| { |
| "test_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, is_segmentation=True, data_list_key='validation', base_dir=@dataset_dir)", |
| "validate#dataset": { |
| "_target_": "Dataset", |
| "data": "$@test_datalist", |
| "transform": "@validate#preprocessing" |
| }, |
| "validate#key_metric": { |
| "val_coco": { |
| "_target_": "scripts.cocometric_ignite.IgniteCocoMetric", |
| "coco_metric_monai": "$monai.apps.detection.metrics.coco.COCOMetric(classes=['nodule'], iou_list=[0.1], max_detection=[100])", |
| "output_transform": "$monai.handlers.from_engine(['pred', 'label'])", |
| "box_key": "box", |
| "label_key": "label", |
| "pred_score_key": "label_scores", |
| "reduce_scalar": false |
| } |
| }, |
| "validate#handlers": [ |
| { |
| "_target_": "CheckpointLoader", |
| "load_path": "$@ckpt_dir + '/model.pt'", |
| "load_dict": { |
| "model": "@network" |
| } |
| }, |
| { |
| "_target_": "StatsHandler", |
| "iteration_log": false |
| }, |
| { |
| "_target_": "MetricsSaver", |
| "save_dir": "@output_dir", |
| "metrics": [ |
| "val_coco" |
| ], |
| "metric_details": [ |
| "val_coco" |
| ], |
| "batch_transform": "$lambda x: [xx['image'].meta for xx in x]", |
| "summary_ops": "*" |
| } |
| ], |
| "initialize": [ |
| "$setattr(torch.backends.cudnn, 'benchmark', True)" |
| ], |
| "run": [ |
| "$@validate#evaluator.run()" |
| ] |
| } |
|
|
