MK-runner commited on
Commit
ad4f676
·
verified ·
1 Parent(s): 40ec1d0

Delete checkpoints/chexpert-plus/report generation/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20-best/log_2026_02_19_20.log

Browse files
checkpoints/chexpert-plus/report generation/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20-best/log_2026_02_19_20.log DELETED
@@ -1,718 +0,0 @@
1
- task: train-language-model
2
- phase: finetune
3
- data_name: chexpert-plus
4
- ann_path: /home/server/kang_liu/dataset/CheXpert-Plus/chexpert-plus-annotation-previous-image.json
5
- view_position_path: /home/server/kang_liu/MIMIC-CXR/view-positions-dict.json
6
- images_dir: /home/server/kang_liu/dataset/CheXpert-Plus/PNG
7
- english_report: True
8
- max_length: 100
9
- encoder_max_length: 300
10
- num_workers: 10
11
- epochs: 50
12
- batch_size: 32
13
- num_gpus: 1
14
- patience: 5
15
- save_best_model: True
16
- online_checkpoint: False
17
- ckpt_zoo_dir: /home/server/kang_liu/checkpoints
18
- text_encoder_num_blocks: 6
19
- temporal_fusion_num_blocks: 3
20
- perceiver_num_blocks: 3
21
- num_heads: 8
22
- num_latents: 128
23
- lr: 5e-05
24
- monitor_metric: RCB
25
- hidden_size: 768
26
- resume: None
27
- load: /home/server/kang_liu/PriorRG-v2/script/results/mimic_cxr/train-language-model/v1207-gpt2_2025_12_07_15/checkpoint/epoch=14-step=56295_temp.ckpt
28
- test_ckpt_path: None
29
- version: v1231-gpt2-load-mimic-rg-new-lr-patience5
30
- chexbert_path: /home/server/kang_liu/checkpoints/chexbert.pth
31
- bert_path: /home/server/kang_liu/checkpoints/google-bert/bert-base-uncased
32
- radgraph_path: /home/server/kang_liu/checkpoints/radgraph
33
- cxr_bert_path: /home/server/kang_liu/checkpoints/microsoft/BiomedVLP-CXR-BERT-specialized
34
- rad_dino_path: /home/server/kang_liu/checkpoints/microsoft/rad-dino
35
- medsiglip_path: /home/server/kang_liu/checkpoints/google/medsiglip-448
36
- llama_path: /home/server/kang_liu/checkpoints/meta-llama/Llama-3.2-3B-Instruct
37
- distilgpt2_path: /home/server/kang_liu/checkpoints/distilbert/distilgpt2
38
- seed: 9233
39
- num_beams: 10
40
- save_period: 1
41
- exp_dir_trial: results/chexpert-plus/train-language-model/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20
42
- print_step: 500
43
- prior_knowledge_type: prior-image
44
- prior_knowledge_ratio: 1
45
- device: cuda
46
- monitor_mode: max
47
- checkpoint_dir: results/chexpert-plus/train-language-model/finetune-v1231-gpt2-load-mimic-rg-new-lr-patience5-2026_02_19_20/checkpoint
48
- time: 2026_02_19_20
49
-
50
- No. of training & validation examples: 59367 & 74.
51
- Epoch 0, validation step 0/3
52
- The best model is saved on epoch 0!
53
- ###############################################################
54
- Epoch 0, Validation is over, current metrics:
55
- best validation epoch: 0, best val_metrics: RCB = 0.7128899192849105
56
- F1-Radgraph-partial: 0.16773394889465398
57
- F1-Radgraph-simple: 0.195410790298365
58
- F1-Radgraph-complete: 0.11974284925237204
59
- chexbert_5_micro_f1: 0.47058823529411764
60
- chexbert_5_macro_f1: 0.44688642674123613
61
- chexbert_all_micro_p: 0.591304347826087
62
- chexbert_all_micro_r: 0.40476190476190477
63
- chexbert_all_micro_f1: 0.48056537102473496
64
- chexbert_all_macro_p: 0.3918007762545578
65
- chexbert_all_macro_r: 0.3066650250697324
66
- chexbert_all_macro_f1: 0.3085027926873921
67
- chexbert_accuracy: 0.296875
68
- chen_bleu_1: 0.31230658442289705
69
- chen_bleu_2: 0.1715793117816511
70
- chen_bleu_3: 0.1039014558476197
71
- chen_bleu_4: 0.06459059936552158
72
- chen_meteor: 0.12491228400522707
73
- chen_rouge: 0.216659458199761
74
- chen_num_examples: 55
75
- RB: 0.23232454826017557
76
- RC: 0.6482993199193889
77
- RCB: 0.7128899192849105
78
-
79
- Epoch 0, training step 0/1855, 6.356, lr: 5e-05
80
- Epoch 0, training step 500/1855, 2.213, lr: 5e-05
81
- Epoch 0, training step 1000/1855, 1.929, lr: 5e-05
82
- Epoch 0, training step 1500/1855, 1.7, lr: 5e-05
83
- Epoch 0, training step 1854/1855, 1.851, lr: 5e-05
84
- Epoch 0, validation step 0/3
85
- Epoch 0, validation step 2/3
86
- The best model is saved on epoch 0!
87
- ###############################################################
88
- Epoch 0, Validation is over, current metrics:
89
- best validation epoch: 0, best val_metrics: RCB = 0.7581469642157972
90
- F1-Radgraph-partial: 0.2054309579005303
91
- F1-Radgraph-simple: 0.22580553030912281
92
- F1-Radgraph-complete: 0.15449605590579343
93
- chexbert_5_micro_f1: 0.3624161073825503
94
- chexbert_5_macro_f1: 0.2929185709371468
95
- chexbert_all_micro_p: 0.4934210526315789
96
- chexbert_all_micro_r: 0.4166666666666667
97
- chexbert_all_micro_f1: 0.45180722891566266
98
- chexbert_all_macro_p: 0.3059278440857388
99
- chexbert_all_macro_r: 0.29423477524981284
100
- chexbert_all_macro_f1: 0.28042238839740674
101
- chexbert_accuracy: 0.24324324324324326
102
- chen_bleu_1: 0.33518523086873153
103
- chen_bleu_2: 0.20813963673881455
104
- chen_bleu_3: 0.14227959672792104
105
- chen_bleu_4: 0.10090877739960431
106
- chen_meteor: 0.138550494374325
107
- chen_rouge: 0.24058342958834694
108
- chen_num_examples: 62
109
- RB: 0.3063397353001346
110
- RC: 0.657238186816193
111
- RCB: 0.7581469642157972
112
-
113
- Epoch 0, Training is over, training epoch loss = 2.1213018894195557, lr: 5e-05. Epoch training time: 3411.0294868946075 seconds
114
- ###############################################################
115
- Epoch 1, training step 0/1855, 1.841, lr: 5e-05
116
- Epoch 1, training step 500/1855, 1.678, lr: 5e-05
117
- Epoch 1, training step 1000/1855, 1.451, lr: 5e-05
118
- Epoch 1, training step 1500/1855, 1.654, lr: 5e-05
119
- Epoch 1, training step 1854/1855, 1.659, lr: 5e-05
120
- Epoch 1, validation step 0/3
121
- Epoch 1, validation step 2/3
122
- The best model is saved on epoch 1!
123
- ###############################################################
124
- Epoch 1, Validation is over, current metrics:
125
- best validation epoch: 1, best val_metrics: RCB = 0.7788732702417003
126
- F1-Radgraph-partial: 0.22222291034779193
127
- F1-Radgraph-simple: 0.24409066849359246
128
- F1-Radgraph-complete: 0.16146498670148637
129
- chexbert_5_micro_f1: 0.3356643356643357
130
- chexbert_5_macro_f1: 0.26119047619047614
131
- chexbert_all_micro_p: 0.4691358024691358
132
- chexbert_all_micro_r: 0.4222222222222222
133
- chexbert_all_micro_f1: 0.4444444444444444
134
- chexbert_all_macro_p: 0.30525269579635544
135
- chexbert_all_macro_r: 0.29563877225531365
136
- chexbert_all_macro_f1: 0.2848051650730222
137
- chexbert_accuracy: 0.25675675675675674
138
- chen_bleu_1: 0.3396723156224136
139
- chen_bleu_2: 0.21620845938340802
140
- chen_bleu_3: 0.1519208657945907
141
- chen_bleu_4: 0.11220591544946396
142
- chen_meteor: 0.14666781287194652
143
- chen_rouge: 0.2688448435334641
144
- chen_num_examples: 62
145
- RB: 0.33442882579725586
146
- RC: 0.6666673547922364
147
- RCB: 0.7788732702417003
148
-
149
- Epoch 1, Training is over, training epoch loss = 1.632585048675537, lr: 5e-05. Epoch training time: 3272.9845497608185 seconds
150
- ###############################################################
151
- Epoch 2, training step 0/1855, 1.49, lr: 5e-05
152
- Epoch 2, training step 500/1855, 1.478, lr: 5e-05
153
- Epoch 2, training step 1000/1855, 1.441, lr: 5e-05
154
- Epoch 2, training step 1500/1855, 1.486, lr: 5e-05
155
- Epoch 2, training step 1854/1855, 1.546, lr: 5e-05
156
- Epoch 2, validation step 0/3
157
- Epoch 2, validation step 2/3
158
- The best model is saved on epoch 2!
159
- ###############################################################
160
- Epoch 2, Validation is over, current metrics:
161
- best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
162
- F1-Radgraph-partial: 0.22296392930797204
163
- F1-Radgraph-simple: 0.2442942276488967
164
- F1-Radgraph-complete: 0.1702995502821575
165
- chexbert_5_micro_f1: 0.4383561643835616
166
- chexbert_5_macro_f1: 0.36282724947686584
167
- chexbert_all_micro_p: 0.525
168
- chexbert_all_micro_r: 0.4666666666666667
169
- chexbert_all_micro_f1: 0.49411764705882355
170
- chexbert_all_macro_p: 0.34258893280632413
171
- chexbert_all_macro_r: 0.31049018650522414
172
- chexbert_all_macro_f1: 0.30954162956355136
173
- chexbert_accuracy: 0.3108108108108108
174
- chen_bleu_1: 0.34954910573236325
175
- chen_bleu_2: 0.22866069714001924
176
- chen_bleu_3: 0.16358887079618845
177
- chen_bleu_4: 0.12261481323423262
178
- chen_meteor: 0.15030966114946268
179
- chen_rouge: 0.2736999076715437
180
- chen_num_examples: 62
181
- RB: 0.34557874254220466
182
- RC: 0.7170815763667956
183
- RCB: 0.8396963896010282
184
-
185
- Epoch 2, Training is over, training epoch loss = 1.4905798435211182, lr: 5e-05. Epoch training time: 3278.290989637375 seconds
186
- ###############################################################
187
- Epoch 3, training step 0/1855, 1.334, lr: 5e-05
188
- Epoch 3, training step 500/1855, 1.43, lr: 5e-05
189
- Epoch 3, training step 1000/1855, 1.391, lr: 5e-05
190
- Epoch 3, training step 1500/1855, 1.415, lr: 5e-05
191
- Epoch 3, training step 1854/1855, 1.339, lr: 5e-05
192
- Epoch 3, validation step 0/3
193
- Epoch 3, validation step 2/3
194
- ###############################################################
195
- Epoch 3, Validation is over, current metrics:
196
- best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
197
- F1-Radgraph-partial: 0.22944968456745854
198
- F1-Radgraph-simple: 0.250578446482917
199
- F1-Radgraph-complete: 0.16737010117674994
200
- chexbert_5_micro_f1: 0.36
201
- chexbert_5_macro_f1: 0.3104300851580692
202
- chexbert_all_micro_p: 0.4785276073619632
203
- chexbert_all_micro_r: 0.43333333333333335
204
- chexbert_all_micro_f1: 0.45481049562682213
205
- chexbert_all_macro_p: 0.3411169518312375
206
- chexbert_all_macro_r: 0.33256968178020807
207
- chexbert_all_macro_f1: 0.312538067970267
208
- chexbert_accuracy: 0.2972972972972973
209
- chen_bleu_1: 0.366955215733812
210
- chen_bleu_2: 0.24056494090065836
211
- chen_bleu_3: 0.17166744789627206
212
- chen_bleu_4: 0.1273661835505716
213
- chen_meteor: 0.15847455872775007
214
- chen_rouge: 0.2718180280620476
215
- chen_num_examples: 62
216
- RB: 0.3568158681180301
217
- RC: 0.6842601801942807
218
- RCB: 0.8116263637448522
219
-
220
- Epoch 3, Training is over, training epoch loss = 1.3825280666351318, lr: 5e-05. Epoch training time: 3431.1623187065125 seconds
221
- ###############################################################
222
- Epoch 4, training step 0/1855, 1.316, lr: 5e-05
223
- Epoch 4, training step 500/1855, 1.173, lr: 5e-05
224
- Epoch 4, training step 1000/1855, 1.254, lr: 5e-05
225
- Epoch 4, training step 1500/1855, 1.568, lr: 5e-05
226
- Epoch 4, training step 1854/1855, 1.265, lr: 5e-05
227
- Epoch 4, validation step 0/3
228
- Epoch 4, validation step 2/3
229
- ###############################################################
230
- Epoch 4, Validation is over, current metrics:
231
- best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
232
- F1-Radgraph-partial: 0.22571158110052036
233
- F1-Radgraph-simple: 0.2428537039169649
234
- F1-Radgraph-complete: 0.1708963462658373
235
- chexbert_5_micro_f1: 0.40816326530612246
236
- chexbert_5_macro_f1: 0.3642238713667285
237
- chexbert_all_micro_p: 0.49079754601226994
238
- chexbert_all_micro_r: 0.4444444444444444
239
- chexbert_all_micro_f1: 0.46647230320699706
240
- chexbert_all_macro_p: 0.3213445681302825
241
- chexbert_all_macro_r: 0.3084252839891938
242
- chexbert_all_macro_f1: 0.29984543039626493
243
- chexbert_accuracy: 0.2972972972972973
244
- chen_bleu_1: 0.35054308423207614
245
- chen_bleu_2: 0.2276837717277895
246
- chen_bleu_3: 0.16244291046065298
247
- chen_bleu_4: 0.12382016436943244
248
- chen_meteor: 0.15011542268010536
249
- chen_rouge: 0.2688574375927487
250
- chen_num_examples: 62
251
- RB: 0.3495317454699528
252
- RC: 0.6921838843075174
253
- RCB: 0.8160040486769499
254
-
255
- Epoch 4, Training is over, training epoch loss = 1.2729856967926025, lr: 5e-05. Epoch training time: 3313.8814165592194 seconds
256
- ###############################################################
257
- Epoch 5, training step 0/1855, 1.068, lr: 5e-05
258
- Epoch 5, training step 500/1855, 1.295, lr: 5e-05
259
- Epoch 5, training step 1000/1855, 1.153, lr: 5e-05
260
- Epoch 5, training step 1500/1855, 1.106, lr: 5e-05
261
- Epoch 5, training step 1854/1855, 1.166, lr: 5e-05
262
- Epoch 5, validation step 0/3
263
- Epoch 5, validation step 2/3
264
- ###############################################################
265
- Epoch 5, Validation is over, current metrics:
266
- best validation epoch: 2, best val_metrics: RCB = 0.8396963896010282
267
- F1-Radgraph-partial: 0.2104520181119516
268
- F1-Radgraph-simple: 0.23583850351928914
269
- F1-Radgraph-complete: 0.16197533557860835
270
- chexbert_5_micro_f1: 0.4025974025974026
271
- chexbert_5_macro_f1: 0.3745169082125604
272
- chexbert_all_micro_p: 0.5151515151515151
273
- chexbert_all_micro_r: 0.4722222222222222
274
- chexbert_all_micro_f1: 0.4927536231884058
275
- chexbert_all_macro_p: 0.37518949584723976
276
- chexbert_all_macro_r: 0.30578177044342464
277
- chexbert_all_macro_f1: 0.3185596609509653
278
- chexbert_accuracy: 0.25675675675675674
279
- chen_bleu_1: 0.348775169262384
280
- chen_bleu_2: 0.22759996928856854
281
- chen_bleu_3: 0.16008565100408526
282
- chen_bleu_4: 0.11783655790035427
283
- chen_meteor: 0.1556787550671602
284
- chen_rouge: 0.2626379098597724
285
- chen_num_examples: 62
286
- RB: 0.3282885760123059
287
- RC: 0.7032056413003575
288
- RCB: 0.8210421992007118
289
-
290
- Epoch 5, Training is over, training epoch loss = 1.1555395126342773, lr: 5e-05. Epoch training time: 3336.533994913101 seconds
291
- ###############################################################
292
- Epoch 6, training step 0/1855, 1.211, lr: 5e-05
293
- Epoch 6, training step 500/1855, 1.021, lr: 5e-05
294
- Epoch 6, training step 1000/1855, 1.122, lr: 5e-05
295
- Epoch 6, training step 1500/1855, 0.966, lr: 5e-05
296
- Epoch 6, training step 1854/1855, 0.972, lr: 5e-05
297
- Epoch 6, validation step 0/3
298
- Epoch 6, validation step 2/3
299
- The best model is saved on epoch 6!
300
- ###############################################################
301
- Epoch 6, Validation is over, current metrics:
302
- best validation epoch: 6, best val_metrics: RCB = 0.8454387528294205
303
- F1-Radgraph-partial: 0.21377494003215572
304
- F1-Radgraph-simple: 0.23321029232454
305
- F1-Radgraph-complete: 0.1618291767596106
306
- chexbert_5_micro_f1: 0.43312101910828027
307
- chexbert_5_macro_f1: 0.3985867074102368
308
- chexbert_all_micro_p: 0.5141242937853108
309
- chexbert_all_micro_r: 0.5055555555555555
310
- chexbert_all_micro_f1: 0.5098039215686274
311
- chexbert_all_macro_p: 0.3394181279549943
312
- chexbert_all_macro_r: 0.3291657173236121
313
- chexbert_all_macro_f1: 0.32207675057696417
314
- chexbert_accuracy: 0.28378378378378377
315
- chen_bleu_1: 0.351007708408334
316
- chen_bleu_2: 0.23260142904459505
317
- chen_bleu_3: 0.16488975891178295
318
- chen_bleu_4: 0.12185989122863732
319
- chen_meteor: 0.1556922512226225
320
- chen_rouge: 0.2690694086877414
321
- chen_num_examples: 62
322
- RB: 0.335634831260793
323
- RC: 0.7235788616007831
324
- RCB: 0.8454387528294205
325
-
326
- Epoch 6, Training is over, training epoch loss = 1.0451730489730835, lr: 5e-05. Epoch training time: 3565.302356004715 seconds
327
- ###############################################################
328
- Epoch 7, training step 0/1855, 0.937, lr: 5e-05
329
- Epoch 7, training step 500/1855, 0.984, lr: 5e-05
330
- Epoch 7, training step 1000/1855, 0.946, lr: 5e-05
331
- Epoch 7, training step 1500/1855, 1.003, lr: 5e-05
332
- Epoch 7, training step 1854/1855, 0.954, lr: 5e-05
333
- Epoch 7, validation step 0/3
334
- Epoch 7, validation step 2/3
335
- The best model is saved on epoch 7!
336
- ###############################################################
337
- Epoch 7, Validation is over, current metrics:
338
- best validation epoch: 7, best val_metrics: RCB = 0.8633592256171855
339
- F1-Radgraph-partial: 0.20452139989293763
340
- F1-Radgraph-simple: 0.2225077461545921
341
- F1-Radgraph-complete: 0.15282023981687623
342
- chexbert_5_micro_f1: 0.46060606060606063
343
- chexbert_5_macro_f1: 0.43863187722572033
344
- chexbert_all_micro_p: 0.518324607329843
345
- chexbert_all_micro_r: 0.55
346
- chexbert_all_micro_f1: 0.5336927223719676
347
- chexbert_all_macro_p: 0.36302998996847924
348
- chexbert_all_macro_r: 0.39041299135284097
349
- chexbert_all_macro_f1: 0.362561033487406
350
- chexbert_accuracy: 0.2972972972972973
351
- chen_bleu_1: 0.3660310705182532
352
- chen_bleu_2: 0.23923196199594268
353
- chen_bleu_3: 0.16965656704017723
354
- chen_bleu_4: 0.1251451033522802
355
- chen_meteor: 0.15896443100790422
356
- chen_rouge: 0.2745260003662961
357
- chen_num_examples: 62
358
- RB: 0.32966650324521785
359
- RC: 0.7382141222649052
360
- RCB: 0.8633592256171855
361
-
362
- Epoch 7, Training is over, training epoch loss = 0.9423288702964783, lr: 5e-05. Epoch training time: 3317.7727003097534 seconds
363
- ###############################################################
364
- Epoch 8, training step 0/1855, 0.904, lr: 5e-05
365
- Epoch 8, training step 500/1855, 0.773, lr: 5e-05
366
- Epoch 8, training step 1000/1855, 1.004, lr: 5e-05
367
- Epoch 8, training step 1500/1855, 0.951, lr: 5e-05
368
- Epoch 8, training step 1854/1855, 0.859, lr: 5e-05
369
- Epoch 8, validation step 0/3
370
- Epoch 8, validation step 2/3
371
- ###############################################################
372
- Epoch 8, Validation is over, current metrics:
373
- best validation epoch: 7, best val_metrics: RCB = 0.8633592256171855
374
- F1-Radgraph-partial: 0.2095601755353686
375
- F1-Radgraph-simple: 0.23786859077395142
376
- F1-Radgraph-complete: 0.15973690788597364
377
- chexbert_5_micro_f1: 0.4276729559748428
378
- chexbert_5_macro_f1: 0.3902937642068077
379
- chexbert_all_micro_p: 0.5251396648044693
380
- chexbert_all_micro_r: 0.5222222222222223
381
- chexbert_all_micro_f1: 0.5236768802228412
382
- chexbert_all_macro_p: 0.4142318510982106
383
- chexbert_all_macro_r: 0.3639725938222179
384
- chexbert_all_macro_f1: 0.36840241974138727
385
- chexbert_accuracy: 0.28378378378378377
386
- chen_bleu_1: 0.3446166507338335
387
- chen_bleu_2: 0.2211358837799951
388
- chen_bleu_3: 0.15569240627806558
389
- chen_bleu_4: 0.11316636258764776
390
- chen_meteor: 0.1536064844415331
391
- chen_rouge: 0.2641348602085754
392
- chen_num_examples: 62
393
- RB: 0.3227265381230163
394
- RC: 0.7332370557582097
395
- RCB: 0.8464034183458575
396
-
397
- Epoch 8, Training is over, training epoch loss = 0.8553245067596436, lr: 5e-05. Epoch training time: 3165.634534597397 seconds
398
- ###############################################################
399
- Epoch 9, training step 0/1855, 0.86, lr: 5e-05
400
- Epoch 9, training step 500/1855, 0.744, lr: 5e-05
401
- Epoch 9, training step 1000/1855, 0.934, lr: 5e-05
402
- Epoch 9, training step 1500/1855, 0.823, lr: 5e-05
403
- Epoch 9, training step 1854/1855, 0.722, lr: 5e-05
404
- Epoch 9, validation step 0/3
405
- Epoch 9, validation step 2/3
406
- The best model is saved on epoch 9!
407
- ###############################################################
408
- Epoch 9, Validation is over, current metrics:
409
- best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
410
- F1-Radgraph-partial: 0.19972788342299275
411
- F1-Radgraph-simple: 0.23219854869722778
412
- F1-Radgraph-complete: 0.152644218918469
413
- chexbert_5_micro_f1: 0.4888888888888889
414
- chexbert_5_macro_f1: 0.46671447030495444
415
- chexbert_all_micro_p: 0.5380710659898477
416
- chexbert_all_micro_r: 0.5888888888888889
417
- chexbert_all_micro_f1: 0.5623342175066313
418
- chexbert_all_macro_p: 0.4014816373190757
419
- chexbert_all_macro_r: 0.4218285432195206
420
- chexbert_all_macro_f1: 0.4011878473251877
421
- chexbert_accuracy: 0.2702702702702703
422
- chen_bleu_1: 0.354796183588271
423
- chen_bleu_2: 0.22913221248992194
424
- chen_bleu_3: 0.16177322277471629
425
- chen_bleu_4: 0.11763788657622337
426
- chen_meteor: 0.1551498980852446
427
- chen_rouge: 0.26971463386849304
428
- chen_num_examples: 62
429
- RB: 0.3173657699992161
430
- RC: 0.762062100929624
431
- RCB: 0.8796999875058473
432
-
433
- Epoch 9, Training is over, training epoch loss = 0.7797667980194092, lr: 5e-05. Epoch training time: 3303.1085772514343 seconds
434
- ###############################################################
435
- Epoch 10, training step 0/1855, 0.765, lr: 5e-05
436
- Epoch 10, training step 500/1855, 0.641, lr: 5e-05
437
- Epoch 10, training step 1000/1855, 0.684, lr: 5e-05
438
- Epoch 10, training step 1500/1855, 0.795, lr: 5e-05
439
- Epoch 10, training step 1854/1855, 0.836, lr: 5e-05
440
- Epoch 10, validation step 0/3
441
- Epoch 10, validation step 2/3
442
- ###############################################################
443
- Epoch 10, Validation is over, current metrics:
444
- best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
445
- F1-Radgraph-partial: 0.1992894482296047
446
- F1-Radgraph-simple: 0.22519366622545012
447
- F1-Radgraph-complete: 0.14662290945656212
448
- chexbert_5_micro_f1: 0.4161849710982659
449
- chexbert_5_macro_f1: 0.3804093567251462
450
- chexbert_all_micro_p: 0.4717948717948718
451
- chexbert_all_micro_r: 0.5111111111111111
452
- chexbert_all_micro_f1: 0.49066666666666664
453
- chexbert_all_macro_p: 0.32401906275330644
454
- chexbert_all_macro_r: 0.34128074515292567
455
- chexbert_all_macro_f1: 0.32003761693611316
456
- chexbert_accuracy: 0.20270270270270271
457
- chen_bleu_1: 0.35126010727716905
458
- chen_bleu_2: 0.22330124084144842
459
- chen_bleu_3: 0.15632463281573358
460
- chen_bleu_4: 0.1142193367543019
461
- chen_meteor: 0.15430710584101837
462
- chen_rouge: 0.2537626840525148
463
- chen_num_examples: 62
464
- RB: 0.3135087849839066
465
- RC: 0.6899561148962714
466
- RCB: 0.8041754516505732
467
-
468
- Epoch 10, Training is over, training epoch loss = 0.7102962136268616, lr: 5e-05. Epoch training time: 3169.5202717781067 seconds
469
- ###############################################################
470
- Epoch 11, training step 0/1855, 0.729, lr: 5e-05
471
- Epoch 11, training step 500/1855, 0.568, lr: 5e-05
472
- Epoch 11, training step 1000/1855, 0.713, lr: 5e-05
473
- Epoch 11, training step 1500/1855, 0.644, lr: 5e-05
474
- Epoch 11, training step 1854/1855, 0.653, lr: 5e-05
475
- Epoch 11, validation step 0/3
476
- Epoch 11, validation step 2/3
477
- ###############################################################
478
- Epoch 11, Validation is over, current metrics:
479
- best validation epoch: 9, best val_metrics: RCB = 0.8796999875058473
480
- F1-Radgraph-partial: 0.21475044799880041
481
- F1-Radgraph-simple: 0.2364068314955351
482
- F1-Radgraph-complete: 0.1621375710198932
483
- chexbert_5_micro_f1: 0.44047619047619047
484
- chexbert_5_macro_f1: 0.43222111222111226
485
- chexbert_all_micro_p: 0.4972972972972973
486
- chexbert_all_micro_r: 0.5111111111111111
487
- chexbert_all_micro_f1: 0.5041095890410959
488
- chexbert_all_macro_p: 0.3322562358276645
489
- chexbert_all_macro_r: 0.3310574596664822
490
- chexbert_all_macro_f1: 0.32393524395404094
491
- chexbert_accuracy: 0.28378378378378377
492
- chen_bleu_1: 0.3567271295314524
493
- chen_bleu_2: 0.23296514394745924
494
- chen_bleu_3: 0.16453050794947513
495
- chen_bleu_4: 0.121202788764822
496
- chen_meteor: 0.15688277135102827
497
- chen_rouge: 0.2690422702986062
498
- chen_num_examples: 62
499
- RB: 0.33595323676362243
500
- RC: 0.7188600370398963
501
- RCB: 0.8400628258047184
502
-
503
- Epoch 11, Training is over, training epoch loss = 0.6462647914886475, lr: 5e-05. Epoch training time: 3382.2880659103394 seconds
504
- ###############################################################
505
- Epoch 12, training step 0/1855, 0.571, lr: 5e-05
506
- Epoch 12, training step 500/1855, 0.454, lr: 5e-05
507
- Epoch 12, training step 1000/1855, 0.573, lr: 5e-05
508
- Epoch 12, training step 1500/1855, 0.683, lr: 5e-05
509
- Epoch 12, training step 1854/1855, 0.59, lr: 5e-05
510
- Epoch 12, validation step 0/3
511
- Epoch 12, validation step 2/3
512
- The best model is saved on epoch 12!
513
- ###############################################################
514
- Epoch 12, Validation is over, current metrics:
515
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
516
- F1-Radgraph-partial: 0.21346428762310224
517
- F1-Radgraph-simple: 0.2374007763791543
518
- F1-Radgraph-complete: 0.16172873674084237
519
- chexbert_5_micro_f1: 0.5384615384615384
520
- chexbert_5_macro_f1: 0.5265643648763854
521
- chexbert_all_micro_p: 0.5868263473053892
522
- chexbert_all_micro_r: 0.5444444444444444
523
- chexbert_all_micro_f1: 0.5648414985590778
524
- chexbert_all_macro_p: 0.4335233860443944
525
- chexbert_all_macro_r: 0.4097051611713266
526
- chexbert_all_macro_f1: 0.411902970631918
527
- chexbert_accuracy: 0.32432432432432434
528
- chen_bleu_1: 0.34976570841803306
529
- chen_bleu_2: 0.2203744448483044
530
- chen_bleu_3: 0.15471346102479588
531
- chen_bleu_4: 0.11218559808059807
532
- chen_meteor: 0.14848611892190736
533
- chen_rouge: 0.26404931819454563
534
- chen_num_examples: 62
535
- RB: 0.3256498857037003
536
- RC: 0.77830578618218
537
- RCB: 0.8904913842627782
538
-
539
- Epoch 12, Training is over, training epoch loss = 0.58570396900177, lr: 5e-05. Epoch training time: 3258.8526549339294 seconds
540
- ###############################################################
541
- Epoch 13, training step 0/1855, 0.343, lr: 5e-05
542
- Epoch 13, training step 500/1855, 0.565, lr: 5e-05
543
- Epoch 13, training step 1000/1855, 0.55, lr: 5e-05
544
- Epoch 13, training step 1500/1855, 0.49, lr: 5e-05
545
- Epoch 13, training step 1854/1855, 0.581, lr: 5e-05
546
- Epoch 13, validation step 0/3
547
- Epoch 13, validation step 2/3
548
- ###############################################################
549
- Epoch 13, Validation is over, current metrics:
550
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
551
- F1-Radgraph-partial: 0.22166534962809928
552
- F1-Radgraph-simple: 0.24854847264707447
553
- F1-Radgraph-complete: 0.17090046632299813
554
- chexbert_5_micro_f1: 0.43312101910828027
555
- chexbert_5_macro_f1: 0.4127351908461353
556
- chexbert_all_micro_p: 0.5089820359281437
557
- chexbert_all_micro_r: 0.4722222222222222
558
- chexbert_all_micro_f1: 0.4899135446685879
559
- chexbert_all_macro_p: 0.33600460386174674
560
- chexbert_all_macro_r: 0.30813901637209906
561
- chexbert_all_macro_f1: 0.3088396094481447
562
- chexbert_accuracy: 0.20270270270270271
563
- chen_bleu_1: 0.3533298794495646
564
- chen_bleu_2: 0.2280113596958507
565
- chen_bleu_3: 0.16303476434759134
566
- chen_bleu_4: 0.11990811636716939
567
- chen_meteor: 0.15642998552986945
568
- chen_rouge: 0.2692314678017771
569
- chen_num_examples: 62
570
- RB: 0.34157346599526867
571
- RC: 0.7115788942966872
572
- RCB: 0.8314870106638566
573
-
574
- Epoch 13, Training is over, training epoch loss = 0.5284979939460754, lr: 5e-05. Epoch training time: 3251.961864709854 seconds
575
- ###############################################################
576
- Epoch 14, training step 0/1855, 0.446, lr: 5e-05
577
- Epoch 14, training step 500/1855, 0.475, lr: 5e-05
578
- Epoch 14, training step 1000/1855, 0.426, lr: 5e-05
579
- Epoch 14, training step 1500/1855, 0.546, lr: 5e-05
580
- Epoch 14, training step 1854/1855, 0.512, lr: 5e-05
581
- Epoch 14, validation step 0/3
582
- Epoch 14, validation step 2/3
583
- ###############################################################
584
- Epoch 14, Validation is over, current metrics:
585
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
586
- F1-Radgraph-partial: 0.20269397917153106
587
- F1-Radgraph-simple: 0.22783225810271748
588
- F1-Radgraph-complete: 0.14776831330955664
589
- chexbert_5_micro_f1: 0.4585987261146497
590
- chexbert_5_macro_f1: 0.4558594006164339
591
- chexbert_all_micro_p: 0.5151515151515151
592
- chexbert_all_micro_r: 0.4722222222222222
593
- chexbert_all_micro_f1: 0.4927536231884058
594
- chexbert_all_macro_p: 0.39138136414673835
595
- chexbert_all_macro_r: 0.3223175362649047
596
- chexbert_all_macro_f1: 0.34305695252989243
597
- chexbert_accuracy: 0.36486486486486486
598
- chen_bleu_1: 0.3532023096465505
599
- chen_bleu_2: 0.22729672383113422
600
- chen_bleu_3: 0.1605252335513812
601
- chen_bleu_4: 0.11766215044534757
602
- chen_meteor: 0.15275664310351603
603
- chen_rouge: 0.2697377782778773
604
- chen_num_examples: 62
605
- RB: 0.32035612961687865
606
- RC: 0.6954476023599369
607
- RCB: 0.8131097528052844
608
-
609
- Epoch 14, Training is over, training epoch loss = 0.47589635848999023, lr: 5e-05. Epoch training time: 3524.114292860031 seconds
610
- ###############################################################
611
- Epoch 15, training step 0/1855, 0.388, lr: 5e-05
612
- Epoch 15, training step 500/1855, 0.38, lr: 5e-05
613
- Epoch 15, training step 1000/1855, 0.548, lr: 5e-05
614
- Epoch 15, training step 1500/1855, 0.406, lr: 5e-05
615
- Epoch 15, training step 1854/1855, 0.521, lr: 5e-05
616
- Epoch 15, validation step 0/3
617
- Epoch 15, validation step 2/3
618
- ###############################################################
619
- Epoch 15, Validation is over, current metrics:
620
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
621
- F1-Radgraph-partial: 0.20006528397694634
622
- F1-Radgraph-simple: 0.22319933977464823
623
- F1-Radgraph-complete: 0.1399975799819895
624
- chexbert_5_micro_f1: 0.5061728395061729
625
- chexbert_5_macro_f1: 0.4589031910404815
626
- chexbert_all_micro_p: 0.5657142857142857
627
- chexbert_all_micro_r: 0.55
628
- chexbert_all_micro_f1: 0.5577464788732395
629
- chexbert_all_macro_p: 0.41968119155619155
630
- chexbert_all_macro_r: 0.3984954811270601
631
- chexbert_all_macro_f1: 0.3991504070565822
632
- chexbert_accuracy: 0.35135135135135137
633
- chen_bleu_1: 0.32904273021927166
634
- chen_bleu_2: 0.20596314513558867
635
- chen_bleu_3: 0.1425729504051587
636
- chen_bleu_4: 0.1031871891594472
637
- chen_meteor: 0.14752424331917288
638
- chen_rouge: 0.25716151594150544
639
- chen_num_examples: 62
640
- RB: 0.30325247313639353
641
- RC: 0.7578117628501858
642
- RCB: 0.8609989520096331
643
-
644
- Epoch 15, Training is over, training epoch loss = 0.4276135265827179, lr: 5e-05. Epoch training time: 3805.063766479492 seconds
645
- ###############################################################
646
- Epoch 16, training step 0/1855, 0.478, lr: 5e-05
647
- Epoch 16, training step 500/1855, 0.386, lr: 5e-05
648
- Epoch 16, training step 1000/1855, 0.415, lr: 5e-05
649
- Epoch 16, training step 1500/1855, 0.279, lr: 5e-05
650
- Epoch 16, training step 1854/1855, 0.455, lr: 5e-05
651
- Epoch 16, validation step 0/3
652
- Epoch 16, validation step 2/3
653
- ###############################################################
654
- Epoch 16, Validation is over, current metrics:
655
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
656
- F1-Radgraph-partial: 0.19500457787528733
657
- F1-Radgraph-simple: 0.22367288609052008
658
- F1-Radgraph-complete: 0.14385065291721189
659
- chexbert_5_micro_f1: 0.4157303370786517
660
- chexbert_5_macro_f1: 0.4061367331222726
661
- chexbert_all_micro_p: 0.46875
662
- chexbert_all_micro_r: 0.5
663
- chexbert_all_micro_f1: 0.4838709677419355
664
- chexbert_all_macro_p: 0.30834223907532177
665
- chexbert_all_macro_r: 0.3300599984810511
666
- chexbert_all_macro_f1: 0.31018189528041745
667
- chexbert_accuracy: 0.22972972972972974
668
- chen_bleu_1: 0.3459906355606208
669
- chen_bleu_2: 0.2196180823678822
670
- chen_bleu_3: 0.1521887431354563
671
- chen_bleu_4: 0.10987164409445438
672
- chen_meteor: 0.1495198277824665
673
- chen_rouge: 0.25902060035850816
674
- chen_num_examples: 62
675
- RB: 0.30487622196974173
676
- RC: 0.6788755456172229
677
- RCB: 0.7887471897116772
678
-
679
- Epoch 16, Training is over, training epoch loss = 0.38339459896087646, lr: 5e-05. Epoch training time: 3775.7138345241547 seconds
680
- ###############################################################
681
- Epoch 17, training step 0/1855, 0.365, lr: 5e-05
682
- Epoch 17, training step 500/1855, 0.319, lr: 5e-05
683
- Epoch 17, training step 1000/1855, 0.321, lr: 5e-05
684
- Epoch 17, training step 1500/1855, 0.334, lr: 5e-05
685
- Epoch 17, training step 1854/1855, 0.33, lr: 5e-05
686
- Epoch 17, validation step 0/3
687
- Epoch 17, validation step 2/3
688
- ###############################################################
689
- Epoch 17, Validation is over, current metrics:
690
- best validation epoch: 12, best val_metrics: RCB = 0.8904913842627782
691
- F1-Radgraph-partial: 0.1825730540526958
692
- F1-Radgraph-simple: 0.2008214815642524
693
- F1-Radgraph-complete: 0.1249465253922876
694
- chexbert_5_micro_f1: 0.4024390243902439
695
- chexbert_5_macro_f1: 0.37110771581359814
696
- chexbert_all_micro_p: 0.49707602339181284
697
- chexbert_all_micro_r: 0.4722222222222222
698
- chexbert_all_micro_f1: 0.4843304843304843
699
- chexbert_all_macro_p: 0.3515516890516891
700
- chexbert_all_macro_r: 0.32245847302238284
701
- chexbert_all_macro_f1: 0.33082034217465656
702
- chexbert_accuracy: 0.25675675675675674
703
- chen_bleu_1: 0.3395538894554275
704
- chen_bleu_2: 0.21285520719549617
705
- chen_bleu_3: 0.14764517273851474
706
- chen_bleu_4: 0.10717229564275034
707
- chen_meteor: 0.14400912008824707
708
- chen_rouge: 0.25011718923236953
709
- chen_num_examples: 62
710
- RB: 0.28974534969544613
711
- RC: 0.6669035383831801
712
- RCB: 0.7740758340259304
713
-
714
- Epoch 17, Training is over, training epoch loss = 0.34514665603637695, lr: 5e-05. Epoch training time: 3546.3713114261627 seconds
715
- ###############################################################
716
- Epoch 18, training step 0/1855, 0.283, lr: 5e-05
717
- Epoch 18, training step 500/1855, 0.333, lr: 5e-05
718
- Epoch 18, training step 1000/1855, 0.323, lr: 5e-05