Add reference and ProtTale prediction text to Supplementary Data 2
Browse files
data/Supplementary_Data/README.md
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@@ -67,6 +67,8 @@ GO-extraction figure and carries no judge labels.
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| `Method` | `ESM2Text`, `Prot2Text`, `ProtT3`, `ProtTale`, `Protein2Text`, or `Reference` |
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| `Kingdom` | Taxonomic group, `Eukaryota` / `Bacteria` / `Archaea` / `Viruses` |
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| `Length_aa` | Sequence length. The short subset is `<= 1024` (n = 852), the long subset `> 1024` (n = 179) |
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| `judge_run1` … `judge_run5` | LLM-as-judge label from each of the five independent runs: `Yes`, `No`, `Maybe`, or `Vague`. Blank for `Reference` |
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| `judge_majority` | `Yes` when at least three of the five runs said `Yes`, otherwise `not-Yes`. This is the label used for every statistical comparison in the paper |
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| `reference_GO` | The protein's curated, experimentally validated Molecular Function GO terms, semicolon separated. The target every extraction is scored against. Identical on all six rows of a protein |
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| 67 |
| `Method` | `ESM2Text`, `Prot2Text`, `ProtT3`, `ProtTale`, `Protein2Text`, or `Reference` |
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| `Kingdom` | Taxonomic group, `Eukaryota` / `Bacteria` / `Archaea` / `Viruses` |
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| 69 |
| `Length_aa` | Sequence length. The short subset is `<= 1024` (n = 852), the long subset `> 1024` (n = 179) |
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| `SwissProt_description` | The protein's curated Swiss-Prot `FUNCTION` description, the reference the judge compares against. Identical on all six rows of a protein |
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| `Prediction` | The description ProtTale generated for this protein, on `ProtTale` rows; the curated description itself on `Reference` rows. Blank on the rows of the four other methods, whose generated texts are not included in this release |
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| `judge_run1` … `judge_run5` | LLM-as-judge label from each of the five independent runs: `Yes`, `No`, `Maybe`, or `Vague`. Blank for `Reference` |
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| `judge_majority` | `Yes` when at least three of the five runs said `Yes`, otherwise `not-Yes`. This is the label used for every statistical comparison in the paper |
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| `reference_GO` | The protein's curated, experimentally validated Molecular Function GO terms, semicolon separated. The target every extraction is scored against. Identical on all six rows of a protein |
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data/Supplementary_Data/Supplementary_Data_2_unseen_per_method.csv
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