luisacbscs commited on
Commit ·
7f03f91
1
Parent(s): 2209ddb
added yaml data
Browse files- .idea/.gitignore +10 -0
- .idea/FDG-NeuroSegmenter.iml +8 -0
- .idea/inspectionProfiles/Project_Default.xml +25 -0
- .idea/inspectionProfiles/profiles_settings.xml +6 -0
- .idea/misc.xml +7 -0
- .idea/modules.xml +8 -0
- .idea/vcs.xml +7 -0
- README.md +27 -1
.idea/.gitignore
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# Default ignored files
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/shelf/
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/workspace.xml
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# Ignored default folder with query files
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/queries/
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# Datasource local storage ignored files
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/dataSources/
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/dataSources.local.xml
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# Editor-based HTTP Client requests
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/httpRequests/
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.idea/FDG-NeuroSegmenter.iml
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<?xml version="1.0" encoding="UTF-8"?>
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<module type="PYTHON_MODULE" version="4">
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<component name="NewModuleRootManager">
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<content url="file://$MODULE_DIR$" />
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<orderEntry type="jdk" jdkName="Python 3.12" jdkType="Python SDK" />
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<orderEntry type="sourceFolder" forTests="false" />
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</component>
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</module>
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.idea/inspectionProfiles/Project_Default.xml
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<component name="InspectionProjectProfileManager">
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<profile version="1.0">
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<option name="myName" value="Project Default" />
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<inspection_tool class="DuplicatedCode" enabled="true" level="WEAK WARNING" enabled_by_default="true">
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<Languages>
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<language minSize="619" name="Python" />
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</Languages>
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</inspection_tool>
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<inspection_tool class="PyStubPackagesAdvertiser" enabled="true" level="WARNING" enabled_by_default="true">
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<option name="ignoredPackages">
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<list>
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<option value="scipy" />
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<option value="pandas" />
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</list>
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</option>
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</inspection_tool>
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<inspection_tool class="PyUnresolvedReferencesInspection" enabled="true" level="WARNING" enabled_by_default="true">
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<option name="ignoredIdentifiers">
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<list>
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<option value="str.*" />
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</list>
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</option>
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</inspection_tool>
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</profile>
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</component>
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.idea/inspectionProfiles/profiles_settings.xml
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<component name="InspectionProjectProfileManager">
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<settings>
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<option name="USE_PROJECT_PROFILE" value="false" />
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<version value="1.0" />
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</settings>
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</component>
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.idea/misc.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<project version="4">
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<component name="Black">
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<option name="sdkName" value="Python 3.12" />
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</component>
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<component name="ProjectRootManager" version="2" project-jdk-name="Python 3.12" project-jdk-type="Python SDK" />
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</project>
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.idea/modules.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<project version="4">
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<component name="ProjectModuleManager">
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<modules>
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<module fileurl="file://$PROJECT_DIR$/.idea/FDG-NeuroSegmenter.iml" filepath="$PROJECT_DIR$/.idea/FDG-NeuroSegmenter.iml" />
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</modules>
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</component>
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</project>
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.idea/vcs.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<project version="4">
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<component name="VcsDirectoryMappings">
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<mapping directory="" vcs="Git" />
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<mapping directory="$PROJECT_DIR$" vcs="Git" />
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</component>
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</project>
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README.md
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# FDG-NeuroSegmenter
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<b>FDG-NeuroSegmenter</b> is a deep-learning-based model developed to perform the automatic segmentation of 52
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anatomical regions in brain [<sup>18</sup>F]FDG PET images.
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Here you can find the [nnU-Net](https://github.com/MIC-DKFZ/nnUNet) models! For more information and other resources
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check out the [repository on GitHub](https://github.com/NM-Radiopharmacology/FDG-NeuroSegmenter.git).
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-
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If you use the FDG-NeuroSegmenter models in your research, please cite our paper:
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> **Brain Fluorodeoxyglucose PET Anatomical Segmentation via AI: Extensive Validation in the Neurodegenerative Spectrum**
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> Luísa C. Silva, Francisco P. M. Oliveira and Durval C. Costa for the Alzheimer's Disease Neuroimaging Initiative and for the Frontotemporal Lobar Degeneration Neuroimaging Initiative
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---
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license: mit
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tags:
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- medical
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- neuroimaging
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- fdg-pet
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- brain-segmentation
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- deep-learning
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- 3d-segmentation
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datasets:
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- adni
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- nacc
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- oasis3
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- nifd
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pipeline_tag: image-segmentation
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library_name: pytorch
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---
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# FDG-NeuroSegmenter
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<b>FDG-NeuroSegmenter</b> is a deep-learning-based model developed to perform the automatic segmentation of 52
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anatomical regions in brain [<sup>18</sup>F]FDG PET images.
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Here you can find the [nnU-Net](https://github.com/MIC-DKFZ/nnUNet) models! For more information and other resources
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check out the [repository on GitHub](https://github.com/NM-Radiopharmacology/FDG-NeuroSegmenter.git).
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If you use the FDG-NeuroSegmenter models in your research, please cite our paper:
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> **Brain Fluorodeoxyglucose PET Anatomical Segmentation via AI: Extensive Validation in the Neurodegenerative Spectrum**
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> Luísa C. Silva, Francisco P. M. Oliveira and Durval C. Costa for the Alzheimer's Disease Neuroimaging Initiative and for the Frontotemporal Lobar Degeneration Neuroimaging Initiative
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