Add ONNX graphs: ACDC.onnx, ACDC.onnx.config.json, ACDC.onnx.provenance.json, BUSI.onnx, BUSI.onnx.config.json, BUSI.onnx.provenance.json, COVIDQUEx.onnx, COVIDQUEx.onnx.config.json, COVIDQUEx.onnx.provenance.json, DRIVE.onnx, DRIVE.onnx.config.json, DRIVE.onnx.provenance.json, ISIC2018.onnx, ISIC2018.onnx.config.json, ISIC2018.onnx.provenance.json, PROMISE12.onnx, PROMISE12.onnx.config.json, PROMISE12.onnx.provenance.json, UWaterlooSkinCancer.onnx, UWaterlooSkinCancer.onnx.config.json, UWaterlooSkinCancer.onnx.provenance.json (tools/hf_onnx_export.py)
Browse files- ACDC.onnx +3 -0
- ACDC.onnx.config.json +16 -0
- ACDC.onnx.provenance.json +158 -0
- BUSI.onnx +3 -0
- BUSI.onnx.config.json +30 -0
- BUSI.onnx.provenance.json +158 -0
- COVIDQUEx.onnx +3 -0
- COVIDQUEx.onnx.config.json +30 -0
- COVIDQUEx.onnx.provenance.json +158 -0
- DRIVE.onnx +3 -0
- DRIVE.onnx.config.json +30 -0
- DRIVE.onnx.provenance.json +158 -0
- ISIC2018.onnx +3 -0
- ISIC2018.onnx.config.json +30 -0
- ISIC2018.onnx.provenance.json +158 -0
- PROMISE12.onnx +3 -0
- PROMISE12.onnx.config.json +30 -0
- PROMISE12.onnx.provenance.json +158 -0
- UWaterlooSkinCancer.onnx +3 -0
- UWaterlooSkinCancer.onnx.config.json +30 -0
- UWaterlooSkinCancer.onnx.provenance.json +158 -0
ACDC.onnx
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version https://git-lfs.github.com/spec/v1
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oid sha256:4f210e192335738e7f8b2c8b364c803aaeddce3796e5f6c08ad32f7638a436da
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size 102054805
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ACDC.onnx.config.json
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{
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"schema": "medotter/model-sidecar/v1",
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"model": {
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"graph": "onnx",
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"args": {
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"input_channel": 3,
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"num_classes": 4
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}
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},
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"inference": {
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"size": [
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256,
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256
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]
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}
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}
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ACDC.onnx.provenance.json
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{
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"schema": "medotter/graph-provenance/v1",
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"source": {
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"file": "ACDC.pth",
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"sha256": "684d44784b44ec22725afeba7f7327df680beb641d8514320076036c89c55f1d",
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"reference": "ACDC.pth",
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"model": "Polyp_PVT",
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"declaration_source": "sidecar",
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"declaration": [
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{
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"file": "ACDC.pth.config.json",
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"sha256": "d84f326f8c218efce48af9f521f9453542ef3bbe2947128cf97f278ceb8d3ffb"
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}
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],
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"float32_vs_float64": {
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"shape": [
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1,
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3,
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256,
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256
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],
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"torch": "ok",
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"float64": "ok",
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"threads": 6,
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"max_abs_diff": 6.093113638971914e-06,
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"scale": 7.637602672271395,
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| 27 |
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"rel_diff": 7.977782951570908e-07
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| 28 |
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}
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| 29 |
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},
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| 30 |
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"graph": {
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| 31 |
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"kind": "onnx",
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| 32 |
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"file": "ACDC.onnx",
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| 33 |
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"sha256": "4f210e192335738e7f8b2c8b364c803aaeddce3796e5f6c08ad32f7638a436da",
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"bytes": 102054805,
|
| 35 |
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"opset": 20,
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| 36 |
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"dynamic": false,
|
| 37 |
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"reason": "dynamic_export_error",
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"input": "image",
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"output": "logits",
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"input_channel": 3,
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"num_classes": 4,
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"size": [
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256,
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256
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]
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},
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"exporter": {
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"api": "torch.onnx.export",
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"name": "dynamo",
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| 50 |
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"dynamo": true,
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| 51 |
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"registered_symbolics": {},
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| 52 |
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"producer": "pytorch 2.13.0+cpu",
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| 53 |
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"torch": "2.13.0+cpu",
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| 54 |
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"onnx": "1.22.0",
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| 55 |
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"onnxruntime": "1.29.0"
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| 56 |
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},
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| 57 |
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"verification_input": {
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| 58 |
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"kind": "smooth_random_field",
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"distribution": "normal",
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| 60 |
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"coarse_factor": 16,
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| 61 |
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"min_coarse": 4,
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"interpolation": "bilinear",
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| 63 |
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"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
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},
|
| 66 |
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"attempts": [
|
| 67 |
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{
|
| 68 |
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"mode": "dynamic",
|
| 69 |
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"exporter": "torchscript",
|
| 70 |
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"outcome": "fell_back",
|
| 71 |
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"reason": "dynamic_export_error",
|
| 72 |
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"error": {
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| 73 |
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"kind": "export",
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"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
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},
|
| 76 |
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"verification": null
|
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},
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| 78 |
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{
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"mode": "static",
|
| 80 |
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"exporter": "dynamo",
|
| 81 |
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"outcome": "kept",
|
| 82 |
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"reason": "dynamic_export_error",
|
| 83 |
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"error": null,
|
| 84 |
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"verification": [
|
| 85 |
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{
|
| 86 |
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"shape": [
|
| 87 |
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1,
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| 88 |
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3,
|
| 89 |
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256,
|
| 90 |
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256
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
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"graph": "ok",
|
| 94 |
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"max_abs_diff": 8.344650268554688e-06,
|
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"scale": 7.637600421905518,
|
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"rel_diff": 1.0925748674441347e-06
|
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}
|
| 98 |
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]
|
| 99 |
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}
|
| 100 |
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],
|
| 101 |
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"verification": [
|
| 102 |
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{
|
| 103 |
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"shape": [
|
| 104 |
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1,
|
| 105 |
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3,
|
| 106 |
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256,
|
| 107 |
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256
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| 108 |
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],
|
| 109 |
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"torch": "ok",
|
| 110 |
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"graph": "ok",
|
| 111 |
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"max_abs_diff": 8.344650268554688e-06,
|
| 112 |
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"scale": 7.637600421905518,
|
| 113 |
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"rel_diff": 1.0925748674441347e-06
|
| 114 |
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}
|
| 115 |
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],
|
| 116 |
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"exported_at": "2026-09-07T16:17:20+00:00",
|
| 117 |
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"release": {
|
| 118 |
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"repo": "MedOtter/Polyp_PVT",
|
| 119 |
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
| 120 |
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"pth_file": "ACDC.pth",
|
| 121 |
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"pth_sha256": "684d44784b44ec22725afeba7f7327df680beb641d8514320076036c89c55f1d",
|
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"sidecar_sha256": "9867fc324419b3f483f4f5b56708a3271f503d4c68bf7fdb4c768189884baefb",
|
| 123 |
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"sidecar_source": "existing",
|
| 124 |
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"group": "checkout_only",
|
| 125 |
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"reference_check": {
|
| 126 |
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"dataset": "ACDC",
|
| 127 |
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"split": "test",
|
| 128 |
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"samples": 4,
|
| 129 |
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"reproducible": true,
|
| 130 |
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"status": "pass",
|
| 131 |
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"sizes": [
|
| 132 |
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{
|
| 133 |
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"size": [
|
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256,
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| 135 |
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256
|
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],
|
| 137 |
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"predict_masks_equal": 4,
|
| 138 |
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"pixels": 262144,
|
| 139 |
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"disagreeing_pixels": 0,
|
| 140 |
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"unexplained_pixels": 0,
|
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"max_abs_diff": 1.1801719665527344e-05,
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"scale": 7.146183490753174,
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"rel_diff": 1.651471681464409e-06,
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"float32_vs_float64": {
|
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"max_abs_diff": 1.246956475275951e-05,
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"scale": 7.146182123979647,
|
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"rel_diff": 1.7449268065694523e-06,
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"samples": 4,
|
| 149 |
+
"of": 4,
|
| 150 |
+
"complete": true
|
| 151 |
+
}
|
| 152 |
+
}
|
| 153 |
+
]
|
| 154 |
+
},
|
| 155 |
+
"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:17:46+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
BUSI.onnx
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:dcae9bd5be2a24898ba7f8f327b6fad10bb2e5d92527785fe10f3128f13d8384
|
| 3 |
+
size 102054409
|
BUSI.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
+
"normalize": {
|
| 12 |
+
"mean": [
|
| 13 |
+
0.485,
|
| 14 |
+
0.456,
|
| 15 |
+
0.406
|
| 16 |
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|
| 17 |
+
"std": [
|
| 18 |
+
58.395,
|
| 19 |
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|
| 20 |
+
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|
| 21 |
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|
| 22 |
+
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|
| 23 |
+
"scale": 255.0,
|
| 24 |
+
"size": [
|
| 25 |
+
256,
|
| 26 |
+
256
|
| 27 |
+
],
|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
BUSI.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "medotter/graph-provenance/v1",
|
| 3 |
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"source": {
|
| 4 |
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"file": "BUSI.pth",
|
| 5 |
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"sha256": "17169d2717106f982c117dc4505905fdec73509907494deb443e4193f25ddb46",
|
| 6 |
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"reference": "BUSI.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
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{
|
| 11 |
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"file": "BUSI.pth.config.json",
|
| 12 |
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"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
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}
|
| 14 |
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|
| 15 |
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"float32_vs_float64": {
|
| 16 |
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"shape": [
|
| 17 |
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|
| 18 |
+
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|
| 19 |
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|
| 20 |
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|
| 21 |
+
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|
| 22 |
+
"torch": "ok",
|
| 23 |
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"float64": "ok",
|
| 24 |
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"threads": 6,
|
| 25 |
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"max_abs_diff": 3.393785491567769e-05,
|
| 26 |
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"scale": 31.56708641520828,
|
| 27 |
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"rel_diff": 1.0751025441273298e-06
|
| 28 |
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}
|
| 29 |
+
},
|
| 30 |
+
"graph": {
|
| 31 |
+
"kind": "onnx",
|
| 32 |
+
"file": "BUSI.onnx",
|
| 33 |
+
"sha256": "dcae9bd5be2a24898ba7f8f327b6fad10bb2e5d92527785fe10f3128f13d8384",
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| 34 |
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
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"dynamic": false,
|
| 37 |
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"reason": "dynamic_export_error",
|
| 38 |
+
"input": "image",
|
| 39 |
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"output": "logits",
|
| 40 |
+
"input_channel": 3,
|
| 41 |
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"num_classes": 1,
|
| 42 |
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"size": [
|
| 43 |
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256,
|
| 44 |
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|
| 45 |
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]
|
| 46 |
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},
|
| 47 |
+
"exporter": {
|
| 48 |
+
"api": "torch.onnx.export",
|
| 49 |
+
"name": "dynamo",
|
| 50 |
+
"dynamo": true,
|
| 51 |
+
"registered_symbolics": {},
|
| 52 |
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"producer": "pytorch 2.13.0+cpu",
|
| 53 |
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"torch": "2.13.0+cpu",
|
| 54 |
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"onnx": "1.22.0",
|
| 55 |
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"onnxruntime": "1.29.0"
|
| 56 |
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},
|
| 57 |
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"verification_input": {
|
| 58 |
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"kind": "smooth_random_field",
|
| 59 |
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"distribution": "normal",
|
| 60 |
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"coarse_factor": 16,
|
| 61 |
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"min_coarse": 4,
|
| 62 |
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"interpolation": "bilinear",
|
| 63 |
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"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
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},
|
| 66 |
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"attempts": [
|
| 67 |
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{
|
| 68 |
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"mode": "dynamic",
|
| 69 |
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"exporter": "torchscript",
|
| 70 |
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"outcome": "fell_back",
|
| 71 |
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"reason": "dynamic_export_error",
|
| 72 |
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"error": {
|
| 73 |
+
"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
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},
|
| 76 |
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"verification": null
|
| 77 |
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},
|
| 78 |
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{
|
| 79 |
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"mode": "static",
|
| 80 |
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"exporter": "dynamo",
|
| 81 |
+
"outcome": "kept",
|
| 82 |
+
"reason": "dynamic_export_error",
|
| 83 |
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"error": null,
|
| 84 |
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"verification": [
|
| 85 |
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{
|
| 86 |
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"shape": [
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| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
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"graph": "ok",
|
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"max_abs_diff": 2.288818359375e-05,
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"scale": 31.567110061645508,
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|
| 105 |
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"torch": "ok",
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}
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],
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"exported_at": "2026-09-07T16:17:19+00:00",
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"release": {
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"repo": "MedOtter/Polyp_PVT",
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
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"pth_file": "BUSI.pth",
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"pth_sha256": "17169d2717106f982c117dc4505905fdec73509907494deb443e4193f25ddb46",
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"sidecar_sha256": "402e4863796b2530120ab02b07d1cb1732e28237a9d98398dec1bbc4a73d5594",
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"sidecar_source": "existing",
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"group": "checkout_only",
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"reference_check": {
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"dataset": "BUSI",
|
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"split": "train",
|
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"samples": 4,
|
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"reproducible": true,
|
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"status": "pass",
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|
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"pixels": 262144,
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|
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"complete": true
|
| 151 |
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}
|
| 152 |
+
}
|
| 153 |
+
]
|
| 154 |
+
},
|
| 155 |
+
"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:17:42+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
COVIDQUEx.onnx
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ddfc925e54932af822c149119d7af74523293708b482755a94371ac7425f0bbf
|
| 3 |
+
size 102054409
|
COVIDQUEx.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
+
"normalize": {
|
| 12 |
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"mean": [
|
| 13 |
+
0.485,
|
| 14 |
+
0.456,
|
| 15 |
+
0.406
|
| 16 |
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|
| 17 |
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"std": [
|
| 18 |
+
58.395,
|
| 19 |
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|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
+
"scale": 255.0,
|
| 24 |
+
"size": [
|
| 25 |
+
256,
|
| 26 |
+
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|
| 27 |
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|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
COVIDQUEx.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "medotter/graph-provenance/v1",
|
| 3 |
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"source": {
|
| 4 |
+
"file": "COVIDQUEx.pth",
|
| 5 |
+
"sha256": "ea65937eb06d500ffc3457dd30ccefb03260bdab04e1a45b62b9046c0caac822",
|
| 6 |
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"reference": "COVIDQUEx.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
+
{
|
| 11 |
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"file": "COVIDQUEx.pth.config.json",
|
| 12 |
+
"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
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}
|
| 14 |
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],
|
| 15 |
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"float32_vs_float64": {
|
| 16 |
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"shape": [
|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
+
],
|
| 22 |
+
"torch": "ok",
|
| 23 |
+
"float64": "ok",
|
| 24 |
+
"threads": 6,
|
| 25 |
+
"max_abs_diff": 1.0420266374211451e-05,
|
| 26 |
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"scale": 12.977233374638399,
|
| 27 |
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"rel_diff": 8.02965167797316e-07
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"graph": {
|
| 31 |
+
"kind": "onnx",
|
| 32 |
+
"file": "COVIDQUEx.onnx",
|
| 33 |
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"sha256": "ddfc925e54932af822c149119d7af74523293708b482755a94371ac7425f0bbf",
|
| 34 |
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
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"dynamic": false,
|
| 37 |
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"reason": "dynamic_export_error",
|
| 38 |
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"input": "image",
|
| 39 |
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"output": "logits",
|
| 40 |
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"input_channel": 3,
|
| 41 |
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"num_classes": 1,
|
| 42 |
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"size": [
|
| 43 |
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256,
|
| 44 |
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|
| 45 |
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]
|
| 46 |
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},
|
| 47 |
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"exporter": {
|
| 48 |
+
"api": "torch.onnx.export",
|
| 49 |
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"name": "dynamo",
|
| 50 |
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"dynamo": true,
|
| 51 |
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"registered_symbolics": {},
|
| 52 |
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"producer": "pytorch 2.13.0+cpu",
|
| 53 |
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"torch": "2.13.0+cpu",
|
| 54 |
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"onnx": "1.22.0",
|
| 55 |
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"onnxruntime": "1.29.0"
|
| 56 |
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},
|
| 57 |
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"verification_input": {
|
| 58 |
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"kind": "smooth_random_field",
|
| 59 |
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"distribution": "normal",
|
| 60 |
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"coarse_factor": 16,
|
| 61 |
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"min_coarse": 4,
|
| 62 |
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"interpolation": "bilinear",
|
| 63 |
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"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
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},
|
| 66 |
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"attempts": [
|
| 67 |
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{
|
| 68 |
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"mode": "dynamic",
|
| 69 |
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"exporter": "torchscript",
|
| 70 |
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"outcome": "fell_back",
|
| 71 |
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"reason": "dynamic_export_error",
|
| 72 |
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"error": {
|
| 73 |
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"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
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},
|
| 76 |
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"verification": null
|
| 77 |
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},
|
| 78 |
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{
|
| 79 |
+
"mode": "static",
|
| 80 |
+
"exporter": "dynamo",
|
| 81 |
+
"outcome": "kept",
|
| 82 |
+
"reason": "dynamic_export_error",
|
| 83 |
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"error": null,
|
| 84 |
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"verification": [
|
| 85 |
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{
|
| 86 |
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"shape": [
|
| 87 |
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1,
|
| 88 |
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|
| 89 |
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|
| 90 |
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256
|
| 91 |
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
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"graph": "ok",
|
| 94 |
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"max_abs_diff": 1.239776611328125e-05,
|
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"scale": 12.977235794067383,
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"rel_diff": 9.553472180068548e-07
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|
| 103 |
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"shape": [
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|
| 105 |
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|
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}
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"exported_at": "2026-09-07T16:17:22+00:00",
|
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"release": {
|
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"repo": "MedOtter/Polyp_PVT",
|
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
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"pth_file": "COVIDQUEx.pth",
|
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"pth_sha256": "ea65937eb06d500ffc3457dd30ccefb03260bdab04e1a45b62b9046c0caac822",
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|
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"dataset": "COVIDQUEx",
|
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"split": "val",
|
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"samples": 4,
|
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"reproducible": true,
|
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"status": "pass",
|
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|
| 133 |
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|
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|
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|
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"pixels": 262144,
|
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|
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|
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|
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}
|
| 153 |
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|
| 154 |
+
},
|
| 155 |
+
"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:17:52+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
DRIVE.onnx
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9ade93d1eaefaffcb0f679871379c432f9ddb11eeafc0c1370590b7d49f7e2fe
|
| 3 |
+
size 102054409
|
DRIVE.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
+
"normalize": {
|
| 12 |
+
"mean": [
|
| 13 |
+
0.485,
|
| 14 |
+
0.456,
|
| 15 |
+
0.406
|
| 16 |
+
],
|
| 17 |
+
"std": [
|
| 18 |
+
58.395,
|
| 19 |
+
57.12,
|
| 20 |
+
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|
| 21 |
+
]
|
| 22 |
+
},
|
| 23 |
+
"scale": 255.0,
|
| 24 |
+
"size": [
|
| 25 |
+
256,
|
| 26 |
+
256
|
| 27 |
+
],
|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
DRIVE.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "medotter/graph-provenance/v1",
|
| 3 |
+
"source": {
|
| 4 |
+
"file": "DRIVE.pth",
|
| 5 |
+
"sha256": "00f7e971b1f8e1b901165cf95c7e8ddda5b85fcc5f805260dfbc999eb563ea7e",
|
| 6 |
+
"reference": "DRIVE.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
+
{
|
| 11 |
+
"file": "DRIVE.pth.config.json",
|
| 12 |
+
"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
+
}
|
| 14 |
+
],
|
| 15 |
+
"float32_vs_float64": {
|
| 16 |
+
"shape": [
|
| 17 |
+
1,
|
| 18 |
+
3,
|
| 19 |
+
256,
|
| 20 |
+
256
|
| 21 |
+
],
|
| 22 |
+
"torch": "ok",
|
| 23 |
+
"float64": "ok",
|
| 24 |
+
"threads": 6,
|
| 25 |
+
"max_abs_diff": 2.5759674585401626e-05,
|
| 26 |
+
"scale": 9.97913584963656,
|
| 27 |
+
"rel_diff": 2.5813532327390648e-06
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"graph": {
|
| 31 |
+
"kind": "onnx",
|
| 32 |
+
"file": "DRIVE.onnx",
|
| 33 |
+
"sha256": "9ade93d1eaefaffcb0f679871379c432f9ddb11eeafc0c1370590b7d49f7e2fe",
|
| 34 |
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
+
"dynamic": false,
|
| 37 |
+
"reason": "dynamic_export_error",
|
| 38 |
+
"input": "image",
|
| 39 |
+
"output": "logits",
|
| 40 |
+
"input_channel": 3,
|
| 41 |
+
"num_classes": 1,
|
| 42 |
+
"size": [
|
| 43 |
+
256,
|
| 44 |
+
256
|
| 45 |
+
]
|
| 46 |
+
},
|
| 47 |
+
"exporter": {
|
| 48 |
+
"api": "torch.onnx.export",
|
| 49 |
+
"name": "dynamo",
|
| 50 |
+
"dynamo": true,
|
| 51 |
+
"registered_symbolics": {},
|
| 52 |
+
"producer": "pytorch 2.13.0+cpu",
|
| 53 |
+
"torch": "2.13.0+cpu",
|
| 54 |
+
"onnx": "1.22.0",
|
| 55 |
+
"onnxruntime": "1.29.0"
|
| 56 |
+
},
|
| 57 |
+
"verification_input": {
|
| 58 |
+
"kind": "smooth_random_field",
|
| 59 |
+
"distribution": "normal",
|
| 60 |
+
"coarse_factor": 16,
|
| 61 |
+
"min_coarse": 4,
|
| 62 |
+
"interpolation": "bilinear",
|
| 63 |
+
"align_corners": false,
|
| 64 |
+
"seed": 0
|
| 65 |
+
},
|
| 66 |
+
"attempts": [
|
| 67 |
+
{
|
| 68 |
+
"mode": "dynamic",
|
| 69 |
+
"exporter": "torchscript",
|
| 70 |
+
"outcome": "fell_back",
|
| 71 |
+
"reason": "dynamic_export_error",
|
| 72 |
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"error": {
|
| 73 |
+
"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
+
},
|
| 76 |
+
"verification": null
|
| 77 |
+
},
|
| 78 |
+
{
|
| 79 |
+
"mode": "static",
|
| 80 |
+
"exporter": "dynamo",
|
| 81 |
+
"outcome": "kept",
|
| 82 |
+
"reason": "dynamic_export_error",
|
| 83 |
+
"error": null,
|
| 84 |
+
"verification": [
|
| 85 |
+
{
|
| 86 |
+
"shape": [
|
| 87 |
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1,
|
| 88 |
+
3,
|
| 89 |
+
256,
|
| 90 |
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256
|
| 91 |
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
+
"graph": "ok",
|
| 94 |
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"max_abs_diff": 3.528594970703125e-05,
|
| 95 |
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"scale": 9.979158401489258,
|
| 96 |
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"rel_diff": 3.535964485919503e-06
|
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}
|
| 98 |
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| 99 |
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}
|
| 100 |
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],
|
| 101 |
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"verification": [
|
| 102 |
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{
|
| 103 |
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"shape": [
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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],
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| 109 |
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"torch": "ok",
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| 110 |
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"graph": "ok",
|
| 111 |
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"max_abs_diff": 3.528594970703125e-05,
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"rel_diff": 3.535964485919503e-06
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}
|
| 115 |
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],
|
| 116 |
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"exported_at": "2026-09-07T16:17:39+00:00",
|
| 117 |
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"release": {
|
| 118 |
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"repo": "MedOtter/Polyp_PVT",
|
| 119 |
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
| 120 |
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"pth_file": "DRIVE.pth",
|
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"pth_sha256": "00f7e971b1f8e1b901165cf95c7e8ddda5b85fcc5f805260dfbc999eb563ea7e",
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"sidecar_sha256": "402e4863796b2530120ab02b07d1cb1732e28237a9d98398dec1bbc4a73d5594",
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"sidecar_source": "existing",
|
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"group": "checkout_only",
|
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"reference_check": {
|
| 126 |
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"dataset": "DRIVE",
|
| 127 |
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"split": "val",
|
| 128 |
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"samples": 4,
|
| 129 |
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"reproducible": true,
|
| 130 |
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"status": "pass",
|
| 131 |
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"sizes": [
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| 132 |
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{
|
| 133 |
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"size": [
|
| 134 |
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|
| 135 |
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|
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|
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"predict_masks_equal": 4,
|
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"pixels": 262144,
|
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"samples": 4,
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"of": 4,
|
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"complete": true
|
| 151 |
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}
|
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}
|
| 153 |
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|
| 154 |
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|
| 155 |
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"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:18:00+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
ISIC2018.onnx
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a3b2ed0e73f658f8696a492c030a2fba8ad4be7e7467f33a526ec1547152d9eb
|
| 3 |
+
size 102054409
|
ISIC2018.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
+
"normalize": {
|
| 12 |
+
"mean": [
|
| 13 |
+
0.485,
|
| 14 |
+
0.456,
|
| 15 |
+
0.406
|
| 16 |
+
],
|
| 17 |
+
"std": [
|
| 18 |
+
58.395,
|
| 19 |
+
57.12,
|
| 20 |
+
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|
| 21 |
+
]
|
| 22 |
+
},
|
| 23 |
+
"scale": 255.0,
|
| 24 |
+
"size": [
|
| 25 |
+
256,
|
| 26 |
+
256
|
| 27 |
+
],
|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
ISIC2018.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "medotter/graph-provenance/v1",
|
| 3 |
+
"source": {
|
| 4 |
+
"file": "ISIC2018.pth",
|
| 5 |
+
"sha256": "d0cd7b455d7142d4310754a28f3f8c69e767ea4307f08f6991b1505d2598f29f",
|
| 6 |
+
"reference": "ISIC2018.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
+
{
|
| 11 |
+
"file": "ISIC2018.pth.config.json",
|
| 12 |
+
"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
+
}
|
| 14 |
+
],
|
| 15 |
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"float32_vs_float64": {
|
| 16 |
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"shape": [
|
| 17 |
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1,
|
| 18 |
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3,
|
| 19 |
+
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|
| 20 |
+
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|
| 21 |
+
],
|
| 22 |
+
"torch": "ok",
|
| 23 |
+
"float64": "ok",
|
| 24 |
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"threads": 6,
|
| 25 |
+
"max_abs_diff": 2.504311162354611e-05,
|
| 26 |
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"scale": 31.31202241618219,
|
| 27 |
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"rel_diff": 7.997922105026253e-07
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"graph": {
|
| 31 |
+
"kind": "onnx",
|
| 32 |
+
"file": "ISIC2018.onnx",
|
| 33 |
+
"sha256": "a3b2ed0e73f658f8696a492c030a2fba8ad4be7e7467f33a526ec1547152d9eb",
|
| 34 |
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
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"dynamic": false,
|
| 37 |
+
"reason": "dynamic_export_error",
|
| 38 |
+
"input": "image",
|
| 39 |
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"output": "logits",
|
| 40 |
+
"input_channel": 3,
|
| 41 |
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"num_classes": 1,
|
| 42 |
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"size": [
|
| 43 |
+
256,
|
| 44 |
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256
|
| 45 |
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]
|
| 46 |
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},
|
| 47 |
+
"exporter": {
|
| 48 |
+
"api": "torch.onnx.export",
|
| 49 |
+
"name": "dynamo",
|
| 50 |
+
"dynamo": true,
|
| 51 |
+
"registered_symbolics": {},
|
| 52 |
+
"producer": "pytorch 2.13.0+cpu",
|
| 53 |
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"torch": "2.13.0+cpu",
|
| 54 |
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"onnx": "1.22.0",
|
| 55 |
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"onnxruntime": "1.29.0"
|
| 56 |
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},
|
| 57 |
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"verification_input": {
|
| 58 |
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"kind": "smooth_random_field",
|
| 59 |
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"distribution": "normal",
|
| 60 |
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"coarse_factor": 16,
|
| 61 |
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"min_coarse": 4,
|
| 62 |
+
"interpolation": "bilinear",
|
| 63 |
+
"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
+
},
|
| 66 |
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"attempts": [
|
| 67 |
+
{
|
| 68 |
+
"mode": "dynamic",
|
| 69 |
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"exporter": "torchscript",
|
| 70 |
+
"outcome": "fell_back",
|
| 71 |
+
"reason": "dynamic_export_error",
|
| 72 |
+
"error": {
|
| 73 |
+
"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
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},
|
| 76 |
+
"verification": null
|
| 77 |
+
},
|
| 78 |
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{
|
| 79 |
+
"mode": "static",
|
| 80 |
+
"exporter": "dynamo",
|
| 81 |
+
"outcome": "kept",
|
| 82 |
+
"reason": "dynamic_export_error",
|
| 83 |
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"error": null,
|
| 84 |
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"verification": [
|
| 85 |
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{
|
| 86 |
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"shape": [
|
| 87 |
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1,
|
| 88 |
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3,
|
| 89 |
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|
| 90 |
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256
|
| 91 |
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
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"graph": "ok",
|
| 94 |
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"max_abs_diff": 2.86102294921875e-05,
|
| 95 |
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"scale": 31.31204605102539,
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"rel_diff": 9.13713190302701e-07
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}
|
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|
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],
|
| 101 |
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"verification": [
|
| 102 |
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{
|
| 103 |
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"shape": [
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| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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],
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"torch": "ok",
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|
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}
|
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],
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"exported_at": "2026-09-07T16:18:11+00:00",
|
| 117 |
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"release": {
|
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"repo": "MedOtter/Polyp_PVT",
|
| 119 |
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
| 120 |
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"pth_file": "ISIC2018.pth",
|
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"pth_sha256": "d0cd7b455d7142d4310754a28f3f8c69e767ea4307f08f6991b1505d2598f29f",
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"sidecar_sha256": "402e4863796b2530120ab02b07d1cb1732e28237a9d98398dec1bbc4a73d5594",
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"sidecar_source": "existing",
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"group": "checkout_only",
|
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"reference_check": {
|
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"dataset": "ISIC2018",
|
| 127 |
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"split": "val",
|
| 128 |
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"samples": 4,
|
| 129 |
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"reproducible": true,
|
| 130 |
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"status": "pass",
|
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"sizes": [
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{
|
| 133 |
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"size": [
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|
| 135 |
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|
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|
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"pixels": 262144,
|
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"of": 4,
|
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"complete": true
|
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}
|
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}
|
| 153 |
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|
| 154 |
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},
|
| 155 |
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"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:18:29+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
PROMISE12.onnx
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ec0efad356dd971960f0e3441d27429a4f0cdf28d11caf21ca74019188550d6d
|
| 3 |
+
size 102054409
|
PROMISE12.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
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"normalize": {
|
| 12 |
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"mean": [
|
| 13 |
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0.485,
|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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"std": [
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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"scale": 255.0,
|
| 24 |
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"size": [
|
| 25 |
+
256,
|
| 26 |
+
256
|
| 27 |
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],
|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
PROMISE12.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
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{
|
| 2 |
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"schema": "medotter/graph-provenance/v1",
|
| 3 |
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"source": {
|
| 4 |
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"file": "PROMISE12.pth",
|
| 5 |
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"sha256": "cdc037d1d2bf2269d0b4f4940d3bfa395d2b3214805824cd02089b74cd59f7fb",
|
| 6 |
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"reference": "PROMISE12.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
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{
|
| 11 |
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"file": "PROMISE12.pth.config.json",
|
| 12 |
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"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
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|
| 14 |
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|
| 15 |
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"float32_vs_float64": {
|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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"torch": "ok",
|
| 23 |
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|
| 24 |
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"threads": 6,
|
| 25 |
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"max_abs_diff": 1.7743337107134494e-05,
|
| 26 |
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"scale": 23.43940945770895,
|
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"rel_diff": 7.569873779946668e-07
|
| 28 |
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}
|
| 29 |
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},
|
| 30 |
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"graph": {
|
| 31 |
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"kind": "onnx",
|
| 32 |
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"file": "PROMISE12.onnx",
|
| 33 |
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"sha256": "ec0efad356dd971960f0e3441d27429a4f0cdf28d11caf21ca74019188550d6d",
|
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
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"dynamic": false,
|
| 37 |
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"reason": "dynamic_export_error",
|
| 38 |
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"input": "image",
|
| 39 |
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"output": "logits",
|
| 40 |
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"input_channel": 3,
|
| 41 |
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"num_classes": 1,
|
| 42 |
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"size": [
|
| 43 |
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256,
|
| 44 |
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|
| 45 |
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]
|
| 46 |
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},
|
| 47 |
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"exporter": {
|
| 48 |
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"api": "torch.onnx.export",
|
| 49 |
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"name": "dynamo",
|
| 50 |
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"dynamo": true,
|
| 51 |
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"registered_symbolics": {},
|
| 52 |
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"producer": "pytorch 2.13.0+cpu",
|
| 53 |
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"torch": "2.13.0+cpu",
|
| 54 |
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"onnx": "1.22.0",
|
| 55 |
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"onnxruntime": "1.29.0"
|
| 56 |
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},
|
| 57 |
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"verification_input": {
|
| 58 |
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"kind": "smooth_random_field",
|
| 59 |
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"distribution": "normal",
|
| 60 |
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"coarse_factor": 16,
|
| 61 |
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"min_coarse": 4,
|
| 62 |
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"interpolation": "bilinear",
|
| 63 |
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"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
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},
|
| 66 |
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"attempts": [
|
| 67 |
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{
|
| 68 |
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"mode": "dynamic",
|
| 69 |
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"exporter": "torchscript",
|
| 70 |
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"outcome": "fell_back",
|
| 71 |
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"reason": "dynamic_export_error",
|
| 72 |
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"error": {
|
| 73 |
+
"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
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},
|
| 76 |
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"verification": null
|
| 77 |
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},
|
| 78 |
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{
|
| 79 |
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"mode": "static",
|
| 80 |
+
"exporter": "dynamo",
|
| 81 |
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"outcome": "kept",
|
| 82 |
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"reason": "dynamic_export_error",
|
| 83 |
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"error": null,
|
| 84 |
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"verification": [
|
| 85 |
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{
|
| 86 |
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| 87 |
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|
| 88 |
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|
| 89 |
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|
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|
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],
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"torch": "ok",
|
| 93 |
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"graph": "ok",
|
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|
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|
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| 106 |
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}
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],
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"exported_at": "2026-09-07T16:18:17+00:00",
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|
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"repo": "MedOtter/Polyp_PVT",
|
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
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"pth_file": "PROMISE12.pth",
|
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"dataset": "PROMISE12",
|
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"split": "val",
|
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"samples": 4,
|
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"reproducible": true,
|
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"status": "pass",
|
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|
| 133 |
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|
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|
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|
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|
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|
| 151 |
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|
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|
| 153 |
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|
| 154 |
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|
| 155 |
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"tool": "tools/hf_onnx_export.py",
|
| 156 |
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"stamped_at": "2026-09-07T16:18:35+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|
UWaterlooSkinCancer.onnx
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6ad46799936c6e6bac5cbb117ee39c66fbb07940f9c20ea996ab6085de7bc594
|
| 3 |
+
size 102054409
|
UWaterlooSkinCancer.onnx.config.json
ADDED
|
@@ -0,0 +1,30 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "medotter/model-sidecar/v1",
|
| 3 |
+
"model": {
|
| 4 |
+
"graph": "onnx",
|
| 5 |
+
"args": {
|
| 6 |
+
"input_channel": 3,
|
| 7 |
+
"num_classes": 1
|
| 8 |
+
}
|
| 9 |
+
},
|
| 10 |
+
"inference": {
|
| 11 |
+
"normalize": {
|
| 12 |
+
"mean": [
|
| 13 |
+
0.485,
|
| 14 |
+
0.456,
|
| 15 |
+
0.406
|
| 16 |
+
],
|
| 17 |
+
"std": [
|
| 18 |
+
58.395,
|
| 19 |
+
57.12,
|
| 20 |
+
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|
| 21 |
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]
|
| 22 |
+
},
|
| 23 |
+
"scale": 255.0,
|
| 24 |
+
"size": [
|
| 25 |
+
256,
|
| 26 |
+
256
|
| 27 |
+
],
|
| 28 |
+
"threshold": 0.5
|
| 29 |
+
}
|
| 30 |
+
}
|
UWaterlooSkinCancer.onnx.provenance.json
ADDED
|
@@ -0,0 +1,158 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "medotter/graph-provenance/v1",
|
| 3 |
+
"source": {
|
| 4 |
+
"file": "UWaterlooSkinCancer.pth",
|
| 5 |
+
"sha256": "d18e6591bed7a82dcdb04075f2963012ec86a0a7c209d734867bae789f0d210d",
|
| 6 |
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"reference": "UWaterlooSkinCancer.pth",
|
| 7 |
+
"model": "Polyp_PVT",
|
| 8 |
+
"declaration_source": "sidecar",
|
| 9 |
+
"declaration": [
|
| 10 |
+
{
|
| 11 |
+
"file": "UWaterlooSkinCancer.pth.config.json",
|
| 12 |
+
"sha256": "162ecb66f358cc578e56397f53d61d0d6d340103a0b3162396265b2cfe8734e0"
|
| 13 |
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}
|
| 14 |
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],
|
| 15 |
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"float32_vs_float64": {
|
| 16 |
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"shape": [
|
| 17 |
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|
| 18 |
+
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|
| 19 |
+
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|
| 20 |
+
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|
| 21 |
+
],
|
| 22 |
+
"torch": "ok",
|
| 23 |
+
"float64": "ok",
|
| 24 |
+
"threads": 6,
|
| 25 |
+
"max_abs_diff": 1.863750354580418e-05,
|
| 26 |
+
"scale": 19.494387337891347,
|
| 27 |
+
"rel_diff": 9.560445897973086e-07
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"graph": {
|
| 31 |
+
"kind": "onnx",
|
| 32 |
+
"file": "UWaterlooSkinCancer.onnx",
|
| 33 |
+
"sha256": "6ad46799936c6e6bac5cbb117ee39c66fbb07940f9c20ea996ab6085de7bc594",
|
| 34 |
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"bytes": 102054409,
|
| 35 |
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"opset": 20,
|
| 36 |
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"dynamic": false,
|
| 37 |
+
"reason": "dynamic_export_error",
|
| 38 |
+
"input": "image",
|
| 39 |
+
"output": "logits",
|
| 40 |
+
"input_channel": 3,
|
| 41 |
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"num_classes": 1,
|
| 42 |
+
"size": [
|
| 43 |
+
256,
|
| 44 |
+
256
|
| 45 |
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]
|
| 46 |
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},
|
| 47 |
+
"exporter": {
|
| 48 |
+
"api": "torch.onnx.export",
|
| 49 |
+
"name": "dynamo",
|
| 50 |
+
"dynamo": true,
|
| 51 |
+
"registered_symbolics": {},
|
| 52 |
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"producer": "pytorch 2.13.0+cpu",
|
| 53 |
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"torch": "2.13.0+cpu",
|
| 54 |
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"onnx": "1.22.0",
|
| 55 |
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"onnxruntime": "1.29.0"
|
| 56 |
+
},
|
| 57 |
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"verification_input": {
|
| 58 |
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"kind": "smooth_random_field",
|
| 59 |
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"distribution": "normal",
|
| 60 |
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"coarse_factor": 16,
|
| 61 |
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"min_coarse": 4,
|
| 62 |
+
"interpolation": "bilinear",
|
| 63 |
+
"align_corners": false,
|
| 64 |
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"seed": 0
|
| 65 |
+
},
|
| 66 |
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"attempts": [
|
| 67 |
+
{
|
| 68 |
+
"mode": "dynamic",
|
| 69 |
+
"exporter": "torchscript",
|
| 70 |
+
"outcome": "fell_back",
|
| 71 |
+
"reason": "dynamic_export_error",
|
| 72 |
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"error": {
|
| 73 |
+
"kind": "export",
|
| 74 |
+
"text": "torchscript: SymbolicValueError: Unsupported: ONNX export of operator adaptive_avg_pool2d, input size not accessible. Please feel free to request support or submit a pull request on PyTorch GitHub: https://github.com/pytorch/pytorch/issues [Caused by the value 'input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 )' (type 'Tensor') in the TorchScript graph. The containing node has kind 'onnx::Mul'.] (node defined in /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(98): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py(208): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(726): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1768): _slow_forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(131): wrapper /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(140): forward /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1789): _call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/module.py(1778): _wrapped_call_impl /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/jit/_trace.py(1439): _get_trace_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(898): _trace_and_get_graph_from_model /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(992): _create_jit_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1108): _model_to_graph /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(1510): _export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/_internal/torchscript_exporter/utils.py(547): export /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/onnx/__init__.py(334): export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(774): _export_onnx /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1123): attempt /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1160): cmd_export /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1271): main /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/medotter/agent/tools/export_graph.py(1275): <module> <frozen runpy>(88): _run_code <frozen runpy>(198): _run_module_as_main ) Inputs: #0: 2052 defined in (%2052 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=0, device=cpu) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[1, 1], pads=[0, 0, 0, 0], strides=[1, 1]](%input.699, %inner.SAM.conv_proj.weight, %inner.SAM.conv_proj.bias), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM/torch.nn.modules.conv.Conv2d::conv_proj # /home/csgrad/tianyulu/.venvs/medotter-eval-v2/lib/python3.12/site-packages/torch/nn/modules/conv.py:560:0 ) (type 'Tensor') #1: 2047 defined in (%2047 : Float(*, 1, *, *, strides=[32768, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Unsqueeze(%2045, %2046), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:94:0 ) (type 'Tensor') Outputs: #0: input.715 defined in (%input.715 : Float(*, 16, *, *, strides=[16384, 1024, 32, 1], requires_grad=1, device=cpu) = onnx::Mul(%2052, %2047), scope: __main__.scored_head.<locals>.ScoredHead::/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.PolypPVT::inner/model_zoo.Transformer.Polyp_PVT.Polyp_PVT.SAM::SAM # /home/csgrad/tianyulu/code/medotter/.worktrees/onnx-pilot/model_zoo/Transformer/Polyp_PVT/Polyp_PVT.py:98:0 ) (type 'Tensor')"
|
| 75 |
+
},
|
| 76 |
+
"verification": null
|
| 77 |
+
},
|
| 78 |
+
{
|
| 79 |
+
"mode": "static",
|
| 80 |
+
"exporter": "dynamo",
|
| 81 |
+
"outcome": "kept",
|
| 82 |
+
"reason": "dynamic_export_error",
|
| 83 |
+
"error": null,
|
| 84 |
+
"verification": [
|
| 85 |
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{
|
| 86 |
+
"shape": [
|
| 87 |
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1,
|
| 88 |
+
3,
|
| 89 |
+
256,
|
| 90 |
+
256
|
| 91 |
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],
|
| 92 |
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"torch": "ok",
|
| 93 |
+
"graph": "ok",
|
| 94 |
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"max_abs_diff": 2.288818359375e-05,
|
| 95 |
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"scale": 19.49439239501953,
|
| 96 |
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"rel_diff": 1.1740906374490299e-06
|
| 97 |
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}
|
| 98 |
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]
|
| 99 |
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}
|
| 100 |
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],
|
| 101 |
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"verification": [
|
| 102 |
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{
|
| 103 |
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"shape": [
|
| 104 |
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1,
|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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],
|
| 109 |
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"torch": "ok",
|
| 110 |
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"graph": "ok",
|
| 111 |
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"max_abs_diff": 2.288818359375e-05,
|
| 112 |
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"scale": 19.49439239501953,
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"rel_diff": 1.1740906374490299e-06
|
| 114 |
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}
|
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],
|
| 116 |
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"exported_at": "2026-09-07T16:18:26+00:00",
|
| 117 |
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"release": {
|
| 118 |
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"repo": "MedOtter/Polyp_PVT",
|
| 119 |
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"revision": "7f46eadc0419bfaac5211421a812ea64213a990b",
|
| 120 |
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"pth_file": "UWaterlooSkinCancer.pth",
|
| 121 |
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"pth_sha256": "d18e6591bed7a82dcdb04075f2963012ec86a0a7c209d734867bae789f0d210d",
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"sidecar_sha256": "402e4863796b2530120ab02b07d1cb1732e28237a9d98398dec1bbc4a73d5594",
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"sidecar_source": "existing",
|
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"group": "checkout_only",
|
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"reference_check": {
|
| 126 |
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"dataset": "UWaterlooSkinCancer",
|
| 127 |
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"split": "val",
|
| 128 |
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"samples": 4,
|
| 129 |
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"reproducible": true,
|
| 130 |
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"status": "pass",
|
| 131 |
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"sizes": [
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{
|
| 133 |
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"size": [
|
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|
| 135 |
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|
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|
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"predict_masks_equal": 4,
|
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|
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|
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"samples": 4,
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"of": 4,
|
| 150 |
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"complete": true
|
| 151 |
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}
|
| 152 |
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}
|
| 153 |
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]
|
| 154 |
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},
|
| 155 |
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"tool": "tools/hf_onnx_export.py",
|
| 156 |
+
"stamped_at": "2026-09-07T16:19:01+00:00"
|
| 157 |
+
}
|
| 158 |
+
}
|