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chexbert_5_macro_f1: 0.36282724947686584
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chexbert_all_micro_p: 0.525
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| 168 |
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chexbert_all_micro_r: 0.4666666666666667
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chexbert_all_micro_f1: 0.49411764705882355
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chexbert_all_macro_p: 0.34258893280632413
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| 171 |
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chexbert_all_macro_r: 0.31049018650522414
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chexbert_all_macro_f1: 0.30954162956355136
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chexbert_accuracy: 0.3108108108108108
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| 174 |
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chen_bleu_1: 0.34954910573236325
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chen_bleu_2: 0.22866069714001924
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chen_bleu_3: 0.16358887079618845
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chen_bleu_4: 0.12261481323423262
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chen_meteor: 0.15030966114946268
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chen_rouge: 0.2736999076715437
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| 180 |
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chen_num_examples: 62
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RB: 0.34557874254220466
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RC: 0.7170815763667956
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RCB: 0.8396963896010282
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Epoch 2, Training is over, training epoch loss = 1.4905798435211182, lr: 5e-05. Epoch training time: 3278.290989637375 seconds
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###############################################################
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Epoch 3, training step 0/1855, 1.334, lr: 5e-05
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Epoch 3, training step 500/1855, 1.43, lr: 5e-05
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Epoch 3, training step 1000/1855, 1.391, lr: 5e-05
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Epoch 3, training step 1500/1855, 1.415, lr: 5e-05
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Epoch 3, training step 1854/1855, 1.339, lr: 5e-05
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Epoch 3, validation step 0/3
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Epoch 3, validation step 2/3
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###############################################################
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Epoch 3, Validation is over, current metrics:
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best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
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F1-Radgraph-partial: 0.22944968456745854
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F1-Radgraph-simple: 0.250578446482917
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F1-Radgraph-complete: 0.16737010117674994
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chexbert_5_micro_f1: 0.36
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chexbert_5_macro_f1: 0.3104300851580692
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chexbert_all_micro_p: 0.4785276073619632
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chexbert_all_micro_r: 0.43333333333333335
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chexbert_all_micro_f1: 0.45481049562682213
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chexbert_all_macro_p: 0.3411169518312375
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chexbert_all_macro_r: 0.33256968178020807
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chexbert_all_macro_f1: 0.312538067970267
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chexbert_accuracy: 0.2972972972972973
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chen_bleu_1: 0.366955215733812
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chen_bleu_2: 0.24056494090065836
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chen_bleu_3: 0.17166744789627206
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chen_bleu_4: 0.1273661835505716
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chen_meteor: 0.15847455872775007
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chen_rouge: 0.2718180280620476
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chen_num_examples: 62
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RB: 0.3568158681180301
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RC: 0.6842601801942807
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RCB: 0.8116263637448522
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Epoch 3, Training is over, training epoch loss = 1.3825280666351318, lr: 5e-05. Epoch training time: 3431.1623187065125 seconds
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###############################################################
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Epoch 4, training step 0/1855, 1.316, lr: 5e-05
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Epoch 4, training step 500/1855, 1.173, lr: 5e-05
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Epoch 4, training step 1000/1855, 1.254, lr: 5e-05
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Epoch 4, training step 1500/1855, 1.568, lr: 5e-05
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Epoch 4, training step 1854/1855, 1.265, lr: 5e-05
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Epoch 4, validation step 0/3
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Epoch 4, validation step 2/3
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###############################################################
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Epoch 4, Validation is over, current metrics:
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best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
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F1-Radgraph-partial: 0.22571158110052036
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F1-Radgraph-simple: 0.2428537039169649
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F1-Radgraph-complete: 0.1708963462658373
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chexbert_5_micro_f1: 0.40816326530612246
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chexbert_5_macro_f1: 0.3642238713667285
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chexbert_all_micro_p: 0.49079754601226994
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chexbert_all_micro_r: 0.4444444444444444
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chexbert_all_micro_f1: 0.46647230320699706
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chexbert_all_macro_p: 0.3213445681302825
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chexbert_all_macro_r: 0.3084252839891938
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chexbert_all_macro_f1: 0.29984543039626493
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chexbert_accuracy: 0.2972972972972973
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| 244 |
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chen_bleu_1: 0.35054308423207614
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chen_bleu_2: 0.2276837717277895
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chen_bleu_3: 0.16244291046065298
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chen_bleu_4: 0.12382016436943244
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chen_meteor: 0.15011542268010536
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chen_rouge: 0.2688574375927487
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chen_num_examples: 62
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RB: 0.3495317454699528
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RC: 0.6921838843075174
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RCB: 0.8160040486769499
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Epoch 4, Training is over, training epoch loss = 1.2729856967926025, lr: 5e-05. Epoch training time: 3313.8814165592194 seconds
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###############################################################
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Epoch 5, training step 0/1855, 1.068, lr: 5e-05
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Epoch 5, training step 500/1855, 1.295, lr: 5e-05
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Epoch 5, training step 1000/1855, 1.153, lr: 5e-05
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Epoch 5, training step 1500/1855, 1.106, lr: 5e-05
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Epoch 5, training step 1854/1855, 1.166, lr: 5e-05
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Epoch 5, validation step 0/3
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Epoch 5, validation step 2/3
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###############################################################
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Epoch 5, Validation is over, current metrics:
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best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
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F1-Radgraph-partial: 0.2104520181119516
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F1-Radgraph-simple: 0.23583850351928914
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F1-Radgraph-complete: 0.16197533557860835
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| 270 |
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chexbert_5_micro_f1: 0.4025974025974026
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chexbert_5_macro_f1: 0.3745169082125604
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chexbert_all_micro_p: 0.5151515151515151
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chexbert_all_micro_r: 0.4722222222222222
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chexbert_all_micro_f1: 0.4927536231884058
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chexbert_all_macro_p: 0.37518949584723976
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chexbert_all_macro_r: 0.30578177044342464
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chexbert_all_macro_f1: 0.3185596609509653
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| 278 |
-
chexbert_accuracy: 0.25675675675675674
|
| 279 |
-
chen_bleu_1: 0.348775169262384
|
| 280 |
-
chen_bleu_2: 0.22759996928856854
|
| 281 |
-
chen_bleu_3: 0.16008565100408526
|
| 282 |
-
chen_bleu_4: 0.11783655790035427
|
| 283 |
-
chen_meteor: 0.1556787550671602
|
| 284 |
-
chen_rouge: 0.2626379098597724
|
| 285 |
-
chen_num_examples: 62
|
| 286 |
-
RB: 0.3282885760123059
|
| 287 |
-
RC: 0.7032056413003575
|
| 288 |
-
RCB: 0.8210421992007118
|
| 289 |
-
|
| 290 |
-
Epoch 5, Training is over, training epoch loss = 1.1555395126342773, lr: 5e-05. Epoch training time: 3336.533994913101 seconds
|
| 291 |
-
###############################################################
|
| 292 |
-
Epoch 6, training step 0/1855, 1.211, lr: 5e-05
|
| 293 |
-
Epoch 6, training step 500/1855, 1.021, lr: 5e-05
|
| 294 |
-
Epoch 6, training step 1000/1855, 1.122, lr: 5e-05
|
| 295 |
-
Epoch 6, training step 1500/1855, 0.966, lr: 5e-05
|
| 296 |
-
Epoch 6, training step 1854/1855, 0.972, lr: 5e-05
|
| 297 |
-
Epoch 6, validation step 0/3
|
| 298 |
-
Epoch 6, validation step 2/3
|
| 299 |
-
The best model is saved on epoch 6!
|
| 300 |
-
###############################################################
|
| 301 |
-
Epoch 6, Validation is over, current metrics:
|
| 302 |
-
best validation epoch: 6, best val_metrics: RCB = 0.8454387528294205
|
| 303 |
-
F1-Radgraph-partial: 0.21377494003215572
|
| 304 |
-
F1-Radgraph-simple: 0.23321029232454
|
| 305 |
-
F1-Radgraph-complete: 0.1618291767596106
|
| 306 |
-
chexbert_5_micro_f1: 0.43312101910828027
|
| 307 |
-
chexbert_5_macro_f1: 0.3985867074102368
|
| 308 |
-
chexbert_all_micro_p: 0.5141242937853108
|
| 309 |
-
chexbert_all_micro_r: 0.5055555555555555
|
| 310 |
-
chexbert_all_micro_f1: 0.5098039215686274
|
| 311 |
-
chexbert_all_macro_p: 0.3394181279549943
|
| 312 |
-
chexbert_all_macro_r: 0.3291657173236121
|
| 313 |
-
chexbert_all_macro_f1: 0.32207675057696417
|
| 314 |
-
chexbert_accuracy: 0.28378378378378377
|
| 315 |
-
chen_bleu_1: 0.351007708408334
|
| 316 |
-
chen_bleu_2: 0.23260142904459505
|
| 317 |
-
chen_bleu_3: 0.16488975891178295
|
| 318 |
-
chen_bleu_4: 0.12185989122863732
|
| 319 |
-
chen_meteor: 0.1556922512226225
|
| 320 |
-
chen_rouge: 0.2690694086877414
|
| 321 |
-
chen_num_examples: 62
|
| 322 |
-
RB: 0.335634831260793
|
| 323 |
-
RC: 0.7235788616007831
|
| 324 |
-
RCB: 0.8454387528294205
|
| 325 |
-
|
| 326 |
-
Epoch 6, Training is over, training epoch loss = 1.0451730489730835, lr: 5e-05. Epoch training time: 3565.302356004715 seconds
|
| 327 |
-
###############################################################
|
| 328 |
-
Epoch 7, training step 0/1855, 0.937, lr: 5e-05
|
| 329 |
-
Epoch 7, training step 500/1855, 0.984, lr: 5e-05
|
| 330 |
-
Epoch 7, training step 1000/1855, 0.946, lr: 5e-05
|
| 331 |
-
Epoch 7, training step 1500/1855, 1.003, lr: 5e-05
|
| 332 |
-
Epoch 7, training step 1854/1855, 0.954, lr: 5e-05
|
| 333 |
-
Epoch 7, validation step 0/3
|
| 334 |
-
Epoch 7, validation step 2/3
|
| 335 |
-
The best model is saved on epoch 7!
|
| 336 |
-
###############################################################
|
| 337 |
-
Epoch 7, Validation is over, current metrics:
|
| 338 |
-
best validation epoch: 7, best val_metrics: RCB = 0.8633592256171855
|
| 339 |
-
F1-Radgraph-partial: 0.20452139989293763
|
| 340 |
-
F1-Radgraph-simple: 0.2225077461545921
|
| 341 |
-
F1-Radgraph-complete: 0.15282023981687623
|
| 342 |
-
chexbert_5_micro_f1: 0.46060606060606063
|
| 343 |
-
chexbert_5_macro_f1: 0.43863187722572033
|
| 344 |
-
chexbert_all_micro_p: 0.518324607329843
|
| 345 |
-
chexbert_all_micro_r: 0.55
|
| 346 |
-
chexbert_all_micro_f1: 0.5336927223719676
|
| 347 |
-
chexbert_all_macro_p: 0.36302998996847924
|
| 348 |
-
chexbert_all_macro_r: 0.39041299135284097
|
| 349 |
-
chexbert_all_macro_f1: 0.362561033487406
|
| 350 |
-
chexbert_accuracy: 0.2972972972972973
|
| 351 |
-
chen_bleu_1: 0.3660310705182532
|
| 352 |
-
chen_bleu_2: 0.23923196199594268
|
| 353 |
-
chen_bleu_3: 0.16965656704017723
|
| 354 |
-
chen_bleu_4: 0.1251451033522802
|
| 355 |
-
chen_meteor: 0.15896443100790422
|
| 356 |
-
chen_rouge: 0.2745260003662961
|
| 357 |
-
chen_num_examples: 62
|
| 358 |
-
RB: 0.32966650324521785
|
| 359 |
-
RC: 0.7382141222649052
|
| 360 |
-
RCB: 0.8633592256171855
|
| 361 |
-
|
| 362 |
-
Epoch 7, Training is over, training epoch loss = 0.9423288702964783, lr: 5e-05. Epoch training time: 3317.7727003097534 seconds
|
| 363 |
-
###############################################################
|
| 364 |
-
Epoch 8, training step 0/1855, 0.904, lr: 5e-05
|
| 365 |
-
Epoch 8, training step 500/1855, 0.773, lr: 5e-05
|
| 366 |
-
Epoch 8, training step 1000/1855, 1.004, lr: 5e-05
|
| 367 |
-
Epoch 8, training step 1500/1855, 0.951, lr: 5e-05
|
| 368 |
-
Epoch 8, training step 1854/1855, 0.859, lr: 5e-05
|
| 369 |
-
Epoch 8, validation step 0/3
|
| 370 |
-
Epoch 8, validation step 2/3
|
| 371 |
-
###############################################################
|
| 372 |
-
Epoch 8, Validation is over, current metrics:
|
| 373 |
-
best validation epoch: 7, best val_metrics: RCB = 0.8633592256171855
|
| 374 |
-
F1-Radgraph-partial: 0.2095601755353686
|
| 375 |
-
F1-Radgraph-simple: 0.23786859077395142
|
| 376 |
-
F1-Radgraph-complete: 0.15973690788597364
|
| 377 |
-
chexbert_5_micro_f1: 0.4276729559748428
|
| 378 |
-
chexbert_5_macro_f1: 0.3902937642068077
|
| 379 |
-
chexbert_all_micro_p: 0.5251396648044693
|
| 380 |
-
chexbert_all_micro_r: 0.5222222222222223
|
| 381 |
-
chexbert_all_micro_f1: 0.5236768802228412
|
| 382 |
-
chexbert_all_macro_p: 0.4142318510982106
|
| 383 |
-
chexbert_all_macro_r: 0.3639725938222179
|
| 384 |
-
chexbert_all_macro_f1: 0.36840241974138727
|
| 385 |
-
chexbert_accuracy: 0.28378378378378377
|
| 386 |
-
chen_bleu_1: 0.3446166507338335
|
| 387 |
-
chen_bleu_2: 0.2211358837799951
|
| 388 |
-
chen_bleu_3: 0.15569240627806558
|
| 389 |
-
chen_bleu_4: 0.11316636258764776
|
| 390 |
-
chen_meteor: 0.1536064844415331
|
| 391 |
-
chen_rouge: 0.2641348602085754
|
| 392 |
-
chen_num_examples: 62
|
| 393 |
-
RB: 0.3227265381230163
|
| 394 |
-
RC: 0.7332370557582097
|
| 395 |
-
RCB: 0.8464034183458575
|
| 396 |
-
|
| 397 |
-
Epoch 8, Training is over, training epoch loss = 0.8553245067596436, lr: 5e-05. Epoch training time: 3165.634534597397 seconds
|
| 398 |
-
###############################################################
|
| 399 |
-
Epoch 9, training step 0/1855, 0.86, lr: 5e-05
|
| 400 |
-
Epoch 9, training step 500/1855, 0.744, lr: 5e-05
|
| 401 |
-
Epoch 9, training step 1000/1855, 0.934, lr: 5e-05
|
| 402 |
-
Epoch 9, training step 1500/1855, 0.823, lr: 5e-05
|
| 403 |
-
Epoch 9, training step 1854/1855, 0.722, lr: 5e-05
|
| 404 |
-
Epoch 9, validation step 0/3
|
| 405 |
-
Epoch 9, validation step 2/3
|
| 406 |
-
The best model is saved on epoch 9!
|
| 407 |
-
###############################################################
|
| 408 |
-
Epoch 9, Validation is over, current metrics:
|
| 409 |
-
best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
|
| 410 |
-
F1-Radgraph-partial: 0.19972788342299275
|
| 411 |
-
F1-Radgraph-simple: 0.23219854869722778
|
| 412 |
-
F1-Radgraph-complete: 0.152644218918469
|
| 413 |
-
chexbert_5_micro_f1: 0.4888888888888889
|
| 414 |
-
chexbert_5_macro_f1: 0.46671447030495444
|
| 415 |
-
chexbert_all_micro_p: 0.5380710659898477
|
| 416 |
-
chexbert_all_micro_r: 0.5888888888888889
|
| 417 |
-
chexbert_all_micro_f1: 0.5623342175066313
|
| 418 |
-
chexbert_all_macro_p: 0.4014816373190757
|
| 419 |
-
chexbert_all_macro_r: 0.4218285432195206
|
| 420 |
-
chexbert_all_macro_f1: 0.4011878473251877
|
| 421 |
-
chexbert_accuracy: 0.2702702702702703
|
| 422 |
-
chen_bleu_1: 0.354796183588271
|
| 423 |
-
chen_bleu_2: 0.22913221248992194
|
| 424 |
-
chen_bleu_3: 0.16177322277471629
|
| 425 |
-
chen_bleu_4: 0.11763788657622337
|
| 426 |
-
chen_meteor: 0.1551498980852446
|
| 427 |
-
chen_rouge: 0.26971463386849304
|
| 428 |
-
chen_num_examples: 62
|
| 429 |
-
RB: 0.3173657699992161
|
| 430 |
-
RC: 0.762062100929624
|
| 431 |
-
RCB: 0.8796999875058473
|
| 432 |
-
|
| 433 |
-
Epoch 9, Training is over, training epoch loss = 0.7797667980194092, lr: 5e-05. Epoch training time: 3303.1085772514343 seconds
|
| 434 |
-
###############################################################
|
| 435 |
-
Epoch 10, training step 0/1855, 0.765, lr: 5e-05
|
| 436 |
-
Epoch 10, training step 500/1855, 0.641, lr: 5e-05
|
| 437 |
-
Epoch 10, training step 1000/1855, 0.684, lr: 5e-05
|
| 438 |
-
Epoch 10, training step 1500/1855, 0.795, lr: 5e-05
|
| 439 |
-
Epoch 10, training step 1854/1855, 0.836, lr: 5e-05
|
| 440 |
-
Epoch 10, validation step 0/3
|
| 441 |
-
Epoch 10, validation step 2/3
|
| 442 |
-
###############################################################
|
| 443 |
-
Epoch 10, Validation is over, current metrics:
|
| 444 |
-
best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
|
| 445 |
-
F1-Radgraph-partial: 0.1992894482296047
|
| 446 |
-
F1-Radgraph-simple: 0.22519366622545012
|
| 447 |
-
F1-Radgraph-complete: 0.14662290945656212
|
| 448 |
-
chexbert_5_micro_f1: 0.4161849710982659
|
| 449 |
-
chexbert_5_macro_f1: 0.3804093567251462
|
| 450 |
-
chexbert_all_micro_p: 0.4717948717948718
|
| 451 |
-
chexbert_all_micro_r: 0.5111111111111111
|
| 452 |
-
chexbert_all_micro_f1: 0.49066666666666664
|
| 453 |
-
chexbert_all_macro_p: 0.32401906275330644
|
| 454 |
-
chexbert_all_macro_r: 0.34128074515292567
|
| 455 |
-
chexbert_all_macro_f1: 0.32003761693611316
|
| 456 |
-
chexbert_accuracy: 0.20270270270270271
|
| 457 |
-
chen_bleu_1: 0.35126010727716905
|
| 458 |
-
chen_bleu_2: 0.22330124084144842
|
| 459 |
-
chen_bleu_3: 0.15632463281573358
|
| 460 |
-
chen_bleu_4: 0.1142193367543019
|
| 461 |
-
chen_meteor: 0.15430710584101837
|
| 462 |
-
chen_rouge: 0.2537626840525148
|
| 463 |
-
chen_num_examples: 62
|
| 464 |
-
RB: 0.3135087849839066
|
| 465 |
-
RC: 0.6899561148962714
|
| 466 |
-
RCB: 0.8041754516505732
|
| 467 |
-
|
| 468 |
-
Epoch 10, Training is over, training epoch loss = 0.7102962136268616, lr: 5e-05. Epoch training time: 3169.5202717781067 seconds
|
| 469 |
-
###############################################################
|
| 470 |
-
Epoch 11, training step 0/1855, 0.729, lr: 5e-05
|
| 471 |
-
Epoch 11, training step 500/1855, 0.568, lr: 5e-05
|
| 472 |
-
Epoch 11, training step 1000/1855, 0.713, lr: 5e-05
|
| 473 |
-
Epoch 11, training step 1500/1855, 0.644, lr: 5e-05
|
| 474 |
-
Epoch 11, training step 1854/1855, 0.653, lr: 5e-05
|
| 475 |
-
Epoch 11, validation step 0/3
|
| 476 |
-
Epoch 11, validation step 2/3
|
| 477 |
-
###############################################################
|
| 478 |
-
Epoch 11, Validation is over, current metrics:
|
| 479 |
-
best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
|
| 480 |
-
F1-Radgraph-partial: 0.21475044799880041
|
| 481 |
-
F1-Radgraph-simple: 0.2364068314955351
|
| 482 |
-
F1-Radgraph-complete: 0.1621375710198932
|
| 483 |
-
chexbert_5_micro_f1: 0.44047619047619047
|
| 484 |
-
chexbert_5_macro_f1: 0.43222111222111226
|
| 485 |
-
chexbert_all_micro_p: 0.4972972972972973
|
| 486 |
-
chexbert_all_micro_r: 0.5111111111111111
|
| 487 |
-
chexbert_all_micro_f1: 0.5041095890410959
|
| 488 |
-
chexbert_all_macro_p: 0.3322562358276645
|
| 489 |
-
chexbert_all_macro_r: 0.3310574596664822
|
| 490 |
-
chexbert_all_macro_f1: 0.32393524395404094
|
| 491 |
-
chexbert_accuracy: 0.28378378378378377
|
| 492 |
-
chen_bleu_1: 0.3567271295314524
|
| 493 |
-
chen_bleu_2: 0.23296514394745924
|
| 494 |
-
chen_bleu_3: 0.16453050794947513
|
| 495 |
-
chen_bleu_4: 0.121202788764822
|
| 496 |
-
chen_meteor: 0.15688277135102827
|
| 497 |
-
chen_rouge: 0.2690422702986062
|
| 498 |
-
chen_num_examples: 62
|
| 499 |
-
RB: 0.33595323676362243
|
| 500 |
-
RC: 0.7188600370398963
|
| 501 |
-
RCB: 0.8400628258047184
|
| 502 |
-
|
| 503 |
-
Epoch 11, Training is over, training epoch loss = 0.6462647914886475, lr: 5e-05. Epoch training time: 3382.2880659103394 seconds
|
| 504 |
-
###############################################################
|
| 505 |
-
Epoch 12, training step 0/1855, 0.571, lr: 5e-05
|
| 506 |
-
Epoch 12, training step 500/1855, 0.454, lr: 5e-05
|
| 507 |
-
Epoch 12, training step 1000/1855, 0.573, lr: 5e-05
|
| 508 |
-
Epoch 12, training step 1500/1855, 0.683, lr: 5e-05
|
| 509 |
-
Epoch 12, training step 1854/1855, 0.59, lr: 5e-05
|
| 510 |
-
Epoch 12, validation step 0/3
|
| 511 |
-
Epoch 12, validation step 2/3
|
| 512 |
-
The best model is saved on epoch 12!
|
| 513 |
-
###############################################################
|
| 514 |
-
Epoch 12, Validation is over, current metrics:
|
| 515 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 516 |
-
F1-Radgraph-partial: 0.21346428762310224
|
| 517 |
-
F1-Radgraph-simple: 0.2374007763791543
|
| 518 |
-
F1-Radgraph-complete: 0.16172873674084237
|
| 519 |
-
chexbert_5_micro_f1: 0.5384615384615384
|
| 520 |
-
chexbert_5_macro_f1: 0.5265643648763854
|
| 521 |
-
chexbert_all_micro_p: 0.5868263473053892
|
| 522 |
-
chexbert_all_micro_r: 0.5444444444444444
|
| 523 |
-
chexbert_all_micro_f1: 0.5648414985590778
|
| 524 |
-
chexbert_all_macro_p: 0.4335233860443944
|
| 525 |
-
chexbert_all_macro_r: 0.4097051611713266
|
| 526 |
-
chexbert_all_macro_f1: 0.411902970631918
|
| 527 |
-
chexbert_accuracy: 0.32432432432432434
|
| 528 |
-
chen_bleu_1: 0.34976570841803306
|
| 529 |
-
chen_bleu_2: 0.2203744448483044
|
| 530 |
-
chen_bleu_3: 0.15471346102479588
|
| 531 |
-
chen_bleu_4: 0.11218559808059807
|
| 532 |
-
chen_meteor: 0.14848611892190736
|
| 533 |
-
chen_rouge: 0.26404931819454563
|
| 534 |
-
chen_num_examples: 62
|
| 535 |
-
RB: 0.3256498857037003
|
| 536 |
-
RC: 0.77830578618218
|
| 537 |
-
RCB: 0.8904913842627782
|
| 538 |
-
|
| 539 |
-
Epoch 12, Training is over, training epoch loss = 0.58570396900177, lr: 5e-05. Epoch training time: 3258.8526549339294 seconds
|
| 540 |
-
###############################################################
|
| 541 |
-
Epoch 13, training step 0/1855, 0.343, lr: 5e-05
|
| 542 |
-
Epoch 13, training step 500/1855, 0.565, lr: 5e-05
|
| 543 |
-
Epoch 13, training step 1000/1855, 0.55, lr: 5e-05
|
| 544 |
-
Epoch 13, training step 1500/1855, 0.49, lr: 5e-05
|
| 545 |
-
Epoch 13, training step 1854/1855, 0.581, lr: 5e-05
|
| 546 |
-
Epoch 13, validation step 0/3
|
| 547 |
-
Epoch 13, validation step 2/3
|
| 548 |
-
###############################################################
|
| 549 |
-
Epoch 13, Validation is over, current metrics:
|
| 550 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 551 |
-
F1-Radgraph-partial: 0.22166534962809928
|
| 552 |
-
F1-Radgraph-simple: 0.24854847264707447
|
| 553 |
-
F1-Radgraph-complete: 0.17090046632299813
|
| 554 |
-
chexbert_5_micro_f1: 0.43312101910828027
|
| 555 |
-
chexbert_5_macro_f1: 0.4127351908461353
|
| 556 |
-
chexbert_all_micro_p: 0.5089820359281437
|
| 557 |
-
chexbert_all_micro_r: 0.4722222222222222
|
| 558 |
-
chexbert_all_micro_f1: 0.4899135446685879
|
| 559 |
-
chexbert_all_macro_p: 0.33600460386174674
|
| 560 |
-
chexbert_all_macro_r: 0.30813901637209906
|
| 561 |
-
chexbert_all_macro_f1: 0.3088396094481447
|
| 562 |
-
chexbert_accuracy: 0.20270270270270271
|
| 563 |
-
chen_bleu_1: 0.3533298794495646
|
| 564 |
-
chen_bleu_2: 0.2280113596958507
|
| 565 |
-
chen_bleu_3: 0.16303476434759134
|
| 566 |
-
chen_bleu_4: 0.11990811636716939
|
| 567 |
-
chen_meteor: 0.15642998552986945
|
| 568 |
-
chen_rouge: 0.2692314678017771
|
| 569 |
-
chen_num_examples: 62
|
| 570 |
-
RB: 0.34157346599526867
|
| 571 |
-
RC: 0.7115788942966872
|
| 572 |
-
RCB: 0.8314870106638566
|
| 573 |
-
|
| 574 |
-
Epoch 13, Training is over, training epoch loss = 0.5284979939460754, lr: 5e-05. Epoch training time: 3251.961864709854 seconds
|
| 575 |
-
###############################################################
|
| 576 |
-
Epoch 14, training step 0/1855, 0.446, lr: 5e-05
|
| 577 |
-
Epoch 14, training step 500/1855, 0.475, lr: 5e-05
|
| 578 |
-
Epoch 14, training step 1000/1855, 0.426, lr: 5e-05
|
| 579 |
-
Epoch 14, training step 1500/1855, 0.546, lr: 5e-05
|
| 580 |
-
Epoch 14, training step 1854/1855, 0.512, lr: 5e-05
|
| 581 |
-
Epoch 14, validation step 0/3
|
| 582 |
-
Epoch 14, validation step 2/3
|
| 583 |
-
###############################################################
|
| 584 |
-
Epoch 14, Validation is over, current metrics:
|
| 585 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 586 |
-
F1-Radgraph-partial: 0.20269397917153106
|
| 587 |
-
F1-Radgraph-simple: 0.22783225810271748
|
| 588 |
-
F1-Radgraph-complete: 0.14776831330955664
|
| 589 |
-
chexbert_5_micro_f1: 0.4585987261146497
|
| 590 |
-
chexbert_5_macro_f1: 0.4558594006164339
|
| 591 |
-
chexbert_all_micro_p: 0.5151515151515151
|
| 592 |
-
chexbert_all_micro_r: 0.4722222222222222
|
| 593 |
-
chexbert_all_micro_f1: 0.4927536231884058
|
| 594 |
-
chexbert_all_macro_p: 0.39138136414673835
|
| 595 |
-
chexbert_all_macro_r: 0.3223175362649047
|
| 596 |
-
chexbert_all_macro_f1: 0.34305695252989243
|
| 597 |
-
chexbert_accuracy: 0.36486486486486486
|
| 598 |
-
chen_bleu_1: 0.3532023096465505
|
| 599 |
-
chen_bleu_2: 0.22729672383113422
|
| 600 |
-
chen_bleu_3: 0.1605252335513812
|
| 601 |
-
chen_bleu_4: 0.11766215044534757
|
| 602 |
-
chen_meteor: 0.15275664310351603
|
| 603 |
-
chen_rouge: 0.2697377782778773
|
| 604 |
-
chen_num_examples: 62
|
| 605 |
-
RB: 0.32035612961687865
|
| 606 |
-
RC: 0.6954476023599369
|
| 607 |
-
RCB: 0.8131097528052844
|
| 608 |
-
|
| 609 |
-
Epoch 14, Training is over, training epoch loss = 0.47589635848999023, lr: 5e-05. Epoch training time: 3524.114292860031 seconds
|
| 610 |
-
###############################################################
|
| 611 |
-
Epoch 15, training step 0/1855, 0.388, lr: 5e-05
|
| 612 |
-
Epoch 15, training step 500/1855, 0.38, lr: 5e-05
|
| 613 |
-
Epoch 15, training step 1000/1855, 0.548, lr: 5e-05
|
| 614 |
-
Epoch 15, training step 1500/1855, 0.406, lr: 5e-05
|
| 615 |
-
Epoch 15, training step 1854/1855, 0.521, lr: 5e-05
|
| 616 |
-
Epoch 15, validation step 0/3
|
| 617 |
-
Epoch 15, validation step 2/3
|
| 618 |
-
###############################################################
|
| 619 |
-
Epoch 15, Validation is over, current metrics:
|
| 620 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 621 |
-
F1-Radgraph-partial: 0.20006528397694634
|
| 622 |
-
F1-Radgraph-simple: 0.22319933977464823
|
| 623 |
-
F1-Radgraph-complete: 0.1399975799819895
|
| 624 |
-
chexbert_5_micro_f1: 0.5061728395061729
|
| 625 |
-
chexbert_5_macro_f1: 0.4589031910404815
|
| 626 |
-
chexbert_all_micro_p: 0.5657142857142857
|
| 627 |
-
chexbert_all_micro_r: 0.55
|
| 628 |
-
chexbert_all_micro_f1: 0.5577464788732395
|
| 629 |
-
chexbert_all_macro_p: 0.41968119155619155
|
| 630 |
-
chexbert_all_macro_r: 0.3984954811270601
|
| 631 |
-
chexbert_all_macro_f1: 0.3991504070565822
|
| 632 |
-
chexbert_accuracy: 0.35135135135135137
|
| 633 |
-
chen_bleu_1: 0.32904273021927166
|
| 634 |
-
chen_bleu_2: 0.20596314513558867
|
| 635 |
-
chen_bleu_3: 0.1425729504051587
|
| 636 |
-
chen_bleu_4: 0.1031871891594472
|
| 637 |
-
chen_meteor: 0.14752424331917288
|
| 638 |
-
chen_rouge: 0.25716151594150544
|
| 639 |
-
chen_num_examples: 62
|
| 640 |
-
RB: 0.30325247313639353
|
| 641 |
-
RC: 0.7578117628501858
|
| 642 |
-
RCB: 0.8609989520096331
|
| 643 |
-
|
| 644 |
-
Epoch 15, Training is over, training epoch loss = 0.4276135265827179, lr: 5e-05. Epoch training time: 3805.063766479492 seconds
|
| 645 |
-
###############################################################
|
| 646 |
-
Epoch 16, training step 0/1855, 0.478, lr: 5e-05
|
| 647 |
-
Epoch 16, training step 500/1855, 0.386, lr: 5e-05
|
| 648 |
-
Epoch 16, training step 1000/1855, 0.415, lr: 5e-05
|
| 649 |
-
Epoch 16, training step 1500/1855, 0.279, lr: 5e-05
|
| 650 |
-
Epoch 16, training step 1854/1855, 0.455, lr: 5e-05
|
| 651 |
-
Epoch 16, validation step 0/3
|
| 652 |
-
Epoch 16, validation step 2/3
|
| 653 |
-
###############################################################
|
| 654 |
-
Epoch 16, Validation is over, current metrics:
|
| 655 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 656 |
-
F1-Radgraph-partial: 0.19500457787528733
|
| 657 |
-
F1-Radgraph-simple: 0.22367288609052008
|
| 658 |
-
F1-Radgraph-complete: 0.14385065291721189
|
| 659 |
-
chexbert_5_micro_f1: 0.4157303370786517
|
| 660 |
-
chexbert_5_macro_f1: 0.4061367331222726
|
| 661 |
-
chexbert_all_micro_p: 0.46875
|
| 662 |
-
chexbert_all_micro_r: 0.5
|
| 663 |
-
chexbert_all_micro_f1: 0.4838709677419355
|
| 664 |
-
chexbert_all_macro_p: 0.30834223907532177
|
| 665 |
-
chexbert_all_macro_r: 0.3300599984810511
|
| 666 |
-
chexbert_all_macro_f1: 0.31018189528041745
|
| 667 |
-
chexbert_accuracy: 0.22972972972972974
|
| 668 |
-
chen_bleu_1: 0.3459906355606208
|
| 669 |
-
chen_bleu_2: 0.2196180823678822
|
| 670 |
-
chen_bleu_3: 0.1521887431354563
|
| 671 |
-
chen_bleu_4: 0.10987164409445438
|
| 672 |
-
chen_meteor: 0.1495198277824665
|
| 673 |
-
chen_rouge: 0.25902060035850816
|
| 674 |
-
chen_num_examples: 62
|
| 675 |
-
RB: 0.30487622196974173
|
| 676 |
-
RC: 0.6788755456172229
|
| 677 |
-
RCB: 0.7887471897116772
|
| 678 |
-
|
| 679 |
-
Epoch 16, Training is over, training epoch loss = 0.38339459896087646, lr: 5e-05. Epoch training time: 3775.7138345241547 seconds
|
| 680 |
-
###############################################################
|
| 681 |
-
Epoch 17, training step 0/1855, 0.365, lr: 5e-05
|
| 682 |
-
Epoch 17, training step 500/1855, 0.319, lr: 5e-05
|
| 683 |
-
Epoch 17, training step 1000/1855, 0.321, lr: 5e-05
|
| 684 |
-
Epoch 17, training step 1500/1855, 0.334, lr: 5e-05
|
| 685 |
-
Epoch 17, training step 1854/1855, 0.33, lr: 5e-05
|
| 686 |
-
Epoch 17, validation step 0/3
|
| 687 |
-
Epoch 17, validation step 2/3
|
| 688 |
-
###############################################################
|
| 689 |
-
Epoch 17, Validation is over, current metrics:
|
| 690 |
-
best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
|
| 691 |
-
F1-Radgraph-partial: 0.1825730540526958
|
| 692 |
-
F1-Radgraph-simple: 0.2008214815642524
|
| 693 |
-
F1-Radgraph-complete: 0.1249465253922876
|
| 694 |
-
chexbert_5_micro_f1: 0.4024390243902439
|
| 695 |
-
chexbert_5_macro_f1: 0.37110771581359814
|
| 696 |
-
chexbert_all_micro_p: 0.49707602339181284
|
| 697 |
-
chexbert_all_micro_r: 0.4722222222222222
|
| 698 |
-
chexbert_all_micro_f1: 0.4843304843304843
|
| 699 |
-
chexbert_all_macro_p: 0.3515516890516891
|
| 700 |
-
chexbert_all_macro_r: 0.32245847302238284
|
| 701 |
-
chexbert_all_macro_f1: 0.33082034217465656
|
| 702 |
-
chexbert_accuracy: 0.25675675675675674
|
| 703 |
-
chen_bleu_1: 0.3395538894554275
|
| 704 |
-
chen_bleu_2: 0.21285520719549617
|
| 705 |
-
chen_bleu_3: 0.14764517273851474
|
| 706 |
-
chen_bleu_4: 0.10717229564275034
|
| 707 |
-
chen_meteor: 0.14400912008824707
|
| 708 |
-
chen_rouge: 0.25011718923236953
|
| 709 |
-
chen_num_examples: 62
|
| 710 |
-
RB: 0.28974534969544613
|
| 711 |
-
RC: 0.6669035383831801
|
| 712 |
-
RCB: 0.7740758340259304
|
| 713 |
-
|
| 714 |
-
Epoch 17, Training is over, training epoch loss = 0.34514665603637695, lr: 5e-05. Epoch training time: 3546.3713114261627 seconds
|
| 715 |
-
###############################################################
|
| 716 |
-
Epoch 18, training step 0/1855, 0.283, lr: 5e-05
|
| 717 |
-
Epoch 18, training step 500/1855, 0.333, lr: 5e-05
|
| 718 |
-
Epoch 18, training step 1000/1855, 0.323, lr: 5e-05
|
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