Commit History

  1. feat(eda): normalize dataset paths and deduplicate results in summary

    95969f7

  1. feat(eda): retrieve chunk size for each dataset in batch processing

    5e1e99a
  2. feat(config): fix some hard code config and docs

    685b361
  3. feat(eda): categorize datasets into small, dask-ready, and xlarge for improved processing

    f06cfcb
  4. feat(eda): adjust worker settings and add emergency mode for handling failed slices for extremly large

    db122fd
  5. feat(eda): enhance dataset processing for extra large

    2cdb847
  6. feat(eda): add adaptive scaling parameters and initial worker configuration for improved resource management

    d94a334
  7. feat(eda): enhance resource utilization by optimizing worker allocation and processing parameters

    32516b1
  8. fix(eda): optimize gene statistics calculation in distributed EDA⁠

    ac07329
  9. fix(eda): remove undefined 'info' variable reference causing crash⁠

    19a6596
  10. feat(eda): add resume capability and graceful error handling⁠

    34c9a87

  1. feat(eda): implement hybrid processing strategy for small and large datasets

    b8d98f3
  2. feat(eda): refactor distributed EDA script for improved performance and memory management⁠

    74e20c3
  3. fix(eda): optimize memory usage and ensure complete data computation⁠

    14cc169
  4. feat(eda): migrate to Dask distributed with adaptive scaling and memory limits

    450c8b2
  5. fix(eda): use recent throughput instead of cumulative average for adaptive scaling

    d25b7a0
  6. feat(eda): add adaptive worker reduction based on throughput monitoring

    e4396ec
  7. fix(config): clarify max_memory_gib allocation for staged processing

    2cae30c
  8. fix(eda): include all successfully scanned datasets (ok_retry, ok_h5py)

    d2cd091
  9. feat(pipeline): add YAML config, metadata-aware scheduling, and dataset slicing⁠

    856e1ba
  10. fix(eda): prevent BrokenProcessPool cascade failures

    790f422
  11. Initial commit: distributed EDA pipeline, max non-zero reporting, and notebook

    dddcc0f