README: Prediction column now covers all five methods
Browse files
data/Supplementary_Data/README.md
CHANGED
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@@ -68,7 +68,7 @@ GO-extraction figure and carries no judge labels.
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| `Kingdom` | Taxonomic group, `Eukaryota` / `Bacteria` / `Archaea` / `Viruses` |
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| 69 |
| `Length_aa` | Sequence length. The short subset is `<= 1024` (n = 852), the long subset `> 1024` (n = 179) |
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| 70 |
| `SwissProt_description` | The protein's curated Swiss-Prot `FUNCTION` description, the reference the judge compares against. Identical on all six rows of a protein |
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| `Prediction` | The description
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| 72 |
| `judge_run1` … `judge_run5` | LLM-as-judge label from each of the five independent runs: `Yes`, `No`, `Maybe`, or `Vague`. Blank for `Reference` |
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| `judge_majority` | `Yes` when at least three of the five runs said `Yes`, otherwise `not-Yes`. This is the label used for every statistical comparison in the paper |
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| `reference_GO` | The protein's curated, experimentally validated Molecular Function GO terms, semicolon separated. The target every extraction is scored against. Identical on all six rows of a protein |
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| 68 |
| `Kingdom` | Taxonomic group, `Eukaryota` / `Bacteria` / `Archaea` / `Viruses` |
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| 69 |
| `Length_aa` | Sequence length. The short subset is `<= 1024` (n = 852), the long subset `> 1024` (n = 179) |
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| 70 |
| `SwissProt_description` | The protein's curated Swiss-Prot `FUNCTION` description, the reference the judge compares against. Identical on all six rows of a protein |
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| `Prediction` | The description this method generated for the protein, i.e. the text the judge scored; the curated description itself on `Reference` rows. Together with the judge prompt (Supplementary Note 2), this allows every judge label to be re-scored |
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| 72 |
| `judge_run1` … `judge_run5` | LLM-as-judge label from each of the five independent runs: `Yes`, `No`, `Maybe`, or `Vague`. Blank for `Reference` |
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| 73 |
| `judge_majority` | `Yes` when at least three of the five runs said `Yes`, otherwise `not-Yes`. This is the label used for every statistical comparison in the paper |
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| 74 |
| `reference_GO` | The protein's curated, experimentally validated Molecular Function GO terms, semicolon separated. The target every extraction is scored against. Identical on all six rows of a protein |
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