Download src/models/backbones/ResNetPyramid.py from Mhara/melanoma_classification: direct link, hf CLI and curl.
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11.9 kB
| import torch | |
| import torch.nn as nn | |
| import torch.nn.functional as F | |
| import torch.utils.model_zoo as model_zoo | |
| from itertools import chain | |
| import torch.utils.checkpoint as cp | |
| from collections import defaultdict | |
| from math import log2 | |
| from timm.models.registry import register_model | |
| from ..utils.utils import _UpsampleBlend | |
| __all__ = ['ResNet', 'resnet18', 'resnet34', 'BasicBlock'] | |
| model_urls = { | |
| 'resnet18': 'https://download.pytorch.org/models/resnet18-5c106cde.pth', | |
| 'resnet34': 'https://download.pytorch.org/models/resnet34-333f7ec4.pth', | |
| 'resnet50': 'https://download.pytorch.org/models/resnet50-19c8e357.pth', | |
| 'resnet101': 'https://download.pytorch.org/models/resnet101-5d3b4d8f.pth', | |
| 'resnet152': 'https://download.pytorch.org/models/resnet152-b121ed2d.pth', | |
| } | |
| def convkxk(in_planes, out_planes, stride=1, k=3): | |
| """kxk convolution with padding""" | |
| return nn.Conv2d(in_planes, out_planes, kernel_size=k, stride=stride, padding=k // 2, bias=False) | |
| def _bn_function_factory(conv, norm, relu=None): | |
| def bn_function(x): | |
| x = norm(conv(x)) | |
| if relu is not None: | |
| x = relu(x) | |
| return x | |
| return bn_function | |
| def do_efficient_fwd(block, x, efficient): | |
| # return block(x) | |
| if efficient and x.requires_grad: | |
| return cp.checkpoint(block, x) | |
| else: | |
| return block(x) | |
| class Identity(nn.Module): | |
| def __init__(self, *args, **kwargs): | |
| super(Identity, self).__init__() | |
| def forward(self, input): | |
| return input | |
| class BasicBlock(nn.Module): | |
| expansion = 1 | |
| def __init__(self, inplanes, planes, stride=1, downsample=None, efficient=True, bn_class=nn.BatchNorm2d, levels=3): | |
| super(BasicBlock, self).__init__() | |
| self.conv1 = convkxk(inplanes, planes, stride) | |
| self.bn1 = nn.ModuleList([bn_class(planes) for _ in range(levels)]) | |
| self.relu_inp = nn.ReLU(inplace=True) | |
| self.relu = nn.ReLU(inplace=False) | |
| self.conv2 = convkxk(planes, planes) | |
| self.bn2 = nn.ModuleList([bn_class(planes) for _ in range(levels)]) | |
| self.downsample = downsample | |
| self.stride = stride | |
| self.efficient = efficient | |
| self.num_levels = levels | |
| def forward(self, x, level): | |
| residual = x | |
| bn_1 = _bn_function_factory(self.conv1, self.bn1[level], self.relu_inp) | |
| bn_2 = _bn_function_factory(self.conv2, self.bn2[level]) | |
| out = do_efficient_fwd(bn_1, x, self.efficient) | |
| out = do_efficient_fwd(bn_2, out, self.efficient) | |
| if self.downsample is not None: | |
| residual = self.downsample(x) | |
| out += residual | |
| relu = self.relu(out) | |
| return relu, out | |
| def _load_from_state_dict(self, state_dict, prefix, local_metadata, strict, | |
| missing_keys, unexpected_keys, error_msgs): | |
| super(BasicBlock, self)._load_from_state_dict(state_dict, prefix, local_metadata, False, missing_keys, | |
| unexpected_keys, error_msgs) | |
| missing_keys = [] | |
| unexpected_keys = [] | |
| for bn in self.bn1: | |
| bn._load_from_state_dict(state_dict, prefix + 'bn1.', local_metadata, strict, missing_keys, unexpected_keys, | |
| error_msgs) | |
| for bn in self.bn2: | |
| bn._load_from_state_dict(state_dict, prefix + 'bn2.', local_metadata, strict, missing_keys, unexpected_keys, | |
| error_msgs) | |
| class ResNet(nn.Module): | |
| def _make_layer(self, block, planes, blocks, stride=1, bn_class=nn.BatchNorm2d): | |
| downsample = None | |
| if stride != 1 or self.inplanes != planes * block.expansion: | |
| downsample = nn.Sequential( | |
| nn.Conv2d(self.inplanes, planes * block.expansion, | |
| kernel_size=1, stride=stride, bias=False), | |
| bn_class(planes * block.expansion), | |
| ) | |
| layers = [] | |
| layers.append(block(self.inplanes, planes, stride, downsample, self.efficient, bn_class=bn_class, | |
| levels=self.pyramid_levels)) | |
| self.inplanes = planes * block.expansion | |
| for i in range(1, blocks): | |
| layers.append(block(self.inplanes, planes, bn_class=bn_class, levels=self.pyramid_levels, efficient=self.efficient)) | |
| return nn.Sequential(*layers) | |
| def __init__(self, block, layers, *, num_features=128, pyramid_levels=3, use_bn=True, k_bneck=1, k_upsample=3, | |
| efficient=False, upsample_skip=True, mean=(73.1584, 82.9090, 72.3924), | |
| std=(44.9149, 46.1529, 45.3192), scale=1, detach_upsample_skips=(), detach_upsample_in=False, | |
| align_corners=None, pyramid_subsample='bicubic', target_size=None, | |
| output_stride=4, **kwargs): | |
| self.inplanes = 64 | |
| self.efficient = efficient | |
| super(ResNet, self).__init__() | |
| self.conv1 = nn.Conv2d(3, 64, kernel_size=7, stride=2, padding=3, bias=False) | |
| bn_class = nn.BatchNorm2d if use_bn else Identity | |
| self.register_buffer('img_mean', torch.tensor(mean).view(1, -1, 1, 1)) | |
| self.register_buffer('img_std', torch.tensor(std).view(1, -1, 1, 1)) | |
| if scale != 1: | |
| self.register_buffer('img_scale', torch.tensor(scale).view(1, -1, 1, 1).float()) | |
| self.pyramid_levels = pyramid_levels | |
| self.num_features = num_features | |
| self.replicated = False | |
| self.align_corners = align_corners | |
| self.pyramid_subsample = pyramid_subsample | |
| self.bn1 = nn.ModuleList([bn_class(64) for _ in range(pyramid_levels)]) | |
| self.relu = nn.ReLU(inplace=True) | |
| self.maxpool = nn.MaxPool2d(kernel_size=3, stride=2, padding=1) | |
| bottlenecks = [] | |
| self.layer1 = self._make_layer(block, 64, layers[0], bn_class=bn_class) | |
| bottlenecks += [convkxk(self.inplanes, num_features, k=k_bneck)] | |
| self.layer2 = self._make_layer(block, 128, layers[1], stride=2, bn_class=bn_class) | |
| bottlenecks += [convkxk(self.inplanes, num_features, k=k_bneck)] | |
| self.layer3 = self._make_layer(block, 256, layers[2], stride=2, bn_class=bn_class) | |
| bottlenecks += [convkxk(self.inplanes, num_features, k=k_bneck)] | |
| self.layer4 = self._make_layer(block, 512, layers[3], stride=2, bn_class=bn_class) | |
| bottlenecks += [convkxk(self.inplanes, num_features, k=k_bneck)] | |
| num_bn_remove = max(0, int(log2(output_stride) - 2)) | |
| self.num_skip_levels = self.pyramid_levels + 3 - num_bn_remove | |
| bottlenecks = bottlenecks[num_bn_remove:] | |
| self.fine_tune = [self.conv1, self.maxpool, self.layer1, self.layer2, self.layer3, self.layer4, self.bn1] | |
| self.upsample_bottlenecks = nn.ModuleList(bottlenecks[::-1]) | |
| num_pyr_modules = 2 + pyramid_levels - num_bn_remove | |
| self.target_size = target_size | |
| if self.target_size is not None: | |
| h, w = target_size | |
| target_sizes = [(h // 2 ** i, w // 2 ** i) for i in range(2, 2 + num_pyr_modules)][::-1] | |
| else: | |
| target_sizes = [None] * num_pyr_modules | |
| self.upsample_blends = nn.ModuleList( | |
| [_UpsampleBlend(num_features, | |
| use_bn=use_bn, | |
| use_skip=upsample_skip, | |
| detach_skip=i in detach_upsample_skips, | |
| fixed_size=ts, | |
| k=k_upsample) | |
| for i, ts in enumerate(target_sizes)]) | |
| self.detach_upsample_in = detach_upsample_in | |
| self.random_init = [self.upsample_bottlenecks, self.upsample_blends] | |
| self.features = num_features | |
| for m in self.modules(): | |
| if isinstance(m, nn.Conv2d): | |
| nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu') | |
| elif isinstance(m, nn.BatchNorm2d): | |
| nn.init.constant_(m.weight, 1) | |
| nn.init.constant_(m.bias, 0) | |
| def random_init_params(self): | |
| return chain(*[f.parameters() for f in self.random_init]) | |
| def fine_tune_params(self): | |
| return chain(*[f.parameters() for f in self.fine_tune]) | |
| def forward_resblock(self, x, layers, idx): | |
| skip = None | |
| for l in layers: | |
| x = l(x) if not isinstance(l, BasicBlock) else l(x, idx) | |
| if isinstance(x, tuple): | |
| x, skip = x | |
| return x, skip | |
| def forward_down(self, image, skips, idx=-1): | |
| x = self.conv1(image) | |
| x = self.bn1[idx](x) | |
| x = self.relu(x) | |
| x = self.maxpool(x) | |
| features = [] | |
| x, skip = self.forward_resblock(x, self.layer1, idx) | |
| features += [skip] | |
| x, skip = self.forward_resblock(x, self.layer2, idx) | |
| features += [skip] | |
| x, skip = self.forward_resblock(x, self.layer3, idx) | |
| features += [skip] | |
| x, skip = self.forward_resblock(x, self.layer4, idx) | |
| features += [skip] | |
| skip_feats = [b(f) for b, f in zip(self.upsample_bottlenecks, reversed(features))] | |
| for i, s in enumerate(reversed(skip_feats)): | |
| skips[idx + i] += [s] | |
| return skips | |
| def forward(self, image): | |
| if isinstance(self.bn1[0], nn.BatchNorm2d): | |
| if hasattr(self, 'img_scale'): | |
| image /= self.img_scale | |
| image -= self.img_mean | |
| image /= self.img_std | |
| pyramid = [image] | |
| for l in range(1, self.pyramid_levels): | |
| if self.target_size is not None: | |
| ts = list([si // 2 ** l for si in self.target_size]) | |
| pyramid += [ | |
| F.interpolate(image, size=ts, mode=self.pyramid_subsample, align_corners=self.align_corners)] | |
| else: | |
| pyramid += [F.interpolate(image, scale_factor=1 / 2 ** l, mode=self.pyramid_subsample, | |
| align_corners=self.align_corners)] | |
| skips = [[] for _ in range(self.num_skip_levels)] | |
| additional = {'pyramid': pyramid} | |
| for idx, p in enumerate(pyramid): | |
| skips = self.forward_down(p, skips, idx=idx) | |
| skips = skips[::-1] | |
| x = skips[0][0] | |
| if self.detach_upsample_in: | |
| x = x.detach() | |
| for i, (sk, blend) in enumerate(zip(skips[1:], self.upsample_blends)): | |
| x = blend(x, sum(sk)) | |
| return x, additional | |
| def _load_from_state_dict(self, state_dict, prefix, local_metadata, strict, | |
| missing_keys, unexpected_keys, error_msgs): | |
| super(ResNet, self)._load_from_state_dict(state_dict, prefix, local_metadata, strict, missing_keys, | |
| unexpected_keys, error_msgs) | |
| for bn in self.bn1: | |
| bn._load_from_state_dict(state_dict, prefix + 'bn1.', local_metadata, strict, missing_keys, unexpected_keys, | |
| error_msgs) | |
| def resnet18(pretrained=True, **kwargs): | |
| """Constructs a ResNet-18 model. | |
| Args: | |
| pretrained (bool): If True, returns a model pre-trained on ImageNet | |
| """ | |
| model = ResNet(BasicBlock, [2, 2, 2, 2], **kwargs) | |
| if pretrained: | |
| model.load_state_dict(model_zoo.load_url(model_urls['resnet18']), strict=False) | |
| return model | |
| def resnet34(pretrained=True, **kwargs): | |
| """Constructs a ResNet-34 model. | |
| Args: | |
| pretrained (bool): If True, returns a model pre-trained on ImageNet | |
| """ | |
| model = ResNet(BasicBlock, [3, 4, 6, 3], **kwargs) | |
| if pretrained: | |
| model.load_state_dict(model_zoo.load_url(model_urls['resnet34']), strict=False) | |
| return model |